Zhenwu Du's research while affiliated with Jilin University and other places

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Publications (54)


Association of the paired gene–gene interactions of 17 variants in Wnt/β-catenin pathway with the risk, hip lesions, and clinical stages of ONFH. The chromosomes are arranged end by end in a clockwise direction. The exterior of the circle is chromosome number and scale. The inner circle represents the gene where the variant is located. The innermost part is ID of the variant. The lines connecting two variants represents paired gene–gene interactions. The red lines represent interactions with OR > 1 while the blue lines represent interactions with OR < 1. In addition, the color shade and lines thickness indicate whether the interaction is statistical significance: the thinnest and lightest lines represent interactions with no statistical significance (P > 0.1), the middle ones represent interactions with 0.05 < P < 0.1, and the thickest and the darkest lines represent interactions with P < 0.05. (a) The paired gene–gene interactions of 17 variants in Wnt/β-catenin pathway with the ONFH risk. (b) The paired gene–gene interactions of 17 variants in Wnt/β-catenin pathway with the unilateral and bilateral hip lesions of ONFH. (c) The paired gene–gene interactions of 17 variants in Wnt/β-catenin pathway with the clinical stages of ONFH. Gsk3β, glycogen synthase kinase 3 beta; LRP5, LDL receptor related protein 5; SFRP4, secreted frizzled related protein 4; EPDR1, ependymin related 1; LOC105375236, uncharacterized LOC105375236, LncRNA.
Analysis of serum lipid levels between ONFH and Control groups. *P < 0.05; ***P < 0.001.
Analysis of PLT related parameters between ONFH and Control groups. ***P < 0.001.
The effects of genotypes of eQTLs variants in Wnt/β-catenin pathway on gene expression in different tissues.
17 variants interaction of Wnt/β-catenin pathway associated with development of osteonecrosis of femoral head in Chinese Han population
  • Article
  • Full-text available

March 2024

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3 Reads

Scientific Reports

Chuankai Shi

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Xin Li

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Yu Sun

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The genes of Wnt/β-catenin pathway may have potential roles in fat accumulation of Non-traumatic osteonecrosis of the femoral head (ONFH), but the effects of their variants in the pathway on ONFH development have been remained unclear. To explore the potential roles of the variants in the development of ONFH, we completed the investigation of the paired interactions as well as their related biological functions of 17 variants of GSK3β, LRP5, and FRP4 genes etc. in the pathway. The genotyping of the 17 variants were finished by MASS ARRAY PLATFORM in a 560 ONFH case–control system. The association of variants interactions with ONFH risk and clinical traits was evaluated by logistic regression analysis etc. and bioinformatics technology. The results showed that the genotype, allele frequency, and genetic models of Gsk3β rs334558 (G/A), SFRP4 rs1052981 (A/G), and LRP5 rs312778 (T/C) were significantly associated with the increased and decreased ONFH risk and clinical traits, respectively (P < 0.001–0.0002). Particularly, the paired interactions of six variants as well as eight variants also showed statistically increased and decreased ONFH risk, bilateral hip lesions risk and stage IV risk of ONFH, respectively (P < 0.044–0.004). Our results not only at the first time simultaneously showed exact serum lipid disorder and abnormal platelet function of ONFH in the same study system with the 17 variants polymorphisms of Wnt/β-catenin pathway but also shed light on the variants closely intervening the lipid disorder and abnormal coagulation of ONFH.

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Hair follicle mesenchymal stem cell exosomal lncRNA H19 inhibited NLRP3 pyroptosis to promote diabetic mouse skin wound healing

