István Andó's research while affiliated with HUN-REN Institute of Experimental Medicine and other places

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Publications (106)


Figure 4. fusionB retained its toxicity in D. melanogaster. (a) Constitutive expression of
Retracing the horizontal transfer of a novel innate immune factor in Drosophila
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June 2024

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8 Reads

Rebecca L. Tarnopol

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[...]

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Noah K. Whiteman

Immune systems are among the most dynamically evolving traits across the tree of life, and long-lived macroparasites play an outsized role in shaping animal immunity. Even without adaptive immunity, insects have evolved potent innate immune strategies to neutralize such enemies, including nematodes and parasitoid wasps. One such strategy relies on endosymbioses between insects and toxin-expressing bacteria. Here, we use genome editing in Drosophila melanogaster to retrace the evolution of two of such toxins — cytolethal distending toxin B ( cdtB ) and apoptosis inducing protein of 56kDa ( aip56 ) — that were horizontally transferred from bacteriophages to insects. We found that a cdtB::aip56 fusion gene ( fusionB ), which is conserved in Drosophila ananassae subgroup species, dramatically promoted fly survival and suppressed wasp development when expressed in D. melanogaster immune tissues. FusionB, a functional nuclease, was secreted into the host hemolymph where it targeted the parasitoid embryo’s serosal tissue and is to our knowledge the first humoral anti-parasitoid toxin in Drosophila . When expressed ubiquitously, fusionB slowed development in late stage fly larvae and eventually killed flies, pointing to the salience of regulatory constraint in preventing autoimmunity. Our findings demonstrate how horizontal gene transfer, in the right regulatory context, can instantly provide new and potent innate immune modules in animals.

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Figure 1. Parasitization of D. willistoni and D. melanogaster. (A) L. boulardi do not parasitize D. willistoni larvae. The image is representative of four independent experiments. (B) Eclosion success of D. willistoni was compared to that of D. melanogaster following infection with L. heterotoma and L. victoriae parasitoids. Four independent experiments were carried out with 50 larvae in each. The error bars indicate the standard deviation. Student's t-test was used for statistical analysis.
Figure 2. Infection with different parasitoid wasp species influences the total hemocyte count and affects encapsulation ability. Samples were analyzed 72 h post infection. (A) Three independent experiments were performed with 12 larvae in each. The error bars indicate the standard deviation. Student's t-test was used for statistical analysis. p < 0.001= ***. (B) Visualization of the hemocytes by indirect immunofluorescence using the 1F1 pan-hemocyte monoclonal antibody in uninfected, L. heterotoma-infected and L. victoriae-infected larvae. The arrow points to a multinucleated giant hemocyte. Staining was analyzed using an epifluorescence Zeiss Axioscope 2 MOT microscope. (C) The hemocytes (green) do not attach to L. heterotoma, but do attach to L. victoriae larvae (blue). Samples were examined with an Olympus FV1000 confocal LSM microscope.
Figure 3. Hemocyte subpopulations in both naïve and L. victoriae-infected larvae were identified using discriminative antibodies. Samples of infected larvae were prepared 72 h post infection. (A) Hemocyte type specific monoclonal antibodies (10C5, 1C1, 8G5) were used in indirect immunofluorescence experiments to detect the respective hemocyte subpopulations. Arrows point to multinucleated giant hemocytes. Reactions were detected with an epifluorescence Zeiss Axioscope 2 MOT microscope in three independent experiments. (B) The ratio of the respective cell subpopulations was related to the corresponding total hemocyte number. Three independent experiments were performed with 24 larvae each. The error bars indicate the standard deviation. Student's t-test was used for statistical analysis. p-values: <0.05 = *; <0.01 = **; <0.001 = ***. (C) The net hemocyte count of the respective subpopulations. The data of three independent experiments were cropped, with 24 larvae in each.
Figure 4. The functional characteristics of the hemocyte subsets. Samples from L. victoriae-infected larvae were prepared 72 h post infection. In phagocytosis assays, FITC-labeled E. coli bacteria were used. Staining was analyzed with an Olympus FV1000 confocal LSM microscope. (A) In vivo phagocytosis of hemocytes in naïve and infected larvae. Two independent experiments were performed, with 12 larvae in each. Images are composed by merging two slides in the nucleus plane. Arrows point to multinucleated giant hemocytes. (B) Each hemocyte subpopulation contributed to the encapsulation of the parasitoid wasps. (C) 10C5 positive encapsulating cells also phagocytose bacteria.
Cellular Immunity of Drosophila willistoni Reveals Novel Complexity in Insect Anti-Parasitoid Defense

