Jose Francisco L. Figueiredo's research while affiliated with University of Florida and other places

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Publications (6)


Fig. 1 Xanthomonas citri 306 transcription activator-like effector (TALE) recognition by pepper Bs3 promoter in transient GUSi reporter assay. Grapefruit leaves were infiltrated initially with bacterial suspension [5 3 10 8 colony-forming units (cfu)/mL] of Agrobacterium carrying a GUSi fusion with the Bs3 native promoter (ProBs3 1EBE :GUSi) or the Bs3 promoter with 14 effector binding elements (EBEs) (ProBs3 14EBE :GUSi), and infiltrated, 5 h later, with Xcc306, Xcc306DpthA1-4, Xcc306DpthA1-4:avrBs3 or Xcc306:avrBs3. The infiltrated leaves were assayed for b-glucuronidase (GUS) activity by measuring 4-methyl umbelliferone (4-MU) fluorescence 5 days after subsequent inoculation, expressed as nanomoles 4-MU per minute per milligram protein. Data represent the mean 6 standard error (SE) of three independent experiments.
Fig. 2 Induction of ProBs3 14EBE :GUSi by a wide range of Xanthomonas citri strains. Grapefruit leaves were infiltrated with bacterial suspension [5 3 10 8 colony-forming units (cfu)/mL] of Agrobacterium containing ProBs3 14EBE :GUSi in a binary vector, and infiltrated, 5 h later, with bacterial suspensions (adjusted to approximately 5 3 10 8 cfu/mL) of Xanthomonas citri strains or water. The infiltrated leaves were assayed for b-glucuronidase (GUS) by measuring 4-methyl umbelliferone (4-MU) fluorescence 5 days after inoculation, expressed as nanomoles 4-MU per minute per milligram protein. Data represent the mean 6 standard error (SE) of three independent experiments.
Fig. 4 Expression of avrGf1 under transcriptional control of an engineered Bs3 promoter containing 14 effector binding elements (EBEs) (ProBs3 14EBE :avrGf1) is tightly regulated for resistance in grapefruit leaves. (A) Grapefruit leaves were infiltrated with a bacterial suspension [5 3 10 8 colony-forming units (cfu)/mL] of Agrobacterium carrying ProBs3 14EBE :avrGf1 or the empty vector, and infiltrated, 5 h later, with Xanthomonas citri ssp. citri 306 containing pLAFR3::avrBs3 (Xcc306: avrBs3) or Xcc306 containing pLAFR3 empty vector. A hypersensitive response after 3 days was apparent on the right side of the midrib in which ProBs3 14EBE :avrGf1 was infiltrated following infiltration with Xcc306 or Xcc306 containing pLAFR3::avrBs3. (B) As a control for an AvrBs3 interaction with ProBs3 14EBE :avrGf1, grapefruit leaves were transiently transformed with Agrobacterium carrying ProBs3 14EBE :avrGf1 or the empty vector, and infiltrated, 5 h later, with Xcc306DpthA1-4 containing pLAFR3::avrBs3 (Xcc306DpthA1-4:avrBs3) or Xcc306DpthA1-4 containing pLAFR3 empty vector. A hypersensitive response after 3 days was apparent on the bottom right side of the midrib in which ProBs3 14EBE :avrGf1 was infiltrated prior to infiltration with Xcc306DpthA1-4:avrBs3. Representative data of three experiments are shown.
Fig. 5 Functional analysis of 14 individual effector binding elements (EBEs) that are present in an engineered Bs3 promoter derivative using a set of different transcription activator-like effectors (TALEs) from Xanthomonas citri. (A) Each of the 14 distinct EBEs (EBE X) that are tandemly arranged in ProBs314EBE were cloned individually into T-DNA constructs of the Bs3 wild-type promoter that contains an AvrBs3 binding site (EBE AvrBs3). These distinct Bs3 promoter derivatives were transcriptionally fused to a uidA reporter gene. Blue staining of leaves caused by expression of the b-glucuronidase (GUS) reporter provides a proxy for promoter activity. Combination of fully compatible TALE and EBE typically results in leaf discs with a dark blue ring with a lighter blue interior (e.g. AvrBs3 with Bs3 promoter). (B) 35S promoter-driven T-DNA genes encoding the depicted TALEs (listed horizontally) were delivered together with the depicted promoter-reporter constructs (listed vertically) into Nicotiana benthamiana leaves using Agrobacterium tumefaciens-mediated transient expression. Delivery of a vector that does not contain a TALE gene together with the promoter-reporter construct (control) was used to test whether the observed promoter activities were TALE dependent. At 36 h post-infiltration, the leaves were stained to visualize reporter activity. Leaf discs that are highlighted with a red circle are combinations of PthA1-4 with promoter-reporter constructs that contain the matching EBE. (C) Alignment of predicted EBEs for TALEs that show cross-reactivity. (D) Alignment of AvrBs3 and its predicted EBE in the Bs3 promoter. RVDs (repeat variable diresidue) of pthA and pthA4 have preferences to Bs3 promoter EBE.
Fig. 6 In planta growth of Xanthomonas citri 306 (Xcc306) on transfection with ProBs3 1EBE :avrGf1 and ProBs3 14EBE :avrGf1. (A) Grapefruit leaves were infiltrated with Agrobacterium bacterial suspensions carrying ProBs3 1EBE :avrGf1 [5 3 10 8 colony-forming units (cfu)/mL]. Five hours later, the infiltrated areas were infiltrated with bacterial suspensions (5 3 10 7 cfu/mL) of Xcc306DpthA1-4:avrBs3. Expression of AvrGf1 by AvrBs3 activation on ProBs3 1EBE leads to a hypersensitive reaction, reducing the growth of Xcc306 at 5 days after infection onwards. Experimental controls were Agrobacterium carrying empty vector with Xcc306DpthA1-4:avrBs3; Agrobacterium with and without ProBs3 1EBE :avrGf1 infiltrated with Xcc306DpthA1-4 did not reduce the population. (B) Similarly, grapefruit leaves were infiltrated with an Agrobacterium bacterial suspension carrying ProBs3 14EBE :avrGf1 (5 3 10 8 cfu/mL). Five hours later, the infiltrated areas were infiltrated with bacterial suspensions (5 3 10 7 cfu/mL) of Xcc306DpthA1-4:pthA4. The expression of AvrGf1 by PthA4 activation on ProBs3 14EBE leads to a hypersensitive reaction, reducing the growth of Xcc306 at 5 days after infection onwards. Experimental controls were Agrobacterium carrying empty vector with Xcc306DpthA1-4:pthA4; Agrobacterium with and without ProBs3 1EBE :avrGf1 infiltrated with Xcc306DpthA1-4 did not reduce the population. Data represent the mean 6 standard error (SE) of three experimental replicates.
An engineered promoter driving expression of a microbial avirulence gene confers recognition of TAL effectors and reduces growth of diverse Xanthomonas strains in citrus: X. citri TALE- EBE mediated Citrus Resistance
  • Article
  • Full-text available

