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Questions related to Contaminants
Hello everyone. I am culturing hIPSC in mTeSR-1 medium. I found some small round white particles persistently attached to cell colonies, and some actively moved under the 40X objective. Also, black dots around the cell colonies move. I tried adding 1% penicillin-streptomycin (P/S) but it did not work well. Then I combined P/S with Primocin and Plasmocin for 5 days, but only black dots are reduced, white ones still exist in my culture. I could not find similar things when checking the medium. I also tried EtOH 70% disinfection followed by UV for the clean bench and cell culture room, but I could not eliminate these contaminants.
Is it bacterial or fungal contamination? Can you suggest any method to rescue my cells?
Thank you very much.
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I am searching for a technical reason that anyone could suggest please?
Hello. I am new to cell culture work. May I know whether these small black dots are contaminants or just cell debris? It's quite confusing because they are not moving. This is different from the contamination issue that I used to encounter because I can surely confirm that my cells are contaminated when these small dots move which means bacteria. FYI, this is HEK293T cells.
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This question is related to the review article titled "Tenets of Specimen Management in Diagnostic Microbiology" by Rajeshwar Reddy Kasarla and Laxmi Pathak. The article states that optimal specimen collection increases the capabilities of diagnostic reporting but also states that specimen collection and aseptic precautions in collection are a major concern for valid microbiology reporting, which leads me to ask what are the ways a microbiologist can ensure optimal specimen collection.
To quote a report from King County, WA (Monitoring Stormwater Retrofits in the Echo Lake Drainage Basin - SAM Effectiveness Study), "At each BMP site, effluent concentrations for most contaminants were fairly consistent, regardless of influent concentration. This suggests the effluent concentration is not dependent on the influent concentration (within the range evaluated), but could be influenced by the individual BMP capabilities." It is often observed that influent and effluent concentrations, especially for sediment, are independent but I have yet to see it explained. Any ideas?
Hi! I am trying to look for recent development in Soil Chemistry. Do you happen to have an idea on this? I've found discussions about Dr. Spark's research on the effects of contaminants such as antibiotics, hormones, and per- and polyfluoroalkyl substances (PFAS) in the soil.
I'm trying to see if there are soil chemistry advances that have not been discussed thoroughly on online platforms.
Thanks in advance for your answers!
Nanocomposite A has a surface area of 96 whilst nanocomposite B has a surface area of 54, yet nanocomposite B has a greater contaminant removal efficiency. Why ?
Also, I suspect that even though nanocomposite A has a larger surface area, there are fewer active sites present, how is this possible ?
Furthermore, is it possible that temperature has an effect ?
or is it possible that the size of the contaminant plays a role?
I thawed these adherent cells 3 weeks ago, I don't remember when I found this contamination,
Contaminants and cells do not grow in the same layer and contaminants appear to be irregular or filamentous,
the cells are growing well, and the medium is always clear,
the blurred dots and lines are because the microscope is not clean, that is not contamination.
but I wish to fix this problem before it becomes worse,
If anyone has any suggestions, that would be a great help to me, thanks a lot.
![](profile/Chunmei-Jin/post/Anyone_knows_what_kind_of_contamination_is_this_And_most_important_how_to_save_the_cells/attachment/65e050aa1d0f563db306172a/AS%3A11431281226386443%401709199168873/image/1.jpg)
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![](profile/Chunmei-Jin/post/Anyone_knows_what_kind_of_contamination_is_this_And_most_important_how_to_save_the_cells/attachment/65e050aa9141d41f473ee837/AS%3A11431281226444225%401709199169543/image/5.jpg)
Risk assessment studies are increasing for many organic and inorganic contaminants. While some studies calculate the food ingestion rate using kg/day, others apply mg/day. I keep wondering why this disparity and which should be more appropriate for risk assessment calculation.
By exploring the remarkable phenomena of Fluorescence to Assess Water Safety. fluorescence-based sensing platforms how can be Developed for the rapid and selective determination of trace contaminants in water under different environmental conditions?
I need to wash glass ampoules to remove organic residues and other chemical contaminant. Which kind of acid and which concentration of it is needed?
Can we selectively engineer microalgae strains to exhibit high affinity for specific heavy metals, ensuring efficient removal of targeted contaminants and reducing energy consumption and processing requirements?
If anyone could suggest to me some papers from where I can get an explanation on how to perform TOC on my samples?
It would really help me out in my work
I analysis phytoplankton pigments using Mendes et al. protocol with HPLC. HPLC can detected standard chl-a but in sample chl-a peak disappear. Sometimes I detect a chlorophyll peak but over time the chlorophyll peak has decreased and then disappeared. But what was always detected and did not decrease or disappear was fucoxanthin. I prepare the new mobile phase and solvent extract, it doesn't get better. Will there be any contaminants that will destroy chlorophyll but not destroy fucoxanthin?
Is organic waste a cause of water pollution and what is the fate and transport of contaminants in soil and does organic matter cause pollution?
Advanced Oxidation Processes AOP, Green Sustainable Materials, and Nano Organic Materials
My question concerns using low-quality ghee products manufactured and used in Pakistan. Is there any evidence or research available that could point towards severe health conditions, especially increasing heart disease, in our country?
A few other follow-up questions might be:
- What are the key factors contributing to the low quality of artificial ghee manufactured through hydrogenation?
- How can the quality of ghee be measured or assessed, and what specific indicators are used in this context?
- Are there established industry standards or regulatory guidelines for ghee production in Pakistan, and how do they address the quality issue?
