Jane Melville's research while affiliated with Monash University (Australia) and other places

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Publications (93)


Dragons in the tropics – Phylogeography and speciation in Diporiphora lizards and common geographic breaks in co-distributed taxa
  • Article

May 2024

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35 Reads

Molecular Phylogenetics and Evolution

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Jane Melville

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Systematic assessment of the brown tree frog (Anura: Pelodryadidae: Litoria ewingii) reveals two endemic species in South Australia

February 2024

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83 Reads

Zootaxa

TOM PARKIN

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JESSICA ELLIOTT-TATE

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[...]

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STEPHEN C. DONNELLAN

The brown tree frog (Litoria ewingii) is a relatively widespread, commonly encountered pelodryadid frog from south-eastern Australia, known for its characteristic whistling call. The distribution of Litoria ewingii spans over more than 350,000 km2, encompassing a range of moist temperate habitats, and is fragmented by well-known biogeographic barriers. A preliminary analysis of mitochondrial DNA sequences revealed evidence for deep phylogenetic structure between some of these fragmented populations. In this study, we sought to re-evaluate the systematics and taxonomy of Litoria ewingii sensu lato by analysing variation in nuclear and mitochondrial DNA, adult morphology and male advertisement calls throughout the species’ range. Our analyses reveal two additional, deeply divergent and allopatric lineages in South Australia. We herein re-describe Litoria ewingii from Tasmania, southern New South Wales, Victoria and south-eastern South Australia, resurrect the name Litoria calliscelis for a species occurring in the Mount Lofty Ranges and Fleurieu Peninsula in South Australia, and describe a new species, Litoria sibilus sp. nov., endemic to Kangaroo Island.


Three new species of north-eastern Australian earless dragons (Agamidae: Tympanocryptis)

August 2023

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53 Reads

Australian Journal of Taxonomy

Earless dragons (Tympanocryptis spp.) are found in most open dry environments across the Australian continent, with the 23 currently described species inhabiting a variety of ecological niches, from stony desert to tropical woodland or cracking clay savannahs. Recent species delimitation research using genetics (mtDNA, nDNA, SNPs) and geometric morphometric analyses of CT scans identified three genetic lineages of earless dragons that are yet to be described in Queensland, supporting the need for a taxonomic revision. Focussing on this geographic region, we use supporting evidence from a mitochondrial DNA (ND2) phylogeny, along with external morphological assessment, to undertake a taxonomic revision of Queensland earless dragons. Based on these data, we describe three new species of Tympanocryptis from the cracking clay grasslands of the Darling Riverine Basin, the Queensland Central Highlands, and the stony open eucalypt woodlands on the Einasleigh Uplands. The revision of these north-eastern Australian earless dragon species provides further taxonomic clarity within the Tympanocryptis genus.



Animal population decline and recovery after severe fire: Relating ecological and life history traits with expert estimates of population impacts from the Australian 2019-20 megafires

May 2023

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271 Reads

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6 Citations

Biological Conservation

Catastrophic megafires can increase extinction risks; identifying species priorities for management and policy support is critical for preparing and responding to future fires. However, empirical data on population loss and recovery post-fire, especially megafire, are limited and taxonomically biased. These gaps could be bridged if species' morphological, behavioural, ecological and life history traits indicated their fire responses. Using expert elicitation that estimated population changes following the 2019–20 Australian megafires for 142 terrestrial and aquatic animal species (from every vertebrate class, one invertebrate group), we examined whether expert estimates of fire-related mortality, mortality in the year post-fire, and recovery trajectories over 10 years/three generations post-fire, were related to species traits. Expert estimates for fire-related mortality were lower for species that could potentially flee or shelter from fire, and that associated with fire-prone habitats. Post-fire mortality estimates were linked to diet, diet specialisation, home range size, and susceptibility to introduced herbivores that damage or compete for resources. Longer-term population recovery estimates were linked to diet/habitat specialisation, susceptibility to introduced species; species with slower life histories and shorter subadult dispersal distances also had lower recovery estimates. Across animal groups, experts estimated that recovery was poorest for species with pre-fire population decline and more threatened conservation status. Sustained management is likely needed to recover species with habitat and diet specialisations, slower life histories, pre-existing declines and threatened conservation statuses. This study shows that traits could help inform management priorities before and after future megafires, but further empirical data on animal fire response is essential.


