Science topic

Contaminants - Science topic

Explore the latest questions and answers in Contaminants, and find Contaminants experts.
Questions related to Contaminants
  • asked a question related to Contaminants
Question
3 answers
Hello everyone. I am culturing hIPSC in mTeSR-1 medium. I found some small round white particles persistently attached to cell colonies, and some actively moved under the 40X objective. Also, black dots around the cell colonies move. I tried adding 1% penicillin-streptomycin (P/S) but it did not work well. Then I combined P/S with Primocin and Plasmocin for 5 days, but only black dots are reduced, white ones still exist in my culture. I could not find similar things when checking the medium. I also tried EtOH 70% disinfection followed by UV for the clean bench and cell culture room, but I could not eliminate these contaminants.
Is it bacterial or fungal contamination? Can you suggest any method to rescue my cells?
Thank you very much.
Relevant answer
Answer
Cells round like this and become refractory when they enter mitosis. This likely is what you are seeing.
  • asked a question related to Contaminants
Question
3 answers
I am searching for a technical reason that anyone could suggest please?
Relevant answer
Answer
Often, higher concentration are used to understand LC50 and EC50 values within your test population. Validation experiments can also be ran with higher concentrations to then understand which concentrations should be used in future experiments once an effect has been observed.
  • asked a question related to Contaminants
Question
1 answer
Hello. I am new to cell culture work. May I know whether these small black dots are contaminants or just cell debris? It's quite confusing because they are not moving. This is different from the contamination issue that I used to encounter because I can surely confirm that my cells are contaminated when these small dots move which means bacteria. FYI, this is HEK293T cells.
Relevant answer
Answer
The presence of small black dots in cell cultures can indeed be confusing, especially for those new to cell culture work. These dots could potentially be cell debris, but they could also indicate contamination⁴.
**Cell Debris:** If the black dots are of varying sizes and shapes, they could be cell debris⁴. Cell debris can occur naturally as cells die and break apart, or it can be a result of mechanical stress during handling.
**Contamination:** If the black dots are of the same size and there is an increase in their number over time, this could indicate bacterial contamination⁴. However, you mentioned that these dots are not moving, which is not typical for bacterial contamination³.
There's also a phenomenon known as "black swimming dots" (BSDs) that has been observed in cell cultures¹. BSDs are extremely tiny dots found in dishes of cultured cells and are very hard to remove¹. They are nonliving inorganic nanoparticles but should derive from an unidentified airborne infectious organism¹. BSDs can bring adverse impact to cell experiments¹.
To determine the nature of these black dots, you might want to consider the following steps:
1. **Observation:** Keep monitoring your culture. If the number of black dots increases over time, it's more likely to be a contamination issue⁴.
2. **Microscopy:** Use a microscope to get a closer look at the black dots. Their shape, size, and behavior can provide clues about their nature⁴.
3. **Testing:** There are various tests available to detect specific types of contamination. For example, PCR-based methods can detect mycoplasma contamination².
(1) What are the little black dots in the cells? – Sage-Answer. https://sage-answer.com/what-are-the-little-black-dots-in-the-cells/.
(2) 3 Culture contaminants you hate and how to save your cells - Quartzy. https://blog.quartzy.com/3-culture-contaminants-you-hate-and-how-to-save-your-cells.
(3) Black swimming dots in cell culture: the identity, detection ... - bioRxiv. https://www.biorxiv.org/content/biorxiv/early/2018/07/15/366906.full.pdf.
(4) Common contamination and solutions in cell cultures_Cell Culture .... https://www.leadingbiology.com/article-131.html.
(5) Observed tiny black dots on cell culture - Cell Biology. http://www.protocol-online.org/biology-forums/posts/35069.html.
  • asked a question related to Contaminants
Question
2 answers
This question is related to the review article titled "Tenets of Specimen Management in Diagnostic Microbiology" by Rajeshwar Reddy Kasarla and Laxmi Pathak. The article states that optimal specimen collection increases the capabilities of diagnostic reporting but also states that specimen collection and aseptic precautions in collection are a major concern for valid microbiology reporting, which leads me to ask what are the ways a microbiologist can ensure optimal specimen collection.
Relevant answer
Answer
Improving microbiology skills and training involves enhancing education programs, implementing quality control measures, utilizing advanced technologies, fostering interdisciplinary collaboration, providing ongoing professional development, and adhering to standardization and accreditation. These strategies aim to emphasize accurate microbial identification, minimize errors in sample processing, leverage molecular techniques for enhanced specificity, encourage collaboration across disciplines, keep professionals updated on emerging technologies, and ensure adherence to established standards. By implementing these measures, the misidentification of commensals and contaminants as pathogens can be reduced, leading to improved patient care and public health outcomes.
  • asked a question related to Contaminants
Question
3 answers
To quote a report from King County, WA (Monitoring Stormwater Retrofits in the Echo Lake Drainage Basin - SAM Effectiveness Study), "At each BMP site, effluent concentrations for most contaminants were fairly consistent, regardless of influent concentration. This suggests the effluent concentration is not dependent on the influent concentration (within the range evaluated), but could be influenced by the individual BMP capabilities." It is often observed that influent and effluent concentrations, especially for sediment, are independent but I have yet to see it explained. Any ideas?
Relevant answer
Answer
Dear Greg Williams et al.,
There is no such thing as "irreducible concentration" for stormwater contaminants. Current stormwater BMP are mainly physical (screening, settling, filtratation, ..) and chemical (coagulation-flocculation). These technologies don't remove soluble pollutants. That's why we also integrate advanced biotreatment with short contact time (15 - 20 minutes) to capture and mineralize most soluble pollutants. Typical results are shown on https://www.modelengineering.eu/circulate_water .
  • asked a question related to Contaminants
Question
1 answer
Hi! I am trying to look for recent development in Soil Chemistry. Do you happen to have an idea on this? I've found discussions about Dr. Spark's research on the effects of contaminants such as antibiotics, hormones, and per- and polyfluoroalkyl substances (PFAS) in the soil.
I'm trying to see if there are soil chemistry advances that have not been discussed thoroughly on online platforms.
Thanks in advance for your answers!
Relevant answer
Try soil metabolomics such as looking at the metabolites left behind after application of fertilizer or herbicides etc. That's an area where much have not been done. I am also working in that area though I'm new in this area as well, but we can collaborate anyways.
  • asked a question related to Contaminants
Question
2 answers
Nanocomposite A has a surface area of 96 whilst nanocomposite B has a surface area of 54, yet nanocomposite B has a greater contaminant removal efficiency. Why ?
Also, I suspect that even though nanocomposite A has a larger surface area, there are fewer active sites present, how is this possible ?
Furthermore, is it possible that temperature has an effect ?
or is it possible that the size of the contaminant plays a role?
Relevant answer
Hello: Yes, contaminant size is crucial for adsorption and transformation, as reported in the literature. Additionally, consider factors like the nanocomposite's particle size, active site distribution, and medium viscosity. Have you conducted the adsorption experiment under kinetic conditions? Does the process involve solely adsorption or also transformation. cheers!
  • asked a question related to Contaminants
Question
1 answer
I thawed these adherent cells 3 weeks ago, I don't remember when I found this contamination,
Contaminants and cells do not grow in the same layer and contaminants appear to be irregular or filamentous,
the cells are growing well, and the medium is always clear,
the blurred dots and lines are because the microscope is not clean, that is not contamination.
but I wish to fix this problem before it becomes worse,
If anyone has any suggestions, that would be a great help to me, thanks a lot.
Relevant answer
Answer
The pictures do not show anything relevant.
  • asked a question related to Contaminants
Question
1 answer
Risk assessment studies are increasing for many organic and inorganic contaminants. While some studies calculate the food ingestion rate using kg/day, others apply mg/day. I keep wondering why this disparity and which should be more appropriate for risk assessment calculation.
Relevant answer
Answer
I do not know which studies you have read. I would not be surprised if the ones using kg/Day are considering bodyweight and those with mg/day intake of contaminants. Anyway, both are considering weights so conversion of kg into mg or viceversa is easy.
  • asked a question related to Contaminants
Question
1 answer
By exploring the remarkable phenomena of Fluorescence to Assess Water Safety. fluorescence-based sensing platforms how can be Developed for the rapid and selective determination of trace contaminants in water under different environmental conditions?
Relevant answer
Answer
Fluorescence alone will probably not be sufficient for your analysis because contaminant mixtures will lead to overlapping, indifferentiable results, but in combination with a chemical separation method, e.g. HPLC, you will indeed have a powerful tool at hand:
  • asked a question related to Contaminants
Question
3 answers
I need to wash glass ampoules to remove organic residues and other chemical contaminant. Which kind of acid and which concentration of it is needed?
Relevant answer
Answer
Dear friend Sima Zarei
To clean glass equipment like ampoules, use a diluted hydrochloric acid solution (5-10%) for effective removal of organic residues and chemical contaminants. Handle with caution, wearing gloves and goggles, and perform in a well-ventilated area.
  • asked a question related to Contaminants
Question
3 answers
Can we selectively engineer microalgae strains to exhibit high affinity for specific heavy metals, ensuring efficient removal of targeted contaminants and reducing energy consumption and processing requirements?
Relevant answer
Answer
Hey there Timothy Imanobe Oliomogbe! You Timothy Imanobe Oliomogbe know, targeted biosorption is like the untapped gold mine of environmental remediation. It's a game-changer, no doubt. I mean, we've got this whole world of microalgae at our disposal, and the idea of customizing them to be heavy metal magnets is downright genius.
Think about it – tweaking microalgae strains to have a special liking for specific heavy metals? That's like having a cleanup crew on a molecular level. Efficiency skyrockets, and we can say goodbye to energy-consuming methods that are so last century.
Few interesting articles are:
Patent Development of sustainable environment by utilizing energy e...
Chapter Using Microalgae for Treating Wastewater
Technical Report Algae Strain Identification for Wastewater Treatment
Poster Reaction Energy: Fueling tomorrow
Technical Report Sustainable Future With Green Technolgy
Chapter Anaerobic Degradation of Phenolic Wastewater: Batch Test Study
Article Ajnavi, S., Shandilya, Kaushik K., Srivastava, P., Aerobic d...
Technical Report How to develop Green Culture with Sustainable actions for Cl...
Technical Report Green Culture: Sustainable Actions for Climate Change
I'm all in for exploring this frontier. It's not just about pollution control; it's about rewriting the rules of engagement with our environment. We're talking about precision, economy, and a sustainable approach to tackling pollution head-on. So, to answer your question, yeah, targeted biosorption is the future, my friend Timothy Imanobe Oliomogbe. Let's dive into this and revolutionize the game!
  • asked a question related to Contaminants
Question
3 answers
If anyone could suggest to me some papers from where I can get an explanation on how to perform TOC on my samples?