- What compounds or contaminants are found in low-quality artificial ghee, and how do they pose health risks?
- Can you explain the chemical reactions involved in hydrogenation and their potential impact on the nutritional content and safety of ghee?
- Are there scientific studies or research papers investigating the health risks of consuming low-quality artificial ghee?
Hello,
I have been seeing a strange contamination in my cells I have not been able to solve. It is Dictyostelium cell culture and therefore anti-fungal cannot be used. Cells have been cultured in amp, strep, and kanamycin. Cells grow in both suspension and adherent culture. No contaminants are seen until the cells are moved from adherent to suspension culture. We will see these in the culture and the media will turn reddish as if its dissolving (there is no phenol red in media). Has anyone ever seen it in cell cultures before?
![](profile/Lauren-Cuoco/post/Strange_Red_Contaminant_in_Cell_Culture_Mold_Bacteria_Crystal/attachment/6181afe8d248c650edaf654a/AS%3A1085811856539648%401635889128467/image/Image.jpeg)
How could microplastics contaminate potable water?
Recently I performed an yeast transformation and I got a few colonies in the selective plate. The strain is very modified, with four auxotrophic markers (CRISPR) and we are struggling to insert plasmids in It. This specific transformation was made to insert a third plasmid in the yeast
I screened the potentially positive colonies by colony PCR and I saw no bands, whereas I got amplification of fragments of interest for the other previous plasmids. What would be the problem?
The reaction? Maybe a contaminant containing the same marker selection as my desired plasmid?
The primers for this reaction have the same Tm as the other ones that were successful. Do you guys have any suggestion? Thank you.
We can't identify these large particles floating in our cell culture media. It doesn't have a biological origin. We cultured a sample and stained it with DAPI dye and got no reaction. Can anyone identify the irregular-shaped items?
![](profile/Leticia-Colin-2/post/Can_anyone_identify_this_foreign_contaminant_in_our_cell_culture_media/attachment/640bb66097e2867d5084ba48/AS%3A11431281125936244%401678489184340/image/162197BF-61EA-43CD-A410-D8CC1D554C52.jpeg)
I have trypsin-digested peptides from FACS-sorted samples, but they are contaminated with PEG.
![](profile/Jose-Luis-Marin-Rubio/post/What_is_the_most_effective_protocol_kit_for_reducing_polyethylene_glycol_PEG_levels_in_peptides_for_mass_spectrometry_analysis/attachment/64c5691a97e2867d509d6220/AS%3A11431281177916199%401690659098106/image/Captura+de+Pantalla+2023-07-29+a+las+20.29.24.png)
Hi! We had a cell culture contamination for several weeks in different cell lines (HepG2, MCF-7, MDA). We have discarded all reagents, clean the waterbath and all the surfaces and started all over with other batch of cells, all seemed to be okay but 21 days later we have the same contaminant, we don't know what is.
The medium has str/pen but, in order to acelerate the posible contamination we starts using medium without str/pen and the result is the same, 15-20 days. They are moving and floating, and the medium color still red. They grow like a biofilm.
We have incubated the medium and FBS but nothing grew.
Add some pictures.
¿what could we do?
![](profile/Ana-Maria-99/post/Where_is_the_contamination_in_our_laboratory/attachment/64bfa1fa806fe2503d010170/AS%3A11431281176857180%401690280441143/image/IMG_20230724_101839.jpg)
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Can methanol be used to wash ashes or contaminants away from the surface of steam-activated carbon? Why or why not? What are the steps or alternative steps to wash the surface of steam-activated carbon? Thanks.
How possible those Protozoan parasites contaminate sachet water?
My research topic entitled ”Biodegradation of Emerging Marine Contaminants” @FrontMarineSci will be closed soon. Please submit your articles before the end of June to the following link: https://www.frontiersin.org/research-topics/40915/biodegradation-of-emerging-marine-contaminants#articles
- possible answers should be in line with biotechnology in microbial degradation of contaminants
Do microbial bioremediation uses microorganisms to break down contaminants & process of microorganisms degrade contaminants?
What types of microorganisms cause decomposition & microorganisms to degrade organic contaminants & to bind use of metals in a less bioavailable?
Do microorganisms use to remove pollutants that contaminate our water soil & air & process of converting environmental pollutants to harmless products by microbes?
EE/O was calculated using the following equation:
EE/O=(Pelec*t*1000)/(V*60*log(ci/cf))
where Pelec is the input power (kW) of the electric device, V is the reactor volume (L) of water treated, Ci and Cf are the initial and final concentrations (mg/L) of contaminant, respectively, and t (min) is the time required to achieve a 90% (t0.9) degradation of contaminant.
t0.9=2.3035851/k
k= The degradation rate constant (k, min-1)
We will use protein as one of the contaminants on lab glassware
I am running a luciferase reporter assay that measures the activity of the aryl hydrocarbon receptor (AhR), a transcription factor involved in xenobiotic pathways, when treated with dissolved organic carbons (DOCs). Our samples are the water-soluble fractions of artificial seawater (ASW), made from Instant Ocean, treated with crude oil. The samples have been processed by solid phase extraction (SPE) and concentrated to 1000 ppm DOC. However, I am getting high AhR activity even with the ASW only negative controls. Has anyone previously had issues with Instant Ocean having contaminants of any sort that may be the source of the high AhR activity that I'm seeing?