Assessing the impact of fire on spiders through a global comparative analysis
  • Article
  • Full-text available

April 2023

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294 Reads

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1 Citation

Proceedings of the Royal Society B

Proceedings of the Royal Society B

In many regions fire regimes are changing due to anthropogenic factors. Understanding the responses of species to fire can help to develop predictive models and inform fire management decisions. Spiders are a diverse and ubiquitous group and can offer important insights into the impacts of fire on invertebrates and whether these depend on environmental factors, phylogenetic history or functional traits. We conducted phylogenetic comparative analyses of data from studies investigating the impacts of fire on spiders. We investigated whether fire affects spider abundance or presence and whether ecologically relevant traits or site-specific factors influence species’ responses to fire. Although difficult to make broad generalizations about the impacts of fire due to variation in site- and fire-specific factors, we find evidence that short fire intervals may be a threat to some spiders, and that fire affects abundance and species compositions in forests relative to other vegetation types. Orb and sheet web weavers were also more likely to be absent after fire than ambush hunters, ground hunters and other hunters suggesting functional traits may affect responses. Finally, we show that analyses of published data can be used to detect broad-scale patterns and provide an alternative to traditional meta-analytical approaches.

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Ant diversity in relation to time since fire in a mallee landscape of South‐Eastern Australia

April 2023

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32 Reads

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1 Citation

Austral Ecology

Fire is a dominant process shaping the Australian landscape and in many regions the frequency and severity of wildfires are predicted to increase under climate change. The primary impact of fire on fauna is typically indirect through habitat change. In particular, in mesic forests different animal species are favoured at different times since fire as habitat complexity increases with vegetation recovery. However, this will not necessarily be the case in habitats with low complexity such as many of those occurring in arid and semi‐arid regions. Here, we investigate the relationship between fire history and ant diversity and composition in semi‐arid mallee of south‐eastern Australia. We surveyed ants at 11 sites in the Little Desert National Park and nearby private land that last burnt 0.5, 6 or 40 years ago. We found no relationship between time since fire and either ant diversity or composition, and this can be explained by a lack of relationship between time since fire and vegetation cover. Our findings contrast with those for mallee bird species, which show clear successional patterns following fire, but are likely to be typical of ground‐foraging fauna that lack specialized habitat requirements.


The impacts of the 2019-20 wildfires on Australia's lizards and snakes

February 2023

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134 Reads

Context and challenges • Australia harbours a disproportionate share of global squamate diversity (lizards and snakes). The areas impacted by the 2019-20 wildfires comprise diverse squamate communities that include many threatened and narrowly distributed species. • The impact of fire on most Australian squamates is not well understood. Reptile populations are monitored less than any other vertebrate group, and many species have unresolved taxonomy. Main findings • Very few studies have considered the effects of fire on squamate mortality or how attributes of fire regimes affect squamates in areas impacted by the 2019-20 wildfires. • The habitat of 445 squamate species from 11 families was within the footprint of the 2019-20 wildfires, representing nearly 40% of Australia's described species. This included 29 species listed as threatened nationally or globally. • One species, Kate's leaf-tailed gecko (Saltuarius kateae), had its entire known (highly restricted) range burnt, but post-fire sampling indicated that the species persists and is breeding in the firegrounds. • Species in most need of monitoring and conservation following the 2019-20 wildfires are narrowly distributed species with moderate-to-high fire overlap and traits that make them vulnerable to fire and post-fire conditions. • Assessments of within-species diversity across 14 priority species identified 19 evolutionarily significant units and more than 18 management units. • Assessment of the on-ground effects of the 2019-20 wildfires is hampered by a lack of long-term monitoring and investment. There is an urgent need to break a cycle of chronic under-funding of reptile monitoring and conservation in Australia, particularly given the increasing prevalence of large, high severity wildfires.



