Jana Sticht's research while affiliated with Freie Universität Berlin and other places

Publications (42)

Preprint
Full-text available
MHC-II presents antigenic peptides to T helper cells, thus shaping adaptive immune responses. Peptide loading of MHC-II in endosomes is shaped by the susceptibility of the peptide-MHC-II complex to dissociation by the catalyst HLA-DM. For a given MHC-II allotype, experimental data reveal an enormous range of HLA-DM susceptibilities of different pep...
Preprint
Identifying T cell epitopes is essential for studying and potentially tuning immune responses to pathogens. The polymorphic nature of major histocompatibility complex of class II (MHCII)-genes, and the complexity of the antigen processing mechanisms hinders the effective prediction of immunodominant patterns in humans, specially at the population l...
Article
Carbapenem resistance mediated by metallo-β-lactamases (MBL) such as New Delhi metallo-β-lactamase-1 (NDM-1) has become a major factor threatening the efficacy of essential β-lactam antibiotics. Starting from hit fragment dipicolinic acid (DPA), 8-hydroxy- and 8-sulfonamido-quinoline-2-carboxylic acids were developed as inhibitors of NDM-1 with hig...
Article
Full-text available
Presentation of antigenic peptides by major histocompatibility complex class II (MHC-II) proteins determines T helper cell reactivity. The MHC-II genetic locus displays a large degree of allelic polymorphism influencing the peptide repertoire presented by the resulting MHC-II protein allotypes. During antigen processing, the human leukocyte antigen...
Article
Protein-protein interactions often rely on specialized recognition domains, such as WW domains, which bind to specific proline-rich sequences. The specificity of these protein-protein interactions can be increased by tandem repeats, i.e., two WW domains connected by a linker. With a flexible linker, the WW domains can move freely with respect to ea...
Preprint
Full-text available
Intrinsically disordered proteins (IDPs) play a vital role in biological processes that rely on transient molecular compartmentation1. In T cells, the dynamic switching between migration and adhesion mandates a high degree of plasticity in the interplay of adhesion and signaling molecules with the actin cytoskeleton2,3. Here, we show that the N-ter...
Preprint
Full-text available
Protein-protein interactions often rely on specialized recognition domains, such as WW domains, which bind to specific proline-rich sequences. The specificity of these protein-protein interactions can be increased by tandem repeats, i.e. two WW domains connected by a linker. With a flexible linker, the WW domains can move freely with respect to eac...
Article
Full-text available
The repertoire of peptides presented by major histocompatibility complex class I (MHC-I) molecules on the cell surface is tailored by the ER-resident peptide loading complex (PLC), which contains the exchange catalyst tapasin. Tapasin stabilizes MHC-I molecules and promotes the formation of stable peptide-MHC-I (pMHC-I) complexes that serve as T ce...
Article
Full-text available
Type 1 diabetes is an autoimmune disease with rising incidence in high-income countries. Genetic and environmental predisposing factors contribute to the etiology of the disease, although their interaction is not sufficiently understood to allow for preventive action. Strongest known associations with genetic variation map to classical HLA class II...
Article
The major histocompatibility complex (MHC) loci are amongst the most polymorphic regions in the genomes of vertebrates. In the human population, thousands of MHC gene variants (alleles) exist that translate into distinct allotypes equipped with overlapping but unique peptide binding profiles. Understanding the differential structural and dynamic pr...
Article
Full-text available
FGF2 is a tumor cell survival factor that is exported from cells by an ER/Golgi-independent secretory pathway. This unconventional mechanism of protein secretion is based on direct translocation of FGF2 across the plasma membrane. The Na,K-ATPase has previously been shown to play a role in this process, however, the underlying mechanism has remaine...
Preprint
Full-text available
Fibroblast Growth Factor 2 (FGF2) is a tumor cell survival factor that is exported from cells by an unconventional secretory pathway. This process is based on direct translocation of FGF2 across the plasma membrane. FGF2 membrane translocation depends on PI(4,5)P2-induced formation of membrane-inserted FGF2 oligomers followed by extracellular trapp...
Article
The scaffolding protein intersectin 1 plays important roles in clathrin-mediated endocytosis and in the replenishment of release-ready synaptic vesicles (SV). Two splice variants of intersectin's SH3A domain are expressed in the brain, and association of the neuron-specific variant with synapsin I has been shown to enable sustained neurotransmissio...
Article
Full-text available
Based on our recent finding that FBP21 regulates human Brr2 helicase activity involved in the activation of the spliceosomal B-complex, we investigated the structural and dynamic contribution of FBP21 to the interaction. By using NMR spectroscopy, we could show that the 50 C-terminal residues of FBP21 (FBP21326–376), which are sufficient to fully f...
