Wenjin Zhao's research while affiliated with Jilin University and other places

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Publications (30)


Construction of an antidepressant priority list based on functional, environmental, and health risks using an interpretable mixup-transformer deep learning model
  • Article

May 2024

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6 Reads

Journal of Hazardous Materials

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Yuanyuan Zhao

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Wenjin Zhao
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Structures of free radicals and the thyroid hormone receptor: a ROO·, b HO·, c O2⁻, d O3, e thyroid hormone receptor
Molecular structure of TMQ and its hydroxyl derivatives
Reaction pathway for TMQ molecule and peroxyl radical
Reaction pathway of TMQ molecule and hydroxyl radical
Reaction pathway of TMQ molecule and superoxide anion radical

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Screening eco-friendliness tire antioxidants alternatives: functional 2,2,4-trimethyl-1,2-dihydroquinoline derivatives design and toxicity evaluation
  • Article
  • Publisher preview available

July 2023

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168 Reads

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2 Citations

Environmental Science and Pollution Research

Antioxidants which are indispensable functional additives used in rubber tires, are released into aquatic habitats from tire wear particles (TWP), collected in water bodies, and threaten the aquatic ecosystem. This study aimed to design eco-friendly derivatives of 2,2,4-trimethyl-1,2-dihydroquinoline (TMQ) with increased antioxidant activity to use as tire antioxidants. Initially, seventy highly efficient derivatives of TMQ were designed by hydroxylation modifications at multiple sites. The antioxidant activity of hydroxyl derivatives was characterized based on DFT method and compared with TMQ. Twenty derivatives showing a significant (greater than 9%) increase in antioxidant activity compared to TMQ were selected for the next stage. The toxicity risk of these twenty TMQ derivatives was assessed using various toxicokinetic methods. Finally, six TMQ derivatives with significantly lower toxicity risk compared to that of TMQ were evaluated for potential developmental toxicity. They were characterized using molecular docking and molecular dynamics techniques to assess the developmental toxicity risk in silver salmon by absorption of their ROO·, HO·, O2·– and O3 derivatives. TMQ-6 and TMQ-48 showed the lowest toxicity among all TMQ derivatives by a rather large margin. The study throws light on the path of future endeavors to develop highly efficient and greener tire antioxidants.

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Potential thyroid hormone disorder risks of tire antioxidants to aquatic food chain organisms after absorbing free radicals in marine and freshwater environments

May 2023

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18 Reads

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3 Citations

Aquatic Toxicology

Tire antioxidants are essential functional chemical additives in tire rubber production. Because of the characteristic easy precipitation in the water environment, the environmental pollution problem caused by tire antioxidants is concerning. To reveal the mechanism by which tire antioxidants reduce common oxidative factors (free radicals) in the environment and to control the potential biological thyroid hormone disorder risk of tire antioxidant derivatives, eight commonly used antioxidants in tire production were selected for analysis. Firstly, the ability of tire antioxidants to reduce three different free radicals was quantitatively characterized based on Gaussian calculation method and inferring the radical reduction mechanism of tire antioxidants. Moreover, using the PaDEL-Descriptor software and random forest algorithm found that the N-octanol/water partition coefficient, a structure descriptor of tire antioxidant molecules, significantly correlated with their reducing ability. Second, molecular docking and molecular dynamics methods were used to assess the thyroid hormone disorder risk to aquatic organisms of eight antioxidants after reducing three free radicals. And this is the first study to construct an assessment score list of potential thyroid hormone disorder risk of the derivatives of tire antioxidants after reducing free radicals to marine and freshwater aquatic organisms based on the risk entropy method. Through the screening of this list, it was found that the derivative of the antioxidant 2,2,4-trimethyl-1,2-dihydroquinoline oxidized by free radicals had the highest risk of thyroid hormone disorder. In addition, the top organism in the aquatic food chain was the most affected. This study also revealed that van der Waals interactions and hydrogen bonding were the main influencing factors of thyroid hormone disorder risk to aquatic organisms of the derivatives of tire antioxidants that reduce free radicals based on amino acid residue analysis. Overall, the results provide theoretical support for the selection of antioxidants and the avoidance and control of environmental risks in the tire rubber production process.