March 2024

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51 Reads

Cells

Coevolution of hosts and their parasites has shaped heterogeneity of effector hemocyte types, providing immune defense reactions with variable effectiveness. In this work, we characterize hemocytes of Drosophila willistoni, a species that has evolved a cellular immune system with extensive variation and a high degree of plasticity. Monoclonal antibodies were raised and used in indirect immunofluorescence experiments to characterize hemocyte subpopulations, follow their functional features and differentiation. Pagocytosis and parasitization assays were used to determine the functional characteristics of hemocyte types. Samples were visualized using confocal and epifluorescence microscopy. We identified a new multinucleated giant hemocyte (MGH) type, which differentiates in the course of the cellular immune response to parasitoids. These cells differentiate in the circulation through nuclear division and cell fusion, and can also be derived from the central hematopoietic organ, the lymph gland. They have a binary function as they take up bacteria by phagocytosis and are involved in the encapsulation and elimination of the parasitoid. Here, we show that, in response to large foreign particles, such as parasitoids, MGHs differentiate, have a binary function and contribute to a highly effective cellular immune response, similar to the foreign body giant cells of vertebrates.


Distinctive features of Zaprionus indianus hemocyte differentiation and function revealed by transcriptomic analysis

December 2023

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41 Reads

Frontiers in Immunology

Frontiers in Immunology

Background Insects have specialized cell types that participate in the elimination of parasites, for instance, the lamellocytes of the broadly studied species Drosophila melanogaster. Other drosophilids, such as Drosophila ananassae and the invasive Zaprionus indianus, have multinucleated giant hemocytes, a syncytium of blood cells that participate in the encapsulation of the eggs or larvae of parasitoid wasps. These cells can be formed by the fusion of hemocytes in circulation or originate from the lymph gland. Their ultrastructure highly resembles that of the mammalian megakaryocytes. Methods Morphological, protein expressional, and functional features of blood cells were revealed using epifluorescence and confocal microscopy. The respective hemocyte subpopulations were identified using monoclonal antibodies in indirect immunofluorescence assays. Fluorescein isothiocyanate (FITC)-labeled Escherichia coli bacteria were used in phagocytosis tests. Gene expression analysis was performed following mRNA sequencing of blood cells. Results D. ananassae and Z. indianus encapsulate foreign particles with the involvement of multinucleated giant hemocytes and mount a highly efficient immune response against parasitoid wasps. Morphological, protein expressional, and functional assays of Z. indianus blood cells suggested that these cells could be derived from large plasmatocytes, a unique cell type developing specifically after parasitoid wasp infection. Transcriptomic analysis of blood cells, isolated from naïve and wasp-infected Z. indianus larvae, revealed several differentially expressed genes involved in signal transduction, cell movements, encapsulation of foreign targets, energy production, and melanization, suggesting their role in the anti-parasitoid response. A large number of genes that encode proteins associated with coagulation and wound healing, such as phenoloxidase activity factor-like proteins, fibrinogen-related proteins, lectins, and proteins involved in the differentiation and function of platelets, were constitutively expressed. The remarkable ultrastructural similarities between giant hemocytes and mammalian megakaryocytes, and presence of platelets, and giant cell-derived anucleated fragments at wound sites hint at the involvement of this cell subpopulation in wound healing processes, in addition to participation in the encapsulation reaction. Conclusion Our observations provide insights into the broad repertoire of blood cell functions required for efficient defense reactions to maintain the homeostasis of the organism. The analysis of the differentiation and function of multinucleated giant hemocytes gives an insight into the diversification of the immune mechanisms.


