Yasuhiro Tomitaka's research while affiliated with All-Russian Institute for Plant Protection (VIZR) and other places

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Publications (59)


Control of Bemisia tabaci using the predator Nesidiocoris tenuis in the spring part of winter–spring tomato cultivationタバコカスミカメ利用による冬春トマトの栽培終期におけるタバココナジラミ密度抑制効果の検証
  • Article

June 2024

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3 Reads

Annual Report of The Kansai Plant Protection Society

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Toshio Kitamura

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Shuhei Adachi-Fukunaga

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[...]

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Nobuo Mizutani

The use of Nesidiocoris tenuis (Reuter) (Hemiptera: Miridae) for control of Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae) in the late period of winter–spring greenhouse tomato cultivation was evaluated in a demonstration test in Kumamoto Prefecture, Japan, from 2020 to 2021. Two adjacent greenhouses were used as a control plot and an N. tenuis-introduced plot. Insect-proof nets of 0.3–0.4 mm mesh were used for roof valleys and side walls of the N. tenuis-introduced plot, and 0.8–1.0 mm mesh were used for the control plot. Given the high risk of whitefly invasion in the immediate postplanting period, nonselective insecticides and repellents were used to control whiteflies in both plots initially, then N. tenuis and banker plants were introduced to the N. tenuis-introduced plot. The noncrop plants Cleome hassleriana (Chodat) (Brassicales: Capparaceae) and Verbena × hybrida hort. ex Groenl. & Rumpler (Lamiales: Verbenaceae) were planted as banker plants. N. tenuis introduction tended to suppress the increase in B. tabaci population in spring, the end of the cropping season, and had an indirect positive effect on the suppression of whitefly-transmitted viral diseases to the same or less level than the control. These results indicated that N. tenuis and banker plants, combined with insect-proof net of 0.3–0.4 mm mesh are effective control tools against B. tabaci even in the region which is at high risk for whitefly-transmitted viral diseases.

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Field Survey to Identify Mosaic Disease Viruses of Cucurbita maxima in Okinawa Prefecture, Japan

April 2024

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3 Reads

Japan Agricultural Research Quarterly JARQ

Squash (Cucurbita maxima) is an essential crop cultivated throughout Japan, and viral diseases such as mosaic disease cause a tremendous loss of squash yield in this region. Although surveying and detection of infectious viruses are essential for controlling viral diseases, currently, no in-depth field surveys have yet been conducted. Here, we conducted a field survey in virus-infected squash fields in Okinawa Prefecture, Japan. A total of 138 samples, including 131 from squash and 7 from weeds, were collected from Ishigaki Island, Miyako Island, and Okinawa Main Island. Nine identified viruses were then investigated by reverse transcription-polymerase chain reaction (RT-PCR). Most samples were found to be infected with zucchini yellow mosaic virus (ZYMV), and a few were infected with papaya ringspot virus (PRSV) or both ZYMV and PRSV. No other cucurbit-infecting viruses were detected among the samples. In addition, ZYMV and PRSV were detected in cucurbitaceous weeds grown near squash fields, suggesting that these weeds may act as an infection source for these viruses. Discipline: Agricultural Environment


Comparison of symptoms observed in untreated and attenuated strain-inoculated cucumber plants during a field experiment. Panels (A,B) show the symptoms of untreated and ZYMV-2002-inoculated plants, respectively. Untreated plants exhibited mosaic and stunting symptoms, while inoculated plants remained asymptomatic. Panels (C,D) depict symptoms of untreated and CMV- and WMV-attenuated isolate-inoculated cucumbers, respectively. Here, uninoculated plants exhibited mosaic, wilting, and yellowing symptoms, whereas inoculated plants exhibited mild symptoms.
Symptoms of untreated and L3-163 attenuated isolate-inoculated green pepper plants. The virulent strain of pepper mild mottle virus was inoculated via pruning shears. Untreated plants exhibited mosaic and stunting symptoms (left), while plants inoculated with the isolate remained asymptomatic (right).
Quality comparison of uninoculated and inoculated Chinese lantern plants. The quality divided into four categories: excellent, very good, good, A/B (average), unmarketable. The unmarketable category was not shown for this experiment. Data modified from Yoneda et al. [42].
Symptoms of cucumber plants inoculated with melon yellow spot virus (MYSV). The left panel shows a cucumber plant inoculated with an attenuated isolate of MYSV (SA08-8), whereas the right panel shows a plant inoculated with a MYSV-virulent isolate (C05T). Both pictures were taken 20 days-post-inoculation.
Large-scale inoculation of an attenuated strain using a seedling fixator, a spray gun, and an air compressor. Chinese lantern plants are cultivated using a plug tray (top left), and a tray in which seedlings are planted is connected to a seedling fixator (bottom left). The cotyledon leaves are supported from below by a comb-shaped structure. Next, a net is placed over the seedlings, and an inoculum is sprayed on them using a spray gun and air compressor (right).
Development and Application of Attenuated Plant Viruses as Biological Control Agents in Japan
  • Literature Review
  • Full-text available

