Sabrina Toland's research while affiliated with University of Pittsburgh and other places

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Publications (2)


Membrane-bound Merkel cell polyomavirus middle T protein constitutively activates PLCγ1 signaling through Src-family kinases
  • Article
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December 2023

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23 Reads

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1 Citation

Proceedings of the National Academy of Sciences

Wen-Yu Peng

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Haibin Shi

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[...]

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Yuan Chang

Merkel cell polyomavirus (MCV or MCPyV) is an alphapolyomavirus causing human Merkel cell carcinoma and encodes four tumor (T) antigen proteins: large T (LT), small tumor (sT), 57 kT, and middle T (MT)/alternate LT open reading frame proteins. We show that MCV MT is generated as multiple isoforms through internal methionine translational initiation that insert into membrane lipid rafts. The membrane-localized MCV MT oligomerizes and promiscuously binds to lipid raft-associated Src family kinases (SFKs). MCV MT-SFK interaction is mediated by a Src homology (SH) 3 recognition motif as determined by surface plasmon resonance, coimmunoprecipitation, and bimolecular fluorescence complementation assays. SFK recruitment by MT leads to tyrosine phosphorylation at a SH2 recognition motif (pMT Y114 ), allowing interaction with phospholipase C gamma 1 (PLCγ1). The secondary recruitment of PLCγ1 to the SFK-MT membrane complex promotes PLCγ1 tyrosine phosphorylation on Y783 and activates the NF-κB inflammatory signaling pathway. Mutations at either the MCV MT SH2 or SH3 recognition sites abrogate PLCγ1-dependent activation of NF-κB signaling and increase viral replication after MCV genome transfection into 293 cells. These findings reveal a conserved viral targeting of the SFK-PLCγ1 pathway by both MCV and murine polyomavirus (MuPyV) MT proteins. The molecular steps in how SFK-PLCγ1 activation is achieved, however, differ between these two viruses.