All glassware for this project was furnaced at 500°C or acid washed to remove carbon contaminants. I used 18.2 MΩ-cm water for all reagent preparations and SPE. Once loaded onto SPE cartridges, samples were rinsed with pH 2 water to remove salts.
I recently noticed a higher variation in size among cells in my expi293/hek culture, and after some less than stellar protein yields from transfection, I've become concerned that my embryonic kidney cells are not the only denizens of my cell culture. Do the larger cells in the images appear to be contaminants either fungal or bacterial to anyone? Note that there are many cells roughly in between the size of the largest ones and the smaller ones pictured here.
![](profile/Adam-Paoletti/post/In_this_Expi293_hek_cell_culture_do_the_larger_cells_pictured_appear_to_be_either_fungal_or_bacterial_contaminants_or_hek_cells_of_differing_size/attachment/6419099823e35630ace56bb0/AS%3A11431281128422530%401679362455282/image/PXL_20230316_183133475.jpg)
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![](profile/Adam-Paoletti/post/In_this_Expi293_hek_cell_culture_do_the_larger_cells_pictured_appear_to_be_either_fungal_or_bacterial_contaminants_or_hek_cells_of_differing_size/attachment/6419099b23e35630ace56bb2/AS%3A11431281128379272%401679362458027/image/PXL_20230316_181718190.jpg)
I am trying to purify a chimeric protein (his-tagged) via affinity chromatography for which I am using 30mM binding buffer (couldn't purify using 40mM)..but each time I am getting a contamination of many other bacterial proteins...i also tried using a 50kda cut off filter as concentrator, but didn't work...what else can i do?
Whether butylated hydroxyanisole is used as an antioxidant in food industries and whether it can enter water sources?
Ive been seeing a white sediment in my media bottles (DMEM F12 with 10% FBS) but im not sure what it is. Im guessing that it may be some fibrin precipitation as is often observed in FBS.
Here is a picture of what it looks like at 40x mag
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Pharmaceutically, the preparation of ringer acetate infusion solution needs to follow an acceptable pharmacopeia reference indication many specifications rather than its salt contents such as pH, EC, elemental contaminant rejected for .. etc
please provide a ref
here are some of my current questions..
i know that phytoremediation has a lot of processes.
but i would like to know how do i ensure that the rhizosphere contains the contaminants i wish to remove?
secondly, how do i know that the plant i chose can no longer take any more contaminants?
Ps. Im using water hycinth in this thesis and the contaminant used is Pb
Microplastics (MPs) are emerging environmental contaminants. A significant number of articles have been published recently on this particular topic. Based on the current knowledge, what would you tell in 2-3 points about the importance of research on MPs?
Hello everyone
We recieved candy samples, which are suspected to contain contaminants against food safety standards.
What is the best method for the lc mass analysis to detect them?
We have a contamination with m/z 113 in our LC-MS/MS system (Quatto Premier, Waters) when we do MS in positive mode, please see attached file. As this contamination occurred just after moving to brand new laboratory, we suspect everything - N2-line, contaminants from environment (like floors etc) or milliQ water.
Thanks in advance :)
Kristel
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I thawed a vial of HEPG2 cells, and right after 24h I started seeing hyphae-like structures. I sterilized everything and added Amphotericin. After a week of treatment and daily medium change, I can't get rid of it. And I don't know if it's actually a fungus. Moreover, it looks like greenish. Anyone can help?
![](profile/Francesca-Valenti/post/I_may_have_a_contaminant_agent_in_my_HEPG2_cells_but_dont_know_what_is_it/attachment/637ca4c897e2867d506fb7a5/AS%3A11431281098836590%401669113030904/image/IMG-6574.jpg)
Organic and inorganic contaminants removal experiments have been performed at pH? How the of the solution is kept constant? Are disturbing ions not effective in the removal process?
I am doing research in the field of removing pharmaceutical contaminants from water. Could anyone suggest a medicine containing chlorine whose maximum wavelength is more than 250 nm to measure with the spectrophotometer device?
Hi! The attached fig1 shows my protein after ion exchange. I wonder whether the ghost bands contaminant or technical artifact on my SDS-PAGE gel?
![](profile/Lester-Wu-2/post/Are_the_ghost_bands_contaminant_or_technical_artifact_on_my_SDS-PAGE_gel/attachment/632628ae0c295f1f9ad6dffc/AS%3A11431281084858758%401663445164888/image/091602after+ion+exchange.jpg)
I have a UHV magnetron sputter system that had an issue with the mass controller gate. I had to send the gate for repairs, so the system has been open for a while. So, in order to achieve high vacuum, it will likely need a bake-out to reduce the contaminants after the gate is reattached. I was hoping to get some advice as to the process I should use, and anything I should keep an eye out for.
I have been performing 384 well affinity ELISA. where I continuously encounter random higher readings in the sample dilutions. I can't figure out the reason for it. Tried almost everything that could contaminate the plate andd result in this but of no results. Can anyone justify this action.?
Dear fellow Researchers,
I have a question - can anybody explain, show literature sources or in any other way guide our team in the complex topic of mechanisms of uptake of organic contaminants esp PFAS in mushrooms? In our recent, not published yet, research we have found that accumulation of PFAS in mushrooms (A. bisporus and A. subrufescens) was low and strongly chain length dependent. Namely, short chain PFAS were accumulated easier than long chained. However, despite our best trials we failed to find enough literature to explain the mechanisms. Surely this is related to bioavailability, and for sure also to the easiness to be transferred within the mushroom body.