Location of B. duperreyi populations SNP genotyped in this study from across the range of the species in south‐eastern Australia and including the location of recognized biogeographic barriers. Color scheme is consistent with other figures and OTUs as described in Figure 2. Underlying map generated using ArcGIS 10.5.1 (http://www.esri.com) and data from the Digital Elevation Model (Geoscience Australia) made available under Creative Commons Attribution 3.0 Australia (https://creativecommons.org/licenses/by/3.0/au/legalcode, last accessed 9‐Jul‐20)
Genetic similarity between individuals using principal coordinates analysis of 12.451 SNP (in group analysis only and recalcitrant individual or population does not present here). Five diagnosable OTUs are defined. Color scheme is consistent with Figures 1 and 3. Refer to text for justification of putative species. Axes not to scale
Phylogenetic analyses of Dartseq SNPs with SVDquartets (left) compared to a published phylogeny of two partial mitochondrial genes (ND2 and ND4) (not to scale) (see Dubey & Shine, 2010). Bootstrap support values are reported for all nodes. Branch lengths are not meaningful for the SVDquartets tree
The distribution of Bassiana duperreyi in relation to the intensity and extent of the Australian megafire event, which occurred from 1st July 2019 to 11th February 2020. Refer to Supporting Information Table S1 and Figures 1 and 3 for the corresponding population details. The fire intensity and distribution data were obtained from Godfree et al. (2021). The name of the each megafire bracketed value after each megafire is the fire area in millions of hectares. Underlying map generated using ArcGIS 10.5.1 (http://www.esri.com) and data from the Digital Elevation Model (Geoscience Australia) made available under Creative Commons Attribution 3.0 Australia (https://creativecommons.org/licenses/by/3.0/au/legalcode, last accessed 9‐Jul‐20)
Lineage diversity within a widespread endemic Australian skink to better inform conservation in response to regional‐scale disturbance

March 2022

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98 Reads

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4 Citations

Much attention is paid in conservation planning to the concept of a species, to ensure comparability across studies and regions when classifying taxa against criteria of endangerment and setting priorities for action. However, various jurisdictions now allow taxonomic ranks below the level of species and nontaxonomic intraspecific divisions to be factored into conservation planning-subspecies, key populations, evolutionarily significant units, or designatable units. Understanding patterns of genetic diversity and its distribution across the landscape is a key component in the identification of species boundaries and determination of substantial geographic structure within species. A total of 12,532 reliable polymorphic SNP loci were generated from 63 populations (286 individuals) covering the distribution of the Australian eastern three-lined skink, Bassiana duperreyi, to assess genetic population structure in the form of diagnosable lineages and their distribution across the landscape, with particular reference to the recent catastrophic bushfires of eastern Australia. Five well-supported diagnosable operational taxonomic units (OTUs) existed within B. duperreyi. Low levels of divergence of B. duperreyi between mainland Australia and Tasmania (no fixed allelic differences) support the notion of episodic exchange of alleles across Bass Strait (ca 60 m, 25 Kya) during periods of low sea level during the Upper Pleistocene rather than the much longer period of isolation (1.7 My) indicated by earlier studies using mitochondrial sequence variation. Our study provides foundational work for the detailed taxonomic re-evaluation of this species complex and the need for biodiversity assessment to include an examination of cryptic species and/or cryptic diversity below the level of species. Such information on lineage diversity within species and its distribution in the context of disturbance at a regional scale can be factored into conservation planning regardless of whether a decision is made to formally diagnose new species taxonomically and nomenclaturally.