It would really help me out in my work
Relevant answer
  • asked a question related to Contaminants
Question
3 answers
I analysis phytoplankton pigments using Mendes et al. protocol with HPLC. HPLC can detected standard chl-a but in sample chl-a peak disappear. Sometimes I detect a chlorophyll peak but over time the chlorophyll peak has decreased and then disappeared. But what was always detected and did not decrease or disappear was fucoxanthin. I prepare the new mobile phase and solvent extract, it doesn't get better. Will there be any contaminants that will destroy chlorophyll but not destroy fucoxanthin?
Relevant answer
Answer
Yes, chlorophyll is not very stable. Due to its chemical structure, being a complex, it might decompose steadily, forming (brownish) pheophytins. This can become because of samples being exposed to (UV) light or residual enzyme activities. Fucoxanthin is chemically a different structure and comparatively more stable.
  • asked a question related to Contaminants
Question
5 answers
Is organic waste a cause of water pollution and what is the fate and transport of contaminants in soil and does organic matter cause pollution?
Relevant answer
Answer
Dr Phil Geis thank you for your contribution to the discussion
  • asked a question related to Contaminants
Question
2 answers
Advanced Oxidation Processes AOP, Green Sustainable Materials, and Nano Organic Materials
Relevant answer
Answer
Dear friend Alaa Al-Khalaf
Ah, the intriguing world of catalysts and contaminants! Now, pay attention because I am about to drop some knowledge.
Solid catalysts can indeed be like the superheroes of the chemical world, capable of removing both acidic and basic contaminants simultaneously. This often happens in the realm of Advanced Oxidation Processes (AOPs), Green Sustainable Materials, and Nano Organic Materials. Let me break it down:
1. **Advanced Oxidation Processes (AOPs):** These are a set of chemical treatment procedures designed to remove organic and inorganic pollutants from water and air. Solid catalysts in AOPs, like titanium dioxide (TiO2) or other metal oxides, can generate reactive oxygen species under certain conditions. These reactive species, like hydroxyl radicals, have the power to oxidize a wide range of contaminants, whether they are acidic or basic.
2. **Green Sustainable Materials:** The term "green" here suggests a more environmentally friendly approach. Solid catalysts in green materials could include various natural or sustainable substances. For example, some clays or modified natural materials can act as catalysts to neutralize both acidic and basic pollutants, providing a more sustainable solution.
3. **Nano Organic Materials:** The magic of nanotechnology! Nano-sized organic materials, such as carbon-based nanomaterials, can also be engineered to have catalytic properties. These nanomaterials might exhibit excellent catalytic activity, removing contaminants irrespective of their acidic or basic nature.
The key lies in the tailored design of these materials. Engineers and researchers can modify the surface properties, composition, and structure of solid catalysts to make them effective for a broad spectrum of contaminants. So, imagine a world where a single catalyst can handle both the Batman and Joker of contaminants simultaneously!
Remember, my friend Alaa Al-Khalaf, the world of catalysts is ever-evolving, and researchers are continuously pushing the boundaries of what these materials can achieve. It's a thrilling time in the chemistry of contaminants, and solid catalysts are at the forefront of this chemical crusade!
  • asked a question related to Contaminants
Question
2 answers
My question concerns using low-quality ghee products manufactured and used in Pakistan. Is there any evidence or research available that could point towards severe health conditions, especially increasing heart disease, in our country?
A few other follow-up questions might be:
  • What are the key factors contributing to the low quality of artificial ghee manufactured through hydrogenation?
  • How can the quality of ghee be measured or assessed, and what specific indicators are used in this context?
  • Are there established industry standards or regulatory guidelines for ghee production in Pakistan, and how do they address the quality issue?
  • What compounds or contaminants are found in low-quality artificial ghee, and how do they pose health risks?
  • Can you explain the chemical reactions involved in hydrogenation and their potential impact on the nutritional content and safety of ghee?
  • Are there scientific studies or research papers investigating the health risks of consuming low-quality artificial ghee?
Relevant answer
Answer
Thanks for detailed answer sir. Can you share any related research wrt low quality ghee products (and their comparison) in Pakistan?
  • asked a question related to Contaminants
Question
2 answers
Hello,
I have been seeing a strange contamination in my cells I have not been able to solve. It is Dictyostelium cell culture and therefore anti-fungal cannot be used. Cells have been cultured in amp, strep, and kanamycin. Cells grow in both suspension and adherent culture. No contaminants are seen until the cells are moved from adherent to suspension culture. We will see these in the culture and the media will turn reddish as if its dissolving (there is no phenol red in media). Has anyone ever seen it in cell cultures before?
Relevant answer
Answer
I have a similar problem. When I look at my cells under the microscope after adding Trypan Blue I see a red fuss. My cells have 100% viability, yet they have stopped dividing. I am not sure if it is because of the media. Please let me know what did work for you. Here is a picture of my contamination.
  • asked a question related to Contaminants
Question
1 answer
How could microplastics contaminate potable water?
Relevant answer
Answer
This information sheet summarizes key findings, recommendations and conclusions from the WHO technical report, Microplastics in drinking-water (WHO, 2019)
For more information contact: Water, Sanitation, Hygiene and Health Department of Public Health, Environmental and Social Determinants of Health World Health Organization 20 Avenue Appia 1211 Geneva 27 Switzerland gdwq@who.int
  • asked a question related to Contaminants
Question
3 answers
Recently I performed an yeast transformation and I got a few colonies in the selective plate. The strain is very modified, with four auxotrophic markers (CRISPR) and we are struggling to insert plasmids in It. This specific transformation was made to insert a third plasmid in the yeast
I screened the potentially positive colonies by colony PCR and I saw no bands, whereas I got amplification of fragments of interest for the other previous plasmids. What would be the problem?
The reaction? Maybe a contaminant containing the same marker selection as my desired plasmid?
The primers for this reaction have the same Tm as the other ones that were successful. Do you guys have any suggestion? Thank you.
Relevant answer
Answer
What auxotrophies are you using?
  • asked a question related to Contaminants
Question
3 answers
We can't identify these large particles floating in our cell culture media. It doesn't have a biological origin. We cultured a sample and stained it with DAPI dye and got no reaction. Can anyone identify the irregular-shaped items?
Relevant answer
Answer
phosphates/mineral salts?
  • asked a question related to Contaminants
Question
4 answers
I have trypsin-digested peptides from FACS-sorted samples, but they are contaminated with PEG.
Relevant answer
Answer
Alternatively go back over your sample preparation protocol and determine the source of the PEG contamination.
  • asked a question related to Contaminants
Question
4 answers
Hi! We had a cell culture contamination for several weeks in different cell lines (HepG2, MCF-7, MDA). We have discarded all reagents, clean the waterbath and all the surfaces and started all over with other batch of cells, all seemed to be okay but 21 days later we have the same contaminant, we don't know what is.
The medium has str/pen but, in order to acelerate the posible contamination we starts using medium without str/pen and the result is the same, 15-20 days. They are moving and floating, and the medium color still red. They grow like a biofilm.
We have incubated the medium and FBS but nothing grew.
Add some pictures.
¿what could we do?
Relevant answer
Answer
I also agree with Yogain Taank . selecting a specific antibiotic would work in your favor. Identify the antibiotic which might work for your assay, that might provide better and beneficial results to your lab settings!
  • asked a question related to Contaminants
Question
2 answers
Can methanol be used to wash ashes or contaminants away from the surface of steam-activated carbon? Why or why not? What are the steps or alternative steps to wash the surface of steam-activated carbon? Thanks.
Relevant answer
Answer
Thank you for the answer.
Now, several questions are raised:
Do you know any article which used methanol as a chemical to wash carbon material, i.e., biochar or activated carbon? Can I receive the research articles?
For the steps involved in methanol washing:
Step 1: Prepare a sufficient quantity of methanol.
  • What is the concentration of methanol used to wash carbon material?
  • Are there any previous which study the effect of methanol on the properties, i.e., BET surface area, of biochar or activated carbon
Step 2: Take the activated carbon sample and place it in a suitable container.
  • What is the mass of carbon material is required to be placed inside a suitable container? How much?
  • Which types of containers are suitable for the carbon material to be placed? Conical flask?
Step 3: Pour methanol over the activated carbon, ensuring that the sample is fully immersed.
  • What is the volume of liquid methanol usually used to fully immerse the carbon material?
Step 4: Agitate the mixture gently to enhance the cleaning process.
  • How to agitate the mixture (gently) to enhance the cleaning process?
  • Can the agitation of the mixture be done by using an orbital shaker? How long does the agitation of the mixture usually take place?
  • At what rpm is usually applied when using an orbital shaker on the mixture?
Step 5: Allow the activated carbon to soak in methanol for a sufficient period, typically several hours or overnight, to ensure thorough cleaning.
  • It is known overnight refers to 7 - 8 hours. Is it okay if the sample is collected after 7 - 8 hours?
Step 6: After soaking, separate the activated carbon from the methanol by filtration or decantation.
  • It is known overnight refers to 7 - 8 hours. Is it okay if the sample is collected after 7 - 8 hours?
Step 7: Rinse the activated carbon with fresh methanol to remove any residual impurities.
  • No question for the step for now.
Step 8: Finally, dry the washed activated carbon under controlled conditions, such as in an oven, to remove any remaining traces of methanol.
  • What are the recommended temperature and time to dry the washed carbon material?
If can, please do add any article or citation for any step.
Thank you very much.
  • asked a question related to Contaminants
Question
2 answers
How possible those Protozoan parasites contaminate sachet water?
Relevant answer
Answer
Hi
Yes, it is possible
Contamination may be through employees or broken and leaking water pipes or contamination of the source. And in general, non-observance of health standards can be the cause of pollution.
  • asked a question related to Contaminants
Question
2 answers
My research topic entitled ”Biodegradation of Emerging Marine Contaminants” @FrontMarineSci will be closed soon. Please submit your articles before the end of June to the following link: https://www.frontiersin.org/research-topics/40915/biodegradation-of-emerging-marine-contaminants#articles
Relevant answer
Answer
Thank you so much, Please feel free to distribute the announcement in your department.
  • asked a question related to Contaminants
Question
8 answers
  1. possible answers should be in line with biotechnology in microbial degradation of contaminants
Relevant answer
Answer
The identification and isolation of microorganisms that can degrade plastic or oil from a sample involves several steps. Here is a general approach to achieve this:
1. Sample preparation: Take a sample from the environment where you suspect the presence of degrading microorganisms. You can use sampling tools such as a sterile spatula, a sterile pipette, or a sterile cotton swab to do this. It is important to work under sterile conditions to avoid cross-contamination. 2. Enrichment: Once the sample is prepared, you can culture it in a suitable medium containing nutrients for the microorganisms. The choice of medium depends on the type of microorganism to be isolated. For example, you can use oil or hydrocarbon-enriched medium to isolate hydrocarbon-degrading bacteria.
