João Miguel de Matos Nogueira's research while affiliated with University of São Paulo and other places

Increasing habitat modification and species loss demand consistent efforts to describe and understand biodiversity patterns. The BIOTA/FAPESP Program was created in this context and it has been a successful initiative to promote studies on biodiversity and conservation in Brazil. The BIOTA/Araçá is an interdisciplinary project that provided a detailed evaluation of the biodiversity of Araçá Bay, a coastal seascape located on the North coast of the state of São Paulo, Southeast Brazil. The bay encompasses multiple habitats, such as beaches, mangroves, rocky shores, and a tidal flat, and provides important ecosystem services. Unfortunately, the bay is the subject of complex social-environmental conflicts that oppose economic, social, and environmental demands (i.e., the expansion of neighboring harbor activities vs. small-scale artisanal fisheries and protection of biodiversity). The present study presents a survey of the benthic species occurring in the different habitats of Araçá Bay, including data obtained during the BIOTA/Araçá project and previous assessments of the area. The benthic species play an important role in marine environments and studying the diversity of these organisms that live associated with the bottom is indispensable for comprehending the environment’s functioning. The macrofauna, meiofauna, and microorganisms associated with soft and hard bottom were listed, and additional information, such as the habitat and geographical distribution, were provided for each species. The checklist includes 826 species, almost 70% recorded during the BIOTA/Araçá project. The most speciose taxa were the annelids (225 spp.), mollusks (194 spp.), and crustaceans (177 spp.). Seven benthic species are endemic to Araçá Bay, 14 are considered threatened, and seven are economically exploited. Furthermore, the bay is the type locality of many taxa, and 11 new benthic species were described based on specimens sampled during the project. This project shows the importance of Araçá Bay as a unique biologically rich environment and highlights the need for conservation efforts in light of the current threats.

Five new species of Terebellides are described from coastal and deep waters of Papua New Guinea, using both morphology and molecular tools (for four species). Terebellides elenae n. sp. is characterized by the absence of both a glandular lateral region on TC3 and papillae on margins of the branchial lamellae and by the presence of partially fused branchial lobes with conspicuous fifth lobe and dorsal rounded projections until TC6. Terebellides fauchaldi n. sp. has a very large glandular lateral region on the third thoracic chaetiger (TC3), a fifth branchial lobe and partially fused branchial lobes, and conspicuous dorsal rounded projections on TC2–6. Terebellides madeep n. sp. is characterized by a thin glandular region on TC3 and by four free branchial lobes. Terebellides oculata n. sp. is one of the only two species in the world to have eyespots. Finally, T. papillosa n. sp. has geniculate chaetae on TC6 and TC7 and bears a large number of papillae. A majority-rule consensus tree using the 16S gene and an identification key for all Terebellides species described from the Central Indo-Pacific region are provided.

This paper is the conclusion of the “Spaghetti Project” aiming to revise French species of Terebellidae sensu lato (s.l.) belonging to the fi ve families: Polycirridae, Telothelepodidae, Terebellidae sensu stricto (s.s.), Thelepodidae and Trichobranchidae. During this project, 41 species were observed, 31 of them new for science: eight species of Polycirridae, eleven species of Terebellidae s.s., three species of Thelepodidae and nine species of Trichobranchidae. We provide a comprehensive key for all European species of terebellids with a focus on the important diagnostic characters for each family. Finally, we discuss issues on taxonomy, biodiversity and cryptic and pseudo-cryptic species of polychaetes in European waters, based on results obtained during this project.

We report herein three epibiotic associations between peritrich ciliate protozoans and polychaete worms, as observed in Tamilnadu, southeastern coast of India. Epibiont ciliates Epistylis sp.1 were found all over the integument of individuals of the terebellid polychaete Terebella sp., collected from Vellar estuary. Epistylis sp.2 ciliates were observed attached to Namalycastis abiuma polychaetes, on both sides of parapodia. Cothurnia sp. ciliates were found on anterior most paleae and hooks of Sabellaria sp. polychaetes, both latter associations from material from the Uppanar estuary. Those epibiont/basibiont associations are all new to science and discussed herein, together with a review on the previous reports of epibiont ciliate protozoans in Indian waters.

[This corrects the article DOI: 10.1371/journal.pone.0250472.].

We compiled the records for the genus Salvatoria from Brazilian coastal and oceanic habitats, collected by several projects along the years. Here we present 12 species, eight of which already reported-S. breviarticulata comb. nov., S. clavata, S. euritmica, S. heterocirra, S. limbata, S. longiarticulata comb. nov., S. neapolitana and S. cf. nitidula-with comments regarding the confidence of some of these records. We also describe three new species, S. marielleae n. sp. and Salvatoria nitiduloides n. sp., based on material from Fernando de Noronha and Trindade islands, off the Northeastern Brazilian coast, and S. ypsiloides n. sp., from Fernando de Noronha and also, Campos Basin, off Southeastern Brazilian coast, in depths down to 970 m. Finally, we report a probably undescribed species, Salvatoria sp., represented by only one specimen lacking median antenna, preventing us to proceed with further identification properly. A dichotomous identification key and a comparative table with morphological data of specimens belonging to these species are also provided.

Sabellida Levinsen, 1883 is a large morphologically uniform group of sedentary annelids commonly known as fanworms. These annelids live in tubes made either of calcareous carbonate or mucus with agglutinated sediment. They share the presence of an anterior crown consisting of radioles and the division of the body into thorax and abdomen marked by a chaetal and fecal groove inversion. This study synthesises the current state of knowledge about the diversity of fanworms in the broad sense (morphological, ecological, species richness), the species occurrences in the different biogeographic regions, highlights latest surveys, provides guidelines for identification of members of each group, and describe novel methodologies for species delimitation. As some members of this group are well-known introduced pests, we address information about these species and their current invasive status. In addition, an overview of the current evolutionary hypothesis and history of the classification of members of Sabellida is presented. The main aim of this review is to highlight the knowledge gaps to stimulate research in those directions.