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Fig. 2. MCV LT multimerizes on the MCV origin. (A) LT specifically bound to wild-type origin but was reduced for tumor-derived mutant, MCV Ori98.Rep-origin DNA. Frequency plots from six DNAs each, with 61 and 22 binding events, respectively. Data collected from multimeric pMC-Ori98 and Ori98.Rep-(1× to 7×) were realigned as single copies. (B) LT protein multimerized on the wild-type Ori98. Representative kymograph for mN-LT K331A (Top) shows that K331A mutation in the LT origin binding domain (OBD) eliminated specific binding to Ori98. Binding was restored (Bottom) when mN-LT K331A was flowed together in the same channel with nonfluorescent wild-type LT. (C) Frequency plots for mN-LT K331A binding to Ori98 without and with nonfluorescent wild-type LT. Data collected from 6 DNA each with 2 and 17 binding events, respectively. (D) Coimmunoprecipitation of LT-FLAG and mN-LT expressed in 293 cells revealed LT multimerization in the absence of origin DNA. Retinoblastoma protein (Rb) detection was used as a positive control for LT pulldown. Representative blot of three repetitions.
Fig. 4. Quantitation of assembly and mean lifetime of LT on the MCV origin. (A) Photobleaching of mN-LT. Representative mN-LT photobleaching (green) measured by photon counts per second. (B) Hidden Markov Model simulation (HMM) to estimate mN-LT molecule numbers for each initial binding event based on photobleaching. Photon counts from initial binding events were recorded using LUMICKS Pylake software and the best model for equal steps of photon loss was determined for each captured DNA. Estimated photon levels are displayed by red dashed lines. Monomer and dimer assemblies were not reliably discriminated and were removed from the analysis. (C) mN-LT assembled to a dodecamer on wild-type Ori98 but not on Ori98.Rep-DNA. Frequency of mN-LT molecules initially bound to Ori98 as determined by HMMs (blue bars, Top) vs. Ori98.Rep-(yellow bars, Bottom). mN-LT dodecamer assembly was observed in 22% of Ori98 binding events, whereas no assemblies greater than nonamer were observed for Ori98.Rep-. Approximately 30% of assemblies were trimers for both Ori98 and Ori98.Rep-. Rare Ori98 assemblies >12 molecules (3.6%) may represent binding to nonreplication pentads in the MCV origin in addition to origin assemblies. Error bars represent SEM among DNAs. A two-sample Kolmogorov-Smirnov test was significantly different for Ori98 and Ori98.Rep-distributions with D = 0.283, P < 0.05. (D) Mean binding lifetime for dodecamer, hexamer, and trimer mN-LT on Ori98 DNA as determined from k off rates corrected for photobleaching. The LT dodecamer has a 17-fold longer mean binding lifetime on origin DNA than the LT hexamer. The two-sample t test showed a significant difference of mean lifetime for 12-mers compared to 6-mers, with P < 0.0001.
Fig. 5. Partially assembled MCV or SV40 LT proteins melt MCV origin dsDNA. (A) ssDNA RAD51 binding occurs after LT assembly on Ori98.Rep-. A representative kymograph from 26 colocalization events for mN-LT (green) and Cy5-RAD51 (red) bound to Ori98.Rep-using six DNAs. The white arrow marks initial mN-LT DNA binding, and the red arrow marks subsequent Cy5-RAD51 assembly. (B) RAD51 cobinding was proportional to LT multimerization and lag time for RAD51 cobinding, after LT binding, decreased exponentially with size of the initially bound LT multimer. (Top) maximum Cy5-RAD51 fluorescence vs. mN-LT molecule assembly number on wild-type Ori98 for dual LT-RAD51 binding events (n, 94). Increased LT multimerization was associated with increased RAD51 ssDNA deposition, R 2 = 0.8608 for a linear regression, and F = 49.48 for the F-test with P = 0.0001. six DNAs, 5 min exposure each. No RAD51 binding was seen for 52 origins that did not bind LT during the experiment. (Bottom) lag time between initial mN-LT and initial Cy5-RAD51 binding to the same origin for dual LT-RAD51 binding events (n, 94). Lag time was inversely related to initial LT multimerization. Dodecameric mN-LT recruited Cy5-RAD51 almost immediately, whereas trimeric mN-LT required 67 s (on average) to attract Cy5-RAD51 binding, R 2 = 0.9509 for an exponential regression. (C) Nonreplicative SV40 LT melts MCV origin. (Top) GFP-SV40 LT (green) did not form hexamers on MCV Ori98 but was associated with DNA melting and subsequent Cy5-RAD51 (red) colocalization (white arrows). (Bottom) frequency of estimated SV40 LT-GFP multimers initially binding to MCV origin. Data collected from 12 DNAs, 5 min each. (D) SV40 LT melts the SV40 origin. GFP-SV40 LT (green) was associated with DNA melting and Cy5-RAD51 (red) colocalization (white arrows) on SV40 origin. (Bottom) frequency of estimated SV40 LT-GFP multimers initially binding to SV40 origin showed preferred hexamer and dodecamer assembly. Data were collected from six DNAs, 5 min each. Notably, sub-double-hexameric SV40 LT binding events were also observed to melt SV40 origin in a fashion similar to MCV LT on MCV origin.
Fig. 6. MCV LT melts MCV origin dsDNA in the absence of helicase activity. (A) MCV LT domains with truncation and site-directed mutation sites denoted. (B) Deletions of the MCV LT helicase domain (LT700 and LT610), but not the zinc-finger multimerization domain (LT455), retained capacity to melt MCV origin DNA. Representative kymographs for full-length LT, LT700, LT610, and LT455 binding are shown with 5 pMC-Ori98 DNAs for 5 min each. (C) MCV origin DNA melting by MCV LT required ATP binding but not hydrolysis. mN-LT (green) and Cy5-RAD51 colocalization (Top) was lost when nuclear extracts were treated with apyrase to eliminate ATP. Both mN-LT and Cy5-RAD51 binding to Ori98 were restored after apyrase treatment by exposure to 1 mM nonhydrolyzable AMP-PNP. Representative kymographs from 5 pMC-Ori98(4X) DNAs each, 5 min exposure. (D) MCV LT formed dodecameric assemblies on MCV origin DNA in the absence of hydrolyzable ATP. Frequency of estimated mN-LT multimers initially binding to MCV Ori with 1mM AMP-PNP. Data were collected from six DNAs, 5 min each. Error bars represent SEM among DNAs.
Fig. 7. Models for CMG and MCV LT helicase initiation of dsDNA melting for recruitment of replication machinery. (A) Model for eukaryotic CMG helicase initiation of DNA replication (4, 6). CMG double hexamer first assembles around dsDNA during the late M/G1 phase. On S phase entry, CMG melts origin DNA by ATP-driven DNA distortion and then hexamers remodel around ssDNA. The two hexamers bypass each other to initiate dsDNA unzipping and recruitment of the replisome. (B) Model for MCV and SV40 LT origin melting. After initial LT binding to viral DNA pentads using LT origin binding domains, LT multimerizes to pry apart the MCV origin sequence and melt dsDNA in the absence of ATP hydrolysis. Hexamers then directly assemble around ssDNA. Once assembled, the MCV LT initiates ATP-driven helicase processivity similarly to cellular CMG.
Unlicensed origin DNA melting by MCV and SV40 polyomavirus LT proteins is independent of ATP-dependent helicase activity