Fig. 1. cdtB and aip56 genes were horizontally transferred to insects from phages or their bacterial endosymbiont hosts. (A) Maximum likelihood phylogenies of AIP56 and CdtB proteins show that insect-encoded horizontally transferred gene (HTG) sequences are nested within phage and endosymbiotic bacteria clades of each protein, suggesting ancestral HGT from prokaryotes or phages to insects. Several cases of HGT-derived genes are syntenic within species groups (SI Appendix, Tables S1 and S4), suggesting that HGT was followed by extended vertical transmission. (B) Synteny between cdtB and aip56 in the APSE phage and D. ananassae subgroup species genomes suggests that ancestral HGT occurred from APSE phages or their bacterial lysogens, which may contribute to the efficient wasp resistance of D. ananassae. (C) Insect species tree highlighting the insect orders and taxa which horizontally acquired cdtB and/or aip56 genes. Shown are extant representatives of the possible donor lineage.
Fig. 2. Horizontally transferred cdtB and cdtB::aip56 fusion gene and protein expression are induced after infection with endoparasitoid wasps. (A) Expression of cdtB, cdtB::aip56 A, and cdtB::aip56 B genes varies across D. ananassae developmental stages and is induced after L. boulardi infections (labeled in blue). L1, L2, and L3 correspond to first, second, and third larval developmental stages, respectively. 24 h, 48 h, and 72 h correspond to hours following wasp infection or control treatment. The error bars indicate the SE of four to six independent data points. Student's t test was used for statistical analysis of gene expression profiles between naïve and wasp-induced larval samples. P-values: <0.05 = *; <0.01 = **; <0.001 = ***; ns = not significant. ∆∆Ct was calculated by normalizing ∆Ct against those of 10-d-old naïve adult samples. (B) WB analysis of single-copy CdtB and fusion proteins, following the same developmental series and parasitization regimes as in (A). Protein levels mirror those of messenger RNA (mRNA) (A). (C) Expression of CdtB and AIP56 A/B proteins detected by IIF analysis.
Fig. 3. Processed CdtB::AIP56 A/B proteins are present in parasitoid wasps isolated from infected D. ananassae larvae. (A) The CdtB::AIP56 A/B could be reduced by 2-ME, which revealed that disulfide bonds link the CdtB and the AIP56 subunits of the processed fusion proteins. Twenty microgram protein was loaded per lane. (B) AIP56 A/B proteins in parasitoid wasp larvae isolated from wild-type and mutant D. ananassae.
Fig. 4. D. ananassae mutants are less likely to survive parasitization from L. boulardi, L. heterotoma, and L. victoriae than wild-type flies. Leptopilina spp. wasps are more likely to eclose when developing in D. ananassae mutants. The error bars indicate the SEM from three to four independent data points. Tukey's post-hoc test was used to compare means and assess statistical significance of differences; for clarity, only differences between mutant lines and wild type are shown. P-values: <0.05 = *; <0.01 = **; ns = not significant. Results of all pair-wise comparisons between all mutant lines are in SI Appendix, Table S6.
Evolution of insect innate immunity through domestication of bacterial toxins

April 2023

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127 Reads

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9 Citations

Proceedings of the National Academy of Sciences

Toxin cargo genes are often horizontally transferred by phages between bacterial species and are known to play an important role in the evolution of bacterial pathogenesis. Here, we show how these same genes have been horizontally transferred from phage or bacteria to animals and have resulted in novel adaptations. We discovered that two widespread bacterial genes encoding toxins of animal cells, cytolethal distending toxin subunit B (cdtB) and apoptosis-inducing protein of 56 kDa (aip56), were captured by insect genomes through horizontal gene transfer from bacteria or phages. To study the function of these genes in insects, we focused on Drosophila ananassae as a model. In the D. ananassae subgroup species, cdtB and aip56 are present as singular (cdtB) or fused copies (cdtB::aip56) on the second chromosome. We found that cdtB and aip56 genes and encoded proteins were expressed by immune cells, some proteins were localized to the wasp embryo's serosa, and their expression increased following parasitoid wasp infection. Species of the ananassae subgroup are highly resistant to parasitoid wasps, and we observed that D. ananassae lines carrying null mutations in cdtB and aip56 toxin genes were more susceptible to parasitoids than the wild type. We conclude that toxin cargo genes were captured by these insects millions of years ago and integrated as novel modules into their innate immune system. These modules now represent components of a heretofore undescribed defense response and are important for resistance to parasitoid wasps. Phage or bacterially derived eukaryotic toxin genes serve as macromutations that can spur the instantaneous evolution of novelty in animals.