Article
Precursor messenger RNA splicing is mediated by the spliceosome, a large and dynamic molecular machine composed of five small nuclear RNAs and numerous proteins. Many spliceosomal proteins are predicted to be intrinsically disordered or contain large disordered regions, but experimental validation of these predictions is scarce, and the precise fun...
Article
Full-text available
Splicing of eukaryotic pre-mRNA is carried out by the spliceosome, which assembles stepwise on each splicing substrate. This requires the concerted action of snRNPs and non-snRNP accessory proteins, the functions of which are often not well understood. Of special interest are B complex factors that enter the spliceosome prior to catalytic activatio...
Article
Full-text available
Antigen presentation by major histocompatibility complex (MHC) proteins is essential for adaptive immunity. Prior to presentation, peptides need to be generated from proteins that are either produced by the cell’s own translational machinery or that are funneled into the endo-lysosomal vesicular system. The prolonged interaction between a T cell re...
Article
Full-text available
The immune system plays a crucial role in many diseases. Activation or suppression of immunity is often related to clinical outcome. Methods to explore the dynamics of immune responses are important to elucidate their role in conditions characterized by inflammation, such as infectious disease, cancer or auto-immunity. Immuno-PET is a non-invasive...
Article
The β2-integrin lymphocyte function-associated antigen-1 (LFA-1) is needed for T cell receptor (TCR) induced activation of LFA-1 to promote T cell adhesion and interaction with antigen presenting cells (APCs). LFA-1-mediated cell-cell interactions are critical for proper T cell differentiation and proliferation. The Src Kinase-Associated Phosphopro...
Data
Molecular movie illustrating a possible transition pathway from MS3 to the transition state candidate MS1, in which a destabilization of the β1-chain α-helix is followed by flipping out of the αW43 sidechain. The movie was extracted from a WT simulation. The molecular representation was chosen as in Figs. 1e, 3d, 4g. The representative simulations...
Data
Supplementary Figures 1 - 10 and Supplementary Tables 1 - 4
Data
Molecular movie illustrating the intrinsic, partial peptide dissociation pathway in the ground state MS3. The movie was extracted from a βN82A simulation. The molecular representation was chosen as in Figs. 1e, 3d, 4g. The representative simulations are filmed here at a frame rate of 10ns/1sec, and are smoothed with an averaging window of 11ns.
Data
Molecular movie illustrating a possible transition pathway from MS3 to the transition state candidate MS1, in which flipping out of the αW43 sidechain is followed by destabilization of the β1-chain α-helix. The movie was extracted from a βN82A simulation. The molecular representation was chosen as in Figs. 1e, 3d, 4g. The representative simulations...
Article
Full-text available
The presentation of peptide-MHCII complexes (pMHCIIs) for surveillance by T cells is a well-known immunological concept in vertebrates, yet the conformational dynamics of antigen exchange remain elusive. By combining NMR-detected H/D exchange with Markov modelling analysis of an aggregate of 275 microseconds molecular dynamics simulations, we revea...
Article
Full-text available
Classical MHC class II (MHCII) proteins present peptides for CD4+ T-cell surveillance and are by far the most prominent risk factor for a number of autoimmune disorders. To date, many studies have shown that this link between particular MHCII alleles and disease depends on the MHCII's particular ability to bind and present certain peptides in speci...
Article
Full-text available
Stimulation of T cells leads to distinct changes of their adhesive and migratory properties. Signal propagation from activated receptors to integrins depends on scaffolding proteins such as the adhesion and degranulation promoting adaptor protein (ADAP). Here we have comprehensively investigated the phosphotyrosine interactome of ADAP in T cells an...
Article
During the adaptive immune response, MHCII proteins display antigenic peptides on the cell surface of APCs for CD4(+) T cell surveillance. HLA-DM, a nonclassical MHCII protein, acts as a peptide exchange catalyst for MHCII, editing the peptide repertoire. Although they map to the same gene locus, MHCII proteins exhibit a high degree of polymorphism...
Article
Full-text available
HLA-DM mediates the exchange of peptides loaded onto MHCII molecules during antigen presentation by a mechanism that remains unclear and controversial. Here, we investigated the sequence and structural determinants of HLA-DM interaction. Peptides interacting nonoptimally in the P1 pocket exhibited low MHCII binding affinity and kinetic instability...
Article
Class II proteins of the major histocompatibility complex (MHCII) typically present exogenous antigenic peptides to cognate T cell receptors of CD4-T lymphocytes. The exact conformation of peptide-MHCII complexes (pMHCII) can vary depending on the length, register and orientation of the bound peptide. We have recently found the self-peptide CLIP (c...