July 2023

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61 Reads

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2 Citations

Proceedings of the National Academy of Sciences

Cellular eukaryotic replication initiation helicases are first loaded as head-to-head double hexamers on double-stranded (ds) DNA origins and then initiate S-phase DNA melting during licensed (once per cell cycle) replication. Merkel cell polyomavirus (MCV) large T (LT) helicase oncoprotein similarly binds and melts its own 98-bp origin but replicates multiple times in a single cell cycle. To examine the actions of this unlicensed viral helicase, we quantitated multimerization of MCV LT molecules as they assembled on MCV DNA origins using real-time single-molecule microscopy. MCV LT formed highly stable double hexamers having 17-fold longer mean lifetime (τ, >1,500 s) on DNA than single hexamers. Unexpectedly, partial MCV LT assembly without double-hexamer formation was sufficient to melt origin dsDNA as measured by RAD51, RPA70, or S1 nuclease cobinding. DNA melting also occurred with truncated MCV LT proteins lacking the helicase domain, but was lost from a protein without the multimerization domain that could bind only as a monomer to DNA. SV40 polyomavirus LT also multimerized to the MCV origin without forming a functional hexamer but still melted origin DNA. MCV origin melting did not require ATP hydrolysis and occurred for both MCV and SV40 LT proteins using the nonhydrolyzable ATP analog, adenylyl-imidodiphosphate (AMP-PNP). LT double hexamers formed in AMP-PNP, and melted DNA, consistent with direct LT hexamer assembly around single-stranded (ss) DNA without the energy-dependent dsDNA-to-ssDNA melting and remodeling steps used by cellular helicases. These results indicate that LT multimerization rather than helicase activity is required for origin DNA melting during unlicensed virus replication.

Citations (1)


... La synthèse de l'ADN pourrait débuter par une coupure simple brin (puis ligation) du génome par K4. L'ouverture temporaire de l'ADN permettrait l'entrée de deux hexamères de l'hélicase D5 (sous forme d'anneau fermé) [52] comme il a été décrit pour d'autres hélicases de la famille SFIII [56]. La synthèse d'une amorce ARN par le domaine primase de D5 (noté « d », figure 3B) serait suivi du recrutement de l'holoenzyme ADN polymérase E9/A20/D4 permettant la synthèse du brin direct (figure 3C). ...

Reference:

Poxvirus-encoded DNA replication proteins: potential targets for antivirals
Unlicensed origin DNA melting by MCV and SV40 polyomavirus LT proteins is independent of ATP-dependent helicase activity

Proceedings of the National Academy of Sciences