Nicklas Myrthue Thorsen's research while affiliated with Statens Serum Institut and other places

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Publications (4)


Figure 1. Dataflow from test request to reporting of the final result to the requesting doctor, to the tested person and to MiBa for the national surveillance and display of statistics as well as for reporting of positive cases to the Danish Patient Safety Authority. Abbreviations: POCT: Point Of Care Testing, SSI: Statens Serum Institut, TCDK: Test Center Denmark, WebReq:Web-based electronic request system[20] Up load mechanisms for private vendors and school screening is not included in this outline of the system, for clarity reasons.
Fig. 3. Distributions of turnaround times in hours. For the Health care track, turnaround times are shown for 1,936,468 samples analyzed at the regional clinical microbiology laboratories from March to November 2020. For the Community track, turnaround times are shown for 2,907,660 samples analyzed at TestCenter Denmark from July to November. The red points are the 95% quantiles. The plot is a so-called violinplot showing the density distribution of the turnaround times (the areas are normalized to the same size). Samples with turnaround times below 4 h are due to point of care testing.
Fig. 4. Number of all enquiries to MiBa per month, including enquiries for non-COVID-19-related reports in the period from January 2019 to December 2020. During the year 2015, the monthly number of enquiries increased from on average x to y. Each time a person's test results is accessed in MiBa, it is counted as one enquiry, regardless of the number of reports accessed.
Fig. 5. Rolling 7-day incidences of COVID-19 cases at national and regional levels from March to December 2020. The curves show the data from the whole country, Capital Region of Denmark; Central Jytland: Central Denmark Region; Northern Jutland: North Denmark Region; Zealand: Region Zealand; Southern Denmark: Region of Sothern Denmark.
Fig. 7. Effective reproduction number (Rt) corrected for variations in test activity at the national level (A) and the Central Denmark Region (B). The Rt calculations are based on the model also described in Fig. 6. For further details about these calculations (https://www.ssi.dk/-/media/ssi-files/ekspertrapport-af-den-23-oktober-2020-incidens-og-fremskrivning-af-covid 19-tilflde.pdf?la=da). In short, the model is a consideration of the complex testing behavior and uses a 7 day smoothing. The letters designate: A: Early limited reopening on April 15, B: Late reopening on May 19, C: Border reopening June 18, D: School summer holiday starts June 28, E: School summer holiday ends August 10, F: Mandatory use of masks in public transport August 15, G: Universities open September 1, H: Work from home recommendations September18, I: Mandatory use of masks in public areas (in doors) October 28, J: Second lockdown.
Electronic reporting of diagnostic laboratory test results from all health care sectors is a cornerstone of national preparedness and control of COVID‐19 in Denmark
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May 2021

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137 Reads

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56 Citations

Apmis

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RBC Dessau

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Thøger Gorm Jensen

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The COVID-19 pandemic has led to an unprecedented demand for real-time surveillance data in order to inform critical decision makers regarding the management of the pandemic. The aim of this review is to describe how the Danish national microbiology database, MiBa, served as a cornerstone for providing data to the real-time survelliance system by linkage to other nationwide health registries. The surveillance system was established on an existing IT health infrastructure and a close network between clinical microbiologists, information technology experts and public health officials. In 2020, testing capacity for SARS-CoV-2 was ramped up from none to over 10,000 weekly PCR tests per 100,000 population. The crude incidence data mirrored this increase in testing. Real-time access to denominator data and patient registries enabled adjustments for fluctuations testing activity, providing robust data on crude SARS-CoV-2 incidence during the changing diagnostic and management strategies. The use of the same data for different purposes, e.g. final laboratory reports, information to the public, contact tracing, public health and science, has been a critical asset for the pandemic response.It has also raised issues concerning data protection and critical capacity of the underlying technical systems and key ressources. However, even with these limitations, the set-up has enabled decision makers to adopt timely interventions. The experiences from COVID-19 may motivate a transformation from traditional indicator based public health surveillance to an all-encompassing information system based on access to a comprehensive set of data sources, including diagnostic and reference microbiology.

