Peter D. Nellist's research while affiliated with University of Oxford and other places

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Publications (400)


Relativistic EELS scattering cross-sections for microanalysis based on Dirac solutions
  • Preprint
  • File available

May 2024

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20 Reads

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Hamish Brown

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Peter D. Nellist

The rich information of electron energy-loss spectroscopy (EELS) comes from the complex inelastic scattering process whereby fast electrons transfer energy and momentum to atoms, exciting bound electrons from their ground states to higher unoccupied states. To quantify EELS, the common practice is to compare the cross-sections integrated within an energy window or fit the observed spectrum with theoretical differential cross-sections calculated from a generalized oscillator strength (GOS) database with experimental parameters. The previous Hartree-Fock-based and DFT-based GOS are calculated from Schr\"odinger's solution of atomic orbitals, which does not include the full relativistic effects. Here, we attempt to go beyond the limitations of the Schr\"odinger solution in the GOS tabulation by including the full relativistic effects using the Dirac equation within the local density approximation, which is particularly important for core-shell electrons of heavy elements with strong spin-orbit coupling. This has been done for all elements in the periodic table (up to Z = 118) for all possible excitation edges using modern computing capabilities and parallelization algorithms. The relativistic effects of fast incoming electrons were included to calculate cross-sections that are specific to the acceleration voltage. We make these tabulated GOS available under an open-source license to the benefit of both academic users as well as allowing integration into commercial solutions.

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Schematic diagram of the synthesis of C‐Cu2O, T‐Cu2O, O‐Cu2O and C‐Cu2O‐A, T‐Cu2O‐A, O‐Cu2O‐A.
Crystal structure characterization. a–c) FESEM and TEM images (inset) of C‐Cu2O (a), T‐Cu2O (b), and O‐Cu2O (c) (scale bars: 200 nm). d,e) HAADF‐STEM images and the corresponding atomic models of (111) facets (d) and (100) facets (e) of Cu2O (scale bars: 0.5 nm). f–i) Adsorption structures of SO4²⁻ (f) and Cu²⁺ (g) on Cu2O (111) facets, and h,i) SO4²⁻ (h) and Cu²⁺ (i) on Cu2O (100) facets.
Chemical composition analysis. a) XRD patterns and b) FT‐IR spectra of C‐Cu2O, T‐Cu2O and O‐Cu2O. c) Cu K‐edge XANES spectra of C‐Cu2O, T‐Cu2O, O‐Cu2O, Cu2O, and Cu foil (inset: an enlarged view of the dashed box). d–f) Wavelet transform‐EXAFS spectra of K‐edge of C‐Cu2O (d), T‐Cu2O (e), and O‐Cu2O (f). g) R‐space FT‐EXAFS spectra of Cu K‐edge of C‐Cu2O, T‐Cu2O and O‐Cu2O. h,i) XPS high‐resolution spectra at O 1s edge (h) and Cu 2p edge (i) of C‐Cu2O and O‐Cu2O.
Electrochemical performance for HER. a) Polarization curves and b) Tafel plots of C‐Cu2O, T‐Cu2O, and O‐Cu2O in alkaline electrolyte. The FTO glass coated with the Cu2O samples, a graphite rod, and an Hg/HgO/OH⁻ electrode were employed as the working electrode, counter electrode, and reference electrode, respectively in all the measurements. c) Comparison of Tafel slopes and the overpotentials needed to deliver cathodic current densities of 10, 50, and 100 mA cm⁻² for C‐Cu2O, T‐Cu2O, and O‐Cu2O. d) Capacitive current measured at 0.25 V vs RHE for C‐Cu2O, T‐Cu2O and O‐Cu2O as a function of scan rate. e) Mass activity of C‐Cu2O, T‐Cu2O and O‐Cu2O. f) Chronoamperometry measurement of O‐Cu2O at an applied voltage of −0.16 V vs RHE (inset: electrolyte contact angle measurements of C‐Cu2O, T‐Cu2O, and O‐Cu2O). g) Comparison of HER activity with some recently reported Cu‐based catalysts in alkaline electrolyte. h) Gibbs free energy diagrams of C‐Cu2O, T‐Cu2O and O‐Cu2O for HER in alkaline electrolyte. i,j) Bader charge analysis of (111) facets (i) and (100) facets (j) of Cu2O, and the Cu active sites are highlighted by the orange circles.
Crystal structure characterization after HER. a) FESEM and b) TEM images of O‐Cu2O‐A (scale bars: 200 nm). c) HRTEM image and d) SAED pattern of O‐Cu2O‐A (scale bar: 5 nm). e) STEM and elemental mapping images of O‐Cu2O‐A (scale bar: 200 nm). f) HAADF‐STEM image of O‐Cu2O‐A and the corresponding simulated atomic model (scale bar: 0.5 nm), and the yellow hexagons represent oxygen vacancies.

