Frank Friedrich's research while affiliated with Karlsruhe Institute of Technology and other places

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Publications (22)


XML Treatment for Milesina magnusiana
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March 2019

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20 Reads

Ben Bubner

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Frank Friedrich

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table 1 . Primers and PCR conditions.
ITS Phylogram of 11 Milesina species (excluding M. magnusiana). The phylogram is based on a 733-bp alignment. A Maximum Likelihood (ML) tree is shown with support values for ML, Bayesian Inference (BI) and Neighbour Joining (NJ), in the order ML/BI/NJ. Support values are presented when they are above 50 (ML, NJ) or 0.5 (BI). The host is indicated in brackets. Milesina specimens without species designation (host Abies alba) are not colour-coded. For comparison, several sequences were included from closely related genera. They were all newly generated within the GBOL project, except the GenBank sequences for Cronartium spp. The drawings on the right side present the typical arrangement of spines and germ pores (grey dots) on the Milesina urediniospores.
table 2 . Milesina specimens: herbarium, lab and GenBank accession numbers.
Phylograms of supplementary barcodes. The nad6 phylogram is based on a 550 bp alignment, the 28S phylogram on a 680 bp alignment. The technical description is the same as for Figure 1. All Milesina specimens from Figure 1 were attempted to sequence for the supplementary barcodes. Only the shown specimens resulted in sequences. The non-Milesina species were altered depending on availability. No GenBank sequences were included and the genus Chrysomyxa was replaced by Pucciniastrum.
Deviations from the consensus ITS sequence of section Milesina. The first line indicates the nucleotide positions in base pairs, the second line the consensus sequence. The order of specimens is as shown in Figure 1. “Milesina sp” denotes specimens from Abies alba. Deviations for single specimens can be found at 5 positions. All specimens of M. blechni and M. woodwardiana deviate at position 381 from M. whitei and kriegeriana.

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Species identification of European forest pathogens of the genus Milesina (Pucciniales) using urediniospore morphology and molecular barcoding including M. Woodwardiana sp. Nov.

March 2019

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489 Reads

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17 Citations

Mycokeys

Mycokeys

Species of rust fungi of the genus Milesina (Pucciniastraceae, Pucciniales) are distributed mainly in northern temperate regions. They host-alternate between needles of fir ( Abies spp.) and fronds of ferns (species of Polypodiales). Milesina species are distinguished based on host taxonomy and urediniospore morphology. In this study, 12 species of Milesina from Europe were revised. Specimens were examined by light and scanning electron microscopy for urediniospore morphology with a focus on visualising germ pores (number, size and position) and echinulation. In addition, barcode loci (ITS, nad6, 28S) were used for species delimitation and for molecular phylogenetic analyses. Barcodes of 72 Milesina specimens were provided, including 11 of the 12 species. Whereas urediniospore morphology features were sufficient to distinguish all 12 Milesina species except for 2 ( M.blechni and M.kriegeriana ), ITS sequences separated only 4 of 11 species. Sequencing with 28S and nad6 did not improve species resolution. Phylogenetic analysis, however, revealed four phylogenetic groups within Milesina that also correlate with specific urediniospore characters (germ pore number and position and echinulation). These groups are proposed as new sections within Milesina (sections Milesina , Vogesiacae M. Scholler & Bubner, sect. nov. , Scolopendriorum M. Scholler & Bubner, sect. nov. and Carpaticae M. Scholler & Bubner, sect. nov. ). In addition, Milesinawoodwardiana Buchheit & M. Scholler, sp. nov. on Woodwardiaradicans , a member of the type section Milesina, is newly described. An identification key for European Milesina species, based on urediniospore features, is provided.









Citations (2)


... Phylogenetic analysis LSU and ITS sequences were used to reconstruct the phylogenetic position of the IHLR taxon observed across the southeastern United States, notably resolving its position within the genus Melampsoridium. Sequences obtained in this study and voucher sequences from previously published work (Liang et al., 2006;McKenzie et al., 2013;Bubner et al., 2019) were aligned using the MUSCLE (Edgar, 2004) plugin for GENEIOUS 10. Sequences were visually edited to treat ambiguities and sequencing errors. ...

Reference:

Ironwood/hophornbeam leaf rust, an emergent disease across the southeastern United States affiliated to Melampsoridium asiaticum
Species identification of European forest pathogens of the genus Milesina (Pucciniales) using urediniospore morphology and molecular barcoding including M. Woodwardiana sp. Nov.
Mycokeys

Mycokeys

... Anzahl und Verteilung der Keimporen der Urediniosporen bei Rostpilzen auf Gräsern sind bereits von CUMMINS (1956) als wichtiges Bestimmungs-und Artmerkmal bei Grasrosten erkannt worden. In diesem Beitrag testen wir mit dem Ziel der schnellen Artbestimmung Keimporenmerkmale mit Hilfe eines einfachen lichtmikroskopischen Phasenkontrastverfahrens, das bereits bei anderen Rostpilzgruppen (SCHOLLER et al., 2014, BUBNER et al., 2019 ...

Tranzschelia in the Americas revisited: Two new species and notes on the Tranzschelia thalictri complex