March 2024

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49 Reads

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2 Citations

Viruses

Viruses

In 1929, it was reported that yellowing symptoms caused by a tobacco mosaic virus (TMV) yellow mosaic isolate were suppressed in tobacco plants that were systemically infected with a TMV light green isolate. Similar to vaccination, the phenomenon of cross-protection involves a whole plant being infected with an attenuated virus and involves the same or a closely related virus species. Therefore, attenuated viruses function as biological control agents. In Japan, many studies have been performed on cross-protection. For example, the tomato mosaic virus (ToMV)-L11A strain is an attenuated isolate developed by researchers and shows high control efficiency against wild-type ToMV in commercial tomato crops. Recently, an attenuated isolate of zucchini yellow mosaic virus (ZYMV)-2002 was developed and registered as a biological pesticide to control cucumber mosaic disease. In addition, attenuated isolates of pepper mild mottle virus (PMMoV), cucumber mosaic virus (CMV), tobacco mild green mosaic virus (TMGMV), melon yellow spot virus (MYSV), and watermelon mosaic virus (WMV) have been developed in Japan. These attenuated viruses, sometimes called plant vaccines, can be used not only as single vaccines but also as multiple vaccines. In this review, we provide an overview of studies on attenuated plant viruses developed in Japan. We also discuss the application of the attenuated strains, including the production of vaccinated seedlings.

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Elucidating the nature of seed-borne transmission of tomato brown rugose fruit virus in tomato, bell pepper, and eggplant

December 2023

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67 Reads

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2 Citations

Journal of General Plant Pathology

Since the first report of the tobamovirus tomato brown rugose fruit virus (ToBRFV) in 2014, it has become globally distributed. Its rapid spread has been primarily attributed to seed-borne transmission. Here, the seed-borne nature of ToBRFV transmission was investigated in different cultivars of tomato, bell pepper, and eggplant. In situ hybridization to localize the virus in reproductive organs of ToBRFV-infected tomato plants revealed that the virus was not present in shoot apices, flower buds, or in ovules during flower opening, indicating the virus may be restricted to the outer integument and transported in the vascular bundles during seed development. However, during early fruit development, the virus was present in the integuments in the ovule. Seeds of tomato cultivars with or without tobamovirus resistance gene Tm-22 transmitted the virus to the progeny seedlings at rates that reflected the ineffectiveness of the gene against ToBRFV. Seeds of bell peppers transmitted ToBRFV at higher rates than tomato seeds, but a bell pepper cultivar that has resistance gene L3 was not systemically infected, and its seeds did not harbor the virus. Three eggplant cultivars were systemically infected with ToBRFV but without showing any obvious symptoms, and even though ToBRFV was present in their seeds, the seedlings were not infected. ToBRFV was detected in the seed coats of contaminated tomato and bell pepper seeds, but not in eggplant seed coats. These results indicate mechanistic differences in seed-borne transmission among the three Solanaceae crops.


Evaluation of control measures against tomato brown rugose fruit virus: Disinfestation of equipment and seeds and use of attenuated strain of tomato mosaic virusTomato brown rugose fruit virusに対する器具および種子の消毒ならびに弱毒ウイルスを用いた防除効果の検証

November 2023

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15 Reads

Japanese Journal of Phytopathology

Tomato brown rugose fruit virus (ToBRFV, a tobamovirus) causes mosaic and severe fruit symptoms on tomatoes and solanaceous crops. Since its discovery in the Middle East a decade ago, ToBRFV has been found in nearly 40 countries. Although it has not yet been reported in Japan, control measures are urgently needed to prepare against ToBRFV. In this study, we tested disinfestation procedures that are already used against tobamoviruses in Japan for their efficacy against ToBRFV: (i) chemical disinfestation of equipment (scissors), (ii) chemicals and dry heat disinfestation of ToBRFV-contaminated tomato seeds, and (iii) inoculation of tomato seedlings with an attenuated strain of tomato mosaic virus (ToMV) to inhibit infection and symptom development. The control measures generally used against tobamoviruses were also effective against ToBRFV on tools and seeds, but the measures differed in efficacy and advantages. The attenuated ToMV was ineffective. Precautions for using these treatments and possible solutions or improvements are discussed.