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In‐Situ‐Grown Cu Dendrites Plasmonically Enhance Electrocatalytic Hydrogen Evolution on Facet‐Engineered Cu2O

September 2023

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201 Reads

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7 Citations

Advanced Materials

Advanced Materials

Herein, facet‐engineered Cu2O nanostructures are synthesized by wet chemical methods for electrocatalytic HER, and it is found that the octahedral Cu2O nanostructures with exposed crystal planes of (111) (O‐Cu2O) has the best hydrogen evolution performance. Operando Raman spectroscopy and ex‐situ characterization techniques showed that Cu2O is reduced during HER, in which Cu dendrites are grown on the surface of the Cu2O nanostructures, resulting in the better HER performance of O‐Cu2O after HER (O‐Cu2O‐A) compared with that of the as‐prepared O‐Cu2O. Under illumination, the onset potential of O‐Cu2O‐A is ca. 52 mV positive than that of O‐Cu2O, which is induced by the plasmon‐activated electrochemical system consisting of Cu2O and the in‐situ generated Cu dendrites. Incident photon‐to‐current efficiency (IPCE) measurements and the simulated UV–Vis spectrum demonstrate the hot electron injection (HEI) from Cu dendrites to Cu2O. Ab initio nonadiabatic molecular dynamics (NAMD) simulations revealed the transfer of photogenerated electrons (27 fs) from Cu dendrites to Cu2O nanostructures is faster than electron relaxation (170 fs), enhancing its surface plasmons activity, and the HEI of Cu dendrites increases the charge density of Cu2O. These make the energy level of the catalyst be closer to that of H⁺/H2, evidenced by the plasmon‐enhanced HER electrocatalytic activity.


Quantification of 3D atomic structures and their dynamics from scanning transmission electron microscopy data

August 2023

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24 Reads








Atomistic Understanding of the Coherent Interface Between Lead Iodide Perovskite and Lead Iodide

July 2023

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51 Reads

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3 Citations

Metal halide perovskite semiconductors have shown great performance in solar cells, and including an excess of lead iodide (PbI 2 ) in the thin films, either as mesoscopic particles or embedded domains, often leads to improved solar cell performance. Atomic resolution scanning transmission electron microscope micrographs of formamidinium lead iodide (FAPbI 3 ) perovskite films reveal the FAPbI 3 :PbI 2 interface to be remarkably coherent. It is demonstrated that such interface coherence is achieved by the PbI 2 deviating from its common 2H hexagonal phase to form a trigonal 3R polytype through minor shifts in the stacking of the weakly van‐der‐Waals‐bonded layers containing the near‐octahedral units. The exact crystallographic interfacial relationship and lattice misfit are revealed. It is further shown that this 3R polytype of PbI 2 has similar X‐ray diffraction (XRD) peaks to that of the perovskite, making XRD‐based quantification of the presence of PbI 2 unreliable. Density functional theory demonstrates that this interface does not introduce additional electronic states in the bandgap, making it electronically benign. These findings explain why a slight PbI 2 excess during perovskite film growth can help template perovskite crystal growth and passivate interfacial defects, improving solar cell performance.


Citations (41)


... [29] Differently, the low stability feature of Cu 2 O was also utilized to activate the reactant molecules with the formed Cu 0 species in the electrochemical/chemical conversions. [41,42] As a unique COFs, TpPa-2-COF is a narrow band gap photocatalytic material with high reduction ability and wide visible light response. So, we reasoned that the exposed Cu ions in Cu 2 O have the chance to be reduced into Cu 0 when receiving electrons from COFs in photocatalytic reaction under visible light, which may benefit photocatalytic H 2 evolution reaction by Cu 0 serving as cocatalyst. ...

Reference:

Self‐Accelerating H2 Evolution Activity by In Situ Transformation on Noble‐Metal‐Free Photocatalyst of Covalent Organic Framework and Cu2O Composite
In‐Situ‐Grown Cu Dendrites Plasmonically Enhance Electrocatalytic Hydrogen Evolution on Facet‐Engineered Cu2O
Advanced Materials

Advanced Materials

... However, at significantly reduced dwell times the temporal response of the detector becomes important. Several works have previously shown how scintillator-based detectors have a scintillation decay time which causes the duration of single electron events to last over 0.5 µs, sometimes as long as 1.5 µs [35][36][37][38][39][40][41]. When scanning at dwell times slower than around twice the scintillator decay time, the effects of this afterglow is negligible, but for faster scans, the image begins to suffer from streaking artefacts as a result of scintillator decay [35,40]. ...