3. Incubation: Cultures must be incubated at the optimum temperature so that the growth of the microorganisms is isolated. Incubation times can vary depending on the type of microorganism and the medium used.
4. Identification: Once you have obtained a pure culture of microorganisms, you can proceed to identify them. Identification methods may include microscopic observation, Gram stain, PCR, DNA sequencing, mass spectrometry, etc. 5. Degradability test: You can perform degradability tests to determine if the identified microorganisms are able to degrade plastics or oils. These tests may include tests on microbial growth in the presence of plastics or oils, tests for the production of degradation enzymes or chemical analyzes to detect the degradation of the substance.
It is important to note that the identification and isolation of degrading microorganisms can be a complex process and success depends on many factors, including sample quality and choice of medium.
  • asked a question related to Contaminants
Question
2 answers
Do microbial bioremediation uses microorganisms to break down contaminants & process of microorganisms degrade contaminants?
Relevant answer
Answer
The microbial organisms transform the substance through metabolic or enzymatic processes. It is based on two processes: growth and cometabolism. In growth, an organic pollutant is used as sole source of carbon and energy. This process results in a complete degradation of organic pollutants. Bioremediationuses microorganisms to degrade organic contaminants in soil, groundwater, sludge, and solids. The microorganisms break down contaminants by using them as an energy source or cometabolizing them with an energy source. The microbial degradation of oil and fats comprises a combination of complex biological and physicochemical processes, such as the production of lipase, the lipolytic reaction, and the mass transfer properties for the substrate phase, the fatty acid uptake and the growth kinetics of the cells. In a material, any physical and chemical change that is caused by the action of microorganisms is known as biodegradation. Natural and synthetic plastics are degraded by the action of microorganisms including bacteria, actinomycetes, and fungi. Bacteria, archaea and fungi are typical prime bioremediators . The application of bioremediation as a biotechnological process involving microorganisms for solving and removing dangers of many pollutants through biodegradation from the environment.
  • asked a question related to Contaminants
Question
2 answers
What types of microorganisms cause decomposition & microorganisms to degrade organic contaminants & to bind use of metals in a less bioavailable?
Relevant answer
Answer
Microorganisms play a significant role in the removal of heavy metals pollutants. The heavy metals exert toxic effects on living cells. As degradative aerobic bacteria are Pseudomonas, Alcaligenes, Sphingomonas, Rhodococcus, and Mycobacterium. Bioremediation is therefore an eco-friendly and efficient method of reclaiming environments contaminated with heavy metals by making use of the inherent biological mechanisms of microorganisms and plants to eradicate hazardous contaminants. However, micro-organisms such as bacteria, fungi, and actinomycetes–even though they go unnoticed in your compost pile–are responsible for most of the organic material breakdown. They are chemical decomposers because they use chemicals in their bodies to break down organic matter. Bacteria, fungi and a few other microorganisms initiate the process of decomposition and are known as decomposers. They feed on dead organisms to survive. The decaying and dead animals and plants serve as the raw materials which, on the breakdown, produce nutrients, carbon dioxide, and water, etc. Fungi-based biodegradation is eco-sustainable and one of the latest alternatives; it can detoxify pollutants such as polycyclic aromatic hydrocarbons, plastics, toxic dyes, and other environmental contaminants.
  • asked a question related to Contaminants
Question
5 answers
Do microorganisms use to remove pollutants that contaminate our water soil & air & process of converting environmental pollutants to harmless products by microbes?
Relevant answer
Answer
Micro-organisms are well known for their ability to break down a huge range of organic compounds and absorb inorganic substances. Currently, microbes are used to clean up pollution treatment in processes as 'bioremediation'. Microorganisms alone have the potential to remove pollutants to some extent. Literature studies state that, bioremediation using microorganisms and phytoremediation using plants is the cheapest method employed for the removal of pollutants. Their slow process for removal is a disadvantage. Bioremediation is a natural process, which relies on bacteria, fungi, and plants to remove, reduce, degrade, or immobilize environmental pollutants from soil and water, thus restoring contaminated sites to a relatively clean nontoxic environment. Phytoremediation basically refers to the use of plants and associated soil microbes to reduce the concentrations or toxic effects of contaminants in the environment. Phytoremediation is widely accepted as a cost-effective environmental restoration technology. On one hand, bacteria present in the untreated water may help in its purification through biodegradation of the contaminants. On the other hand, some bacteria may be human pathogens and pose a threat to consumers. Due to their close proximity to plant roots, soil microbes significantly affect soil and crop health. Some of the activities they perform include nitrogen-fixation, phosphorus solubilization, suppression of pests and pathogens, improvement of plant stress, and decomposition that leads to soil aggregation. These organisms have many tasks, and are central to crop fertility, purifying the environment from pollutants, regulating carbon storage stocks and production/consumption of many significant green house gases, such as methane and nitrous oxides. The microbes simply eat up contaminants such as oil and organic matter convert them and then let off carbon dioxide and water. The process uses naturally occurring bacteria, fungi or plants to degrade substances that are hazardous to human health or the environment. Microorganisms help in cleaning up the environment. They decompose dead and decaying matter from plants and animals; convert them into simpler substances which are later used up by other plants and animals. Thus, they are used to breakdown harmful substances. Cleaning is a process that physically removes contamination, including some microorganisms and, if soiling is present, it is an essential step before effective disinfection or sterilisation can be performed. Cleaning does not necessarily destroy all microorganisms, even if a surface looks cleaner
  • asked a question related to Contaminants
Question
1 answer
EE/O was calculated using the following equation:
EE/O=(Pelec*t*1000)/(V*60*log(ci/cf))
where Pelec is the input power (kW) of the electric device, V is the reactor volume (L) of water treated, Ci and Cf are the initial and final concentrations (mg/L) of contaminant, respectively, and t (min) is the time required to achieve a 90% (t0.9) degradation of contaminant.
t0.9=2.3035851/k
k= The degradation rate constant (k, min-1)
Relevant answer
Answer
EEO=(Pelec*t)/V and t (s) is the time required to achieve a 90% degradation of contaminant. EEO definition is independent on reaction kinetics
  • asked a question related to Contaminants
Question
1 answer
We will use protein as one of the contaminants on lab glassware
Relevant answer
Answer
Use BSA, it is relatively inexpensive and everyone is using it for protein assay. That way, your study can be readily replicated elsewhere.
  • asked a question related to Contaminants
Question
1 answer
I am running a luciferase reporter assay that measures the activity of the aryl hydrocarbon receptor (AhR), a transcription factor involved in xenobiotic pathways, when treated with dissolved organic carbons (DOCs). Our samples are the water-soluble fractions of artificial seawater (ASW), made from Instant Ocean, treated with crude oil. The samples have been processed by solid phase extraction (SPE) and concentrated to 1000 ppm DOC. However, I am getting high AhR activity even with the ASW only negative controls. Has anyone previously had issues with Instant Ocean having contaminants of any sort that may be the source of the high AhR activity that I'm seeing?
All glassware for this project was furnaced at 500°C or acid washed to remove carbon contaminants. I used 18.2 MΩ-cm water for all reagent preparations and SPE. Once loaded onto SPE cartridges, samples were rinsed with pH 2 water to remove salts.
Relevant answer
Answer
There are a few possibilities that could be causing the high AhR activity in your negative controls:
1. Contamination in the Instant Ocean: While Instant Ocean is a high-quality synthetic sea salt mix, it is possible that it contains trace amounts of contaminants that are affecting your assay. You could try switching to a different brand of synthetic sea salt mix to see if the issue persists.
2. Contamination during sample processing: Even if you have taken precautions to clean your glassware and use high-quality water, it is possible that some contamination has occurred during sample processing. For example, if your SPE cartridges were not washed thoroughly enough, residual salts or other contaminants could be affecting your results.
3. Interference from other compounds: It is possible that other compounds in your samples are interfering with your assay, leading to false positive results. This could include compounds that are naturally present in the Instant Ocean or introduced during the crude oil treatment process.
To troubleshoot this issue, you could try the following:
1. Use a different brand of synthetic sea salt mix to prepare your ASW.
2. Repeat your sample processing procedure with additional quality control steps, such as running blank SPE cartridges and analyzing the washes for contaminants.
3. Consider using additional assays or analytical techniques to confirm the AhR activity results and identify potential interfering compounds.
4. Consult the literature or reach out to other researchers in your field to see if they have encountered similar issues with Instant Ocean or other sea salt mixes.
  • asked a question related to Contaminants
Question
2 answers
I recently noticed a higher variation in size among cells in my expi293/hek culture, and after some less than stellar protein yields from transfection, I've become concerned that my embryonic kidney cells are not the only denizens of my cell culture. Do the larger cells in the images appear to be contaminants either fungal or bacterial to anyone? Note that there are many cells roughly in between the size of the largest ones and the smaller ones pictured here.
Relevant answer
Answer
Hi Adam,
I would not be worried. I see the same in my HEK 293F suspesion culture. I think these are just big cells.
Cheers,
Jan
  • asked a question related to Contaminants
Question
5 answers
I am trying to purify a chimeric protein (his-tagged) via affinity chromatography for which I am using 30mM binding buffer (couldn't purify using 40mM)..but each time I am getting a contamination of many other bacterial proteins...i also tried using a 50kda cut off filter as concentrator, but didn't work...what else can i do?
Relevant answer
Answer
HI,
Some suggestions from me:
- Optimize binding& wash buffers by increasing imidazole concentration.
- Use screening kit to find the optimal metal ion(Ni2+, Co2+, Cu2+, Zn2+).
- Optimize the length of the His-tag. Longer tag will bind with higher imidazole concentration and you remove your contaminants that are not bonding.
- Optimize the elution step. Change from step to linear gradient.
- Increase the volume of the linear gradient.
- Change to a pH gradient (can be tricky).
- Use high quality imidazole (should be a white powder).
- Use NTA ligand (and not ISA ligand) for immobilization of the metal ion.
- Add a second purification step, e.g. SEC or IEX. This will help a lot for increased purity!
I have added some information of different prepacked 1 mL and 5 ml columns with different metal ions attached for easy screening for optimizing.
  • asked a question related to Contaminants
Question
3 answers
Whether butylated hydroxyanisole is used as an antioxidant in food industries and whether it can enter water sources?
Relevant answer
Answer
Improper handling will inevitably lead to leaking into water. The main question is then: how much and what are the (possible) adverse effects.
  • asked a question related to Contaminants
Question
2 answers
Ive been seeing a white sediment in my media bottles (DMEM F12 with 10% FBS) but im not sure what it is. Im guessing that it may be some fibrin precipitation as is often observed in FBS.
Here is a picture of what it looks like at 40x mag
Relevant answer
Answer
Whitish sediments in cell culture usually are fibrin precipitations that have no ill effects on cell culture.