The Effect of Feeding with Central European Local Mulberry Genotypes on the Development and Health Status of Silkworms and Quality Parameters of Raw Silk

September 2022

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233 Reads

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11 Citations

Insects

Silkworm rearing activities ceased in the 1970′s in several European countries. Attempts on the re-establishment of ecological and sustainable sericulture in Slovenia and Hungary are ongoing. The aim of the study was to assess the usability of locally adapted mulberry genotypes for sericulture and to estimate connections between leaf compound and silkworm performance parameters. A controlled feeding experiment of silkworms was performed to test the influence of leaves from selected trees on the growth of larvae, the health and microbiological status of larvae (e.g., gut bacterial microbiome, Bombyx mori nucleopolyhedrovirus infection), weight of cocoons and raw silk parameters. The Slovenian and Hungarian mulberry genotypes had significantly higher total protein contents, and lower total phenolic contents and differed significantly in some individual phenolics compared to the reference sericultural and fruit varieties. Significant differences were found in the contents of the macro- and microelements, namely S, Mn, Fe, and Sr. Based on correlative statistics and multivariate analysis, a combined positive influence of proteins, specific phenolics, and microelements on larval growth and silk thread parameters was predicted. The results of the study indicate that selected local Slovenian and Hungarian mulberry varieties are suitable for high-quality silk cocoon and raw silk production.


Figure 1. Lamellocyte and crystal cell marker genes. Genes with enhanced expression in lamellocyte-and crystal cell-related clusters, as reported by Cattenoz et al., 2020 (Cat), Tattikota et al., 2020 (Tat), Fu et al., 2020 (Fu), Leitão et al., 2020 (Lei), Cho et al., 2020 (Cho), and Girard et al., 2021 (Gir). Relative expression ('FC') in bulk plasmatocytes compared to whole larvae, as reported by Ramond et al., 2020, is shown in a separate column (Ram). The figure summarizes the most consistently and strongly enhanced genes for each of these cell classes, and the average (geometric mean) Figure 1 continued on next page
Figure 5. Orthologs of Drosophila lamellocyte and crystal cell markers expressed in mosquito and silkworm hemocyte clusters. Data from single-cell RNAseq studies by Severo et al., 2018 (Sev), Raddi et al., 2020 (Rad), Kwon et al., 2021a (Kwo), and Feng et al., 2021 (Feng). Drosophila markers for which no orthologs could be identified were excluded from the analysis. Clusters where the genes are significantly enriched are indicated, with highest enrichment first. Non-hemocyte clusters are omitted.
Figure 7. Phylogenetic relationships between Drosophilid integrin alphaPS3, 4, and 5 homologs. Maximum parsimony tree of protein sequences found by blastp search of all Drosophilidae sequences annotated in the refseq_protein database. Most ItgaPS3 and ItgaPS3-like genes have two alternative splice forms, A and B, with different approximately 63 amino acid leader sequences. The A-and B-form leaders were concatenated before Figure 7 continued on next page
Figure 8. Schematic overview of drosophilid hemocyte morphologies. Plasmatocyte, crystal cell, and lamellocyte cartoons are sketched from images of D. melanogaster hemocytes (Rizki, 1957), the D. hydei nematocyte from Kacsoh et al., 2014, the Zaprionus indianus multinucleated giant hemocyte from Cinege et al., 2020, and the D. affinis pseudopodocyte from Havard et al., 2012. The primocyte illustration is based on published images of primocyte-like cells in adults (Boulet et al., 2021) and primocytes in the posterior signaling center (Krzemień et al., 2007; Mandal et al., 2007). The morphology of circulating larval primocytes is unknown.
Insect hemocyte terminology.
Hematopoietic plasticity mapped in Drosophila and other insects