Sincerly,
Agnieszka Jasinska
I am working on isolation of PGPR from the turmeric plant but fungal growth contaminates and bacterial isolation is not done properly.
The major difference between bimetallic and monometallic nanoparticles which can be applied for remediation purpose. In what context, the bimetallics are more useful than NZVI or monometallics even though NZVI has better removal efficiency. As per previously published literatures, NZVI can remove organic and inorganic contaminants up to ~90% and above. So, why will we use bimetallic instead of NZVI? By using which property of bimetallic, this can be used instead of NZVI? What could be the proper reason for using bimetallic instead of metallic for environmental remediation application? Please explain in details. Thank you.
tldr; we're having massive contamination in our bacterial agar plates, and cannot figure out where it's coming from, even with testing. It doesn't appear to be coming from our autoclave, the Petri dishes, the agar media, the room, etc. I need to pour 1500 more plates by the end of the month but can't keep having 50-100% contamination when I pour.
I work as the lab manager for the biology teaching labs at my university, and pour over 10,000 agar plates every year (almost 20 different kinds) for the students. We didn't have any issues until November of 2021, when we started seeing massive contamination issues on our bacterial plates, and we've yet to figure out where it's coming from. I would love to hear some perspective from others to see if there's anything obvious I'm missing or something we should try differently.
Our plate pouring background:
We pour all of our plates by hand. Typically, we'll make 3 x 3L of media at a time, autoclave the media (45 minutes), let them cool to ~55-65C, and then pour. We do our pouring in a UV room, where we disinfect the bench top with lysol and then ethanol, and then leave the UV light on for at least 15 minutes. I often will come back after the 15 minutes, lay ~50 Petri dishes, and then turn the UV light back on for another 15 minutes. To pour, we use a Bunsen burner to thoroughly flame the neck of the 6L erlenmeyer of media, then we pour some of it into a sterile 500 mL erlenmeyer (which was also flamed). We again flame the neck of the 500 mL erlenmeyer, and then pour. If any media drips down the side, we wipe with a paper towel, flame again, and continue. After we fill all of the plates on the bench, we'll put a second layer of plates down and continue. 9L of media gets us 275-325 plates. After about 30 minutes, we flip them. We normally would let them sit out for 1-3 days, then put them back in their sleeves, and store in our cold room until needed. Most of the plates are used within six months, but we can sometimes use them a year or 18 months later with no issues. Normally we see less than 10% of plates becoming contaminated. This is how things have been done for years (decades) by many people before me.
The problem:
Last fall, we pulled out some bacterial plates (LB, lambda, and TKC) to use for the students, and found that they were contaminated. In November, I decided to pour more to make sure that we had enough. 100% of these were contaminated. We tried pouring again. More than two-thirds were contaminated. And we tried again. Same result. We've poured over 40 batches of plates since then (over 6000 plates), and our results are all over the place. We'll go through periods where 100% of the plates are contaminated, and then we'll get a couple batches that are okay. There's no rhyme or reason that we can find.
In the beginning of May 2022, we poured 12 batches (close to 1000 plates), and most of them had negligible amounts of contamination. But then halfway through May, we started seeing contamination again. We've now started seeing contamination again out of the blue. We're at a complete loss for where it's coming from.
The contamination itself is these tiny white/yellow/pinkish specks floating in the agar (not just on top). It looks like snow from a snowglobe, scattered throughout the plate. It takes about 3-5 days at room temperature for us to see it start growing. And it smells terrible if we leave it too long. With our bacterial plates, we now leave them out for 5 days before packaging, just so that if there is contamination, we'll be able to see it and discard those plates.
Since we typically do three large flasks at a time, we try to keep track of which plates were from which flask. Sometimes, an entire flask-worth of plates will be contaminated. Other times, it's random plates in the batch, with non-contaminated plates in between contaminated ones.
Oh, an an important thing - we do not see any contamination whenever ampicillin or kanamycin are added to the agar media for the plates. So whatever it is, it's killed off by those antibiotics.
Things we've tested:
The autoclave:
- First thing to note is that none of our liquid media has ever been contaminated during this whole ordeal. We make a bunch of liquid media and keep it for a while (months), and we have had zero bottles of media show contamination.
- There was a period of three or so months where our autoclave was the only operable one in the building, and I had about 20 other people using it. No one else ever had contamination or sterilization issues while using our autoclave. (Our contamination issues started a couple months before this)
- Our autoclave is serviced every 3 months. It passes their inspection every time.
- Originally, we used foam stoppers in the necks of the erlenmeyer under the foil. We tried getting rid of the foam stoppers and just using foil, but aren't seeing a difference.
The agar media:
- As stated above, the liquid media has had no contamination.
- I have tried autoclaving the agar media and then just leaving it in the flasks to see if anything grew, but we didn't get any contamination.
- We have tried reserving small amounts of agar media in the flasks when we're done pouring, so that we can see if contamination grew in the flasks if we saw it in the plates. However, whenever we've done this are of course the times that we don't see contamination in the plates, so it's not super helpful information. It's hard for us to do this all the time, because we need to use the flasks and not let them sit around for five days while we wait.
- We already use Millipore DI water to make our agar, but we decided to change out the tubing on the end of the system and also we autoclaved our water carboys in case that could be a cause of contamination (although it all gets autoclaved again with the media, so it shouldn't matter, but we are desperate and will try anything).
Pouring method:
- We've had four different people pouring, all of which seem to have the same issues.