Article
Full-text available
T-cell recognition of peptides bound to MHC class II (MHCII) molecules is a central event in cell-mediated adaptive immunity. The current paradigm holds that prebound class II-associated invariant chain peptides (CLIP) and all subsequent antigens maintain a canonical orientation in the MHCII binding groove. Here we provide evidence for MHCII-bound...
Article
Multifunctional protein surfaces pose a major challenge for the understanding of an individual protein's contribution to cellular signalling. Deconvolution of network connectivities for individual epitopes by combining site‐specific inhibition with stable isotope labelling of amino acids in cell culture (SILAC)/mass spectrometry provides a powerful...
Article
Full-text available
The tumor maintenance protein Tsg101 has recently gained much attention because of its involvement in endosomal sorting, virus release, cytokinesis, and cancerogenesis. The ubiquitin-E2-like variant (UEV) domain of the protein interacts with proline-rich sequences of target proteins that contain P(S/T)AP amino acid motifs and weakly binds to the ub...
Article
Caged in: The formation of a complex between a peptide ligand and a major histocompatibility complex (MHC) class II protein is detected by a (129)Xe biosensor. Cryptophane molecules that trap Xe atoms are modified with a hemagglutinin (HA) peptide, which binds to the MHC protein. The interaction can be monitored by an NMR chemical shift change of c...
Article
Die Komplexbildung zwischen einem Peptidliganden und einem MHC-Klasse-II-Protein wird mithilfe eines 129Xe-Biosensors nachgewiesen. Cryptophanmoleküle, die Xe-Atome einfangen, werden mit einem Hämagglutinin(HA)-Peptid modifiziert, das an das MHC-Protein bindet. Die Wechselwirkung kann anhand einer Veränderung der chemischen Verschiebung von Käfig-H...
Article
Full-text available
Morphogenesis of infectious HIV-1 involves budding of immature virions followed by proteolytic disassembly of the Gag protein shell and subsequent assembly of processed capsid proteins (CA) into the mature HIV-1 core. The dimeric interface between C-terminal domains of CA (C-CA) has been shown to be important for both immature and mature assemblies...
Article
Low-affinity protein-protein interactions (PPI) between domains of modular proteins and short, solvent-exposed peptide sequences within their binding partners play an essential role in intracellular signaling. An important class of PPIs comprises proline-rich motifs (PRM) that are specifically recognized by PRM-binding domains (PRD). Aromatic side...
Article
Full-text available
Formation of infectious HIV-1 involves assembly of Gag polyproteins into immature particles and subsequent assembly of mature capsids after proteolytic disassembly of the Gag shell. We report a 12-mer peptide, capsid assembly inhibitor (CAI), that binds the capsid (CA) domain of Gag and inhibits assembly of immature- and mature-like capsid particle...
Article
Full-text available
Immature HIV particles bud from infected cells after assembly at the cytoplasmic side of cellular membranes. This assembly is driven by interactions between Gag polyproteins. Mature particles, each containing a characteristic conical core, are later generated by proteolytic maturation of Gag in the virion. The C-terminal domain of the HIV-1 capsid...

Citations

... Next is 2,6-dipicolinic acid (DPA, 3) 27 , which demonstrates potency in micromolar against three major MBLs. In addition, the ongoing efforts in this eld were emphasized by the recently reported indole-2-carboxylates (4) 28 , quinoline-2-carboxylates (5) 29 and sulfonamides (6, 7) 30,31 as promising MBLIs. ...
... Our study revealed that HLA DR + + monocyte AC may be the key immune cell trait mediating the causal relationship between the level of Phosphatidylcholine (16:1_18:1) and female infertility. HLA-DR is an MHC-II class molecule expressed on B lymphocytes, monocytes, macrophages, activated T-lymphocytes, activated NK-lymphocytes, and human progenitor cells [22]. Research has shown that HLA-DR expression is linked to both successful IVF implantations, and the mechanism underlying this relationship may be the down-regulation of HLA-DRs, which re ects the absence of antigen-presenting cells in the endometrium and causes infertility [23,24]. ...
... This tryptophan residue and other aromatic positions conserved on the surface of the β-sheet are involved in establishing interactions, converting this surface into the binding platform for peptide recognition 51,52 . Several studies have analyzed the binding selectivity of WW domains, classifying them in different groups depending on the type of peptide motif recognized 53 ; in most cases, WW domains show some promiscuity to bind proline-rich sequences, and recently it has been proposed that this ambiguity can be reduced by the combination of two WW domains in tandem 54,55 . For the PRPF40A WW domains, only the binding of the first one has been extensively characterized, and a short proline-rich motif (PPLP) was identified with an affinity in the high micromolar range 56 . ...