A multi-framework for bisphenols based on their high performance and environmental friendliness: Design, screening, and recommendations

May 2023

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2 Reads

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3 Citations

Journal of Hazardous Materials

Bisphenols (BPs) have gained significant attention due to their extensive use in the production of medical equipment, packaging materials, and everyday commodities. Urgent attention is required for assessing and identifying the risks associated with BP exposure to the environment and human health, as well as developing regulatory strategies. In this paper, 29 common BPs were selected as the research object, high-performance BP substitutes with environmental and human health friendliness characteristics were designed and screened. The above eight BP substitutes were considered as examples, and the first-level evaluation indicators of BPs and their substitutes were predicted using a random forest classification/regression model. Subsequently, the key indicators affecting the first-level evaluation indicators were ranked. The ranking results were environmental friendliness (64.30%) > human health risk (18.00%) > functionality (17.69%), indicating that environmental friendliness was the main influencing factor for the first-level evaluation indicators of BPs and their substitutes. Therefore, the study employed density functional theory (DFT) to simulate the biodegradation pathways of BPs and their substitutes in contaminated soil and landfill leachate, using Derivative-50 as an example. Furthermore, the environmental risk associated with the degradation products was evaluated, and regulatory recommendations based on risk identification were proposed.


Exploring the Potential Hormonal Effects of Tire Polymers (TPs) on Different Species Based on a Theoretical Computational Approach

March 2023

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67 Reads

Polymers

Tire polymers (TPs) are the most prevalent type of microplastics and are of great concern due to their potential environmental risks. This study aims to determine the toxicity of TPs with the help of molecular-dynamics simulations of their interactions with receptors and to highlight the differences in the toxicity characteristics of TPs in different environmental media (marine environment, freshwater environment, soil environment). For this purpose, five TPs—natural rubber, styrene–butadiene rubber (SBR), butadiene rubber, nitrile–butadiene rubber, and isobutylene–isoprene rubber—were analyzed. Molecular-dynamics calculations were conducted on their binding energies to neurotoxic, developmental, and reproductive receptors of various organisms to characterize the toxic effects of the five TPs. The organisms included freshwater species (freshwater nematodes, snails, shrimp, and freshwater fish), marine species (marine nematodes, mussels, crab, and marine fish), and soil species (soil nematodes, springtails, earthworms, and spiders). A multilevel empowerment method was used to determine the bio-toxicity of the TPs in various environmental media. A coupled-normalization method–principal-component analysis–factor-analysis weighting method—was used to calculate the weights of the TP toxicity (first level) categories. The results revealed that the TPs were the most biologically neurotoxic to three environmental media (20.79% and 10.57% higher compared with developmental and reproductive toxicity, respectively). Regarding the effects of TPs on organisms in various environmental media (second level), using a subjective empowerment approach, a gradual increase in toxicity was observed with increasing trophic levels due to the enrichment of TPs and the feeding behavior of organisms. TPs had the greatest influence in the freshwater-environment organisms according to the subjective empowerment approach employed to weight the three environmental media (third level). Therefore, using the minimum-value method coupled with the feature-aggregation method, the interval-deflation method coupled with the entropy-weighting method, and the standard-deviation normalization method, the three toxicity characteristics of SBR in three environmental media and four organisms were determined. SBR was found to have the greatest impact on the overall toxicity of the freshwater environment (12.38% and 9.33% higher than the marine and soil environments, respectively). The greatest contribution to neurotoxicity (26.01% and 15.95% higher than developmental and reproductive toxicity, respectively) and the greatest impact on snails and shrimp among organisms in the freshwater environment were observed. The causes of the heterogeneity of SBR’s toxicity were elucidated using amino-acid-residue analysis. SBR primarily interacted with toxic receptors through van der Waals, hydrophobic, π-π, and π-sigma interactions, and the more stable the binding, the more toxic the effect. The toxicity characteristics of TMPs to various organisms in different environments identified in this paper provide a theoretical basis for subsequent studies on the prevention and control of TMPs in the environment.