February 2023

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62 Reads

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17 Citations

Aging

Skin wounds caused by diabetes are a major medical problem. Mesenchymal stem cell-derived exosomes hold promise to quicken wound healing due to their ability to transfer certain molecules to target cells, including mRNAs, microRNAs, lncRNAs, and proteins. Nonetheless, the specific mechanisms underlying this impact are not elucidated. Therefore, this research aimed to investigate the effect of MSC-derived exosomes comprising long non-coding RNA (lncRNA) H19 on diabetic skin wound healing. Hair follicle mesenchymal stem cells (HF-MSCs) were effectively isolated and detected, and exosomes (Exo) were also isolated smoothly. Pretreatment with 30 mM glucose for 24 h (HG) could efficiently induce pyroptosis in HaCaT cells. Exosomal H19 enhanced HaCaT proliferation and migration and inhibited pyroptosis by reversing the stimulation of the NLRP3 inflammasome. Injection of exosomes overexpressing lncRNA H19 to diabetic skin wound promoted sustained skin wound healing, whereas sh-H19 exosomes did not have this effect. In conclusion, Exosomes overexpressing H19 promoted HaCaT proliferation, migration and suppressed pyroptosis both in vitro and in vivo. Therefore, HFMSC-derived exosomes that overexpress H19 may be included in strategies for healing diabetic skin wounds.


Identification of optimal reference genes for gene expression normalization in human osteosarcoma cell lines under proliferative conditions

December 2022

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54 Reads

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5 Citations

Frontiers in Genetics

Frontiers in Genetics

The molecular pathogenesis and therapeutic target research studies on osteosarcoma (OS) have developed well during the last few years using various OS cell lines with reverse transcription quantitative polymerase chain reaction (RT-qPCR). However, the identification of suitable reference genes of RT-qPCR for OS cell lines has not been reported. Here, we conducted the normalization research of 12 reference genes (GAPDH, ACTB, 18S, B2M, ALAS1, GUSB, HPRT1, HMBS, PPIA, PUM1, RPL29, and TBP) for gene expression analysis in four kinds of human OS cell lines (U2OS, Saos-2, HOS, and MG-63) to improve the investigation of molecular mechanisms and the accuracy of diagnosis and prognostic molecular targets of OS. The gene expression stability and applicability of the 12 reference gene candidates were determined using geNorm, NormFinder, and BestKeeper software. The results indicated that PUM1 and the combination of PPIA + ALAS1 were recommended as the optimal reference gene in these four different sources of human OS cell lines under proliferative conditions. The present study identified the most suitable reference genes and reference gene combinations for OS cell lines under proliferative conditions in order to use in gene expression profile analysis. A reliable standardized method has the potential to improve the understanding of the biological mechanisms underlying OS in the future.


Single nucleotide polymorphisms in the GFR-related gene and the SNP–SNP interactions on the risk of diabetic kidney disease in Chinese Han population

November 2022

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11 Reads

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1 Citation

Acta Diabetologica

Purpose: Genetic susceptibility is an important pathogenic mechanism in diabetic kidney disease (DKD). However, the specific gene variant associated with DKD susceptibility remains unclear. Glomerular filtration rate (GFR), an important indicator for the process of DKD, has a heritable component. This study aimed to explore whether these GFR-related single nucleotide polymorphisms (SNPs) were associated with DKD. Methods: GFR-related SNPs were collected from the Phenotype-Genotype Integrator (PheGenI) database. SNPs for population cohort analysis were selected following the criteria of complete records of eQTL and MAF > 5% in the Chinese Han population. Totally 498 subjects participated, including166 patients with DKD, 166 patients with T2DM, and 166 controls. The genotypes of SNPs were determined using a Sequenom MassARRAY system. Plink software was employed to analyze the SNP-SNP interactions. Results: By screening the GFR-related SNPs recorded in the PheGenI database, four SNPs (rs1260326, rs17319721, rs35716097, and rs6420094) were finally selected to investigate the association with DKD. It was shown that one of the four SNPs was related to DKD. The G allele of SLC34A1 rs6420094 was associated with a decreased risk of DKD in DKD and T2DM groups (OR 0.716; P = 0.049). Genetic model analysis revealed that rs6420094 was a protective factor for DKD in T2DM in a dominant model and an additive model (P = 0.03; P = 0.032, respectively). Although rs17319721 was not associated with the risk of DKD, the SNP-SNP interactions between rs17319721 and rs6420094 predicted a significantly decreased risk of DKD (OR 0.464; P = 0.047). Conclusion: SLC34A1 rs6420094 was associated with a decreased DKD risk in the Chinese Han population. SNP-SNP interaction between rs17319721 and rs6420094 was associated with a lower risk of DKD.