- We decided to try using a pump to pour for the first time last week. The test batch (2L) looked good. The second batch (3 x 3L) has issues - at least a third of the plates were contaminated, and we're waiting to see if any more have issues. What's extra confusing is that the contaminated plates were from the flask that was poured first, and my coworker did not change the pump's outlet tubing, so we can't figure out how the second and third flasks of plates don't have contamination since they were using the same output tubing as the contaminated flask!
- We tried flaming the top of the plates after pouring (which we do to get rid of bubbles, but we started doing it to all the plates in case it helped). This did not have an effect. The contamination is in the agar anyways, so I didn't expect it to help.
- We've also been using plates from all different manufacturers due to supply chain issues (Fisher, VWR, Corning, etc), and there's no difference, so the contamination isn't from the Petri dishes themselves.
Location:
- When this started happening, I disinfected EVERYTHING in our pouring room - the walls, the ceiling, the floor, everything. I used disinfectant spray and ethanol. I changed the UV bulbs to new ones. We left the UV light on for a couple hours. This did not help.
- I tried leaving some bacterial plates open in our pouring room. 30 minutes of being open did not show contamination (I closed them then let them sit out). When I left them open for 24 hours, I did see some contamination. But when we pour plates, the Petri dishes are open for just seconds, so I don't know how the 24 hour window would correlate.
- We started pouring in different places. We've poured in three other lab spaces, and the contamination seems just as random. We've tried pouring in UV hoods. Still no difference.
- One thing I will note is that we had some summer programs, and some students swabbed the bench top in our plate-pouring room, grew out the bacteria, and sent it for sequencing. It came back as Staphylococcus hominis. Now I will say that we had not done our normal sterilizing procedures (disinfectant, ethanol, then UV light) before they swabbed, and if that is indeed the contamination, I'm not sure why the disinfection methods don't kill it. Also, I'm not sure how that bacteria would get from the tabletop into the plates, and be spread so thoroughly throughout the agar. We constantly ethanol our gloves (and we always wear our gloves when pouring), so it seems unlikely that we're transferring it. And why would it happen now, after years and years of not being an issue?
I need to pour 1500 more lambda plates before the end of the month for students, but I can't keep pouring batches of 300 plates where I throw out 250 of them! If you have any ideas of what I can try or where the problem might be coming from, I'd greatly appreciate any insight!
Dear ResearchGate community,
Looking for expertise in the use of dialysis for metabolomic sample prep. Ideal scenario: isolate 300 microliters of plasma, set up dialysis against ~50 microliters of receiver fluid (water or saline), wait, and harvest the 50 microliters of receiver fluid. The receiver fluid would be enriched in mobile, ionic metabolites - ideally their concentration would be 86% (300/350 x 100%) of the original plasma concentration.
Can this scenario work in practice? I've found membranes with nominal pore sizes suitable to do the job, but this application is so different from the "normal" one (depleting protein-rich solutions of contaminants) that I sense there must be some special considerations...
Or is as simple as mounting a 10K membrane in a suitable custom cell (dimensions for these quantities?) and forging ahead?
Thanks for any thoughts. They are much appreciated.
-Tony
Please indicate if the limits set are in the bioavailable forms or totals.
Hi! we had a cell culture contamination for several weeks in two different cell lines. We have discarded all reagents and started all over with other batch of cells, all seemed to be okay but 10 days later we have the same contaminant, we don't know what is.
The medium has str/pen, and the particles are line shaped, are translucid, and difficult to see. They are moving and floating, and change the medium color to yellow.
We have incubated the medium and FBS but nothing grew.
¿what could we do?
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Algal biomass, pharmaceutical contaminant
One method for microplastics analyses suggests cleaning glassware at 450 C, but we are unable to attain those temperatures. I have seen a variety of methods in different studies ranging from rinsing with de-ionized water, rinsing with methanol, or heating at 120 C for four hours.
I'm cultivating intestinal organoids from Adults rats...but even using antibiotics, the cell culture always contaminates.
- While many authors applied the van't Hoff equation for the calculation of the thermodynamic parameters of the adsorption, but there is widespread misuse of adsorption isotherm constants or distribution coefficient instead of the dimensionless thermodynamic equilibrium constant.
- The following papers have discussed this issue thoroughly, but there is a clear conclusion or compromise:
[78] H.N. Tran, S.-J. You, A. Hosseini-Bandegharaei, H.-P. Chao, Mistakes and inconsistencies regarding adsorption of contaminants from aqueous solutions: a critical review, Water research, 120 (2017) 88-116.
[79] F.-D. Kopinke, A. Georgi, K.-U. Goss, Comment on “Mistakes and inconsistencies regarding adsorption of contaminants from aqueous solution: A critical review, published by Tran et al.[Water Research 120, 2017, 88–116]”, Water research, 129 (2018) 520-521.
[80] X. Zhou, X. Zhou, The unit problem in the thermodynamic calculation of adsorption using the Langmuir equation, Chemical Engineering Communications, 201 (2014) 1459-1467.
[81] E.C. Lima, A. Hosseini-Bandegharaei, J.C. Moreno-Piraján, I. Anastopoulos, A critical review of the estimation of the thermodynamic parameters on adsorption equilibria. Wrong use of equilibrium constant in the Van't Hoof equation for calculation of thermodynamic parameters of adsorption, Journal of Molecular Liquids, 273 (2019) 425-434.