August 2022

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198 Reads

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22 Citations

eLife

Hemocytes, similar to vertebrate blood cells, play important roles in insect development and immunity, but it is not well understood how they perform their tasks. New technology, in particular single-cell transcriptomic analysis in combination with Drosophila genetics, may now change this picture. This review aims to make sense of recently published data, focusing on Drosophila melanogaster and comparing to data from other drosophilids, the malaria mosquito, Anopheles gambiae, and the silkworm, Bombyx mori. Basically, the new data support the presence of a few major classes of hemocytes: (1) a highly heterogenous and plastic class of professional phagocytes with many functions, called plasmatocytes in Drosophila and granular cells in other insects. (2) A conserved class of cells that control melanin deposition around parasites and wounds, called crystal cells in D. melanogaster, and oenocytoids in other insects. (3) A new class of cells, the primocytes, so far only identified in D. melanogaster. They are related to cells of the so-called posterior signaling center of the larval hematopoietic organ, which controls the hematopoiesis of other hemocytes. (4) Different kinds of specialized cells, like the lamellocytes in D. melanogaster, for the encapsulation of parasites. These cells undergo rapid evolution, and the homology relationships between such cells in different insects are uncertain. Lists of genes expressed in the different hemocyte classes now provide a solid ground for further investigation of function.


Broad Ultrastructural and Transcriptomic Changes Underlie the Multinucleated Giant Hemocyte Mediated Innate Immune Response against Parasitoids

December 2021

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163 Reads

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6 Citations

Multinucleated giant hemocytes (MGHs) represent a novel type of blood cell in insects that participate in a highly efficient immune response against parasitoid wasps involving isolation and killing of the parasite. Previously, we showed that circulating MGHs have high motility and the interaction with the parasitoid rapidly triggers encapsulation. However, structural and molecular mechanisms behind these processes remained elusive. Here, we used detailed ultrastructural analysis and live cell imaging of MGHs to study encapsulation in Drosophila ananassae after parasitoid wasp infection. We found dynamic structural changes, mainly driven by the formation of diverse vesicular systems and newly developed complex intracytoplasmic membrane structures, and abundant generation of giant cell exosomes in MGHs. In addition, we used RNA sequencing to study the transcriptomic profile of MGHs and activated plasmatocytes 72 h after infection, as well as the uninduced blood cells. This revealed that differentiation of MGHs was accompanied by broad changes in gene expression. Consistent with the observed structural changes, transcripts related to vesicular function, cytoskeletal organization, and adhesion were enriched in MGHs. In addition, several orphan genes encoding for hemolysin-like proteins, pore-forming toxins of prokaryotic origin, were expressed at high level, which may be important for parasitoid elimination. Our results reveal coordinated molecular and structural changes in the course of MGH differentiation and parasitoid encapsulation, providing a mechanistic model for a powerful innate immune response.