Bombyxin II Regulates Glucose Absorption and Glycogen Synthesis through the PI3K Signaling Pathway in HepG2 Cells

October 2021

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71 Reads

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2 Citations

Bombyxin, as an insulin-like insect hormone, was discovered in the silkmoth Bombyx mori. It can regulate the metabolism of trehalose and glycogen in Bombyx mori, but whether it has glucose absorption and glycogen synthesis effect on mammalian cells was not clear. BombyxinII (BbxII) and mutant BbxII (mBbxII) genes were cloned into pcDNA3.1(+) vector, respectively; then, gene vectors were transfected into 293FT cells using Lipofectamine 2000. Levels of mRNA and protein expression of BbxII and mBbxII were detected by PCR and Western blot in 293FT cells, respectively. Glucose consumption and glycogenesis were determined by glucose oxidase-peroxidase (GOD-POD) and periodic acid-Schiff (PAS) staining in HepG2 cells; the PI3K signaling pathway was inhibited with wortmannin S1952 in HepG2 cells. Result showed that BbxII and mBbxII genes were being successfully expressed in 293FT cells, respectively. The expression protein of BbxII gene is 10kd pre-bombyxinII, and yet, the expression protein of mBbxII gene is 4kd mature bombyxinII. Only the 4kd bombyxinII showed increased glucose uptake and glycogenesis in HepG2 cells, and the ability of increasing glucose uptake was equal to the human insulin (10 nM). PI3K-wortmannin S1952 inhibitor can decrease the glycogen synthesis induced by bombyxin II protein in HepG2 cells. In conclusion, mature bombyxin II may adjust glucose absorption and glycogen synthesis in HepG2 cells through the PI3K signaling pathway.


Expression of TMEM16A in Colorectal Cancer and Its Correlation With Clinical and Pathological Parameters

March 2021

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78 Reads

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5 Citations

TMEM16A is a recently identified calcium-activated chloride channel (CaCC) and its overexpression contributes to tumorigenesis and progression in several human malignancies. However, little is known about expression of TMEM16A and its clinical significance in colorectal cancer (CRC). TMEM16A mRNA expression was determined by quantitative real time-PCR (qRT-PCR) in 67 CRC tissues and 24 para-carcinoma tissues. TMEM16A protein expression was performed by immunohistochemistry in 80 CRC tissues. The correlation between TMEM16A expression and clinicopathological parameters, and known genes and proteins involved in CRC was analyzed. The results showed that TMEM16A mRNA expression was frequently detected in 51 CRC tissues (76%), whereas TMEM16A protein expression was determined at a relatively lower frequency (26%). TMEM16A mRNA expression in tumor tissues was higher than its expression in normal para-carcinoma tissues (P < 0.05). TMEM16A mRNA expression was significantly correlated with TNM stage (p = 0.039) and status of lymph node metastasis (p = 0.047). In addition, there was a strong positive correlation between TMEM16A mRNA expression and MSH2 protein. More importantly, TMEM16A protein expression was positively associated with KRAS mutation, and negatively correlated with mutant p53 protein. Logistic regression analysis demonstrated that TMEM16A mRNA expression was an important independent predictive factor of lymph node metastasis (OR = 16.38, CI: 1.91–140.27, p = 0.01). TMEM16A mRNA and protein expression was not significantly related with patient survival. Our findings provide original evidence demonstrating TMEM16A mRNA expression can be a novel predictive marker of lymph node metastasis and TMEM16A protein expression may be an important regulator of tumor proliferation and metastasis in CRC.


Identification of biomarkers associated with synovitis in rheumatoid arthritis by bioinformatics analyses

August 2020

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84 Reads

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8 Citations

Bioscience Reports

Objectives: RA is the most common inflammatory arthritis in the world, but its underlying mechanism is still unclear. This study aims to screen and verify the potential biomarkers of RA. Methods: We searched the GEO database for synovial expression profiling from different RA microarray studies to perform a systematic analysis. Functional annotation of DEGs was conducted, including GO enrichment analysis and KEGG pathway enrichment analysis. The PPI networks of the DEGs were constructed based on data from the STRING database. The expression levels of the hub genes in normal membranes and RA synovium were detected by qRT-PCR and western blot system. Results: A total of 444 differential expression genes were identified, including 172 upregulated genes and 272 downregulated genes in RA synovium compared with normal controls. The top 10 hub genes PTPRC, LCK, CDC20, JUN, CDK1, KIF11, EGFR, VEGFA, MAD2L1, and STAT1 were identified from the PPI network, and the expression level of VEGFA and EGFR was significantly increased in RA membranes (p < 0.05). Conclusion: Our results indicate that the hub genes VEGFA and EGFR may have essential effects during the development of RA and can be used as potential biomarkers of RA.