Application of a developed triple-classification machine learning model for carcinogenic prediction of hazardous organic chemicals to the US, EU, and WHO based on Chinese database

March 2023

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32 Reads

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4 Citations

Ecotoxicology and Environmental Safety

Cancer, the second largest human disease, has become a major public health problem. The prediction of chemicals' carcinogenicity before their synthesis is crucial. In this paper, seven machine learning algorithms (i.e., Random Forest (RF), Logistic Regression (LR), Support Vector Machines (SVM), Complement Naive Bayes (CNB), K-Nearest Neighbor (KNN), XGBoost, and Multilayer Perceptron (MLP)) were used to construct the carcinogenicity triple classification prediction (TCP) model (i.e., 1A, 1B, Category 2). A total of 1444 descriptors of 118 hazardous organic chemicals were calculated by Discovery Studio 2020, Sybyl X-2.0 and PaDEL-Descriptor software. The constructed carcinogenicity TCP model was evaluated through five model evaluation indicators (i.e., Accuracy, Precision, Recall, F1 Score and AUC). The model evaluation results show that Accuracy, Precision, Recall, F1 Score and AUC evaluation indicators meet requirements (greater than 0.6). The accuracy of RF, LR, XGBoost, and MLP models for predicting carcinogenicity of Category 2 is 91.67%, 79.17%, 100%, and 100%, respectively. In addition, the constructed machine learning model in this study has potential for error correction. Taking XGBoost model as an example, the predicted carcinogenicity level of 1,2,3-Trichloropropane (96-18-4) is Category 2, but the actual carcinogenicity level is 1B. But the difference between Category 2 and 1B is only 0.004, indicating that the XGBoost is one optimum model of the seven constructed machine learning models. Besides, results showed that functional groups like chlorine and benzene ring might influence the prediction of carcinogenic classification. Therefore, considering functional group characteristics of chemicals before constructing the carcinogenicity prediction model of organic chemicals is recommended. The predicted carcinogenicity of the organic chemicals using the optimum machine leaning model (i.e., XGBoost) was also evaluated and verified by the toxicokinetics. The RF and XGBoost TCP models constructed in this paper can be used for carcinogenicity detection before synthesizing new organic substances. It also provides technical support for the subsequent management of organic chemicals.


Figure 2. Response and effect values for the 8 external conditions schemes (3-factors/2-levels).
Figure 3. Simulation of microbial degradation pathways of ATZ and substitute D-5.
CoMSIA model evaluation parameters for the herbicidal functionality properties, degrad- ability, and toxicity of S-THs and their comprehensive effects.
Triazine Herbicides Risk Management Strategies on Environmental and Human Health Aspects Using In-Silico Methods

March 2023

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16 Reads

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5 Citations

International Journal of Molecular Sciences

As an effective herbicide, 1, 3, 5-Triazine herbicides (S-THs) are used widely in the pesticide market. However, due to their chemical properties, S-THs severely threaten the environment and human health (e.g., human lung cytotoxicity). In this study, molecular docking, Analytic Hierarchy Process—Technique for Order Preference by Similarity to the Ideal Solution (AHP-TOPSIS), and a three-dimensional quantitative structure-active relationship (3D-QSAR) model were used to design S-TH substitutes with high herbicidal functionality, high microbial degradability, and low human lung cytotoxicity. We discovered a substitute, Derivative-5, with excellent overall performance. Furthermore, Taguchi orthogonal experiments, full factorial design of experiments, and the molecular dynamics method were used to identify three chemicals (namely, the coexistence of aspartic acid, alanine, and glycine) that could promote the degradation of S-THs in maize cropping fields. Finally, density functional theory (DFT), Estimation Programs Interface (EPI), pharmacokinetic, and toxicokinetic methods were used to further verify the high microbial degradability, favorable aquatic environment, and human health friendliness of Derivative 5. This study provided a new direction for further optimizations of novel pesticide chemicals.