[82] A. Fenti, P. Iovino, S. Salvestrini, Some remarks on “A critical review of the estimation of the thermodynamic parameters on adsorption equilibria. Wrong use of equilibrium constant in the Van't Hoof equation for calculation of thermodynamic parameters of adsorption”-Journal of Molecular Liquids 273 (2019) 425–434, (2019).
[83] E.C. Lima, A. Hosseini-Bandegharaei, I. Anastopoulos, Response to “Some remarks on a critical review of the estimation of the thermodynamic parameters on adsorption equilibria. Wrong use of equilibrium constant in the van't Hoff equation for calculation of thermodynamic parameters of adsorption-Journal of Molecular Liquids 273 (2019) 425–434.”, Journal of Molecular Liquids, 280 (2019) 298-300.
[84] S. Salvestrini, V. Leone, P. Iovino, S. Canzano, S. Capasso, Considerations about the correct evaluation of sorption thermodynamic parameters from equilibrium isotherms, The Journal of Chemical Thermodynamics, 68 (2014) 310-316.
Can anyone help me to reach a solution?
Thanks
I'm doing a yeast display experiment and have been sorting yeast cells (S. cerevisiae) with a BioRad cell sorter.
In the later rounds I've started getting contaminants on the plates. Some plates do not have any contaminants at all. In other instances it's quite possible that the contaminant is being passaged along with the sorted cells (although I'm gating a double positive population...)
The colonies have a raised margin and in some instances a "button" in the middle. The attached pics have a 200 ul pipette tip for scale; there are also some typical S. cerevisiae colonies visible in the images.
Details:
Plates: synthetic complete - trp, dextrose, pen-strep. ~2 weeks old and stored at 4C.
Growth: 2 days at 30C. Incubator is also used for E. coli plates.
Yeast strain: S. cerevisiae BJ5465
Plasmid: gal promoter so there should be no cell surface display of the DARPin library.
Cell sorter: BioRad S3. The sorting chamber is not sterile. Only yeast cells have been sorted recently although some Corynebacterium cells were analyzed in the same time frame (different days though) that yeast were sorted.
Thanks for any ideas!
![](profile/Mark-Arbing/post/Can_anyone_identify_this_contaminant_on_my_yeast_plates/attachment/625f29df98661c036e0b2203/AS%3A1146690832732161%401650403807549/image/PXL_20220419_210118482.jpg)
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I am bead-beating coral tissue (containing intracellular algae, bacteria, the coral animal, and a brittle coral skeleton) for up to 5 minutes (with 1-minute cooling breaks every 40 seconds) in Trizol. I found an interesting relationship between the duration of bead beating and the 260/280 and 260/230 ratio - the longer I beat the samples the more the ratios are impacted (more protein, salts, phenol, or other contaminants in the RNA extract). It also appears that the quality of the extracts is related to the 340 absorbances.
What could be happening here? Is it possible that the coral skeleton buffers the acidic solution and therefore more proteins, salts, or phenol make it into the aqueous layer? Or potentially it allows the extraction of more starches or other contaminants? There seems to be a clear relationship with the 340 absorbance values.
I'd appreciate any thoughts related to this. Thanks in advance for your assistance :D.
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In Phytoremediation contaminant reclamation or waste treatment occurs in the form of their accumulation or adsorption. My query is; What is the fate of those plants after treatment? Is there any method available for there safe and harmless disposal? Is there any protocol or any standard guideline available regarding the same?
Which can help us in finally getting rid of these contaminants?
Would you advise me if it is better to buy a UV lamp 365nm 100W for water purification from contaminants? from where i can buy it?
I'm asking about reaction parameters
- Grit formation
- Stabilization
- Product performace
- Kinetics
📷
I am looking at the fate and transport of methylmercury in a specific place here in the Philippines, can anyone suggest on what my furst step should be? Follow up, i'll also be looking at the effects on the increase in uptake of methylmercury in the trophic level.
Polychlorinated biphenyls are toxic contaminants in water.There is a need to remove it.Which are the latest methods adopted to remove it?
What are the prohibited substances considered to contaminate the x-ray photoelectron spectroscopy (xps) analysis chamber?
I am venturing on microplastics or other contaminants that can be eliminated in water, wastewater or even sediments using electron beam technology.
Geo-Environmental Engineering is concerned with engineering solutions relating to environmental impacts of contaminants within soils, and includes such aspects as understanding the migration, interactions and fate of contaminants, the protection of uncontaminated regions, the remediation or clean up of contaminated sites. It requires an understanding and knowledge of the relevant principles of chemistry, biology and physics, types of contaminants, geosynthetic and other barriers and containment systems, regulatory requirements and site remediation technologies. It entails site investigation, sampling approaches and methods, modelling, assessments, treatment and control strategies.
There are many ways of detecting contaminants using SERS.
However, in those cases, they try to detect contaminants or substances without considering adsorption state.
How can i detect contaminants (or substances) adsorbed on the surface of microparticles using SERS?
ICP-OES helps to quantify the various environmental contaminants and is used as the Environmental safety assessment. However, ICP MS is especially used for analyzing samples with low regulatory limits. So, I was kind of interested to know why ICP-OES has higher tolerance towards Total dissolved solids in any samples compared to that of ICP-MS?
I am looking for information on the chemical composition of reaction water produced by a PEMFC during operation. Is it pure water? Does it contain any contaminant species?
it is being two months at different times and different situations, i face these [ short video attached] specific contaminants. the cells i got them from different individuals. i have checked all culture materials and medias at different instances: like incubating media alone, filtering medias, changing gloves, wearing long protection gloves, sterilized tips...etc. all come out negative. in addition the incubator and laminar flow hood is used by others no such instances, at least for those whom I ask. more clarification can be provided upon request. so i am curious what is the main source of these contaminants and in which material might be.
any sort of solution is of paramount importance.