Host range and pathogenicity of tomato brown rugose fruit virusTomato brown rugose fruit virusの宿主範囲および病原性

November 2023

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27 Reads

Japanese Journal of Phytopathology

The tobamovirus tomato brown rugose fruit virus (ToBRFV) causes leaf mosaic and severe fruit symptoms such as browning and distortion (rugosity) on solanaceous crops. Since the first report of ToBRFV in Israel in 2014, it has been found in nearly 40 countries. To obtain further insights on its host range and pathogenicity, detection and preventing its invasion into Japan, we inoculated varieties of solanaceous crops and weeds in a glasshouse with the Israeli ToBRFV isolate and evaluated local and systemic symptoms and infection of the non-inoculated upper leaves. All the tomato varieties tested except for GCR237, homozygous for tobamovirus resistance gene Tm-1, were infected systemically and had mosaic symptoms on leaves. However, rugosity on fruits was very rarely observed on any varieties in our experimental conditions. Bell pepper varieties harboring L¹, L², L³, and L⁴ were resistant or immune to systemic infection. Two Japanese eggplant varieties were systemically infected, but they developed only temporary faint, chlorotic spots and wavy leaves. Most of the other solanaceous crops and weeds tested were also systemically infected by ToBRFV, including newly identified hosts Solanum sisysmbriifolium, S. muricatum, S. ptycunthum, S. nigrescens, and Nicandra physalodes. These results indicate that ToBRFV has a considerably wide host range especially in the Solanaceae.


ICTV Virus Taxonomy Profile: Phenuiviridae 2023: This article is part of the ICTV Virus Taxonomy Profiles collection.

September 2023

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159 Reads

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6 Citations

Journal of General Virology

The family Phenuiviridae comprises viruses with 2–8 segments of negative-sense or ambisense RNA, comprising 8.1–25.1 kb in total. Virions are typically enveloped with spherical or pleomorphic morphology but can also be non-enveloped filaments. Phenuivirids infect animals including livestock and humans, birds, plants or fungi, as well as arthropods that serve as single hosts or act as biological vectors for transmission to animals or plants. Phenuivirids include important pathogens of humans, livestock, seafood and agricultural crops. This is a summary of the International Committee on Taxonomy of Viruses (ICTV) Report on the family Phenuiviridae , which is available at ictv.global/report/phenuiviridae .


ICTV-accepted taxonomy of the order Muvirales (Negarnaviricota: Haploviricotina: Chunqiuviricetes) as of April 2023
ICTV-accepted taxonomy of the order Serpentovirales (Negarnaviricota: Haploviricotina: Milneviricetes) as of April 2023
ICTV-accepted taxonomy of the order Jingchuvirales (Negarnaviricota: Haploviricotina: Monjiviricetes) as of April 2023
ICTV-accepted taxonomy of the order Mononegavirales (Negarnaviricota: Haploviricotina: Monjiviricetes) as of April 2023
Annual (2023) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota)

August 2023

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792 Reads

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21 Citations

Journal of General Virology

In April 2023, following the annual International Committee on Taxonomy of Viruses (ICTV) ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and emended. The phylum was expanded by one new family, 14 new genera, and 140 new species. Two genera and 538 species were renamed. One species was moved, and four were abolished. This article presents the updated taxonomy of Negarnaviricota as now accepted by the ICTV.