Citations (16)


... Further analysis was conducted on the composition of bacterial communities at the genus level ( Figure S6). The natural PAH-degrading bacteria in soil mainly belonged to Pseudomonas, Bacillus, Sphingomonas, Lysobacter, Rhizobium, and Ohtaekwangia [44][45][46][47][48]. In Shanghai soil ( Figure S6a), the abundance of Pseudomonas increased in the SH_P1 group (32.4%) and subsequently decreased to 3.6% and 6.4% in the SH-P2 and SH-P3 groups, respectively, with that of SH_BK group being 5.1%. ...

Reference:

Transformation and Degradation of PAH Mixture in Contaminated Sites: Clarifying Their Interactions with Native Soil Organisms
Reduction strategies of polycyclic aromatic hydrocarbons in farmland soils: Microbial degradation, plant transport inhibition, and their mechanistic analysis
  • Citing Article
  • December 2023

Journal of Hazardous Materials

... Common antioxidants currently on the market include 6PPD, BHT, and poly (1, 2-dihydro-2,2,4-trimethyl-quinoline) (TMQ) (Tian et al. 2021;Xu et al. 2021;Esteves et al. 2001). Wang et al. studied the potential toxicity risks of several commonly used tire antioxidants in aquatic organisms and found that the tire antioxidant TMQ had a high risk of toxicity (Wang et al. 2023). Therefore, studying the new-type tire antioxidant TMQ molecules has certain practical significance. ...

Potential thyroid hormone disorder risks of tire antioxidants to aquatic food chain organisms after absorbing free radicals in marine and freshwater environments
  • Citing Article
  • May 2023

Aquatic Toxicology

... By leveraging random forest and k-nearest neighbor algorithms, these studies demonstrated high accuracy in classifying compounds, offering valuable tools for large-scale chemical screening in drug development safety assessments. Moreover, Hao et al. [46] employed seven ML algorithms to construct a Carcinogenicity Triple Classification Prediction (TCP) model. Integrating descriptors for 118 hazardous organic chemicals, the model met evaluation requirements, emphasizing the potential of ML models for error correction and offering insights into the impact of functional groups on carcinogenicity prediction. ...

Application of a developed triple-classification machine learning model for carcinogenic prediction of hazardous organic chemicals to the US, EU, and WHO based on Chinese database
  • Citing Article
  • March 2023

Ecotoxicology and Environmental Safety

... As far as 1,3,5-triazine derivatives reported in this work are concerned, it should be mentioned that this class of compounds are highly employed at industrial level for many different applications as for examples dyes (Benkhaya et al., 2020;Gao et al., 2023;Hoveizavi and Feiz, 2023;Patel et al., 2023), pesticides (Joo et al., 2010;Manousi et al., 2021;Velasco et al., 2021;Yao et al., 2023;Yu et al., 2021a), anti-cancer (Singh et al., 2021;Wróbel et al., 2020;Zou et al., 2023), anti-bacterial (Al-Zaydi et al., 2017;Green et al., 2022;Morandini et al., 2021a;Morandini et al., 2021b) and many other biological and pharmacological applications (Ali and Naseer, 2023). It should be underlined that this large variety of compounds shares the same core chemical structure but differ not only in application but also in their impacts on environmental, human, and animal health. ...