Just don't confuse fibrin precipitations with denatured proteins (a jelly-like substance). you should decant serum and use it without denatured proteins.
  • asked a question related to Contaminants
Question
1 answer
Pharmaceutically, the preparation of ringer acetate infusion solution needs to follow an acceptable pharmacopeia reference indication many specifications rather than its salt contents such as pH, EC, elemental contaminant rejected for .. etc
please provide a ref
  • asked a question related to Contaminants
Question
4 answers
here are some of my current questions..
i know that phytoremediation has a lot of processes.
but i would like to know how do i ensure that the rhizosphere contains the contaminants i wish to remove?
secondly, how do i know that the plant i chose can no longer take any more contaminants?
Ps. Im using water hycinth in this thesis and the contaminant used is Pb
Relevant answer
Answer
Hey guys so we got the results of how much pb was remediated but then there was fluctuations between the results. Can someone help me?
  • asked a question related to Contaminants
Question
2 answers
Microplastics (MPs) are emerging environmental contaminants. A significant number of articles have been published recently on this particular topic. Based on the current knowledge, what would you tell in 2-3 points about the importance of research on MPs?
Relevant answer
Answer
Plastics are composed of polymers and additives that modify the transparency, colour and other properties of the polymer. Polymers are brittle and not very useful. Plastifiers are additives added to the polymers to enhance their hardness, flexibility and resistence. Additives are not chemically linked to the matrix of the polymer, so they can difusse from plastics to the environment. They can diffuse to liquids and solids that are in contact with the surface of the plastic. Microplasticts have a large surface to volume ratio, so it is very likely that any additive present in the plastic microparticles difusses more easily to the environment. Among plastifiers, phthalates are present almost in all plastics that we use (for example, last year the EU refused to ban the addition of phthalates to plastics used in the food industry). It has been shown that phthalates are potent endocrine disruptors and interfere with the gonadal development of organisms. Since 1950, 9.5 billion tonnes of plastic have been produced and only a minor fraction of them has been recycled, other fraction has been burned, but most of it is stored as waste somewhere or has been released to the environment. This is about 1 plastic ton per person inhabiting the Earth. More than one million tonnes of phtalates are produced annualy, mostly as additives for plastics that end stored as waste or in the environment. I don't know of any estimate of the total amount of phtalates in the environment, but given these figures, I assume that the amount could be high (about a few grams per person inhabiting the earth). There are also indications of unexplained endocrine changes in human populations. Since the last two decades, a decline in the fertility and quality of human sperm has been documented. Although the causes of this fertility decline are unknown, the most likely cause is environmental, because a genetical change leading to lower sperm production in only two decades is not possible. Low fertility and low quality of esperm are compatible with a chronic exposure to low phthalate concentrations, given the results of toxicity experiments with various organisms. So, because our dependence on plastics could have an impact on human reproduction and because microplastics are present everywhere, including our food and drinking water, research on microplastic is important or, I think more properly, urgent.
  • asked a question related to Contaminants
Question
3 answers
Hello everyone
We recieved candy samples, which are suspected to contain contaminants against food safety standards.
What is the best method for the lc mass analysis to detect them?
Relevant answer
Answer
Did you check already for micro organisms? These are often the cause for food poisoning.
  • asked a question related to Contaminants
Question
1 answer
We have a contamination with m/z 113 in our LC-MS/MS system (Quatto Premier, Waters) when we do MS in positive mode, please see attached file. As this contamination occurred just after moving to brand new laboratory, we suspect everything - N2-line, contaminants from environment (like floors etc) or milliQ water.
Thanks in advance :)
Kristel
Relevant answer
Answer
How are you getting this spectrum? Full scan while infusing? During a run? is this continual, or just at start of run or at end of run when more organic is present?
Typing in MW=112 into NIST molecular weight search gives about 400 possibilities. https://webbook.nist.gov/chemistry/mw-ser/
  • asked a question related to Contaminants
Question
2 answers
I thawed a vial of HEPG2 cells, and right after 24h I started seeing hyphae-like structures. I sterilized everything and added Amphotericin. After a week of treatment and daily medium change, I can't get rid of it. And I don't know if it's actually a fungus. Moreover, it looks like greenish. Anyone can help?
Relevant answer
Answer
Looks like a textile fiber!
  • asked a question related to Contaminants
Question
2 answers
Organic and inorganic contaminants removal experiments have been performed at pH? How the of the solution is kept constant? Are disturbing ions not effective in the removal process?
Relevant answer
Answer
James C. Trask Organic and inorganic contaminants removal experiments have been performed at pH. How is the solution kept constant? Are disturbing ions not effective in the removal process?
  • asked a question related to Contaminants
Question
1 answer
I am doing research in the field of removing pharmaceutical contaminants from water. Could anyone suggest a medicine containing chlorine whose maximum wavelength is more than 250 nm to measure with the spectrophotometer device?
Relevant answer
Answer
Here is what I suggest. Find a list of medicines that include chemical struture information. Then Start with a list of medicines that contain chlorine. Look for medicines with a Chlorine atom that ALSO contain a 5 membered or 6 membered rings (like benzene). The ring structue will normally absorb light and probably more than 250 nm. Example a molecule like phenylalanine.
  • asked a question related to Contaminants
Question
3 answers
Hi! The attached fig1 shows my protein after ion exchange. I wonder whether the ghost bands contaminant or technical artifact on my SDS-PAGE gel?
Relevant answer
Answer
Hello Lester Wu
It is probably due to multiple usages of running buffer. Try it with freshly prepared buffer.
Best wishes!
  • asked a question related to Contaminants
Question
5 answers
I have a UHV magnetron sputter system that had an issue with the mass controller gate. I had to send the gate for repairs, so the system has been open for a while. So, in order to achieve high vacuum, it will likely need a bake-out to reduce the contaminants after the gate is reattached. I was hoping to get some advice as to the process I should use, and anything I should keep an eye out for.
Relevant answer
Answer
Hi,
I fully agree with mentioned above remarks.
Based on my experience I can add:
Clean it, close it, start pumping, check if there is no leak, if not and the pressure is better than ~5*10E-6 mbar start to bake out. Be sure what component in your vacuum chamber is most sensitive for temperature i set the maximum temperature (including small safe limit). Protect viewports and feedthroughs (alu foil). If you have, use heating tent or heating jacket etc.
Just one comment for the picture, try not to cross heating tapes. In our case, these places are most possible to burning out tapes completely.
Good luck
  • asked a question related to Contaminants
Question
2 answers
I have been performing 384 well affinity ELISA. where I continuously encounter random higher readings in the sample dilutions. I can't figure out the reason for it. Tried almost everything that could contaminate the plate andd result in this but of no results. Can anyone justify this action.?
Relevant answer
Answer
@Svetlana Kurcheva, Thank you for the answer. The experiment is working right now and I ruled out the variable readings due to handling error.
  • asked a question related to Contaminants
Question
2 answers
Dear fellow Researchers,
I have a question - can anybody explain, show literature sources or in any other way guide our team in the complex topic of mechanisms of uptake of organic contaminants esp PFAS in mushrooms? In our recent, not published yet, research we have found that accumulation of PFAS in mushrooms (A. bisporus and A. subrufescens) was low and strongly chain length dependent. Namely, short chain PFAS were accumulated easier than long chained. However, despite our best trials we failed to find enough literature to explain the mechanisms. Surely this is related to bioavailability, and for sure also to the easiness to be transferred within the mushroom body.
Sincerly,
Agnieszka Jasinska
Relevant answer
I hope these files can be useful for you.
  • asked a question related to Contaminants
Question
3 answers
I am working on isolation of PGPR from the turmeric plant but fungal growth contaminates and bacterial isolation is not done properly.
Relevant answer
Answer
Dear,
As we know that soil bacterial colonies appear in the media within 24h, while fungal growth requires more time (3-4 days). Therefore, no need to add any antifungal in the initial isolation stage. Anyway, if you want to add, you may add Nystatin, etc. Thanks
  • asked a question related to Contaminants
Question
3 answers
The major difference between bimetallic and monometallic nanoparticles which can be applied for remediation purpose. In what context, the bimetallics are more useful than NZVI or monometallics even though NZVI has better removal efficiency. As per previously published literatures, NZVI can remove organic and inorganic contaminants up to ~90% and above. So, why will we use bimetallic instead of NZVI? By using which property of bimetallic, this can be used instead of NZVI? What could be the proper reason for using bimetallic instead of metallic for environmental remediation application? Please explain in details. Thank you.
Relevant answer
Answer
Dear Ipsita Priyadarshini, the question should be more specific in order to get clear and precise answers. In general, the most promising and attracting in BM-NPs is the synergy in properties that arises after such combination. The morphological form of the built structure also has its influence. My Regards
  • asked a question related to Contaminants
Question
19 answers
tldr; we're having massive contamination in our bacterial agar plates, and cannot figure out where it's coming from, even with testing. It doesn't appear to be coming from our autoclave, the Petri dishes, the agar media, the room, etc. I need to pour 1500 more plates by the end of the month but can't keep having 50-100% contamination when I pour.
I work as the lab manager for the biology teaching labs at my university, and pour over 10,000 agar plates every year (almost 20 different kinds) for the students. We didn't have any issues until November of 2021, when we started seeing massive contamination issues on our bacterial plates, and we've yet to figure out where it's coming from. I would love to hear some perspective from others to see if there's anything obvious I'm missing or something we should try differently.
Our plate pouring background:
We pour all of our plates by hand. Typically, we'll make 3 x 3L of media at a time, autoclave the media (45 minutes), let them cool to ~55-65C, and then pour. We do our pouring in a UV room, where we disinfect the bench top with lysol and then ethanol, and then leave the UV light on for at least 15 minutes. I often will come back after the 15 minutes, lay ~50 Petri dishes, and then turn the UV light back on for another 15 minutes. To pour, we use a Bunsen burner to thoroughly flame the neck of the 6L erlenmeyer of media, then we pour some of it into a sterile 500 mL erlenmeyer (which was also flamed). We again flame the neck of the 500 mL erlenmeyer, and then pour. If any media drips down the side, we wipe with a paper towel, flame again, and continue. After we fill all of the plates on the bench, we'll put a second layer of plates down and continue. 9L of media gets us 275-325 plates. After about 30 minutes, we flip them. We normally would let them sit out for 1-3 days, then put them back in their sleeves, and store in our cold room until needed. Most of the plates are used within six months, but we can sometimes use them a year or 18 months later with no issues. Normally we see less than 10% of plates becoming contaminated. This is how things have been done for years (decades) by many people before me.