Classification vs regression
a Regression plane concept. The classical way to model a biological process includes the phenotypical analysis of cells (i.e. subdividing cells into classes). However, in a high-content screening scenario, the multitude of different phenotypes makes it extremely challenging to create a set of representative classes. A possible solution builds on using a regression line, allowing to represent a single effect without the need of discretization. Nonetheless, biological processes are typically characterized by numerous ongoing effects. Thus, the regression plane represents a good trade-off between visualization capabilities and annotation complexity. Basically, it allows to represent a biological process with the limits of a planar graph. b Active regression. The aim of an active regression algorithm is to improve the training set (TS) to achieve better prediction performance. It is an iterative process where a cell that is difficult to annotate is proposed to the oracle who annotates it, and by doing so moves it to the TS used to train the regression model. c Synthetic dataset. Image from the synthetic dataset, generated using SIMCEP. d Experimental design. The designed processes overlayed on the space of perturbations. 6 processes are tracks in the space, and an extra process is formed of uniformly distributed cells (latent process 7). e Designed processes. The 6 continuous processes are modelled between two fixed endpoints: green cells of highly irregular shape and red, rounded cells. To assign a colour to the middle point of each process we interpolated between white (process 1) and blue (process 6). f Classification vs regression applied on synthetic data. Comparison of the performance of regression and classification. Statistics: precision, recall and the number of identified processes. Columns represent mean, error bars show the standard deviations from n = 5 independent users/experimental setup. Source data are provided as a Source Data file.
Lipid droplet dataset
a Training set. Regression plane of 457 cells representing various lipid morphologies, created by an expert biologist. b RP output. Kernel Density Estimation (KDE)-maps of the predicted regression positions for cells treated with selected siRNAs. Arrows originate from the peak of the control KDE-map, and point to the peaks of the selected KDE-maps. c HCS analysis. Plate-based analysis performed by comparing well-based KDE-maps. Meta-visualization (in this case PCA–Principal Component Analysis) is obtained by extracting the principal components (PC1 and PC2) of the flattened KDE-maps.
Mitosis data analysis
a Regression plane of 585 cells annotated by a microscopy expert. b 498 trajectories for all the predicted cells. The median curve is shown in solid blue. c Example of a single-cell trajectory with representative cell icons visualized. d Regression plane with all (n = 19,920) predicted cells. The borders of the cell icons correspond to their nuclear area (Colour Frame module). Highlighted regions: early prophase region, large nuclear area (red). Metaphase region, nuclear area decreased (orange). Early-anaphase region, nuclear area is increasing as spindle fibres are pulling chromosomes apart (yellow). Anaphase, nuclear area dropped as the nucleus is considered as two separate objects with half the area (green). Late-telophase, nuclear area increasing up to half of the initial value (blue). e Trend for the normalized nuclear area according to standard mitotic time. Grey lines represent single-cell trajectories. f Trend for the normalized nuclear area according to the regression plane. Grey lines represent single-cell trajectories. The coordinates predicted by RP were converted to 1D by taking the angle argument of the polar coordinate representation as illustrated in a.
Hemocyte dataset analysis
a Training set. 109 cells were placed on the regression plane by a microscopy expert. Cells were segmented by applying the NucleAIzer⁴⁰ deep learning method on brightfield microscopy images. b Single cell features. Colour-coded feature values overlay on the predicted cells. c Density plots. Kernel density estimation of single cells. d Single-cell trajectories. 2323 cell trajectories on the regression plane. e Selected cell trajectories. Representative phenotypes highlighted in d. f Differentiation speed histogram. Cell differentiation speed on the regression plane. g Trajectory histogram. 2D trajectory histogram on the regression plane and 1D projection with trajectory counts, including only those trajectories that reach beyond the green line in c.
Regression plane concept for analysing continuous cellular processes with machine learning

May 2021

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197 Reads

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9 Citations

Nature Communications

Biological processes are inherently continuous, and the chance of phenotypic discovery is significantly restricted by discretising them. Using multi-parametric active regression we introduce the Regression Plane (RP), a user-friendly discovery tool enabling class-free phenotypic supervised machine learning, to describe and explore biological data in a continuous manner. First, we compare traditional classification with regression in a simulated experimental setup. Second, we use our framework to identify genes involved in regulating triglyceride levels in human cells. Subsequently, we analyse a time-lapse dataset on mitosis to demonstrate that the proposed methodology is capable of modelling complex processes at infinite resolution. Finally, we show that hemocyte differentiation in Drosophila melanogaster has continuous characteristics.


Figure 1 Single-cell mass cytometry revealed the expansion of hemocytes in hop Tum and l(3)mbn 1
Figure 4 Immune activation by infestation with the Leptopilina boulardi parasitoid wasp of the lozenge>GFP strain A. viSNE analysis of naive (lz>GFP) and immune induced (lz>GFP i.i.) Drosophila larvae. The tSNE analysis of H3, H18, L1, L2, L4, L6, P1, 3A5, and A-GFP was carried out within the population of pan-hemocyte H2 positive live singlets. Red boxes mark a subpopulation, the transitional phenotype of hemocytes expressing both lamellocyte (L4+) and plasmatocyte (P1) markers upon immune induction. B. The percentage of H3, H18, L1, L2, L4, L6, P1, anti-GFP (crystal cells), and 3A5 positive cells. C. The heatmap of the (arcsinhtransformed) median values shows the expression changes of the hemocyte marker expression upon immune induction. The analysis was performed within the pan-hemocyte marker H2 positive live singlets. A-GFP, anti-GFP marking crystal cells in this particular system.
Figure S8). Merging viSNE graphs outlined characteristic maps of each strain based on high parametric mass cytometry data (Figure 3A−C). The Ore-R and w 1118 controls showed overlapping patterns on the viSNE diagram (Figure 3A−C), with a somewhat lower expression of all markers observed in case of the w 1118 , which may be due to uncontrollable genetic background variations. The dots representing hdc ∆84
Figure S8) from single-cell data at the protein level, which places the innate immunity of Drosophila in a new biological insight. Additionally, we report herein two novel hemocyte markers, 3A5 with intracellular localization and H18 located on the cell surface. The simultaneous detection of several antigens provided by CyTOF could not be achieved earlier by traditional microscopy.
List of the antibodies used for mass cytometry
Immunoprofiling of Drosophila Hemocytes by Single-Cell Mass Cytometry