Triazine Herbicides Risk Management Strategies on Environmental and Human Health Aspects Using In-Silico Methods

International Journal of Molecular Sciences

... 9 The increase in residential consumption levels as represented by the GDP per capita contributed to increased plastic waste and domestic wastewater discharge, thereby increasing the microplastic abundance in sediments. 79,80 Plastic-related production processes, such as using synthetic fibers and the laundering of fiber fabric products, 83,86 and the plastic products widely used in packaging directly release microplastics into the environment. 4,81 This could explain the high proportions of fibrous microplastics in the HML core ( Figure 4A). ...

Aquatic toxicity of tire microplastics on marine and freshwater organisms: An in silico approach
  • Citing Article
  • December 2022

Chemosphere

... By estimating the covariance and standard deviation of each sample point, the Pearson correlation coefficient of each sample can be obtained, and its calculation formula is as follows [11]: ...

Water Resources Allocation in the Tingjiang River Basin: Construction of an Interval-Fuzzy Two-Stage Chance-Constraints Model and Its Assessment through Pearson Correlation

Water

... Brominated flame retardants (BFRs) are commonly used as additives in plastics, textiles and electronics to inhibit combustion [1][2][3]. However, tetrabromobisphenol A (TBBPA) and several other legacy BFRs, such as polybrominated diphenyl ethers, hexabromocyclododecanes and polybrominated biphenyls, have raised great concerns in recent decades due to their persistence, bioaccumulation and potential toxicity [4][5][6], thus some of them have been listed as persistent organic pollutants (POPs) [7] and their applications are restricted [8]. As a result, several TBBPA analogues, including tetrabromobisphenol S (TBBPS) and tetrabromobisphenol A di(allyl ether) (TBBPA-DAE), have been increasingly used as alternatives [9,10]. ...

Human developmental toxicity mechanism of polybrominated biphenyl exposure and health risk regulation strategy for special populations
  • Citing Article
  • June 2022

Ecotoxicology and Environmental Safety

... Organophosphorus flame retardants (OPFRs) are widely used as alternatives to brominated flame retardants (BFRs), and their production and usage are increasing (Dou et al., 2022;Kang et al., 2023). Because OPFRs are linked to the end product via nonchemical bonds and due to their refractory environmental persistence and bioaccumulation (Hou et al., 2016;van der Veen and de Boer, 2012), OPFRs are globally distributed and frequently detected in various environmental media (Meng et al., 2022;Wang et al., 2022;Yang et al., 2022aYang et al., , 2022c. Chlorinated OPFRs (Cl-OPFRs) are more highly used and have a higher detection rate in the environment (Wei et al., 2015), and their global distribution and pollution levels continue to increase (van der Veen and de Boer, 2012;Zou et al., 2022), which substantially increases their risks to the environment and biological health. ...

OPFRs in e-waste sites: Integrating in silico approaches, selective bioremediation, and health risk management of residents surrounding
  • Citing Article
  • January 2022

Journal of Hazardous Materials

... Cho and Lee (2020) developed a waste load allocation problem that minimizes the cost related to water quality management. Hao et al. (2022) applied the interval fuzzy two-stage (IFTS) optimization method to identify the impact of the maximum availability of water in the river basin on the economic benefits. ...

Optimal Allocation of Water Resources and Eco-Compensation Mechanism Model Based on the Interval-Fuzzy Two-Stage Stochastic Programming Method for Tingjiang River
International Journal of Environmental Research and Public Health (IJERPH)

International Journal of Environmental Research and Public Health (IJERPH)

... Therefore, neonicotinoids, which act as agonists of the nicotinic acetylcholine receptors (nAChRs), have been developed into mainstream insecticides for aphid control; due to their broad spectrum, high efficiency, and low toxicity to mammals nAChRs accounted for 25 % of the total insecticide market based on 2017 sales [3]. However, partial neonicotinoids have been banned by the European Union, America and other regions due to their risks to nontarget organisms, especially for pollinators (such as honeybees), in recent years [4,5]. ...

Modeling and regulation of neonicotinoid insecticides exposure in agricultural planting areas for reducing the human health risks
  • Citing Article
  • November 2021

Journal of Cleaner Production