June 2016

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233 Reads

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18 Citations

Molecular Plant Pathology

Molecular Plant Pathology

Deepak Shantharaj

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Patrick Römer

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Jose F. L. Figueiredo

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[...]

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Xanthomonas citri subsp. citri (X. citri), causal agent of citrus canker, uses Transcription Activator-Like Effectors (TALEs) as major pathogenicity factors. TALEs, which are delivered into plant cells through the type III secretion system (T3SS), interact with Effector Binding Elements (EBEs) in host genomes to activate expression of downstream susceptibility genes to promote disease. Predictably, TALEs bind EBEs in host promoters via known combinations of TALE amino acids to DNA bases known as the TALE code. We introduced 14 EBEs, matching to distinct X. citri TALEs, into the promoter of the pepper Bs3 gene (ProBs31EBE ) and fused this engineered promoter with multiple EBEs (ProBs314EBE ) to either the GUS reporter gene or the coding sequence (cds) of the pepper gene, Bs3. TALE induced expression of the Bs3 cds in citrus leaves resulted in no visible HR. Therefore, we utilized a different approach in which ProBs31EBE and ProBs314EBE were fused to the Xanthomonas gene, avrGf1, which encodes a bacterial effector that elicits a hypersensitive response (HR) in grapefruit and sweet orange. We demonstrate in transient assays that activation of ProBs314EBE by X. citri TALEs is T3SS dependent and that expression of AvrGf1 triggers HR and correlates with reduced bacterial growth. We further demonstrated that all tested virulent X. citri strains from diverse geographic locations activated ProBs314EBE . TALEs are essential for virulence of X. citri strains and, because the engineered promoter traps are activated by multiple TALEs, this concept has potential to confer broad-spectrum, durable resistance to citrus canker in stably transformed plants. This article is protected by copyright. All rights reserved.