Citations (72)


... For instance, in African savannas and grasslands, and other fire-prone ecosystems like Cerrado, the abundance of large herbivores was positively impacted by fires, www.nature.com/scientificreports/ although responses vary widely among taxa depending on species life-history traits, habitat requirements, and refuges provided by unburned habitats (e.g., 7,8,33 ). However, other species occurring in areas surrounding TES, namely Aotus azarae, Cuniculus paca, Tamandua tetradactyla, Euphractus sexcinctus, and Tolypeutes matacus (recorded by interviews 28 ), were not detected in our study. ...

Reference:

Forest type modulates mammalian responses to megafires
Animal population decline and recovery after severe fire: Relating ecological and life history traits with expert estimates of population impacts from the Australian 2019-20 megafires
  • Citing Article
  • May 2023

Biological Conservation

... Gnaphosidae species prefer open and warm habitats and have also been found in large numbers in dry and open habitats on the islands of the south-western Finnish archipelago [65]. A decrease in the number of spider species and an increase in the number of hunting species after a fire have also been described in a mountain mixed deciduous-coniferous forest in China [66] and, obviously, is a general pattern for ground-dwelling spider assemblages in disturbed territories [67]. ...

Assessing the impact of fire on spiders through a global comparative analysis
Proceedings of the Royal Society B

Proceedings of the Royal Society B

... Studies on fire's impacts have traditionally focused on plants but during the last decade there is increasing research exploring fire's impact on animals (Engstrom 2010;Beale et al., 2018;Nimmo et al., 2018Nimmo et al., , 2021Pausas and Parr 2018;Jolly et al., 2022) and especially on insects (New 2014). Regarding ants, most studies of fire effects analysed taxonomic richness and abundance (Farji-Brener et al., 2002;Parr et al., 2004;Moretti et al., 2004;Arnan et al., 2006;Sackmann and Farji-Brener 2006;Kwon 2015;Anjos et al., 2015Anjos et al., , 2017Vasconcelos et al., 2017;Adams et al., 2018;Rosa et al., 2021;Bonoan and McCarthy 2022;Staff et al., 2023), sometimes combined with functional diversity Bishop et al., 2021;Vidal-Cordero et al., 2022, 2023, or focusing on some after-fire specific ecological responses such as ant-seed dispersal Beaumont et al., 2013Beaumont et al., , 2018, female production (Caut et al., 2014), diet shifts (Lázaro-González et al., 2013), or cavity use by arboreal ants (Arruda et al., 2020). Finally, recent behavioural studies show how fire can have an effect on ant behaviour, specifically relationships of dominance between species (Sensenig et al., 2017;Tavella and Cagnolo, 2018). ...

Ant diversity in relation to time since fire in a mallee landscape of South‐Eastern Australia
  • Citing Article
  • April 2023

Austral Ecology

... I n t h i s s t u d y, w e a n a l y s e t h e p r o x i m a t e determinants of bite force across 56 species of the family Scincidae. This group of lizards was chosen as it is the most species-rich lizard family characterized by an exceptional morphological and ecological diversity (Chapple et al., 2021;Uetz et al., 2022). Skinks show a great diversity in diet ranging from insectivorous to herbivorous and durophagous species. ...

Conservation status of the world's skinks (Scincidae): Taxonomic and geographic patterns in extinction risk
  • Citing Article
  • May 2021

... Although some degree of morphological variation was evident within the glossy grass skink, there were no consistent morphological differences among the seven genetic lineages in the species. Interestingly, the location of the seven genetic lineages within the glossy grass skink were largely concordant with the recognised biogeographic boundaries in southeastern Australia (Chapple et al. 2005(Chapple et al. , 2011a(Chapple et al. , 2011bBryant and Krosch 2016;Dissanayake et al. 2022). Assuming 2% sequence divergence per million years, as used in other Australian skinks (Chapple et al. 2005;Haines et al. 2014), this would indicate a divergence time of between 0.5 million years ago and 2.6 million years, ago during the Pliocene-Pleistocene boundary (Chapple et al. 2005;Dissanayake et al. 2022;Senior et al. 2022). ...