I was clearing a cabinet and I have found this plate from November 2021.
It is LB Agar with Neb10 competent cells.
The contaminants seem bright orange.
![](profile/Macarena-Fernandez-Carro/post/What_bacteria_could_these_be/attachment/61e5b426d248c650edc0ddc6/AS%3A1113304202252290%401642443814440/image/16424437953792104610184569365201.jpg)
Recently the AlGaAs and InGaAs samples I've been growing by MOCVD haven't been producing any PL. The AlGaAs samples are bulk and QW structures (AlInGaAs), whereas the InGaAs is the cap/contact layer from a laser structure.
I've ruled out any issue with our PL system as remeasuring older samples gives the same results, and other materials and structures give strong signals - interestingly, InGaAs QWs do produce PL. XRD measurements show no degradation or change in our crystal quality, and the contact resistance of the InGaAs cap layers is also unaffected. I've also ruled out any issues with my Al sources as best I can, and any problems with the reactor by inspecting, cleaning, and changing the chamber furniture.
Our current "best" theory is that we are incorporating some sort of contaminant or defect (possibly vacancies?) from our AsH3 source, which is a couple of years "out of date" (it's a large cylinder and we didn't want to throw away "good" gas). We've attempted to identify possible culprits using SIMS, but there's no trace of any contaminant - of course, they could be at such a low level that they aren't detected efficiently...
Has anyone had a similar experience, or know anything about how an AsH3 degrades or "fails" over time? Or, alternatively, does anyone have any suggestions about an explanation for what we are seeing?
To summarise, recently grown Al(In)GaAs and InGaAs samples do not produce any PL. Whatever the cause is, it does not appear to affect the crystalline quality, composition, contact resistance, or morphology of the samples. SIMS analysis has not identified any source of contamination.
-The atomic radius of lanthanum is approximately 0.35 nm, as opposed to 0.3 nm for water molecules.
-Seawater sample also contain organic contaminants such as Mg, Na, etc. some of them with the same molecular size as lanthanum.
I run a model on an aquifer with 3 layers. the contaminant is leaching on the upper layer. At the point of entry, the contaminant concentration is constant at 0.1 mg/m³.
I am having a hard time selecting the appropriate option in Sink/Source Concentration under MT3DMS/SEAWAT model as the options available are Constant head cells, well, river, and time-variant specified concentration.
Also, no recharge is applied to this model.
Hello, guys. I'm a master student working with the domestication of wild strains of edible mushrooms from Brazil and during the process of isolation and maintenance of the strain cultures, sometimes we deal with a few filamentous fungal contaminants.
And I was wondering if there were any works published on common fungal contaminants in agar cultures of mushrooms and/or identification keys.
I am looking for articles or case studies that quantify how long and by what method an education and outreach campaign persists long-term. I am looking for environmental campaigns but would take input from the health sector too. For example, if a recycling program provides multiple targeted education and outreach "touches" to get households to recycle a particular commodity or keep a particular contaminate out, how long would one expect that the change would last before needing to go back into the community and message again as a reminder? Any research with not only short-term evaluation results but an analysis showing "long-term" change using targeted outreach for an environmental action would be welcome.
I try to find any food borne pathogen can live in mollasese with its high sugar percentage and low water activity, idid not find. I knew that mollase has antimicrobial activity but is there any evidence that it can contaminate with pathogens which infect human
We have a stock of pure 99.98% pharmaceutical grade DMSO and we recently ran a UV abs test for 285/275 whch resulted in 0.68 and it is above the 0.65 USP standard.
We are trying to find out the cause of this unplanned degradation, those DMSO are individually aliquoted inside a sterile clear glass bottle in ~50ml and a non-reactive rubber stopper is used together with aluminum cap and stored for about 3 months at room temperature.
Would the UV in office setting light cause a noticeable degradation? or because we did not nitrogen flush the space or maybe some kind of contaminants is introduced?
I am not certain with the introduction of contaminants because the entire batch was affected, unless the tech introduced large amount of weird stuffs by accident such as forgot to rinse the sterile filling nozzle after detergent/chemical treatment. Just by introduce a few droplet of water should not have such strong effect.
Can anyone work closely with pure DMSO shed some light?
Thank you
Hi everyone,
Can anyone please help me identify this contaminant in my cell culture?
All the best and many thanks,
Alfred
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Trying to find out or polluted soils and water around orchads can contaminate or not the plants and how can we measure the amounts or the heavy metals both in soils and water as well as in the différent parts of the plants.
I was able to find in the internet a study by IVLV but it needs membership to access it. I am looking for a method of applying the contaminant and how to heat-seal the contaminated film in the heat-sealer without destroying the seal bar of a heat-sealer. Thank you.
I want to run a correlation matrix analysis between multiple response variables. The data was obtained from the operation of a continuous bioreactor over a 330 days period, but the operating conditions were changed every three months. I am not sure if I have to run a correlation test for each operational strategy (i.e. the condition that was changed every three months - in this case was the concentration of a contaminant) or if I can run a single test for the whole operation of the reactor.
The results make more sense if I run a single test, but I am not sure if I can do that assuming the conditions were changed. But I know that, for environmental analyses as whole, it is quite common to run correlation analysis even when there are other factors changing over time.
