Gabor Laczko's research while affiliated with Adam Mickiewicz University and other places

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Publications (63)


Anisotropie Rotation of Yt-Base in n-Propanol at – 20°C Studied by Frequency-Domain Fluorometry and Global Analysis
  • Article
  • Full-text available

June 2014

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20 Reads

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1 Citation

Zeitschrift fur Naturforschung a

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S. Paszyc

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[...]

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Henryk Cherek

The frequency response of the polarized emission of Yt-base in n-propanol at —20 C was measured. Excitation wavelengths of 346, 312 and 285 nm were used for which the fundamental anisotropies were 0.32, 0.19 and 0.04, respectively. Additional data were obtained using CC14 to decrease the mean decay time from 10 ns to 0.7 ns. These nine sets of data were analyzed globally to recover the anisotropy decay law. Two correlation times, of about 146 ps and 502 ps, were needed for a good fit. © 1991, Verlag der Zeitschrift für Naturforschung. All rights reserved.

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Fluorescence polarization standard for near infrared spectroscopy and microscopy

December 2008

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20 Reads

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13 Citations

We present studies of polarized absorption [linear dichroism (LD)] and fluorescence polarization of the styryl derivative (LDS 798) embedded in oriented poly(vinyl alcohol) (PVA) films. These films were oriented by progressive stretching up to eight folds. Both vertical and horizontal components of absorptions and fluorescence were measured and dichroic ratios were determined for different film stretching ratios. The dichroic ratio and fluorescence anisotropy values were analyzed as a function of PVA film stretching ratio by fitting according to the previously developed theory. For maximum stretching ratios, exceptionally high anisotropy (approximately 0.8) and polarization (approximately 0.9) values have been measured. The stretched films have high polarization values also for isotropic excitation in a wide spectral range (500-700 nm). Such films can be conveniently used as high polarization standards and we envision they will also have applications in near infrared (NIR) imaging microscopy, where they can be used for correcting an instrumental factor in polarization measurements.


Fig. (1). Absorption (----) and emission (—) spectra of anti-rabbit IgG antibodies labeled with Seta-670 in 50 mM Na-phosphate buffer (7.2 pH). Emission spectra were recorded using a 635 nm excitation wavelength. Insert: Plot of fluorescence intensity versus number of labels. Solid line is a parabolic fit to the experimental data.  
Fig. (2). A) Fluorescence intensity per average number of labels as a function of labeling ratio (L/P). B) Measured emission anisotropy as function of labeling ratio (L/P).  
Fig. (3). A) Measured fluorescence intensity decays of Seta-670-labeled IgG for different labeling ratios (L/P = 0.5, 3.2, and 10.9) in 50 mM Na-phosphate buffer, pH 7.2. The solid black lines are the best two (for L/P = 0.5) or three exponential (for L/P = 3.2 and 10.9) fits. IRF: instrumental response function. The fitted fluorescence lifetimes are listed in Table 1. The bottom panels (B), (C) and (D) show the residuals for the relevant fits.  
Fig. (4). Wide field image for anti-rabbit IgG antibodies labeled with Seta-670 deposited on a glass slide (L/P = 3.2) obtained using 635 nm excitation (~4 µW) and observed through a 685/35 nm bandpass filter. (A) before and (B) after photobleaching of a single IgG protein/spot (marked by arrow). (C) typical fluorescence intensity trajectory during photobleaching illumination (~12 µW) for a L/P = 3.2 conjugate .The selected spot undergoes a three steps irreversible photobleaching. The inserts show the time-resolved photon histograms and calculated fluorescence lifetimes for the corresponding regions of fluorescence intensity trajectory.  
Fig. (5).  

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Single Molecule Studies of Multiple-Fluorophore Labeled Antibodies. Effect of Homo-FRET on the Number of Photons Available Before Photobleaching

November 2008

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390 Reads

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59 Citations

Current Pharmaceutical Biotechnology

Advancements in single molecule detection (SMD) continue to unfold powerful ways to study the behavior of individual and complex molecular systems in real time. SMD enables the characterization of complex molecular interactions and reveals basic physical phenomena underlying chemical and biological processes. We present here a systematic study of the quenching efficiency of Förster-type energy-transfer (FRET) for multiple fluorophores immobilized on a single antibody. We simultaneously monitor the fluorescence intensity, fluorescence lifetime, and the number of available photons before photobleaching as a function of the number of identical emitters bound to a single IgG antibody. The detailed studies of FRET between individual fluorophores reveal complex through-space interactions. In general, even for two or three fluorophores immobilized on a single protein, homo-FRET interactions lead to an overall non-linear intensity increase and shortening of fluorescence lifetime. Over-labeling of protein in solution (ensemble) results in the loss of fluorescence signal due to the self-quenching of fluorophores making it useless for assays applications. However, in the single molecule regime, over-labeling may bring significant benefits in regards to the number of available photons and the overall survival time. Our investigation reveals possibilities to significantly increase the observation time for a single macromolecule allowing studies of macromolecular interactions that are not obscured by ensemble averaging. Extending the observation time will be crucial for developing immunoassays based on single-antibody.