Development of a multiplex RT-PCR method to detect six orthotospovirus species reported in Japan国内の6種オルソトスポウイルスを検出するマルチプレックスRT-PCR法の開発

August 2023

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5 Reads

Japanese Journal of Phytopathology

We improved an established one-step multiplex RT-PCR method to detect six orthotospoviruses that infect Solanaceae plants (tomato spotted wilt virus [TSWV], newly reported tomato zonate spot virus [TZSV], impatiens necrotic spot virus [INSV], chrysanthemum stem necrosis virus [CSNV], watermelon silver mottle virus [WSMoV], capsicum chlorosis virus [CaCV]). Specific primer sets for one-step multiplex RT-PCR were designed for TSWV, TZSV, INSV, CSNV, WSMoV, and CaCV, and this optimized RT-PCR amplified DNA fragments corresponding to the target virus species: TSWV (831 bp), TZSV (734 bp), INSV (592 bp), CSNV (502 bp), WSMoV (395 bp), CaCV (324 bp). All combinations of orthotospoviruses were detected in mixed samples. The method was applied to Solanaceae plants infected with orthotospoviruses under field conditions.


First report of tomato zonate spot virus on green pepper in Japan

July 2023

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3 Reads

Journal of General Plant Pathology

In 2021 in Kanagawa Prefecture, Japan, green pepper (Capsicum annuum L.) developed necrotic spots on leaves and necrosis of stems. The nucleotide sequence of the N gene of the virus, isolated through two-rounds of single-lesion isolation, shared 95% identity with that of tomato zonate spot virus (TZSV) reported in China. When green pepper plants were inoculated with the isolated virus, the original symptoms were reproduced, and RT-PCR confirmed the presence of the virus in the inoculated plants. This is the first report of TZSV in Japan.


Citations (33)


... Despite improvements in inoculation techniques [80], infecting plants with protective strains is time-and labor-intensive. Additionally, within certain jurisdictions such as the European Union (EU), regulatory frameworks for approvals of cross-protection agents have become tighter since the heyday of cross-protection in the 1970s, and for a quarantine agent such as ToBRFV, the release of even a mild variant is illegal [76]. ...

Reference:

Engineered Resistance to Tobamoviruses
Development and Application of Attenuated Plant Viruses as Biological Control Agents in Japan
Viruses

Viruses

... These two enzymes can have antiviral effects in plants in the form of transcriptional and posttranscriptional gene silencing by a combination of viral small interfering RNAs (vsiRNA) and protein aggregations called RNA-induced silencing complex (RISC) (Wang et al., 2010;Guo et al., 2019;Bradamante et al., 2021). Perhaps one of the most recent studies showing how a single gene can change the fate of resistance to seed transmission was published by Matsushita et al. (2024). In their study, they tested several cultivars of three Solanaceous crops (tomato, bell pepper, and eggplant) with two resistant genes to tomato brown rugose fruit virus (ToBRFV), Tm-2 2 and L 3 . ...

Elucidating the nature of seed-borne transmission of tomato brown rugose fruit virus in tomato, bell pepper, and eggplant
  • Citing Article
  • December 2023

Journal of General Plant Pathology

... These two viruses were also prominent in apple pollen samples from our previous study, which could suggest a previously unreported association with pollen [5]. Coguviruses can be graft-transmissible, and CCGaV was recently reported to be seedborne [70,71]. ...

ICTV Virus Taxonomy Profile: Phenuiviridae 2023: This article is part of the ICTV Virus Taxonomy Profiles collection.

Journal of General Virology

... In agreement with the current recommendations of the International Committee on the Taxonomy of Viruses (ICTVs) [2,6], the genus Betanucleorhabdovirus currently com-prises 18 members described based on the primary observation of the symptoms of infection and on viral genome sequencing and, more recently, on the increasing availability of high-throughput sequencing, as latent infections of plants and from plant transcriptome data. Currently accepted Betanucleorhabdovirus species include Betanucleorhabdovirus asclepiadis (represented by Asclepias syriaca virus 2, AscSyV2), B. bacopae (Bacopa monnieri virus 2, BmV2) [7], B. cardamomi (cardamom vein clearing virus, CdCV) [8], B. cnidii (Cnidium virus 1, CnV1) [5], B. daturae (Datura yellow vein virus, DYVV) [9], B. loti (bird's-foot trefoil-associated virus, BFTV) [10], B. mali (apple rootstock virus A, ApRVA) [11], B. medicagonis (alfalfa-associated nucleorhabdovirus, AaNV) [12], B. plectranthi (Plectranthus aromaticus virus 1, PleArV1) [13], B. retesonchi (Sonchus yellow net virus, SYNV) [14], B. rhododendri (Rhododendron delavayi virus 1, RhoDeV1) [1], B. ribes (blackcurrant-associated rhabdovirus, BCaRV) [15], B. venasonchi (sowthistle yellow vein virus, SYVV) [16], B. zanthoxyli (Zhuye pepper nucleorhabdovirus, ZPNRV) [17]. ...