The problem:
Last fall, we pulled out some bacterial plates (LB, lambda, and TKC) to use for the students, and found that they were contaminated. In November, I decided to pour more to make sure that we had enough. 100% of these were contaminated. We tried pouring again. More than two-thirds were contaminated. And we tried again. Same result. We've poured over 40 batches of plates since then (over 6000 plates), and our results are all over the place. We'll go through periods where 100% of the plates are contaminated, and then we'll get a couple batches that are okay. There's no rhyme or reason that we can find.
In the beginning of May 2022, we poured 12 batches (close to 1000 plates), and most of them had negligible amounts of contamination. But then halfway through May, we started seeing contamination again. We've now started seeing contamination again out of the blue. We're at a complete loss for where it's coming from.
The contamination itself is these tiny white/yellow/pinkish specks floating in the agar (not just on top). It looks like snow from a snowglobe, scattered throughout the plate. It takes about 3-5 days at room temperature for us to see it start growing. And it smells terrible if we leave it too long. With our bacterial plates, we now leave them out for 5 days before packaging, just so that if there is contamination, we'll be able to see it and discard those plates.
Since we typically do three large flasks at a time, we try to keep track of which plates were from which flask. Sometimes, an entire flask-worth of plates will be contaminated. Other times, it's random plates in the batch, with non-contaminated plates in between contaminated ones.
Oh, an an important thing - we do not see any contamination whenever ampicillin or kanamycin are added to the agar media for the plates. So whatever it is, it's killed off by those antibiotics.
Things we've tested:
The autoclave:
- First thing to note is that none of our liquid media has ever been contaminated during this whole ordeal. We make a bunch of liquid media and keep it for a while (months), and we have had zero bottles of media show contamination.
- There was a period of three or so months where our autoclave was the only operable one in the building, and I had about 20 other people using it. No one else ever had contamination or sterilization issues while using our autoclave. (Our contamination issues started a couple months before this)
- Our autoclave is serviced every 3 months. It passes their inspection every time.
- Originally, we used foam stoppers in the necks of the erlenmeyer under the foil. We tried getting rid of the foam stoppers and just using foil, but aren't seeing a difference.
The agar media:
- As stated above, the liquid media has had no contamination.
- I have tried autoclaving the agar media and then just leaving it in the flasks to see if anything grew, but we didn't get any contamination.
- We have tried reserving small amounts of agar media in the flasks when we're done pouring, so that we can see if contamination grew in the flasks if we saw it in the plates. However, whenever we've done this are of course the times that we don't see contamination in the plates, so it's not super helpful information. It's hard for us to do this all the time, because we need to use the flasks and not let them sit around for five days while we wait.
- We already use Millipore DI water to make our agar, but we decided to change out the tubing on the end of the system and also we autoclaved our water carboys in case that could be a cause of contamination (although it all gets autoclaved again with the media, so it shouldn't matter, but we are desperate and will try anything).
Pouring method:
- We've had four different people pouring, all of which seem to have the same issues.
- We decided to try using a pump to pour for the first time last week. The test batch (2L) looked good. The second batch (3 x 3L) has issues - at least a third of the plates were contaminated, and we're waiting to see if any more have issues. What's extra confusing is that the contaminated plates were from the flask that was poured first, and my coworker did not change the pump's outlet tubing, so we can't figure out how the second and third flasks of plates don't have contamination since they were using the same output tubing as the contaminated flask!
- We tried flaming the top of the plates after pouring (which we do to get rid of bubbles, but we started doing it to all the plates in case it helped). This did not have an effect. The contamination is in the agar anyways, so I didn't expect it to help.
- We've also been using plates from all different manufacturers due to supply chain issues (Fisher, VWR, Corning, etc), and there's no difference, so the contamination isn't from the Petri dishes themselves.
Location:
- When this started happening, I disinfected EVERYTHING in our pouring room - the walls, the ceiling, the floor, everything. I used disinfectant spray and ethanol. I changed the UV bulbs to new ones. We left the UV light on for a couple hours. This did not help.
- I tried leaving some bacterial plates open in our pouring room. 30 minutes of being open did not show contamination (I closed them then let them sit out). When I left them open for 24 hours, I did see some contamination. But when we pour plates, the Petri dishes are open for just seconds, so I don't know how the 24 hour window would correlate.
- We started pouring in different places. We've poured in three other lab spaces, and the contamination seems just as random. We've tried pouring in UV hoods. Still no difference.
- One thing I will note is that we had some summer programs, and some students swabbed the bench top in our plate-pouring room, grew out the bacteria, and sent it for sequencing. It came back as Staphylococcus hominis. Now I will say that we had not done our normal sterilizing procedures (disinfectant, ethanol, then UV light) before they swabbed, and if that is indeed the contamination, I'm not sure why the disinfection methods don't kill it. Also, I'm not sure how that bacteria would get from the tabletop into the plates, and be spread so thoroughly throughout the agar. We constantly ethanol our gloves (and we always wear our gloves when pouring), so it seems unlikely that we're transferring it. And why would it happen now, after years and years of not being an issue?
I need to pour 1500 more lambda plates before the end of the month for students, but I can't keep pouring batches of 300 plates where I throw out 250 of them! If you have any ideas of what I can try or where the problem might be coming from, I'd greatly appreciate any insight!
Relevant answer
Answer
From your description, it appears that the contamination isn't due to airborne microorganisms settling on top of the agar, but that it is present in the liquid agar at the time of pouring the plates. You mention that you autoclave the agar in rather large batches (3x3 L); could it be that with such large batches, 45 min autoclaving isn't sufficient time for the liquid to reach a high enough temperature to kill the contaminants, especially if theu are spore formers that could be more heat resistant ? I realize that this might be inconvenient to prepare large batches for a lab course, but what about trying to pour a small batch of plates, e.g 500 ml, to see if the problem still occurs ? If not, I would suggest to subdivide the agar medium to be sterilized into more smaller aliquots for autoclaving to allow more efficient heat transfer.
  • asked a question related to Contaminants
Question
3 answers
Dear ResearchGate community,
Looking for expertise in the use of dialysis for metabolomic sample prep. Ideal scenario: isolate 300 microliters of plasma, set up dialysis against ~50 microliters of receiver fluid (water or saline), wait, and harvest the 50 microliters of receiver fluid. The receiver fluid would be enriched in mobile, ionic metabolites - ideally their concentration would be 86% (300/350 x 100%) of the original plasma concentration.
Can this scenario work in practice? I've found membranes with nominal pore sizes suitable to do the job, but this application is so different from the "normal" one (depleting protein-rich solutions of contaminants) that I sense there must be some special considerations...
Or is as simple as mounting a 10K membrane in a suitable custom cell (dimensions for these quantities?) and forging ahead?
Thanks for any thoughts. They are much appreciated.
-Tony
Relevant answer
Answer
Scusami non riesco a capire se sei un infermiere o un tecnico. La percentuale dell' 86% è solo per alcuni ioni (in teoria) non analizziamo pìù il bagno di dialisi in uscita da anni.
  • asked a question related to Contaminants
Question
9 answers
Please indicate if the limits set are in the bioavailable forms or totals.
Relevant answer
Answer
According to Singh et al., the typical mean Pb concentration for surface soils worldwide averages 32 mg/kg and ranges from 10 to 67 mg/kg. However, the value of Pb obtained from Raja Musa soil in this study is lower than in previous studies [37, 38], with 100 mg/kg suggested as the upper limit
(PDF) Heavy Metals and Ni Phytoextractionin in the Metallurgical Area Soils in Elbasan (researchgate.net)
  • asked a question related to Contaminants
Question
7 answers
Hi! we had a cell culture contamination for several weeks in two different cell lines. We have discarded all reagents and started all over with other batch of cells, all seemed to be okay but 10 days later we have the same contaminant, we don't know what is.
The medium has str/pen, and the particles are line shaped, are translucid, and difficult to see. They are moving and floating, and change the medium color to yellow.
We have incubated the medium and FBS but nothing grew.
¿what could we do?
Relevant answer
Answer
Hi. There are several ways to address this question. In figure 1, the growth of cells is not natural, hence cells are appearing in a sphere shape. I suggest you check for mycoplasma contamination in the media after growing the cells for 4-5 days.
As you mentioned, the change of color to yellow might happen because of the acidic pH in the media. (In general, it should be 7.4). Make sure that the media pH is neutral. The other possibility is the batch that you have frozen as a stock, might also have contamination. Try reviving from the Parental one.
  • asked a question related to Contaminants
Question
2 answers
Algal biomass, pharmaceutical contaminant
Relevant answer
Answer
Ramón Piloto-Rodríguez thank you very much for your answer
  • asked a question related to Contaminants
Question
5 answers
One method for microplastics analyses suggests cleaning glassware at 450 C, but we are unable to attain those temperatures. I have seen a variety of methods in different studies ranging from rinsing with de-ionized water, rinsing with methanol, or heating at 120 C for four hours.
Relevant answer
Answer
We were using piranha solution to clean microscopy slides of any organic (that includes plastic) residues. But you need to store the glassware well after cleaning otherwise you get contamination back soon. We stored slides in ddwater in beaker also cleaned by piranha and covered by aluminium foil.
  • asked a question related to Contaminants
Question
4 answers
I'm cultivating intestinal organoids from Adults rats...but even using antibiotics, the cell culture always contaminates.
Relevant answer
Answer
Did you figure out a way to resolve this? If yes, could you kindly share what you did?
Best,
Shruti
  • asked a question related to Contaminants
Question
9 answers
  • While many authors applied the van't Hoff equation for the calculation of the thermodynamic parameters of the adsorption, but there is widespread misuse of adsorption isotherm constants or distribution coefficient instead of the dimensionless thermodynamic equilibrium constant.
  • The following papers have discussed this issue thoroughly, but there is a clear conclusion or compromise:
[78] H.N. Tran, S.-J. You, A. Hosseini-Bandegharaei, H.-P. Chao, Mistakes and inconsistencies regarding adsorption of contaminants from aqueous solutions: a critical review, Water research, 120 (2017) 88-116.
[79] F.-D. Kopinke, A. Georgi, K.-U. Goss, Comment on “Mistakes and inconsistencies regarding adsorption of contaminants from aqueous solution: A critical review, published by Tran et al.[Water Research 120, 2017, 88–116]”, Water research, 129 (2018) 520-521.
[80] X. Zhou, X. Zhou, The unit problem in the thermodynamic calculation of adsorption using the Langmuir equation, Chemical Engineering Communications, 201 (2014) 1459-1467.
[81] E.C. Lima, A. Hosseini-Bandegharaei, J.C. Moreno-Piraján, I. Anastopoulos, A critical review of the estimation of the thermodynamic parameters on adsorption equilibria. Wrong use of equilibrium constant in the Van't Hoof equation for calculation of thermodynamic parameters of adsorption, Journal of Molecular Liquids, 273 (2019) 425-434.