March 2021

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137 Reads

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8 Citations

Genomics Proteomics & Bioinformatics

Single-cell mass cytometry (SCMC) combines features of traditional flow cytometry (FACS) with mass spectrometry, making it possible to measure several parameters at the single-cell level for a complex analysis of biological regulatory mechanisms. In this study, we optimized SCMC to analyze hemocytes of the Drosophila innate immune system. We used metal-conjugated antibodies (H2, H3, H18, L1, L4, and P1 at the cell surface, intracellular 3A5 and L2) and anti-IgM (L6 at the cell surface) to detect the levels of antigens, while anti-GFP was used to detect crystal cells in the immune induced samples. We investigated the antigen expression profile of single cells and hemocyte populations in naive states, in immune induced states, in tumorous mutants bearing a driver mutation in the Drosophila homologue of Janus kinase (hopTum) and carrying deficiency of a tumor suppressor l(3)mbn¹ gene, as well as in stem cell maintenance-defective hdcΔ84 mutant larvae. Multidimensional analysis enabled the discrimination of the functionally different major hemocyte subsets for lamellocytes, plasmatocytes, and crystal cells, and delineated the unique immunophenotype of Drosophila mutants. We have identified subpopulations of L2⁺/P1⁺ (l(3)mbn¹), L2⁺/L4⁺/P1⁺ (hopTum) transitional phenotype cells in the tumorous strains and a subpopulation of L4⁺/P1⁺ cells upon immune induction. Our results demonstrated for the first time that SCMC, combined with multidimensional bioinformatic analysis, represents a versatile and powerful tool to deeply analyze the regulation of cell-mediated immunity of Drosophila.


Figure 2
FIGURE LEGENDS
Regression plane concept: analysing continuous cellular processes with machine learning

September 2020

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156 Reads

Biological processes are inherently continuous, and the chance of phenotypic discovery is significantly restricted by discretising them. Using multi-parametric active regression we introduce a novel concept to describe and explore biological data in a continuous manner. We have implemented Regression Plane (RP), the first user-friendly discovery tool enabling class-free phenotypic supervised machine learning.


Citations (58)


... In most insect species, the serosa functions as the initial cellular epithelial tissue, playing a crucial role in embryo growth and development, including functions related to immunity and the regulation of dorsal closure. [57][58][59][60] Moreover, previous research has revealed that genes influencing the formation or degradation of the serosal cuticle play an essential role in embryonic development. 55,57 Therefore, our study further emphasizes the importance of the serosal cuticle in embryonic development and enriches the serosal cuticlerelated genes. ...

Reference:

RNAi‐mediated knockdown of papilin gene affects the egg hatching in Nilaparvata lugens
Evolution of insect innate immunity through domestication of bacterial toxins

Proceedings of the National Academy of Sciences

... This finding suggests that genotypes differ in their leaf characteristics, making some more suitable for consumption than others (Krishna et al., 2020;Toolir and Mirjalili, 2023). The number of leaves is directly related to the potential for silkworm rearing, as more leaves can sustain a larger silkworm population (Urbanek Krajnc et al., 2022). Different genotypes are known to produce varying numbers of leaves due to genetic diversity. ...

The Effect of Feeding with Central European Local Mulberry Genotypes on the Development and Health Status of Silkworms and Quality Parameters of Raw Silk

Insects

... Based on transcriptomic studies in D. melanogaster, a new class of hemocytes, called primocytes, have been identified. These cells are present in every hematopoietic compartment and are likely to be involved in the activation of effector hemocytes [13,14]. Certain non-model species of Drosophilidae utilize other effector hemocyte types to encapsulate parasitoids. ...