Fig. 4. (A and B) The ceRNA network of top 5 up-and down-regulated circRNAs. (C and D) Top 10 enriched GO items of up-and down-regulated mRNAs. (E and F) Top 10 enriched KEGG pathway items of up-and down-regulated mRNAs.
Fig. 6. Over-expressing CDR1as inhibited the osteogenic differentiation ability while enhanced the adipogenic differentiation ability of BMSCs. (A and B) The expression of CDR1as was increased and while expression of miR-7-5p was decreased at 24th hour after CDR1as over-expressing. (C) The expression of CDR1as and WNT5B was synchronously increased within a week after CDR1as over-expressing. (D, E, and F) The expression of WNT5B was significantly increased while the expression of β-catenin was significantly decreased after a week of CDR1as over-expressing. But their expression could be reversed through co-transfection with miR-7-5p mimics. (G and H) Alizarin red staining and quantitative analysis at the 3rd, 6th, 9th and 12th day after CDR1as over-expressing showed that the osteogenic differentiation ability of BMSCs was significantly inhibited. (I and J) The expression of osteogenic marker genes RUNX2, Osterix, BMP2, ALP and OCN were significantly decreased at 7th day after CDR1as over-expressing. (K and L) Oil red O staining and quantitative analysis at the 3rd, 6th, 9th and 12th day after CDR1as over-expressing showed that the adipogenic differentiation ability of BMSCs was significantly enhanced. (M and N) The expression of adipogenic marker genes Adipsin, PPARγ, C/EBP and FABP4 were significantly increased at 7th day after CDR1as over-expressing. (n = 3, means ± SD, * p < 0.05, ** p < 0.01).
Characteristics of study subjects.
Circular RNA CDR1as promotes adipogenic and suppresses osteogenic differentiation of BMSCs in steroid-induced osteonecrosis of the femoral head

February 2020

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67 Reads

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91 Citations

Bone

Steroid-induced osteonecrosis of the femoral head (SONFH) is a common debilitating orthopedic disease. The bone marrow mesenchymal stem cells (BMSCs) are a type of mesenchymal stem cells which play crucial roles in bone repair. The adipogenic/osteogenic differentiation disorder of BMSCs has been widely perceived contributing to SONFH. However, the regulatory mechanism of BMSCs differentiation disorder still remains unclear. Circular RNA (circRNA), a kind of stable ncRNA, plays important roles in regulating gene expression via various ways. To date, there are no studies to uncover the circRNA expression profile and screen out the key circRNAs playing crucial roles in adipogenic/osteogenic differentiation disorder of SONFH-BMSCs. In present study, we detected the circRNA expression profiles in SONFH-BMSCs for the first time. A total of 820 circRNAs were differentially expressed in SONFH-BMSCs, including 460 up- and 360 down-regulated circRNAs. Bioinformatics analysis indicates circRNA CDR1as, one up-regulated circRNA, may play crucial role in adipogenic/osteogenic differentiation disorder of SONFH-BMSCs via CDR1as-miR-7-5p-WNT5B axis. Knocking-down CDR1as resulted in increasing of osteogenic differentiation and decreasing of adipogenic differentiation of BMSCs, while over-expressing CDR1as resulted in decreasing of osteogenic differentiation and increasing of adipogenic differentiation of BMSCs. The miR-7-5p binding sites of CDR1as and WNT5B were verified by luciferase reporter gene assay. Our study may provide new insights into the molecular mechanisms of osteogenic/adipogenic differentiation disorder of SONFH-BMSCs and new biomarkers for the diagnosis and treatment of SONFH.