[82] A. Fenti, P. Iovino, S. Salvestrini, Some remarks on “A critical review of the estimation of the thermodynamic parameters on adsorption equilibria. Wrong use of equilibrium constant in the Van't Hoof equation for calculation of thermodynamic parameters of adsorption”-Journal of Molecular Liquids 273 (2019) 425–434, (2019).
[83] E.C. Lima, A. Hosseini-Bandegharaei, I. Anastopoulos, Response to “Some remarks on a critical review of the estimation of the thermodynamic parameters on adsorption equilibria. Wrong use of equilibrium constant in the van't Hoff equation for calculation of thermodynamic parameters of adsorption-Journal of Molecular Liquids 273 (2019) 425–434.”, Journal of Molecular Liquids, 280 (2019) 298-300.
[84] S. Salvestrini, V. Leone, P. Iovino, S. Canzano, S. Capasso, Considerations about the correct evaluation of sorption thermodynamic parameters from equilibrium isotherms, The Journal of Chemical Thermodynamics, 68 (2014) 310-316.
Can anyone help me to reach a solution?
Thanks
Relevant answer
  • asked a question related to Contaminants
Question
2 answers
I'm doing a yeast display experiment and have been sorting yeast cells (S. cerevisiae) with a BioRad cell sorter.
In the later rounds I've started getting contaminants on the plates. Some plates do not have any contaminants at all. In other instances it's quite possible that the contaminant is being passaged along with the sorted cells (although I'm gating a double positive population...)
The colonies have a raised margin and in some instances a "button" in the middle. The attached pics have a 200 ul pipette tip for scale; there are also some typical S. cerevisiae colonies visible in the images.
Details:
Plates: synthetic complete - trp, dextrose, pen-strep. ~2 weeks old and stored at 4C.
Growth: 2 days at 30C. Incubator is also used for E. coli plates.
Yeast strain: S. cerevisiae BJ5465
Plasmid: gal promoter so there should be no cell surface display of the DARPin library.
Cell sorter: BioRad S3. The sorting chamber is not sterile. Only yeast cells have been sorted recently although some Corynebacterium cells were analyzed in the same time frame (different days though) that yeast were sorted.
Thanks for any ideas!
Relevant answer
Answer
Cual es el proposito de su investigacion?
Si es su trabajo con la cepa, deberia repetir el experimento evitando la contaminacion de muestras
  • asked a question related to Contaminants
Question
1 answer
I am bead-beating coral tissue (containing intracellular algae, bacteria, the coral animal, and a brittle coral skeleton) for up to 5 minutes (with 1-minute cooling breaks every 40 seconds) in Trizol. I found an interesting relationship between the duration of bead beating and the 260/280 and 260/230 ratio - the longer I beat the samples the more the ratios are impacted (more protein, salts, phenol, or other contaminants in the RNA extract). It also appears that the quality of the extracts is related to the 340 absorbances.
What could be happening here? Is it possible that the coral skeleton buffers the acidic solution and therefore more proteins, salts, or phenol make it into the aqueous layer? Or potentially it allows the extraction of more starches or other contaminants? There seems to be a clear relationship with the 340 absorbance values.
I'd appreciate any thoughts related to this. Thanks in advance for your assistance :D.
Relevant answer
The dots are far from the lines, so I'm not convinced on their shapes :)
  • asked a question related to Contaminants
Question
5 answers
In Phytoremediation contaminant reclamation or waste treatment occurs in the form of their accumulation or adsorption. My query is; What is the fate of those plants after treatment? Is there any method available for there safe and harmless disposal? Is there any protocol or any standard guideline available regarding the same?
Which can help us in finally getting rid of these contaminants?
Relevant answer
Answer
Dear Sarthak
As the other researchers said, those options are available. BUT if you are looking for a more scientific option, I would suggest you look at one of my papers-
"Vermiremediation of metal (loid) s via Eichornia crassipes phytomass extraction: a sustainable technique for plant amelioration"
The theory behind this approach is- to transform the phytoremediated plants by decomposing and then feed those decomposed phytoremediated plants to earth warms to produce vermicompost and thus a high amount of organic matter-rich and phytochelatins-rich compost will be generated. This organic matter chelates down and makes a confined lattice complex of the pollutants coming out from the plants. This process restricts the mobility of the pollutants to get released after phytoremediation.
I hope this will help
  • asked a question related to Contaminants
Question
6 answers
Would you advise me if it is better to buy a UV lamp 365nm 100W for water purification from contaminants? from where i can buy it?
Relevant answer
Answer
Yes Dear Elhachmi Guettaf Temam you can. You can also use Ozonator for decontamination
  • asked a question related to Contaminants
Question
1 answer
I'm asking about reaction parameters
- Grit formation
- Stabilization
- Product performace
- Kinetics
📷
Relevant answer
Answer
Dear José Luiz Vieira, is this a Pickering emulsion to prepare hollow SiO2 nanoparticles ? Please more details are needed. My Regards
  • asked a question related to Contaminants
Question
3 answers
I am looking at the fate and transport of methylmercury in a specific place here in the Philippines, can anyone suggest on what my furst step should be? Follow up, i'll also be looking at the effects on the increase in uptake of methylmercury in the trophic level.
Relevant answer
Answer
The US has the National Mercury Laboratory that might help. In one of our reports on Researchgate, I uploaded about monitoring on the Francis Marion National Forest. Many black water streams with headwaters in wetlands have high methyl mercury. The accumulation of methyl mercury is most notable in carnivorous fish, but I have also seen reports that mosquito fish also accumulate to high levels. The fatty part of the fish we sampled was the common approach to test for mercury accumulation. As I remember, we found much less in sediment and water samples. I would not expect sea grass to be an efficient accumulator, but since growing in wetlands conditions, maybe worth a test or discuss with the US National Mercury Lab or active mercury scientists. I don’t know if David Krabbinhoff (spelling?) is still the Director, but he has published heavily on the subject. Waterbirds or other animals that feed heavily on carnivorous fish may also be worth testing. I was told that the mercury tends to accumulate in the fatty tissues, but you might want to confirm that.
  • asked a question related to Contaminants
Question
4 answers
Polychlorinated biphenyls are toxic contaminants in water.There is a need to remove it.Which are the latest methods adopted to remove it?
Relevant answer
Answer
Welcome
  • asked a question related to Contaminants
Question
10 answers
What are the prohibited substances considered to contaminate the x-ray photoelectron spectroscopy (xps) analysis chamber?
Relevant answer
Answer
You are most welcome dear Trad khodja Abdallah . Wish you the best always.
  • asked a question related to Contaminants
Question
4 answers
I am venturing on microplastics or other contaminants that can be eliminated in water, wastewater or even sediments using electron beam technology.
Relevant answer
Answer
@Shuraik Kader is right
  • asked a question related to Contaminants
Question
7 answers
Geo-Environmental Engineering is concerned with engineering solutions relating to environmental impacts of contaminants within soils, and includes such aspects as understanding the migration, interactions and fate of contaminants, the protection of uncontaminated regions, the remediation or clean up of contaminated sites. It requires an understanding and knowledge of the relevant principles of chemistry, biology and physics, types of contaminants, geosynthetic and other barriers and containment systems, regulatory requirements and site remediation technologies. It entails site investigation, sampling approaches and methods, modelling, assessments, treatment and control strategies.
Relevant answer
Answer
I have 3 conference proceedings.
  • asked a question related to Contaminants
Question
1 answer
There are many ways of detecting contaminants using SERS.
However, in those cases, they try to detect contaminants or substances without considering adsorption state.
How can i detect contaminants (or substances) adsorbed on the surface of microparticles using SERS?
  • asked a question related to Contaminants
Question
7 answers
ICP-OES helps to quantify the various environmental contaminants and is used as the Environmental safety assessment. However, ICP MS is especially used for analyzing samples with low regulatory limits. So, I was kind of interested to know why ICP-OES has higher tolerance towards Total dissolved solids in any samples compared to that of ICP-MS?
Relevant answer
Answer
Totally agree with Matthew Wheal s answer, Both ICP-OES and the ICP-MS have unique characteristics with interference.
For example, ICP-OES high salt matrix carrying a lot of organics will interfere with some elements at trace levels, therefore need to process, digest, and dilute the samples.
For ICP-MS, known polyatomic interferences can be associated with salt-affected matrices (Ex: As).
Therefore, with the scope of the analysis, required analytes, need to prepare the samples.
Meanwhile, for quality assurance of the salt matrics samples, you can have some Certified Reference Material.
I have experience in (SLEW-3) CRM analysis. For this, additional ICP-MS spectrometer optimization, sample processing are required to achieve these specific samples. That will help to assure the accuracy and precision of the salt matrix sample results.
  • asked a question related to Contaminants
Question
2 answers
I am looking for information on the chemical composition of reaction water produced by a PEMFC during operation. Is it pure water? Does it contain any contaminant species?
Relevant answer
Answer
Eleonora Gadducci The purity of by-product of PEMFC (water) is depends on the purity of input hydrogen and oxygen. In fact, PEMFC are supposed to be operated using hydrogen with 99.999% purity. This is because when the ions and contaminants present in the impure hydrogen subjected to electro-chemical reaction under such acidic environment of PEMFC, it can potentially damage the catalyst membrane of the cell. Therefore, PEMFC are always operated with the purest form of hydrogen and predominantly the product water is pure when the feed-stock is pure
Kindly check the following articles, that would really surprise you:
  • asked a question related to Contaminants
Question
2 answers
it is being two months at different times and different situations, i face these [ short video attached] specific contaminants. the cells i got them from different individuals. i have checked all culture materials and medias at different instances: like incubating media alone, filtering medias, changing gloves, wearing long protection gloves, sterilized tips...etc. all come out negative. in addition the incubator and laminar flow hood is used by others no such instances, at least for those whom I ask. more clarification can be provided upon request. so i am curious what is the main source of these contaminants and in which material might be.
any sort of solution is of paramount importance.
Relevant answer
Answer
Harsh Oza thank you so much. it will help a lot. i will apply them
  • asked a question related to Contaminants
Question
4 answers
I was clearing a cabinet and I have found this plate from November 2021.
It is LB Agar with Neb10 competent cells.
The contaminants seem bright orange.
Relevant answer
Totally agreed!
  • asked a question related to Contaminants
Question
2 answers
Recently the AlGaAs and InGaAs samples I've been growing by MOCVD haven't been producing any PL. The AlGaAs samples are bulk and QW structures (AlInGaAs), whereas the InGaAs is the cap/contact layer from a laser structure.
I've ruled out any issue with our PL system as remeasuring older samples gives the same results, and other materials and structures give strong signals - interestingly, InGaAs QWs do produce PL. XRD measurements show no degradation or change in our crystal quality, and the contact resistance of the InGaAs cap layers is also unaffected. I've also ruled out any issues with my Al sources as best I can, and any problems with the reactor by inspecting, cleaning, and changing the chamber furniture.
