June 2018
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311 Reads
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21 Citations
Journal of Biological Chemistry
Dickkopf (Dkk) family proteins are important regulators of Wnt signalling pathways, which play key roles in many essential biological processes. Here we report the first detailed structural and dynamics study of a full-length mature Dkk protein (Dkk4, residues 19-224), including determination of the first atomic resolution structure for the N-terminal cysteine-rich domain (CRD1) conserved among Dkk proteins. We discovered that CRD1 has significant structural homology to the Dkk C-terminal cysteine-rich domain (CRD2), pointing to multiple gene duplication events during Dkk family evolution. We also show that Dkk4 consists of two independent folded domains (CRD1 and CRD2) joined by a highly flexible, non-structured linker. Similarly, the N-terminal region preceding CRD1 and containing a highly conserved NXIR/K sequence motif was shown to be dynamic and highly flexible.We demonstrate that Dkk4 CRD2 mediates high-affinity binding to both the E1E2 region of LDL receptor-related protein 6 (LRP6 E1E2) and the Kremen1 (Krm1) extracellular domain. In contrast, the N-terminal region alone bound with only moderate affinity to LRP6 E1E2, consistent with binding via the conserved NXIR/K motif, but did not interact with Krm proteins. We also confirmed that Dkk and Krm family proteins function synergistically to inhibit Wnt signalling. Insights provided by our integrated structural, dynamics, interaction and functional studies have allowed us to refine the model of synergistic regulation of Wnt signalling by Dkk proteins. Our results indicate the potential for the formation of a diverse range of ternary complexes comprising Dkk, Krm and LRP5/6 proteins, allowing fine-tuning of Wnt-dependent signalling.