Lineage diversity within a widespread endemic Australian skink to better inform conservation in response to regional‐scale disturbance
Ecology and Evolution

Ecology and Evolution

... Following a 3-year drought, extensive fires began along the eastern seaboard of Australia in late 2019, burning a 97,000 km 2 area (Adams et al. 2020;Ward et al. 2020). A total of 225 species of vertebrate had their ranges overlap the burn area by over 10%, with at least 76 species having over half of their known distribution burnt (Legge et al. 2022b). Species most heavily impacted by fire were habitat specialists (Legge et al. 2022b), such as those with low dispersal capabilities and restricted to rock outcrops or bogs (Dubey and Shine 2010;Senior et al. 2021;Santos et al. 2022). ...

The conservation impacts of ecological disturbance: Time‐bound estimates of population loss and recovery for fauna affected by the 2019–2020 Australian megafires

Global Ecology and Biogeography

... Sequences labelled "Plasmodium sp." and "Plasmodium mackerrasae" available in GenBank are known from the Australian skink Egernia stokesii (Gray 1845). Whilst Martinsen et al. (2008) labelled four sequences obtained in their study as Plasmodium sp., one of these sequences (EU254531) appeared as Plasmodium mackerrasae later in article by Galen et al. (2018) and another one (EU254574) already with changed generic allocation as Haemocystidium sp. in article by Boysen et al. (2022). However, these sequences did not cluster with lizards' Plasmodium species, but instead within the Haemocystidium clade (Martinsen et al. 2008;Galen et al. 2018). ...

Diversity and phylogenetic relationships of haemosporidian and hemogregarine parasites in Australian lizards
  • Citing Article
  • November 2021

Molecular Phylogenetics and Evolution

... Interestingly, the cytonuclear discordance we see in this study is largely concentrated in the Kimberley and Victoria River regions of the monsoonal tropics, areas suggested to be less climatically suitable for much of the last glacial cycle, rather than the Top End which has been variable but consistently mesic (e.g., Reeves et al. 2013;Potter et al. 2018). Heterogeneity in climatic stability in the Kimberley has been linked to populations contracting and expanding (e.g., Potter et al. 2016Potter et al. , 2018Afonso Silva et al. 2017;Fenker et al. 2021;Jaya et al. 2022) and a foundation for gene flow to occur between populations as they reconnect (e.g., Catullo and Keogh 2014;Eldridge et al. 2014;Kearns et al. 2014;. Range instability has been associated with cytonuclear discordance across many diverse species (e.g., Krosby and Rohwer 2009;Singhal and Moritz 2012;Phuong et al. 2017) and has been associated more broadly with macroevolutionary patterns of introgression (see Singhal et al. 2021). ...

Predictors of Phylogeographic Structure among co-distributed taxa across the complex Australian Monsoonal Tropics
  • Citing Article
  • July 2021

Molecular Ecology

... A threatened species being synonymized under a non-threatened one, or a threatened species arising from a taxonomic split (Garnett & Christidis, 2017;Morrison et al., 2009) can influence prioritization schemes (Meiri et al., 2023). Thus, taxonomic research is vital for conservation efforts and outcomes (Melville et al., 2021;Richardson & Whittaker, 2010). ...

A return-on-investment approach for prioritization of rigorous taxonomic research needed to inform responses to the biodiversity crisis

... These 32 species should be research priorities to ensure that an accurate extinction risk classification can be determined, and effective conservation strategies can be developed where necessary. In line with research by Chapple et al. (2021), we recommend key pieces of information are collected to enable the rapid assessment of species. These should include range size and the number of populations, threats and habitat preferences . ...

Conservation status of the world’s skinks (Scincidae): Taxonomic and geographic patterns in extinction risk
  • Citing Article
  • April 2021

Biological Conservation