... LMP2 attenuates ischaemia/hypoxia-induced blood-brain barrier injury through Wnt/β-catenin signalling activation 51 . Transporter associated with antigen processing (TAP) binding protein (TAPBP) encodes tapasin, a key MHC-I pathway component 52,53 , that mediates inflammatory injury via CD8 + T-cell infiltration 52,54 . A novel partial MHC II structure, DRmQ, promotes ischaemic stroke neuroprotection by inhibiting neuroantigen-specific T cells and blocking cytotoxic monocytes/macrophages 55 . ...
... 5 HLA alleles have been extensively studied in several disorders, 6 and particularly associated with autoimmmune and infectious disease susceptibility, resistance, severity and particular clinical outcomes. For instance, the HLA-DQB1*03:02 is associated with type 1 diabetes development, 7 HLA-C*12:02 and HLA-DQB1*06:01 with severe acute hepatitis protection, 8 and HLA-B*27 strongly with ankylosing spondylitis. 9 Generally, the mechanism underlying these associations is related to differential antigen presentation. ...
... As of March 2024, the IPD-IMGT/HLA Database has catalogued a cumulative count of 38,975 HLA alleles, with 9877 alleles described for the HLA-B gene. 1 These molecules serve as fundamental elements in the discrimination between self and non-self and are instrumental in the presentation of antigens to T cells, thus instigating immune responses. 2 In this report the identification of the novel HLA-B*38:01:01:18 allele, is described. It was observed in a 29-year-old Greek female, who was typed for HLA class I and II by NGS technology as volunteer bone marrow donor, during routine typing for HLA class I (HLA-A, -B and -C) and class II (HLA-DRB1, -DQB1 and -DPB1), developed at the Immunology and Histocompatibility Department of Evangelismos General Hospital in Athens. ...
... The sorting signals that target UcPS cargos for secretion are not fully defined. For type I UcPS, cargos appear to contain specific protein sequences that facilitate membrane binding and translocation (8), whereas two consensus targeting sequences were identified for some type III UcPS cargos (9). By contrast, for lysosome-mediated type III UcPS, cargos first enter the lumen of lysosomes via the endosomal sorting complexes required for transport-dependent multivesicular body formation, which uses ubiquitin as a sorting signal (10). ...
... They are preceded by five SH3 domains (Fig. 4A). ITSN1L (hereafter just ITSN1) is constitutively active due to a five amino acid insertion in the SH3A domain 71,72 . ITSN1 SH3A binds synaptojanin1, SH3B binds endophilin. ...
... FBP21 and other B-specific proteins are displaced again during the BRR2-dependent conversion of the B complex to the B act complex 4,27 . FBP21 stably interacts with the Sec63 module of the BRR2 CC and inhibits the BRR2mediated U4/U6 di-snRNA unwinding 28,29 . Two additional, largely intrinsically disordered proteins (IDPs), NTR2 and SNU66, interact with the BRR2 CC in yeast [30][31][32] . ...
... The data of the selected proteins are gathered in Supplementary information (Hemmings et al. 1984;McCubbin et al. 1985;Lynch et al. 1987;Donaldson and Capone 1992;Uversky et al. 1999Uversky et al. , 2002aUversky et al. , 2002bWilkins et al. 1999;Guez et al. 2000;Campbell et al. 2000;Bouvier and Stafford 2000;Adkins and Lumb 2002;Danielsson et al. 2002Danielsson et al. , 2008Karlin et al. 2002;Denning et al. 2002Denning et al. , 2003Permyakov et al. 2003;Zeev-Ben-Mordehai et al. 2003;Tcherkasskaya et al. 2003;Longhi et al. 2003;Mayor et al. 2003;Chong et al. 2004;Sánchez-Puig et al. 2005a, b;Yiu et al. 2006;Goldgur et al. 2007;Geething and Spudich 2007;Magidovich et al. 2007;Khaymina et al. 2007;Gall et al. 2007;Yi et al. 2007;Lowry et al. 2008;Zhang et al. 2008;Paleologou et al. 2008;Kapłon et al. 2008;Krishnan et al. 2008;Paz et al. 2008;Soragni et al. 2008;Haaning et al. 2008;Sivakolundu et al. 2008;Baker 2009;Neira et al. 2009;Habchi et al. 2010;Choi et al. 2011;Perez et al. 2014;Langridge et al. 2014;Yarawsky et al. 2017;Poznar et al. 2017;Wollenhaupt et al. 2018;Więch et al. 2019;Chatterjee and Pollard 2019). ...