Sébastien Lévesque's research while affiliated with Centre hospitalier universitaire de Sherbrooke and other places

Publications (29)

Article
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Peroxisome biogenesis disorders—Zellweger spectrum disorders (PBD-ZSD)—are primarily autosomal recessive disorders caused by mutations in any of 13 PEX genes involved in peroxisome assembly. Compared to other PEX-related disorders, some PEX16 defects are associated with an atypical phenotype consisting of spasticity, cerebellar dysfunction, preserv...
Article
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Measurement of alpha-glucosidase activity on dried blood spots has been the main method to screen for Pompe disease, but a paradigm shift has been observed in recent years with the incorporation of gene panels and exome sequencing in molecular diagnostic laboratories. An 89-gene panel has been available to Canadian physicians since 2017 and was ana...
Article
Microphthalmia, coloboma and cataract are part of a spectrum of developmental eye disorders in humans affecting ~ 12 per 100 000 live births. Currently, variants in over 100 genes are known to underlie these conditions. However, at least 40% of affected individuals remain without a clinical genetic diagnosis, suggesting variants in additional genes...
Article
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Objective To evaluate the diagnostic yield of an 89-gene panel in a large cohort of patients with suspected muscle disorders and to compare the diagnostic yield of gene panel and exome sequencing approaches. Methods We tested 1,236 patients from outpatient clinics across Canada using a gene panel and performed exome sequencing for 46 other patient...
Article
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Background: HSD10 mitochondrial disease (HSD10MD), originally described as a deficiency of 2-methyl-3-hydroxybutyryl-CoA dehydrogenase (MHBD), is a rare X-linked disorder of a moonlighting protein encoded by the HSD17B10. The diagnosis is usually first suspected on finding elevated isoleucine degradation metabolites in urine, reflecting decreased...
Article
Six patients are described with bi-allelic DUOX2 variants and widely variable phenotypes. Patient 1 is an infant with a compressive hypothyroid goiter causing respiratory distress, which was promptly alleviated by levothyroxine (LT4). He was a compound heterozygote for DUOX2 variants, including a novel deletion of 540 base pairs. Patients 2 and 3 a...
Article
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Background The clinical significance of combined malonic and methylmalonic aciduria due to ACSF3 deficiency (CMAMMA) is controversial. In most publications, affected patients were identified during the investigation of various complaints. Methods Using a cross‐sectional multicenter retrospective natural history study, we describe the course of all...
Article
Background: The clinical significance of combined malonic and methylmalonic aciduria due to ACSF3 deficiency (CMAMMA) is controversial. In most publications, affected patients were identified during the investigation of various complaints. Methods: Using a cross-sectional multicenter retrospective natural history study, we describe the course of...
Article
Purpose We sought to determine the diagnostic yield of whole-exome sequencing (WES) combined with phenotype-driven analysis of variants in patients with suspected genetic disorders. Methods WES was performed on a cohort of 51 patients presenting dysmorphisms with or without neurodevelopmental disorders of undetermined etiology. For each patient, a...
Article
To increase accessibility to genetics services for low-urgency patients seeking Ashkenazi Jewish (AJ) carrier screening, we designed an interactive computer (IC) module that provides pre-test genetics education and allows genetics professionals to order the test without meeting the patients beforehand. We compared this module with in-person genetic...
Article
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Naxos disease is an autosomal recessive condition characterized by: arrhythmogenic right ventricular cardiomyopathy, palmoplantar keratoderma and woolly hair. Seven unrelated Caucasians patients of French-Canadian descent shared the same homozygous mutation in the exon 5 of JUP gene: c.902A > G (p Glu30 1 Gly). This might be secondary to the well-k...
Article
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Background Late-onset Pompe disease (LOPD) is a rare treatable lysosomal storage disorder characterized by progressive lysosomal glycogen accumulation and muscle weakness, with often a limb-girdle pattern. Despite published guidelines, testing for LOPD is often overlooked or delayed in adults, owing to its low frequency compared to other muscle dis...
Article
Background In 1993, Chitayat et al., reported a newborn with hyperphalangism, facial anomalies, and bronchomalacia. We identified three additional families with similar findings. Features include bilateral accessory phalanx resulting in shortened index fingers; hallux valgus; distinctive face; respiratory compromise. Objective(s) To identify the g...