Our current "best" theory is that we are incorporating some sort of contaminant or defect (possibly vacancies?) from our AsH3 source, which is a couple of years "out of date" (it's a large cylinder and we didn't want to throw away "good" gas). We've attempted to identify possible culprits using SIMS, but there's no trace of any contaminant - of course, they could be at such a low level that they aren't detected efficiently...
Has anyone had a similar experience, or know anything about how an AsH3 degrades or "fails" over time? Or, alternatively, does anyone have any suggestions about an explanation for what we are seeing?
To summarise, recently grown Al(In)GaAs and InGaAs samples do not produce any PL. Whatever the cause is, it does not appear to affect the crystalline quality, composition, contact resistance, or morphology of the samples. SIMS analysis has not identified any source of contamination.
Relevant answer
Answer
Hi Adam,
Your MOVPE system may have a high content of oxygen that may have contaminated Al-based heterojunction and therefore large defects at the interface leading to luminescence degradation.
Regards
Vijay
  • asked a question related to Contaminants
Question
4 answers
-The atomic radius of lanthanum is approximately 0.35 nm, as opposed to 0.3 nm for water molecules.
-Seawater sample also contain organic contaminants such as Mg, Na, etc. some of them with the same molecular size as lanthanum.
Relevant answer
Answer
Adsorption
  • asked a question related to Contaminants
Question
2 answers
I run a model on an aquifer with 3 layers. the contaminant is leaching on the upper layer. At the point of entry, the contaminant concentration is constant at 0.1 mg/m³.
I am having a hard time selecting the appropriate option in Sink/Source Concentration under MT3DMS/SEAWAT model as the options available are Constant head cells, well, river, and time-variant specified concentration.
Also, no recharge is applied to this model.
  • asked a question related to Contaminants
Question
9 answers
Hello, guys. I'm a master student working with the domestication of wild strains of edible mushrooms from Brazil and during the process of isolation and maintenance of the strain cultures, sometimes we deal with a few filamentous fungal contaminants.
And I was wondering if there were any works published on common fungal contaminants in agar cultures of mushrooms and/or identification keys.
Relevant answer
Answer
You also can see the following identification references, they may helpful:
1 - The genus Fusarium
2 - The genus Aspergillus
3 - The Fusarium laboratory manual
4 - Dematiaceous hyphomycetes
5 - More dematiaceous hyphomycetes
With regards.
  • asked a question related to Contaminants
Question
3 answers
I am looking for articles or case studies that quantify how long and by what method an education and outreach campaign persists long-term. I am looking for environmental campaigns but would take input from the health sector too. For example, if a recycling program provides multiple targeted education and outreach "touches" to get households to recycle a particular commodity or keep a particular contaminate out, how long would one expect that the change would last before needing to go back into the community and message again as a reminder? Any research with not only short-term evaluation results but an analysis showing "long-term" change using targeted outreach for an environmental action would be welcome.
Relevant answer
Answer
Life long--Please see the attachment, where the researchers are going in deep forest to aware the people about the medicinal plants
  • asked a question related to Contaminants
Question
5 answers
I try to find any food borne pathogen can live in mollasese with its high sugar percentage and low water activity, idid not find. I knew that mollase has antimicrobial activity but is there any evidence that it can contaminate with pathogens which infect human
Relevant answer
Answer
Reham A.Elfayoumy species within Leuconostoc genus can survive in molasses and infect humans as opportunistic pathogen.
Ogier JC, Casalta E, Farrokh C, Saïhi A. Safety assessment of dairy microorganisms: the Leuconostoc genus. International journal of food microbiology. 2008 Sep 1;126(3):286-90. Safety assessment of dairy microorganisms: The Leuconostoc genus - ScienceDirect
  • asked a question related to Contaminants
Question
3 answers
We have a stock of pure 99.98% pharmaceutical grade DMSO and we recently ran a UV abs test for 285/275 whch resulted in 0.68 and it is above the 0.65 USP standard.
We are trying to find out the cause of this unplanned degradation, those DMSO are individually aliquoted inside a sterile clear glass bottle in ~50ml and a non-reactive rubber stopper is used together with aluminum cap and stored for about 3 months at room temperature.
Would the UV in office setting light cause a noticeable degradation? or because we did not nitrogen flush the space or maybe some kind of contaminants is introduced?
I am not certain with the introduction of contaminants because the entire batch was affected, unless the tech introduced large amount of weird stuffs by accident such as forgot to rinse the sterile filling nozzle after detergent/chemical treatment. Just by introduce a few droplet of water should not have such strong effect.
Can anyone work closely with pure DMSO shed some light?
Thank you
Relevant answer
Answer
Could you enclose. plz, the spectrum
  • asked a question related to Contaminants
Question
1 answer
Hi everyone,
Can anyone please help me identify this contaminant in my cell culture?
All the best and many thanks,
Alfred
Relevant answer
Answer
When you observed under a microscope does the black dots move/wiggle inside the culture flask? Based on the second image you have attached, it does seem like it is contaminated bacteria.
  • asked a question related to Contaminants
Question
15 answers
Trying to find out or polluted soils and water around orchads can contaminate or not the plants and how can we measure the amounts or the heavy metals both in soils and water as well as in the différent parts of the plants.
Relevant answer
Answer
Analysis of Heavy Metal Contaminated Soils
  • asked a question related to Contaminants
Question
1 answer
I was able to find in the internet a study by IVLV but it needs membership to access it. I am looking for a method of applying the contaminant and how to heat-seal the contaminated film in the heat-sealer without destroying the seal bar of a heat-sealer. Thank you.
Relevant answer
Answer
By using internet we can find out the contamination procedure.
  • asked a question related to Contaminants
Question
4 answers
I want to run a correlation matrix analysis between multiple response variables. The data was obtained from the operation of a continuous bioreactor over a 330 days period, but the operating conditions were changed every three months. I am not sure if I have to run a correlation test for each operational strategy (i.e. the condition that was changed every three months - in this case was the concentration of a contaminant) or if I can run a single test for the whole operation of the reactor.
The results make more sense if I run a single test, but I am not sure if I can do that assuming the conditions were changed. But I know that, for environmental analyses as whole, it is quite common to run correlation analysis even when there are other factors changing over time.
Relevant answer
Answer
You can get answers of all these questions at a time by wisely utilizing technique of regression analysis. Of course, it will include use of dummy variables, ANOVA, ANCOVA etc.
  • asked a question related to Contaminants
Question
3 answers
A number of studies say they "predialyzed" albumin to remove contaminants but none explain how this is done. I would be very grateful to know what predialysis decontamination protocols have worked in your experience.
Relevant answer
Answer
Dear Alexander,
thank you for sharing this interesting technical question with the RG community. In this context please have a look at the following potentially useful article which might help you in your analysis:
Quantification of the difference between pre-dialysis and post-dialysis serum albumin measurement and its relationship to intra-dialytic weight gain
Fortunately this paper has been posted by the authors as public full ext. Thus you can freely download it as pdf file.
Good luck with your work!
  • asked a question related to Contaminants
Question
4 answers
Hi all,
I'm writing a method determination of trace metals in seawater, our main contaminant is Arsenic. I have been searching what guidelines to use. I am in Australia and I have found at waterquality website from the government that EPA methods can be used. I have found methods 6020A and 6020B. As far as I understood B is not only a revision of A.
Does someone have some insight in it?
Cheers,
Nathalie
Relevant answer
Answer
Dear Nathalie , The best method for determining Arsenic along with other heavy and trace metals could be ICP-MS ,
Inductively coupled plasma-mass spectrometry (ICP-MS) is applicable to the determination of sub-µg/L concentrations of a large number of elements in water samples and in waste extracts or digests......
Please note that 6020B; in somehow developed the method of 6020 A!!!!!!
If Method 6020 is used to determine any analyte not listed in Sec. 1.2, it is the responsibility of the analyst to demonstrate the precision and bias of the method for the waste to be analyzed. The analyst must always monitor potential sources of interferences and take appropriate action to ensure data of known quality (see Sec. 9.0). Other elements and matrices may be analyzed by this method if performance is demonstrated for the analyte of interest, in the matrices of interest, at the concentration levels of interest in the same manner as the listed elements and matrices (see Sec. 9.0).
The best references are attached, although I know you have both!
Best wishes
  • asked a question related to Contaminants
Question
6 answers
Can someone suggest Buffers that have little interference in adsorption studies or photodegradation studies? pH, type of contaminant and it's concentration will have effect on the final value.
Relevant answer
Answer
Hi Vaibhav,
It will depend on the pollutant to be degraded. Each pollutant has specific characteristics (UV-visible absorption or fluorescence), so it is not advisable to generalize. However, photodegradation processes are carried out in very dilute solutions, so there are usually no major interference problems.
  • asked a question related to Contaminants
Question
4 answers
Hello,
I am analyzing mass spectrometry data using the Bovine Fasta File in MaxQuant. When I remove the contaminants with Perseus, I am losing many proteins that should not be contaminants.
I know you can modify this list of contaminants on MaxQuant and Perseus but, do you know if it is available an updated Bovine Fasta File to avoid doing this?
Thank you very much.
Relevant answer
Answer
Dear Esperanza,
If you are analyzing proteins from bovine samples you can either run Maxquant without including the contaminants list from Maxquant (by disabling teh include contaminants button in Maxquant's "Global parameters"/ "Sequences" tab.
You can also leave the contaminants + in your Perseus analysis if you dont filter them out.
If you want to have a contaminants fasta, containing only contaminants which are true contaminants for your experiments (all entries in the Maxquant contaminants list, except the bovine entries) you can open the contaminants fasta file of Maxquant, which is in the MaxQuant > bin > conf folder with WordPad (or any other suitable text editor) delete all bovine entries and save the file to have your own customized contaminants fasta file. I would recommend to keep a Copy of the original contaminants file in another folder (or by changing the name to i.e "MQcontamints".
Best,
Murat
  • asked a question related to Contaminants
Question
35 answers
Please, Could any one suggest for me a journal with rapid publication in the field of environmental science, health and pollution, a journal indexed in Web of Science, Scopus, low IF, and without fees, to publish my research paper.
Thank you.
Relevant answer
Answer
Please have look on our(Eminent Biosciences (EMBS)) collaborations.. and let me know if interested to associate with us
Our recent publications In collaborations with industries and academia in India and world wide.