Distribution of Distances Between the Tryptophan and the N-Terminal Residue of Melittin in its Complex with Calmodulin, Troponin C, and Phospholipids

April 2008

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50 Reads

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22 Citations

Protein Science

Protein Science

We used frequency-domain measurements of fluorescence resonance energy transfer to measure the distribution of distances between Trp-19 of melittin and a 1-dimethylamino-5-sulfonylnaphthalene (dansyl) residue on the N-terminal-α-amino group. Distance distributions were obtained for melittin free in solution and when complexed with calmodulin (CaM), troponin C (TnC), or palmitoyloleoyl-L-α-phosphatidylcholine (POPC) vesicles. A wide range of donor (Trp-19)-to-acceptor (dansyl) distances was found for free melittin, which is consistent with that expected for the random coil state, characterized by a Gaussian width (full width at half maxima) of 28.2 Å. In contrast, narrow distance distributions were found for melittin complexed with CaM, 8.2 Å, or with POPC vesicles, 4.9 Å. A somewhat wider distribution was found for the melittin complex with TnC, 12.8 Å, suggesting the presence of heterogeneity in the mode of binding between melittin and TnC. For all the complexes the mean Trp-19 to dansyl distance was near 20 Å. This value is somewhat smaller than expected for the free α-helical state of melittin, suggesting that binding with CaM or TnC results in a modest decrease in the length of the melittin molecule.



Protein/Lipid Interaction in the Bacterial Photosynthetic Reaction Center: Phosphatidylcholine and Phosphatidylglycerol Modify the Free Energy Levels of the Quinones †

November 2004

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86 Reads

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76 Citations

Biochemistry

The role of characteristic phospholipids of native membranes, phosphatidylcholine (PC), phosphatidylglycerol (PG), and cardiolipin (CL), was studied in the energetics of the acceptor quinone side in photosynthetic reaction centers of Rhodobacter sphaeroides. The rates of the first, k(AB)(1), and the second, k(AB)(2), electron transfer and that of the charge recombination, k(BP), the free energy levels of Q(A)(-)Q(B) and Q(A)Q(B)(-) states, and the changes of charge compensating protein relaxation were determined in RCs incorporated into artificial lipid bilayer membranes. In RCs embedded in the PC vesicle, k(AB)(1) and k(AB)(2) increased (from 3100 to 4100 s(-1) and from 740 to 3300 s(-1), respectively) and k(BP) decreased (from 0.77 to 0.39 s(-1)) compared to those measured in detergent at pH 7. In PG, k(AB)(1) and k(BP) decreased (to values of 710 and 0.26 s(-1), respectively), while k(AB)(2) increased to 1506 s(-1) at pH 7. The free energy between the Q(A)(-)Q(B) and Q(A)Q(B)(-) states decreased in PC and PG (DeltaG degrees (Q)A-(Q)B(-->)(Q)A(Q)B- = -76.9 and -88.5 meV, respectively) compared to that measured in detergent (-61.8 meV). The changes of the Q(A)/Q(A)(-) redox potential measured by delayed luminescence showed (1) a differential effect of lipids whether RC incorporated in micelles or vesicles, (2) an altered binding interaction between anionic lipids and RC, (3) a direct influence of PC and PG on the free energy levels of the primary and secondary quinones probably through the intraprotein hydrogen-bonding network, and (4) a larger increase of the Q(A)/Q(A)(-) free energy in PG than in PC both in detergent micelles and in single-component vesicles. On the basis of recent structural data, implications of the binding properties of phospholipids to RC and possible interactions between lipids and electron transfer components will be discussed.