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Descriptive characteristics of 14 068 girls attending 5 th -9th grade in public schools (Copenhagen, Denmark) during 1 August 2013-23 January 2018
Human papillomavirus vaccination and all-cause morbidity in adolescent girls: a cohort study of absence from school due to illness

February 2021

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56 Reads

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5 Citations

International Journal of Epidemiology

Background: A growing body of evidence supports the safety of the human papillomavirus (HPV) vaccines. However, concerns about autonomic dysfunction syndromes and non-specific symptoms continue to linger. These conditions are not easily captured by traditional diagnostic classification schemes and call for innovative approaches to the study of vaccine safety which take more general measures of all-cause morbidity into account. Methods: Taking advantage of the unique Danish registers, including regional registration of absence from school, we conducted a cohort study of 14 068 adolescent Danish girls attending 5th through 9th grade in public schools in the municipality of Copenhagen during 1 August 2013-23 January 2018. We obtained time-varying HPV vaccination status and demographic information from nationwide registers. Using Poisson regression with random effects, we estimated rate ratios (RRs) of absence due to illness, comparing HPV-vaccinated girls with unvaccinated girls with adjustment for grade, season, calendar period, demographic factors and random effects at the individual, class and school levels. Results: Our study included 6 206 188 school days with 213 221 days of absence from school due to illness (absence rate, 3.4%). Comparing absence rates due to illness in HPV-vaccinated and unvaccinated girls yielded an adjusted RR of 1.00 (95% confidence interval [CI], 0.98-1.03). Conclusions: Our study provides an important and novel contribution to HPV vaccine safety. Using absence from school records, we were able to address important safety concerns without relying on medical diagnoses. We conclude that HPV vaccination does not increase the risk of morbidity in any manner that manifests as absence from school due to illness.


Descriptive characteristics of 869 cases of autonomic dysfunction syndrome among female participants aged 10-44 born in Denmark during 2007-16. Results are shown as median (interquartile range)
Association between quadrivalent human papillomavirus vaccination and selected syndromes with autonomic dysfunction in Danish females: Population based, self-controlled, case series analysis

September 2020

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124 Reads

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21 Citations

The BMJ

Objective: To evaluate the association between quadrivalent human papillomavirus vaccination and syndromes with autonomic dysfunction, such as chronic fatigue syndrome, complex regional pain syndrome, and postural orthostatic tachycardia syndrome. Design: Population-based self-controlled case series. Setting: Information on human papillomavirus vaccinations and selected syndromes with autonomic dysfunction (chronic fatigue syndrome, complex regional pain syndrome, and postural orthostatic tachycardia syndrome) identified using ICD-10 (international classification of diseases, revision 10) diagnostic codes from Danish nationwide registers. Participants: 869 patients with autonomic dysfunction syndromes from a cohort of 1 375 737 Danish born female participants aged 10 to 44 years during 2007-16. Main outcome measures: Self-controlled case series rate ratios (95% confidence intervals) of the composite outcome of chronic fatigue syndrome, complex regional pain syndrome, and postural orthostatic tachycardia syndrome, adjusted for age and season, comparing female participants vaccinated and unvaccinated with the quadrivalent human papillomavirus vaccine. Chronic fatigue syndrome, complex regional pain syndrome, and postural orthostatic tachycardia syndrome were also considered separately in secondary analyses. Results: During 10 581 902 person years of follow-up, 869 female participants with syndromes of autonomic dysfunction (136 with chronic fatigue syndrome, 535 with complex regional pain syndrome, and 198 with postural orthostatic tachycardia syndrome) were identified. Quadrivalent human papillomavirus vaccination did not statistically significantly increase the rate of a composite outcome of all syndromes with autonomic dysfunction in a 365 day risk period following vaccination (rate ratio 0.99, 95% confidence interval 0.74 to 1.32) or the rate of any individual syndrome in the risk period (chronic fatigue syndrome (0.38, 0.13 to 1.09), complex regional pain syndrome (1.31, 0.91 to 1.90), or postural orthostatic tachycardia syndrome (0.86, 0.48 to 1.54)). Conclusions: When vaccination is introduced, adverse events could occur in close temporal relation to the vaccine purely by chance. These results do not support a causal association between quadrivalent human papillomavirus vaccination and chronic fatigue syndrome, complex regional pain syndrome, or postural orthostatic tachycardia syndrome, either individually or as a composite outcome. An increased risk of up to 32% cannot be formally excluded, but the statistical power of the study suggests that a larger increase in the rate of any syndrome associated with vaccination is unlikely.