A number of studies say they "predialyzed" albumin to remove contaminants but none explain how this is done. I would be very grateful to know what predialysis decontamination protocols have worked in your experience.
Hi all,
I'm writing a method determination of trace metals in seawater, our main contaminant is Arsenic. I have been searching what guidelines to use. I am in Australia and I have found at waterquality website from the government that EPA methods can be used. I have found methods 6020A and 6020B. As far as I understood B is not only a revision of A.
Does someone have some insight in it?
Cheers,
Nathalie
Can someone suggest Buffers that have little interference in adsorption studies or photodegradation studies? pH, type of contaminant and it's concentration will have effect on the final value.
Hello,
I am analyzing mass spectrometry data using the Bovine Fasta File in MaxQuant. When I remove the contaminants with Perseus, I am losing many proteins that should not be contaminants.
I know you can modify this list of contaminants on MaxQuant and Perseus but, do you know if it is available an updated Bovine Fasta File to avoid doing this?
Thank you very much.
Please, Could any one suggest for me a journal with rapid publication in the field of environmental science, health and pollution, a journal indexed in Web of Science, Scopus, low IF, and without fees, to publish my research paper.
Thank you.
Hallo! Does someone have experience culturing cells derived from infectious samples?
I would like to isolate the bone marrow mesenchymal stem cells from patients diagnosed with bone infection and culture them. The only problem is that the tissue would be infectious with bacteria inside. Some of the bacteria might be also multiresistant. If I culture them in the incubator, there might generate bacteria membrane, and even contaminate other cell wells. Is there any good idea how I can eliminate these bacteria and culture these stem cells?
Hi all,
As far as I know, HOMO and LUMO energy levels of organic contaminants are direct involved in the mechanism of some applications such as SERS sensor, photocatalysis, or catalytic reduction. However, I had some trouble when finding reports that gave specific values for the HOMO and LUMO energy levels of organic contaminants. Therefore, how to search the HOMO and LUMO energy levels of some pesticides (Thiram, 4-nitrophenol, tricyclazole...) and antibiotics (chloramphenicol, amoxicillin...)?
Appreciate all answers!
Hello all.
I was wondering if anyone has any experience with adding ampicillin to the medium in which a fungi is stored and what concentration is best to use?
I know normally there shouldn't be any of the antibiotics and if, the one usually added is CHL but that's the decision that was made. So does anyone have a suggestion on what concentration is suitable to grow the fungi and inhibit any possible contaminants?
Thank you for the help in advance have a lovely weekend.
Best regards, I.
Hi,
Could anyone help me out to get rid of contaminants in my protein purification?
It is his tag protein and traying to purifying using Ni-NTA. Expression system, BL21
A gel picture is attached with all lanes' descriptions.
![](profile/Om-Narayan-3/post/How_can_I_get_rid_of_contaminants_in_my_protein_purifications_Protein_is_His_tagged_and_using_Ni-NTA/attachment/60ef0a672897145fbd6134e5/AS%3A1045173454766080%401626200178748/image/SDS_PAGE+Protein+purifcation.jpg)
How to deal with mycoplasma contaminant in cell cultures? The growth of my cells was obviously hampered.
Hello everyone,
I'm currently trying to sequence SARS-CoV-2 genomes at the medical lab I am working at. I am using the improved ARTIC protocol (Eco PCR tiling) and an ONT MinION.
After some initial difficulties, I was able to perform 2 sequencing runs which yielded a coverage of >95% for almost 50% of the samples.
However, the past two runs were much worse and I don't really know what the problem is. I can think of two things that might be the problem: a) the extraction method I am using (maybe there are too many contaminants present?) and b) I so far haven't diluted samples samples with lower ct values.
Does anyone have any suggestions on where to troubleshoot?
Thanks in advance!
We are working with a media change device that has silicone tubing. We have seen cytotoxic results with this device. Since then we have been running our culture media (alphaMEM, sodium bicarb, 10% FBS, 1% p/s, normicin) through the silicone tubing and culturing.
On the day of running media through we see little-to-no debris in the well, no obvious signs of contaminates.
Three days later we see the first image (L6230169, 40X Objective, scale bar is not accurate), where there seems to be a lot of little particle and aggregates. The media is not turbid, and there appears to be some locomotion of the smaller particles that I don't believe is Brownian. The second image (L6230172, 40X Objective, inaccurate scale bar) is two days after the first image (5 total).
So far we have tested on nutrient agar plates (negative), for mycoplasma (negative), and for endotoxin (negative). I'm not sure what to look for/how to text next. Any advise is appreciated!
Based on your knowledge, information and research;
- What are the most pollutants which are in the seawater, in addition to oil, plastic and microplastic pollution? (Type Organic/Inorganic/Thermal/Radioactive/Nutrients, etc. + Name of contaminant please)
- What is the biggest source of it?
- Which modern technologies, methods and approaches are being used to tackle/control pollution?
The use of antibiotics, preservatives and similar chemicals is aimed to be avoided in cultures. Since isolations without the use of antibiotics and preventive chemicals is my goal, latent bacterial and sometimes fungal contamination is encountered. Does anybody has experience treating source plants with any preventive chemicals or antibiotics few days or weeks prior to isolation to reduce or eliminate the internal contaminants?
Any recommendations/suggestions will be highly appreciated.
I am trying to develop a WASP8 model that can predict the dispersion of contaminants in seawater. Before I do a sensitivity analysis, I wanted to know if the flow of discharge has any effect on the disperison.
Thank you