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Fig. 2. Relationship between disease severity and weekly application rates of acibenzolar-S-methyl in experiment 5 (fall 2009) at Wimauma, FL.  
Effect of Application Frequency and Reduced Rates of Acibenzolar-S-Methyl on the Field Efficacy of Induced Resistance Against Bacterial Spot on Tomato

February 2012

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414 Reads

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78 Citations

Plant Disease

Acibenzolar-S-methyl (ASM), a plant activator known to induce systemic acquired resistance, has demonstrated an ability to manage a number of plant diseases, including bacterial spot on tomato caused by four distinct Xanthomonas spp. The aim of this study was to evaluate application rate and frequency of ASM in order to optimize field efficacy against bacterial spot in Florida, while minimizing its impact on marketable yields. ASM was applied biweekly (once every 2 weeks) as a foliar spray at a constant concentration of 12.9, 64.5, and 129 μM throughout four field experiments during 2007-08. A standard copper program and an untreated control were also included. Overall, biweekly applications of ASM did not significantly reduce disease development or the final disease severity of bacterial spot compared with the copper-mancozeb standard or the untreated control. Only one experiment showed a significant reduction in the final disease severity on plants treated with ASM at 129 μM compared with the untreated control. Three additional field trials conducted during 2009-10 to evaluate the effects of weekly and biweekly applications of ASM at concentrations of 30.3 to 200 μM found that weekly applications provided significantly better disease control than biweekly applications. The tomato yields were not statistically improved with the use of ASM relative to the untreated control and standard copper program. Weekly ASM applications at rates as low as 75 μM (equivalent to 1.58 g a.i./ha in 100 liters of water or 0.21 oz. a.i./acre in 100 gallons of water) to 200 μM (equivalent to 4.20 g a.i./ha in 100 liters of water or 0.56 oz. a.i./acre in 100 gallons of water) were statistically equivalent in managing bacterial spot of tomato without significantly reducing yield compared with the untreated control.



Mutational analysis of type III effector genes from Xanthomonas citri subsp. citri

July 2011

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36 Reads

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9 Citations

European Journal of Plant Pathology

Xanthomonas citri subsp. citri, the causal agent of citrus canker, relies extensively on a type III secretion system for infection by delivering type III effectors into host cells. In the genus Xanthomonas, two major regulators, HrpG and HrpX, are involved in the expression of genes encoding the type III secretion system. Twenty-three candidate type III effectors were identified as targets for analysis. The involvement in pathogenicity of 20 candidate effector genes in X. citri strain 306 (Xcc-306) was investigated using site-directed mutagenesis. Pathogenicity assays in grapefruit of 19 genes using site-directed mutagenesis revealed that none of the mutants demonstrated to have reduced ability to cause canker disease. A mutation in the TAL effector pthA4 – resulted in loss of hypertrophy although no changes were observed in bacterial growth in leaves. Mutations in hrpG, hrpX, or hrpA genes displayed a complete loss of pathogenicity. Moreover, all mutants maintained the ability to trigger a hypersensitive response (HR) in non-host tomato. In contrast to previous studies, hrpG – , hrpX – and hrpA – mutants also retained the ability to elicit an HR in tomato, indicating the presence of an Hrp independent elicitor in Xcc-306.