Article
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Methylmalonyl-coA epimerase (MCE) follows propionyl-coA carboxylase and precedes methylmalonyl-coA mutase in the pathway converting propionyl-coA to succinyl-coA. MCE deficiency has previously been described in six patients, one presenting with metabolic acidosis, the others with nonspecific neurological symptoms or asymptomatic. The clinical signi...
Article
Purpose: Truncating mutations in the maternally imprinted, paternally expressed gene MAGEL2, which is located in the Prader-Willi critical region 15q11-13, have recently been reported to cause Schaaf-Yang syndrome, a Prader-Willi-like disease that manifests as developmental delay/intellectual disability, hypotonia, feeding difficulties, and autism...
Article
Retinoic acid (RA) signaling plays a key role in the development and function of several systems in mammals. We previously discovered that the de novo mutations c.1159C>T (p.Arg387Cys) and c.1159C>A (p.Arg387Ser) in the RA Receptor Beta (RARB) gene cause microphthalmia and diaphragmatic hernia. However, the natural history of affected subjects beyo...
Article
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Aicardi-Goutières syndrome (AGS) is a rare genetic disorder with inflammatory immune-mediated pathogenesis. Disease onset is most commonly marked by recurrent fevers, irritability, and developmental regression in the 1st year of life. A stable phase characterized by severe spastic quadriparesis and cognitive deficit follows. Brain calcifications, l...
Article
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Background We propose a phenotype-driven analysis of encrypted exome data to facilitate the widespread implementation of exome sequencing as a clinical genetic screening test. Twenty test-patients with varied syndromes were selected from the literature. For each patient, the mutation, phenotypic data, and genetic diagnosis were available. Next, con...
Article
Cornelia de Lange syndrome (CdLS) is characterized by distinct facial features, growth retardation, upper limb reduction defects, hirsutism, and intellectual disability. NIPBL mutations have been identified in approximately 60% of patients with CdLS diagnosed postnatally. Prenatal ultrasound findings include upper limb reduction defects, intrauteri...
Article
Autosomal dominant polycystic kidney disease (ADPKD), characterizedby multiple bilateral renal cysts, is the most commoninherited disorder of the kidney and an important cause of endstagerenal disease (ESRD). Caroli’s disease is a much less frequentcondition with ectasia of the intrahepatic biliary system. A clearassociation between autosomal reces...
Data
Word document, Supplementary methods including primers sequences for targeted amplification of PEX genes and PCR conditions (Table A) and next generation sequencing workflow (Figure A).
Data
Word document, cDNA sequences and predicted proteins of alternate transcripts (Figure B).
Article
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Background Zellweger syndrome (ZS) is a peroxisome biogenesis disorder due to mutations in any one of 13 PEX genes. Increased incidence of ZS has been suspected in French-Canadians of the Saguenay-Lac-St-Jean region (SLSJ) of Quebec, but this remains unsolved. Methods We identified 5 ZS patients from SLSJ diagnosed by peroxisome dysfunction betwee...
Article
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N-carbamylglutamate (NCG) has been reported to decrease ammonia levels in patients with propionic aciduria (PA) and methylmalonic aciduria (MMA), but reports on clinical outcomes remain scant. Here, we report a retrospective series of four patients with neonatal PA treated with NCG at presentation. Patients presented between 2 and 9 days of age and...
Article
Full-text available
Autosomal dominant polycystic kidney disease (ADPKD), characterized by multiple bilateral renal cysts, is the most common inherited disorder of the kidney and an important cause of end-stage renal disease (ESRD). Caroli's disease is a much less frequent condition with ectasia of the intrahepatic biliary system. A clear association between autosomal...
Article
Full-text available
Familial adenomatous polyposis (FAP) is a rare cause of colorectal cancer and rarely presents in early childhood. Various extracolonic manifestations, however, may be present before the development of overt polyposis. One of the rarest manifestations is the Gardner fibroma (GAF), which has particular histologic features. Here we report the case of...

Citations

... Two missense variants in the CAPN15 gene were assessed in a patient displaying irido-choroidal coloboma associated with a mild developmental delay (A106). Biallelic CAPN15 variants are associated to the oculogastrointestinal-neurodevelopmental syndrome (OMIM #619318), firstly reported in 2020 by Zha et al. [24]. Missense variants are known to be exclusively related to microphthalmia and/ or coloboma [25]. ...