Association of Variant Interactions in RANK , RANKL , OPG , TRAF6 , and NFATC1 Genes with the Development of Osteonecrosis of the Femoral Head

May 2019

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13 Reads

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20 Citations

DNA and cell biology

Multiple gene polymorphisms have been demonstrated to correlate with the susceptibility to osteonecrosis of the femoral head (ONFH). However, as a complex disease induced by multiple genes, the development of ONFH has rarely been reported to involve in gene interaction. In this study, we first explored the association of 10 variants interactions in receptor activator of nuclear factor-kappa B (RANK), RANK ligand (RANKL), osteoprotegerin (OPG), tumor necrosis factor receptor-associated factor 6 (TRAF6), and nuclear factor of activated T cells cytoplasmic 1 (NFATC1) genes with the development and clinical phenotypes of ONFH in a 377 ONFH case-control study with using Mass ARRAY® platform. Our results showed that not only a total of 6 interactional variants in the paired 10 variants interactions were significantly associated with the development of ONFH (OPG rs2073617 and NFATC1 rs754093, p < 0.019; OPG rs2073618 and NFATC1 rs754093, p < 0.008; OPG rs2073617 and RANKL rs1054016, p < 0.039, respectively) but also a total of 4 paired interactional variants were found to involve significantly in the increased risk of bilateral hip lesions in ONFH (OPG rs2073617 and TRAF6 rs5030411, p = 0.044; RANK rs884205 and TRAF6 rs5030411, p = 0.045, respectively). Moreover, the results from generalized multifactor dimensionality reduction also showed that the five best models were identified and associated significantly with ONFH risk, p = 0.001, 0.01, 0.01, 0.01, and 0.01, respectively. Our results first suggest that the variants in RANK/RANKL/OPG pathway genes affected the development of ONFH in gene interaction manner through the interaction of the paired variants and multiple variants.


Citations (39)


... Additionally, hfMSC-Exos containing lncRNA H19 have been implicated in inhibiting pyroptosis by reversing the activation of the NLRP3 inflammasome. This process promotes wound healing in diabetic mouse skin [59]. Collectively, these findings highlight the significance of ncRNAs in exosomes for the regulation of inflammatory responses during wound healing. ...

Reference:

Recent Progress in Mesenchymal Stem Cell-Derived Exosomes for Skin Wound Repair
Hair follicle mesenchymal stem cell exosomal lncRNA H19 inhibited NLRP3 pyroptosis to promote diabetic mouse skin wound healing

Aging

... Then, the same amount of total RNA from each sample was used to transcribe reversely with the Re-vertAidTM first strand cDNA Synthesis Kit (RR047A, Takara, Japan), according to the manufacturer's instructions. Real-time RT-PCR was performed (PE 7500, PerkinElmer, USA) with an SYBR premix ex Taq II kit (RR820A, Takara, Osaka, Japan) for expression of osteoprotegerin (OPG) and receptor activator of nuclear factor kappa-B ligand (RANKL) in MG-63 cells, and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was used as an internal control [31,50]. In addition, real-time RT-PCR was performed for expression of tartrate-resistant acid phosphatase (Trap), cathepsin K (CtsK), metalloproteinase-9 (Mmp-9), and nuclear factor of activated T-cells, cytoplasmic 1 (Nfatc-1) in RAW 264.7 cells, and Gapdh was used as an internal control [51][52][53]. ...

Identification of optimal reference genes for gene expression normalization in human osteosarcoma cell lines under proliferative conditions
Frontiers in Genetics

Frontiers in Genetics

... The glycogen content in skeletal muscle is another important factor that influences meat quality, and high glycogen content can result in low meat quality [14,16]. Considering that glucose is the basic building block of glycogen, it follows that the glucose uptake capacity of skeletal muscle determines the glycogen synthesis capacity [29,30]. Thus, it is necessary to explain the genetic mechanism in regulating the glucose uptake capacity of the skeletal muscle. ...

Bombyxin II Regulates Glucose Absorption and Glycogen Synthesis through the PI3K Signaling Pathway in HepG2 Cells
BioMed Research International

BioMed Research International

... DOG-1 is a member of the transmembrane protein 16 family, featured as a calcium-activated chloride channel and expressed in GIST, but the detailed functions are unknown. Recently, the details of DOG-1 have been revealed gradually by reported expression in poorly differentiated tumors [21,22], such as sarcomatous carcinoma of the liver, in lymph node metastasis of colorectal cancer [23], and as a poor prognostic factor in breast cancer [24]. The clinical significance of DOG-1 positivity in UESL is unclear; however, it may become more evident with the accumulation of cases. ...