Agrobacterium-mediated transient expression in citrus leaves: A rapid tool for gene expression and functional gene assay

March 2011

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131 Reads

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38 Citations

Plant Cell Reports

In this study, we present a method for transient expression of the type III effector AvrGf1 from Xanthomonas citri subsp. citri strain A(w) in grapefruit leaves (Citrus paradisi) via Agrobacterium tumefaciens. The coding sequence of avrGf1 was placed under the control of the constitutive CaMV 35S promoter in the binary vectors pGWB2 and pGWB5. Infiltration of grapefruit leaves with A. tumefaciens carrying these constructs triggered a hypersensitive response (HR) in grapefruit 4 days after inoculation. When transiently expressed in grapefruit leaves, two mutants, AvrGf1ΔN116 and AvrGf1ΔC83, failed to induce an HR. Moreover, using bioinformatics tools, a chloroplast transit signal was predicted at the N terminus of AvrGf1. We demonstrated chloroplast localization by using an AvrGf1::GFP fusion protein, where confocal images revealed that GFP fluorescence was accumulating in the stomatal cells that are abundant in chloroplasts. Transient expression in citrus has the potential for aiding in the development of new disease defense strategies in citrus.


Citations (4)


... Additionally, a potent transgenic approach to managing several xanthomonads has been devised through the development of "designer" pathogen-inducible synthetic constructs. An elicitor such as an avr gene, or a cognate R gene, is expressed under the control of an engineered promoter containing multiple effector binding elements (EBEs) that are targeted by different transcription activator-like effectors (TALEs); infection by bacteria containing the corresponding TALEs activates ETI and confers resistance (80,166,170,172). Similarly, guard NLRs such as ZAR1, which can indirectly recognize the 12 activity of multiple effectors via association with different effector-targeted kinases or analogous decoys, may also be exploited for multiplexed resistance (82,207). ...

Reference:

Future of Bacterial Disease Management in Crop Production
An engineered promoter driving expression of a microbial avirulence gene confers recognition of TAL effectors and reduces growth of diverse Xanthomonas strains in citrus: X. citri TALE- EBE mediated Citrus Resistance
Molecular Plant Pathology

Molecular Plant Pathology

... AKJ12_01945 is a secreted protein homologous to XAC2370, an endopeptidase that contains a plant inducible promoter (PIP)-box suggesting its role as a hrp regulon candidate. In addition, mutation in this gene induces hypersensitive response (HR) in grapefruit and tomato [44]. AKJ12_04530 is homologous to an outer membrane protein required for virulence during infection and is involved in copper homeostasis and hrp gene expression in Xanthomonas [45]. ...

Mutational analysis of type III effector genes from Xanthomonas citri subsp. citri
  • Citing Article
  • July 2011

European Journal of Plant Pathology

... Developing new types of CBACs or mixing them with other fungicides provides an effective way to control plant diseases caused by copper-resistant strains. Copper used with EBDCs (Ethylene bis-dithiocarbamates) can provide control of bacterial speck and spot diseases, even when copper-tolerant populations are present [112][113][114]. Recent studies have demonstrated that advanced copper composites and nano-magnesium oxide materials are effective against copper-tolerant Xanthomonas spp., increasing the control of bacterial spot in tomato under field conditions [115][116][117]. ...

Effect of Application Frequency and Reduced Rates of Acibenzolar-S-Methyl on the Field Efficacy of Induced Resistance Against Bacterial Spot on Tomato

Plant Disease

... The inhibition of FOM fungal growth by transgenic melons agrees with what observed by Bezirganoglu et al. (2013) and in many other transgenic plants such as tobacco (Carstens et al., 2003), rice (Kumar et al., 2003;Coca et al., 2004Coca et al., , 2006, peanut (Chye et al., 2005), finger millet (Latha et al., 2005), oilseed rape (Melander et al., 2006), pearl millet (Girgi et al., 2006), Indian mustard (Mondal et al., 2007), citrus (Figueiredo et al., 2011), avocado (Chaparro-Pulido et al., 2014 and salvia (Figlan and Makunga, 2017). Similar to previous studies, it seems that the degree of disease resistance directly correlated to the protein expression levels of the transgenes and number of genes responding to the disease (Esfahani et al., 2010). ...

Agrobacterium-mediated transient expression in citrus leaves: A rapid tool for gene expression and functional gene assay
  • Citing Article
  • March 2011

Plant Cell Reports