How Fast is Your Detector? The Effect of Temporal Response on Image Quality

Microscopy and Microanalysis

... On one hand, the structural information of materials can be imaged with a much lower electron dose and a wavelength limited spatial resolution compared to conventional STEM imaging techniques. This broadens the application scope of STEM imaging to include high-resolution structural characterization of beamsensitive materials (Pennycook et al., 2019;Jannis et al., 2021;Pennycook et al., 2020;Hao Yang et al., 2016;Lozano et al., 2018;Song et al., 2019), and even biological samples (Zhou et al., 2020;Pei et al., 2023). On the other hand, accurate correction of residual lens aberrations enables delivery of electromagnetic fields related to material functionalities with high fidelity(H. . ...

Cryogenic electron ptychographic single particle analysis with wide bandwidth information transfer

Nature Communications

... hydrogen energy. [1,2] However, the quantum efficiency of the hydrogen evolution reaction (HER) in overall water splitting is significantly hindered by the lethargic kinetics of water oxidation. [3] While the use of sacrificial reagents (e.g., triethanolamine, lactic acid, Na 2 S/Na 2 SO 3 , etc.) as hole scavengers can accelerate the oxidation half-reaction and H 2 production, [4,5] this approach is counterproductive due to the inevitable waste of hole energy, increased costs and carbon emissions. ...

Templated 2D Polymer Heterojunctions for Improved Photocatalytic Hydrogen Production
Advanced Materials

Advanced Materials

... For quite a range of thicknesses, central focusing of the beam offers phase images free from contrast reversals and with the strongest contrast overall [5,15,20]. However this conflicts with the optimal focus for ADF imaging, the entrance surface. Thus optimizing the probe focus for the phase images during acquisition can significantly degrade the quality of simultaneously acquired ADF images, especially as the sample thickness increases and the distance between the entrance surface and optimal focus for ptychography widens. ...

The Effect of Dynamical Scattering on Single-plane Phase Retrieval in Electron Ptychography

Microscopy and Microanalysis

... The improvement in column position measurements over all dose settings again indicates the proper correction of scan-line and fast-scan distortions. The improvement of SCS measurement accuracies, especially at low-dose conditions greatly decreases the chance of miscounting atoms in the structure, which in turn may be very beneficial, e.g., for the reconstruction of 3D information from atom counts 52,53 . ...

Experimental reconstructions of 3D atomic structures from electron microscopy images using a Bayesian genetic algorithm

npj Computational Materials

... In the cases where the resolution is strongly restricted, it is possible that there is no option to improve the sensitivity using any GPA based strain characterization method and obtain unusable strain mappings. Alternative strain characterization methods should be considered such as Precession Electron Diffraction and Four-dimensional STEM [38][39][40][41][42] or simply directly measure the lattice deformation in real space using the Peak Pair algorithm, Peak Finding methods, template matching, atomap, StatSTEM, etc. [43][44][45][46][47][48][49][50][51]. For electron diffraction methods, the strain sensitivity and precision are independent of the probe position. ...

High-precision atomic-scale strain mapping of nanoparticles from STEM images
  • Citing Article
  • May 2022

Ultramicroscopy

... Particularly, because the orientations of the octahedra in Li layers of O1 and O3 phases are different, reconstruction of oxygen ions is supposed to occur at the interface. Techniques that are sensitive to light elements such as annular bright-field (ABF) imaging 38 or other approaches 39,40 could be used in the future to deepen our understanding of these O1-O3 interfaces formed in the chemomechanically deformed structures. Yet, the beam sensitivity of the O1 phase as well as the sample thickness requirement are two big challenges. ...

Direct imaging of oxygen shifts associated with the oxygen redox of Li-rich layered oxides
  • Citing Article
  • May 2022

Joule

... Similar to the PIO-YSZ sample, alignment of the 4D-STEM defocus series was performed using simultaneously acquired HAADF-STEM images. However, in this case a method for non-rigid registration of images (Jones et al. (2015)) was extended to a series of 4D-STEM data sets (O'Leary et al. (2022)). The deformations found from synchronously acquired HAADF data were applied to the 4D-STEM data sets by flattening the diffraction space, registering each real-space slice and transforming back to 4D. ...

Increasing Spatial Fidelity and SNR of 4D-STEM Using Multi-Frame Data Fusion

Microscopy and Microanalysis

... We relaxed the runtime by utilizing the PRISM STEM-EELS approximation, achieving over a ten-fold speedup (see Methods) [33]. Future work may explore the effects of smaller ADF collection angles with increased coherence lengths and crystallographic contrast [15,34], or thicker specimens where electron channeling becomes more concerning [35,36]. ...

Combining ADF-EDX scattering cross-sections for elemental quantification of nanostructures
  • Citing Article
  • August 2021

Microscopy and Microanalysis