Delayed Fluorescence from the Photosynthetic Reaction Center Measured by Electronic Gating of the Photomultiplier

May 2004

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7 Reads

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7 Citations

Peptide Science

The decay of the delayed fluorescence (920 nm) of reaction centers from the photosynthetic bacterium Rhodobacter sphaeroides R26 in the P(+)Q(A)(-) charge-separated state (P and Q(A) are the primary donor and quinone, respectively) has been monitored in a wide (100 ns to 100 ms) time range. The photomultiplier (Hamamatsu R3310-03) was protected from the intense prompt fluorescence by application of gating potential pulses (-280 V) to the first, third, and fifth dynodes during the laser pulse. The gain of the photomultiplier dropped transiently by a factor of 1 x 10(6). The delayed fluorescence showed a smooth but nonexponential decay from 100 ns to 1 ms that was explained by the relaxation of the average free energy between P* and P(+)Q(A)(-) changing from -580 to -910 meV. This relaxation is due to the slow protein response to charge separation and can be described by a Kohlrausch relaxation function with time constant of 65 micros and a stretching exponent of alpha = 0.45.




Quinone-Dependent Delayed Fluorescence from the Reaction Center of Photosynthetic Bacteria

August 2000

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29 Reads

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31 Citations

Biophysical Journal

Millisecond delayed fluorescence from the isolated reaction center of photosynthetic bacteria Rhodobacter sphaeroides was measured after single saturating flash excitation and was explained by thermal repopulation of the excited bacteriochlorophyll dimer from lower lying charge separated states. Three exponential components (fastest, fast, and slow) were found with lifetimes of 1.5, 102, and 865 ms and quantum yields of 6.4 x 10(-9), 2.2 x 10(-9), and 2.6 x 10(-9) (pH 8.0), respectively. While the two latter phases could be related to transient absorption changes, the fastest one could not. The fastest component, dominating when the primary quinone was prereduced, might be due to a small fraction of long-lived triplet states of the radical pair and/or the dimer. The fast phase observed in the absence of the secondary quinone, was sensitive to pH, temperature, and the chemical nature of the primary quinone. The standard free energy of the primary stable charge pair relative to that of the excited dimer was -910 +/- 20 meV at pH 8 and with native ubiquinone, and it showed characteristic changes upon pH and quinone replacement. The interaction energy ( approximately 50 meV) between the cluster of the protonatable groups around GluL212 and the primary semiquinone provides evidence for functional linkage between the two quinone binding pockets. An empirical relationship was found between the in situ free energy of the primary quinone and the rate of charge recombination, with practical importance in the estimation of the free energy levels from the easily available lifetime of the charge recombination. The ratio of the slow and fast components could be used to determine the pH dependence of the free energy level of the secondary stable charge pair relative to that of the excited dimer.


Citations (39)


... Chromatophores (OD 860 = 50) were mixed with 2 mM ADP and 100 mM K-phosphate buffer (pH 8) and illuminated for 3 min in a quartz ultra-microcuvette (105.250; Hellma) by an 860 nm/2.6 W light-emitting diode (LED) lamp (SFH 4783; OSRAM), which provided an irradiance of 25 mW/cm 2 , equivalent to about 1.1 × 10 17 photons/s/cm 2 (note that the employed photon flux lies below the saturation level) (59). ATP quantitation was carried out in the same microcuvette, by adding 90 μL of the assay solution and measuring the initial value of the developed bioluminescence (560 nm) by means of a Cary Varian Eclipse spectrofluorometer set as luminometer in kinetic mode. ...

Reference:

Chromatophores efficiently promote light-driven ATP synthesis and DNA transcription inside hybrid multicompartment artificial cells
Kinetic limitations in turnover of photosynthetic bacterial reaction center protein

Acta Biologica Szegediensis

... That is, the desired signal and the autofluorescence contribute to the phase and modulation values at all modulation frequencies. However, FD measurements can also be accomplished using a train of light pulses [31][32][33]. In this approach the measurements rely on the harmonic content of the light pulses. ...

10-GHz frequency-domain fluorometer
  • Citing Conference Paper
  • May 1990

The Review of scientific instruments

... The kinetics of delayed fluorescence follows the kinetics of the charge recombination. The free energy levels of the quinone states relative to that of the excited dimer can be determined from the ratio of the amplitudes (or intensities) of the delayed and prompt fluorescence (Arata and Parson, 1981;Turzó et al., 1999). Because of the very low intensity and the near-infrared emission, the measurement of delayed fluorescence in the millisecond time domain (contrary to that in the pico-and nanosecond range; see Ogrodnik et al., 1999, for a recent review) has not become a routine method of free energy determination (Woodbury et al., 1986). ...