Expression of TMEM16A in Colorectal Cancer and Its Correlation With Clinical and Pathological Parameters
Frontiers in Oncology

Frontiers in Oncology

... KIF11 encodes a motor protein belonging to the kinesin-like protein family, which is recognized for its involvement in diverse spindle dynamics. The role of the gene product encompasses chromosome positioning, centrosome separation, and the establishment of a bipolar spindle during cell mitosis (43). However, there is limited literature on the role of KIF11 in the RA joint microenvironment. ...

Identification of biomarkers associated with synovitis in rheumatoid arthritis by bioinformatics analyses

Bioscience Reports

... Promotes osteogenesis by activating Sirt1 and Wnt/β-catenin pathway [66] CircRNAs also play roles in maintaining bone homeostasis by regulating bone metabolism and the remodeling processes. For example, circRNA_ circ_0006859 was found to inhibit osteogenesis and promote adipogenesis in human in human bone marrow mesenchymal stem cells by targeting the signaling miR-431-5p/Rho-associated protein kinase 1 (ROCK1) [67] and circRNA-CDR1 promotes adipogenesis and inhibits osteogenic differentiation in osteonecrosis of the femoral head [68]. ...

Circular RNA CDR1as promotes adipogenic and suppresses osteogenic differentiation of BMSCs in steroid-induced osteonecrosis of the femoral head

Bone

... Взаимодействие мембранного рецептора активатора ядерного фактора каппа β (RANK) с его лигандом (RANKL) приводит к транслокации ядерного фактора каппа β (NFkβ) в клеточное ядро и активации внутриклеточных путей, в результате чего индуцируется дифференцировка прогениторных клеток в зрелый остеокласт с последующей активацией. Некоторые научно-исследовательские работы указывают на одну из ведущих ролей усиления остеокластогенеза в развитие костнодеструктивных процессов при аваскулярном некрозе [11,12]. ...

Association of Variant Interactions in RANK , RANKL , OPG , TRAF6 , and NFATC1 Genes with the Development of Osteonecrosis of the Femoral Head
  • Citing Article
  • May 2019

DNA and cell biology

... While miR-107 appears to suppress angiogenesis by inhibiting the development of new blood vessels [65]. In another bioinformatic study, it has been reported that miR-21, upon expression in ES cells, works as a tumour suppressor by targeting and downregulating the expression of Activated Leucocyte Cell Adhesion Molecule (ALCAM) [66]. Whereas the downregulation of miR-199b-5p has been reported in ES cell lines in comparison with human MSCs (Table 1) [67]. ...

Integrated bioinformatics analysis of miRNA expression in Ewing sarcoma and potential regulatory effects of miR-21 via targeting ALCAM/CD166

... Cartilage tissue in OA may be the first to undergo pathophysiological changes, including cartilage matrix proteolysis, cartilage cell erosion, and fibrosis, while the release of collagen fragments and proteoglycans into synovial fluid leads to synovial tissue inflammation (14). Data from current bioinformatics studies on OA are mostly from synovial tissue (15,16) and peripheral blood (11), and some scholars believe that although inflammatory response as a major mechanism may be involved in the pathogenesis of OA (17), local or systemic reactions are affected by other factors. ...

Network Analyses of Differentially Expressed Genes in Osteoarthritis to Identify Hub Genes
BioMed Research International

BioMed Research International

... Additionally, CRC is one of the main causes of cancer-related deaths worldwide. miRNAs are small non-coding RNA sequences with high specificity and sensitivity [2] that can target genes encoding transcription factors and regulate various biological processes, such as cell proliferation, cell cycle, apoptosis, and differentiation [3]. The expression pattern and function of specific miRNAs in the plasma and tissues of patients with CRC are closely related to the development of the disease [4]. ...

MicroRNA-related transcription factor regulatory networks in human colorectal cancer

Medicine