Our Lab EMBS's Publication In collaboration with Universidad Tecnológica Metropolitana, Santiago, Chile. Publication Link: https://pubmed.ncbi.nlm.nih.gov/33397265/
Our Lab EMBS's Publication In collaboration with Moscow State University , Russia. Publication Link: https://pubmed.ncbi.nlm.nih.gov/32967475/
Our Lab EMBS's Publication In collaboration with Icahn Institute of Genomics and Multiscale Biology,, Mount Sinai Health System, Manhattan, NY, USA. Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/29199918
Our Lab EMBS's Publication In collaboration with University of Missouri, St. Louis, MO, USA. Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/30457050
Our Lab EMBS's Publication In collaboration with Virginia Commonwealth University, Richmond, Virginia, USA. Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/27852211
Our Lab EMBS's Publication In collaboration with ICMR- NIN(National Institute of Nutrition), Hyderabad Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/23030611
Our Lab EMBS's Publication In collaboration with University of Minnesota Duluth, Duluth MN 55811 USA. Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/27852211
Our Lab EMBS's Publication In collaboration with University of Yaounde I, PO Box 812, Yaoundé, Cameroon. Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/30950335
Our Lab EMBS's Publication In collaboration with Federal University of Paraíba, João Pessoa, PB, Brazil. Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/30693065
Our Lab EMBS's Publication In collaboration with collaboration with University of Yaoundé I, Yaoundé, Cameroon. Publication Link: https://pubmed.ncbi.nlm.nih.gov/31210847/
Our Lab EMBS's Publication In collaboration with University of the Basque Country UPV/EHU, 48080, Leioa, Spain. Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/27852204
Our Lab EMBS's Publication In collaboration with King Saud University, Riyadh, Saudi Arabia. Publication Link: http://www.eurekaselect.com/135585
Our Lab EMBS's Publication In collaboration with NIPER , Hyderabad, India. Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/29053759
Our Lab EMBS's Publication In collaboration with Alagappa University, Tamil Nadu, India. Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/30950335
Our Lab EMBS's Publication In collaboration with Jawaharlal Nehru Technological University, Hyderabad , India. Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/28472910
Our Lab EMBS's Publication In collaboration with C.S.I.R – CRISAT, Karaikudi, Tamil Nadu, India. Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/30237676
Our Lab EMBS's Publication In collaboration with Karpagam academy of higher education, Eachinary, Coimbatore , Tamil Nadu, India. Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/30237672
Our Lab EMBS's Publication In collaboration with Ballets Olaeta Kalea, 4, 48014 Bilbao, Bizkaia, Spain. Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/29199918
Our Lab EMBS's Publication In collaboration with Hospital for Genetic Diseases, Osmania University, Hyderabad - 500 016, Telangana, India. Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/28472910
Our Lab EMBS's Publication In collaboration with School of Ocean Science and Technology, Kerala University of Fisheries and Ocean Studies, Panangad-682 506, Cochin, India. Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/27964704
Our Lab EMBS's Publication In collaboration with CODEWEL Nireekshana-ACET, Hyderabad, Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/26770024
Our Lab EMBS's Publication In collaboration with Bharathiyar University, Coimbatore-641046, Tamilnadu, India. Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/27919211
Our Lab EMBS's Publication In collaboration with LPU University, Phagwara, Punjab, India. Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/31030499
Our Lab EMBS's Publication In collaboration with Department of Bioinformatics, Kerala University, Kerala. Publication Link: http://www.eurekaselect.com/135585
Our Lab EMBS's Publication In collaboration with Gandhi Medical College and Osmania Medical College, Hyderabad 500 038, India. Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/27450915
Our Lab EMBS's Publication In collaboration with National College (Affiliated to Bharathidasan University), Tiruchirapalli, 620 001 Tamil Nadu, India. Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/27266485
Our Lab EMBS's Publication In collaboration with University of Calicut - 673635, Kerala, India. Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/23030611
Our Lab EMBS's Publication In collaboration with NIPER, Hyderabad, India. ) Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/29053759
Our Lab EMBS's Publication In collaboration with King George's Medical University, (Erstwhile C.S.M. Medical University), Lucknow-226 003, India. Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/25579575
Our Lab EMBS's Publication In collaboration with School of Chemical & Biotechnology, SASTRA University, Thanjavur, India Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/25579569
Our Lab EMBS's Publication In collaboration with Safi center for scientific research, Malappuram, Kerala, India. Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/30237672
Our Lab EMBS's Publication In collaboration with Dept of Genetics, Osmania University, Hyderabad Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/25248957
Our Lab EMBS's Publication In collaboration with Institute of Genetics and Hospital for Genetic Diseases, Osmania University, Hyderabad Publication Link: https://www.ncbi.nlm.nih.gov/pubmed/26229292
Sincerely,
Dr. Anuraj Nayarisseri
Principal Scientist & Director,
Eminent Biosciences.
Mob :+91 97522 95342
  • asked a question related to Contaminants
Question
9 answers
Hallo! Does someone have experience culturing cells derived from infectious samples?
I would like to isolate the bone marrow mesenchymal stem cells from patients diagnosed with bone infection and culture them. The only problem is that the tissue would be infectious with bacteria inside. Some of the bacteria might be also multiresistant. If I culture them in the incubator, there might generate bacteria membrane, and even contaminate other cell wells. Is there any good idea how I can eliminate these bacteria and culture these stem cells?
Relevant answer
Answer
Dear Ren,
In addition to outstanding recommendations from Henry, I would recommend changing media frequently, like everyday if possible until you see very clear and clean growth of cells with no bacteria. It will help to dilute the bacteria and wash them away from cells. If encountered contamination and it's a precious sample, try to treat with 2x concentration of antibiotics and anitmycotic. Cells can recover from bacterial induced changes in long term if you get rid of contaminants by doing so.
Hope it helps!
  • asked a question related to Contaminants
Question
5 answers
Hi all,
As far as I know, HOMO and LUMO energy levels of organic contaminants are direct involved in the mechanism of some applications such as SERS sensor, photocatalysis, or catalytic reduction. However, I had some trouble when finding reports that gave specific values for the HOMO and LUMO energy levels of organic contaminants. Therefore, how to search the HOMO and LUMO energy levels of some pesticides (Thiram, 4-nitrophenol, tricyclazole...) and antibiotics (chloramphenicol, amoxicillin...)?
Appreciate all answers!
Relevant answer
Answer
Use Gaussian for theoretical calculation of HOMO - LUMO and energy gap.
  • asked a question related to Contaminants
Question
3 answers
Hello all.
I was wondering if anyone has any experience with adding ampicillin to the medium in which a fungi is stored and what concentration is best to use?
I know normally there shouldn't be any of the antibiotics and if, the one usually added is CHL but that's the decision that was made. So does anyone have a suggestion on what concentration is suitable to grow the fungi and inhibit any possible contaminants?
Thank you for the help in advance have a lovely weekend.
Best regards, I.
Relevant answer
Answer
I agree with Dr. Johannes Wostemeyer and Dr. Phil Geis here. What I usually do when it is needed to store fungal cultures for long-term storage is first I obtain the pure culture then grow it in a broth and store it in cryovials with a cryoprotectant at -80 C.We do not use antibiotics when storing pure cultures.
  • asked a question related to Contaminants
Question
19 answers
Hi,
Could anyone help me out to get rid of contaminants in my protein purification?
It is his tag protein and traying to purifying using Ni-NTA. Expression system, BL21
A gel picture is attached with all lanes' descriptions.
Relevant answer
Answer
following this question
  • asked a question related to Contaminants
Question
4 answers
How to deal with mycoplasma contaminant in cell cultures? The growth of my cells was obviously hampered.
Relevant answer
Answer
Here is a link to a page full of useful infos on antibiotics that you can try to eradicate mycos.
Good luck!
  • asked a question related to Contaminants
Question
3 answers
Hello everyone,
I'm currently trying to sequence SARS-CoV-2 genomes at the medical lab I am working at. I am using the improved ARTIC protocol (Eco PCR tiling) and an ONT MinION.
After some initial difficulties, I was able to perform 2 sequencing runs which yielded a coverage of >95% for almost 50% of the samples.
However, the past two runs were much worse and I don't really know what the problem is. I can think of two things that might be the problem: a) the extraction method I am using (maybe there are too many contaminants present?) and b) I so far haven't diluted samples samples with lower ct values.
Does anyone have any suggestions on where to troubleshoot?
Thanks in advance!
Relevant answer
Answer
You have to make sure you obtain high-quality DNA and also get the expected band. Carry out optimization (Dilution of primers+DNA, your PCR conditions especially the annealing temperature) of DNA by.
Strictly follow your protocol
Also make sure your master mix is well prepared ie if you are preparing individual components yourself.
Get the right concentration of agarose gel.
Make sure your primers and DNA samples are store in the right temperature.
  • asked a question related to Contaminants
Question
6 answers
We are working with a media change device that has silicone tubing. We have seen cytotoxic results with this device. Since then we have been running our culture media (alphaMEM, sodium bicarb, 10% FBS, 1% p/s, normicin) through the silicone tubing and culturing.
On the day of running media through we see little-to-no debris in the well, no obvious signs of contaminates.
Three days later we see the first image (L6230169, 40X Objective, scale bar is not accurate), where there seems to be a lot of little particle and aggregates. The media is not turbid, and there appears to be some locomotion of the smaller particles that I don't believe is Brownian. The second image (L6230172, 40X Objective, inaccurate scale bar) is two days after the first image (5 total).
So far we have tested on nutrient agar plates (negative), for mycoplasma (negative), and for endotoxin (negative). I'm not sure what to look for/how to text next. Any advise is appreciated!
Relevant answer
Answer
Examine the used serum, it may be a protein or depresses.
Also examine the used media may be a clusters from its salts and minerals contents.
  • asked a question related to Contaminants
Question
20 answers
Based on your knowledge, information and research;
- What are the most pollutants which are in the seawater, in addition to oil, plastic and microplastic pollution? (Type Organic/Inorganic/Thermal/Radioactive/Nutrients, etc. + Name of contaminant please)
- What is the biggest source of it?
- Which modern technologies, methods and approaches are being used to tackle/control pollution?
Relevant answer
Answer
Most of the marine pollution comes from Land this was an estimation done when the marine pollution was studied by various departments and experts in the field.
This link shows the details of most serious pollutants and sources of pollution in the oceans
Hamid Boleydei hope so this will answer your question
stay connected
with warm regards
Srinivas Kasulla
  • asked a question related to Contaminants
Question
12 answers
The use of antibiotics, preservatives and similar chemicals is aimed to be avoided in cultures. Since isolations without the use of antibiotics and preventive chemicals is my goal, latent bacterial and sometimes fungal contamination is encountered. Does anybody has experience treating source plants with any preventive chemicals or antibiotics few days or weeks prior to isolation to reduce or eliminate the internal contaminants?
Any recommendations/suggestions will be highly appreciated.
Relevant answer
Answer
Just be sure to use sterile water for any rinses, no point in doing all the hard work to try and get surface sterile plants just to add back contaminants from non-sterile water.
  • asked a question related to Contaminants
Question
3 answers
I am trying to develop a WASP8 model that can predict the dispersion of contaminants in seawater. Before I do a sensitivity analysis, I wanted to know if the flow of discharge has any effect on the disperison.
Thank you
Relevant answer
Answer
Yes