Proton Binding Is Part of Protein Relaxation of Flash-Excited Reaction Center from Photosynthetic Bacteria Rhodobacter sphaeroides
  • Citing Article
  • January 1999

Israel Journal of Chemistry

... It can be encountered in diverse patterns ranging from the red fluorescent tips of the tentacles of siphonophores to the green spots on the backs of salamanders (Haddock et al. 2005, Lamb andDavis 2020). Fluorescence may be produced from extrinsic compounds and fundamental biological building blocks, such as riboflavin, chitin compounds, and amino acids like tryptophan (Lakowicz 2006, Yang et al. 2016. Organisms can produce these molecules intrinsically or obtain them extrinsically from their diet or symbionts. ...

Frequency-Domain Fluorescence Spectroscopy: Instrumentation and Applications
  • Citing Chapter
  • January 1991

... transition during laser diode excitation is reflected by drop of the yield of the dimer fluorescence band at 910 nm as a result of loss of excitable P (Fig. 4a). The phenomenon is similar to characteristic changes of bacteriochlorophyll fluorescence yield (Clayton 1966;Osváth et al. 1996) that has gained a wide field of interest and applications (Koblizek et al. 2005;Kocsis et al. 2010;Asztalos et al. 2012;Kis et al. 2014). The rate constant of decay of the fluorescence yield is controlled by the intensity of the laser diode. ...

Electron transfer in reaction centers of Rhodobacter sphaeroides and Rhodobacter capsulatus monitored by fluorescence of the bacteriochlorophyll dimer
  • Citing Article
  • January 1996

Photosynthesis Research

... The use of scatterer substitutes with an ultra-short fluorescence lifetime and emission spectrum overlapping sample fluorescence has an advantage over scatterers because it does not require the change of filters on the observation path. Although there is a large library with lifetime standards [6][7][8][9][10][11], only a limited number of standards with ultra-short and negligible fluorescence lifetimes are available, which can substitute the use of scatterer [12][13][14][15][16]. During our recent study on fluorescence properties of food/cosmetics azo dyes [17] we have realized that some of them have remarkable short lifetimes in low viscous solutions and can effectively be used as a substitute for scatterer. ...

Picosecond fluorescence lifetime standards for frequency- and time-domain fluorescence
  • Citing Article
  • June 1991

Journal of Fluorescence

... measured in a large range of temperatures (Milano et al. 2007; Trotta et al. 2004). RC incorporated in 1,2-diacyl-sn- glycero-3-phospho-(1-rac-glycerol) (PG) vesicles in the presence of different quinone pool size have been used to measure the heterogeneous rate constant for the redox reactions in scanning electrochemical microscopy experiments (Longobardi et al. 2006). ...

Protein/lipid interaction in bacterial photosynthetic reaction center: The role of phosphatidylcholine and phosphatidylglycerol in charge stabilization

... For an efficient conversion of light energy into the form of energy-rich molecules such as ATP, the involved membrane proteins have to insert in correct orientation into the membrane. It is not trivial to control the orientation of the membrane proteins in the course of the insertion and to increase their (directed) integration efficiency into the membranes of artificial vesicles, since the reconstitution of most membrane proteins in vitro occurs in random orientation [17,[97][98][99][100][101][102][103]. ...

Protein/lipid interaction in bacterial photosynthetic reaction center: the role of phosphatidylcholine and phosphatidylglycerol in charge stabilization
  • Citing Article
  • January 2004

... Alternatively, algorithms are available that permit the determination of the initial anisotropy in the absence of rotational diffusion (r o ), the rotational correlation times ( i ), and the amplitudes of the total anisotropy loss associated with each rotational correlation time (r 0 g i ), as previously described in detail (Yao et al., 1994;Lakowicz et al., 1985Lakowicz et al., , 1991aJohnson and Faunt, 1992). In all cases, the transforms (i.e., N and D ) can be readily modified to take into account a heterogeneous solution of CaM that contains two major structural conformers (i.e., unoxidized CaM and CaM ox ), where (2) and ...

Frequency-domain fluorescence spectroscopy: instrumentation and applications to the biosciences

Proceedings of SPIE - The International Society for Optical Engineering

... -Please order a reprint rather than making your own copy. laboratory [24,25], which extends it to anisotropy decays with multiple excitation wavelengths and quencher concentrations. ...

Enhanced resolution of anisotropic rotational diffusion by multi-wavelength frequency-domain fluorometry and global analysis
  • Citing Article
  • April 1987

Chemical Physics Letters