Annual (2023) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota)

Journal of General Virology

... SFTS is caused by SFTS virus (SFTSV), a member of the genus Bandavirus in the Phenuiviridae family [1,8]. The main route of SFTSV transmission is tick bites, with some cases transmitted by exposure to bodily fluids from infected individuals [9,10]. ...

2022 taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

Archives of Virology

... Most strains from the world-B group were isolated from brassicas and can infect brassica crops, while the basal-BR group was found primarily in radish hosts, but is also able to infect brassicas (Gong et al., 2019). present world population of TuMV is evolving and diverging rapidly (Gibbs et al., 2015;Kawakubo et al., 2022). The average nucleotide evolutionary rate of TuMV is around 10 -3 substitutions per site per year (Nguyen et al., 2013). ...

The Recombinogenic History of Turnip Mosaic Potyvirus Reveals its Introduction to Japan in the 19th Century

Virus Evolution

... Thus, we conclude that the primer sets designed for BPYV and KGMMV were useful for the detection of both viruses. Multiplex RT-PCR methods can detect several plant viruses quickly, reliably, and cheaply because these methods detect multiple virus species simultaneously (Pallás et al. 2018, Tanaka et al. 2022. Several studies have reported using multiplex RT-PCR to detect cucurbit-infecting viruses (Okuda et al. 2007, Kwon et al. 2014). ...

A multiplex RT-PCR assay combined with co-extraction of DNA and RNA for simultaneous detection of TYLCV and ToCV in whitefly
  • Citing Article
  • December 2021

Journal of Virological Methods

... Bunyaviruses are a diverse group of pathogens that cause diseases in plants and animals (22,23). Now, the order Bunyavirales has expanded to comprise 14 families and 60 genera based on the recent International Committee on Taxonomy of Viruses (ICTV) release (24,25). In contrast to nonsegmented negative-sense RNA viruses, bunyavirus diversity in fungi has been rarely explored, until recently with rapidly increasing viromic studies. ...

Correction to: 2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

Archives of Virology

... Following the identification of DBV, several other novel viruses that are genetically related to DBV were successively discovered around the world (66-69). These viruses have been classified into the new Bandavirus genus according to the latest report by International Committee on Taxonomy of Viruses (ICTV) and posed an increasing threat to the global public health (49,69). Particularly, Heartland virus that was first isolated from two Missouri patients and subsequently found to be widespread within the central and eastern United States can cause severe clinical manifestations and even deaths similar to SFTS (70). ...

Kuhn et al 2021 Taxonomic update of phylum Negarnaviricota (Ribovira Orthornavirae), inluding the large orders Bunyavirales and Mononegavirales

... GRSPaV; EnVS-1; EnVS-2; EnVS-3; EnPV-3; P. gammaplasmoparae 1 Virus detected using BLASTN against the RefSeq database: grapevine leafroll-associated virus 1 (GLRaV-1); grapevine leafroll-associated virus 2 (GLRaV-2); grapevine rupestris stem pitting-associated virus (GRSPaV); grapevine fleck virus (GFkV); grapevine rupestris vein feathering virus (GRVFV); grapevine virus A (GVA); Erysiphe necator mitovirus 1 (EnVS-1); Erysiphe necator mitovirus Among all assembled contigs, the bioinformatic analysis revealed the presence in both samples, Pin1 and IVIA 49.3, of one contig of 6155 nt (deposited in GenBank in July 2022, accession number OP042368, hereafter referred to as RNA2), which showed 99.8% nucleotide identity with the genomic RNA of the recently described Erysiphe necator associated negative-stranded RNA virus 2 (NC_077044) and 99.82% nt identity with that of Plasmopara-viticola-lesion-associated mononegaambi virus 3 (NC_076453), indicating these two names to be synonymous. Indeed, this synonymy has been recognized, and following the transition to viral binomial nomenclature, the corresponding virus species has recently been named Penicillimonavirus gammaplasmoparae and included in the new genus Penicillimonavirus in the family Mymonaviridae [22]. Efforts to extend the recovered contig were unsuccessful, consistent with the genome length reported for the other two isolates of, respectively 6178 and 6153 nt. ...

2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

Archives of Virology