Hematopoietic plasticity mapped in Drosophila and other insects

eLife

... Hemolysin E proteins are poreforming toxins produced by certain microbial species belonging to the Enterobacteriaceae family and used to attack eukaryotic cells [30][31][32]. Such genes were detected in D. ananassae and are supposed to be involved in the elimination of parasitoids [33]. Moreover, other genes captured by horizontal gene transfer encode for humoral factors produced by the fat body and are functional modules in the anti-parasitoid defense of D. ananassae subgroup species [34]. ...

Broad Ultrastructural and Transcriptomic Changes Underlie the Multinucleated Giant Hemocyte Mediated Innate Immune Response against Parasitoids
Journal of Innate Immunity

Journal of Innate Immunity

... Moreover, state markers that could provide a continuous description are unknown for many biological processes. Consequently, we are currently limited to studying discrete cell states with missing intermediate states, which are often critical (Stumpf et al, 2017;Szkalisity et al, 2021). ...

Regression plane concept for analysing continuous cellular processes with machine learning

Nature Communications

... Mass cytometry was performed as previously described by our group with minor modifications (38,39). Briefly, cells were resuspended in 50 µl of MCSB supplemented with 1:20 v/v Human TruStain FcX Fc Receptor Blocking Solution (BioLegend, San Diego, California, USA) and incubated at RT for 10 min. ...

Immunoprofiling of Drosophila Hemocytes by Single-Cell Mass Cytometry

Genomics Proteomics & Bioinformatics

... The consequences of any physical and biological impact on the A. mellifera adult immune system can be assessed by total hemocyte count (THC) and differential hemocyte count (DHC) (Szymaś and Jędruszuk, 2003). The irradiation effect profoundly impacts the immune system, with the induced consequences reflected in the changes in total hemocyte numbers and the proportions of different cell types (Vogelweith et al., 2017;Gábor et al., 2020). The most common circulating hemocyte cells of A. mellifera such as plasmatocytes, prohemocytes, granulocytes and oenocytes can be visualised with staining by light microscopic analysis (Vilcinskas et al., 1997). ...

Identification of reference markers for characterizing honey bee (Apis mellifera) hemocyte classes

Developmental & Comparative Immunology

... The lymph glands of L. victoriae-infected larvae, already at 24 h post infection, carried more 10C5 positive cells than the uninfected samples ( Figure 5A), showing that the hematopoietic organ also serves as a source for this cell type in the infected state, and could therefore contribute to the substantial increase in the number of 10C5 positive circulating cells ( Figure 3B). Multinucleation of hemocytes in both D. ananassae and Z. indianus occurs via cell fusion in circulation [15,22]. Here, using the nucleotide analogue, bromodeoxyuridine (BrdU), which incorporates into the DNA of the cells, we showed that hemocytes of BrdUtreated and BrdU-untreated larvae were able to fuse ex vivo to form multinucleated cells ( Figure 5B). ...

Cellular Immune Response Involving Multinucleated Giant Hemocytes with Two-Step Genome Amplification in the Drosophilid Zaprionus indianus
Journal of Innate Immunity

Journal of Innate Immunity

... Several members of the Nimrod superfamily appear to function as receptors in phagocytosis and bacterial binding [90,91]. NimC1 and Eater, two EGF-like repeat Nimrod surface receptors specifically expressed in hemocytes, synergistically contribute to bacterial phagocytosis [92] and are both absent in Coccidae. ...

Two Nimrod receptors, NimC1 and Eater, synergistically contribute to bacterial phagocytosis in Drosophila melanogaster

... The homozygous mutation of l(3)mbn causes malignant transformation, enhanced hemocyte proliferation, and lamellocyte differentiation of blood cells in l(3)mbn 1 Drosophila [28]. We also investigated the immunophenotype of a strain carrying a mutation in hdc (hdc Δ84 ), which encodes headcase, a Drosophila homolog of the human tumor suppressor HECA (Headcase protein homolog), and plays a role in hematopoietic stem cell maintenance [29,30]. In addition, Oregon-R (Ore-R) and white mutant w 1118 were included as reference strains, since they were previously considered as wild type and used for the generation of mutants [31]. ...

Headcase is a Repressor of Lamellocyte Fate in Drosophila melanogaster

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