Ten most common adverse event (AE) terms within clusters of reports of serious AE following human papillomavirus vaccination in females, Denmark, 12 September 2009-17 July 2017 (n = 963)
Temporal features of clusters of reports of serious adverse events following human papillomavirus vaccination in females, Denmark, 12 September 2009-17 July 2017 (n = 963)
A cluster analysis of serious adverse event reports after human papillomavirus (HPV) vaccination in Danish girls and young women, September 2009 to August 2017

May 2019

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199 Reads

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22 Citations

European Communicable Disease Bulletin

Background Suspected adverse events (AE) after human papillomavirus (HPV) vaccines include postural orthostatic tachycardia syndrome (POTS), chronic fatigue syndrome (CFS), complex regional pain syndrome (CRPS) and symptoms including headache and orthostatic intolerance.AimWe aimed to identify phenotypes of AEs after HPV vaccination, defined as patterns of AE terms (signs, symptoms, diagnoses), and to evaluate if identified phenotypes reflected previously suspected symptomatology or heightened public concerns over HPV vaccine safety since 1 January 2015.Methods We conducted a retrospective observational study using latent class cluster analysis of all serious AE reports (n = 963) reported by females residing in Denmark between September 2009 and August 2017. Resulting clusters were characterised according to AE terms associated with POTS, CFS and CRPS before (September 2009-December 2014) and during (January 2015-August 2017) a time of heightened media activity regarding HPV vaccines.ResultsFour clusters of AE reports were distinguished. The most common symptoms were fatigue, dizziness and headache but their frequency varied among clusters. The majority of reports in one cluster were submitted during a period of heightened media activity, including an anomalous spike in submissions in December 2015; a high proportion of these reports included the symptoms cognitive disorder (78%), abdominal pain (77%), dysuria (60%) and sleep disorder (60%).Conclusions Non-specific symptoms including headache, fatigue and dizziness feature prominently in serious AE reports from females in Denmark. Our analysis identified a cluster of reports, likely media stimulated, with a focus on symptoms of CFS and POTS.

Citations (4)


... A high frequency of positive SARS-CoV-2 samples were whole genome sequenced and the information on SARS-CoV-2 including sublineage was retrieved from the Danish national microbiology database (https://www.covid19genomics.dk/ nextstrain) [16]. We used a cut-off point corresponding to ...

Reference:

COVID-19 severity in patients with chronic lymphocytic leukemia treated with venetoclax: a single-center observational cohort study
Electronic reporting of diagnostic laboratory test results from all health care sectors is a cornerstone of national preparedness and control of COVID‐19 in Denmark

Apmis

... In both men and women, HPV infections are the most common a global shortage of the HPV vaccine, the country is introducing the vaccine in a single age cohort (14-year-old girls) in the first year and hopes to expand the introduction to additional age cohorts in the second year and beyond, based on global vaccine availability. If the vaccine shortage persists, the country will continue to vaccinate 14-year-old girls every year [17]. ...

Human papillomavirus vaccination and all-cause morbidity in adolescent girls: a cohort study of absence from school due to illness

International Journal of Epidemiology

... There seemed to be a predilection for the female gender and younger and middleaged patients, as most cases included the 17-53 age group. POTS has also been reported post-HPV vaccine, which occurs on average ~90 days (but even exceeding a year) after receiving the vaccine in patients aged 12-32 years [15][16][17]. Our patient received the HPV booster three months prior to symptom onset, which could be considered a confounder. ...

Association between quadrivalent human papillomavirus vaccination and selected syndromes with autonomic dysfunction in Danish females: Population based, self-controlled, case series analysis

The BMJ

... In LCA, various goodness-of-fit diagnostics are applied to identify the optimal number of subgroups [18][19][20]. In our dataset, the parameters selected for a LCA indicators were MedDRA SOCs included in each ICSR [21]. The model parameters estimated were the probability of a report belonging to a specific cluster and the conditional probabilities of each SOC term given to the cluster using maximum likelihood estimation [21]. ...

A cluster analysis of serious adverse event reports after human papillomavirus (HPV) vaccination in Danish girls and young women, September 2009 to August 2017

European Communicable Disease Bulletin