... The most common approaches in NMD genetic diagnostics comprise targeted gene panel (TGP), including clinical exome, and/or whole exome sequencing (WES). It has been revealed that the diagnostic yield of TGP may differ from 15.1% to even 49.3%, depending on the number of study groups and the number of analyzed genes [8][9][10][11]. However, there is a possibility to increase the utility by using a comprehensive TGP, which involves all updated known disease-causing genes with high coverage of these target genes [12]. Barbosa-Gouveia et al. (2022) confirmed that increasing the number of causative genes from 278 to 324 enables to obtain a higher diagnostic rate from 31 to 40% in 268 NMD patients [13]. ...
... Although multisystemic involvement has been reported, central nervous system and cardiac involvement are prominent [7]. HSD10 disease is characterized by metabolic decompensation episodes, lethargy, restlessness, global developmental delay, hypotonia, epilepsy, encephalopathy, progressive psychomotor retardation (frequently after infection or vaccination), microcephaly, movement disorder, gait abnormality, spasticity, visual and hearing impairment, cardiomyopathy (hypertrophic or dilate), speech difficulty, intellectual disability, learning difficulties, autistic features, and behavioral abnormalities [2][3][4][6][7][8][9][10]. ...
... Neonatal transient hyperthyrotropinemia is generally readily attributed to iodine overload, as high iodine levels block TH synthesis by inhibiting organification or to the passage of antithyroid antibodies or ATDs across the placenta; most cases resolve rapidly without the need for levothyroxine treatment (38)(39)(40). Some patients may also present transient CH due to genetic disorders, such as DUOX2/DUOXA2 gene mutation, requiring transient levothyroxine treatment (41). Transient hypothyroxinemia due to an immature hypothalamic-pituitarythyroid axis is frequently observed in preterm neonates (42). ...
... We cloned ACSF2 and ACSF3 cDNA, overexpressed the proteins in COS-1 cells, and demonstrated that both had ACS enzyme activity [2]. While ACSF3 showed a weak ability to activate a 24-carbon very long-chain FA, it was subsequently characterized as malonyl-CoA and methylmalonyl-CoA synthetase [8,9]. Mutations in ACSF3 are causative of combined malonic and methylmalonic aciduria [9]. ...
... The origin of the CMAMMA in affected patients is elucidated by the reduced binding of mutant ZBTB11 to the ACSF3 promoter, as demonstrated by the findings presented by Sumathipala and colleagues. 1 Furthermore, it is important to mention that individuals who have a deficiency in ACSF3 (Acyl-CoA synthetase family, member 3, OMIM*614245) also demonstrate CMAMMA. 15,16 Considering this finding, it may be necessary to include other rare neurodevelopmental disorders in the differential diagnosis, such as methylmalonate semialdehyde dehydrogenase (OMIM 614105) deficiency. This autosomal recessive disorder is caused by variants in the ALDH6A1 gene and is associated with numerous metabolic abnormalities, including methylmalonic aciduria, cataracts, varying degrees of ID, and MRI abnormalities, including delayed myelination and a thin corpus callosum. ...
... Automated analysis tools aim to computationally prioritize variants suspected to be pathogenic based on structured phenotype terms provided by the user. These methods have been reported to increase diagnostic yield and the efficiency of analysis 22,68,69 . However, their sensitivity and specificity remain insufficient to replace the role of a human analyst 70,71 . ...
... An additional 10 knowledge items were added to the post-counselling knowledge scale, composed of 22 items (Q2), α =0.851. The knowledge items were compiled from earlier study (Fan et al. 2018) and items newly developed by the research team for the purpose of this study; they intended to assess knowledge of key concepts regarding RGCS, risks, and reproductive options (Supplementary). A knowledge score (0-22) was calculated for each participant from their responses to the knowledge items. ...
... In most of the ICA genes, pathogenic variants cause primary cardiomyopathy or arrhythmia; however, a small number of genes are associated with syndromic disorders. Recurrent and founder disease-causing variants have been described in some genes [5][6][7]; however, many variants appear to be novel, or private to a family. While there are several well-established ICA genes, there are also many genes where the genotype/phenotype relationship is less definitive [8][9][10][11][12][13]. ...