Fatima Farhana's research while affiliated with Nagasaki University and other places

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Publications (4)


Identification of a novel transcript of Abr during osteoclast differentiation. A Schematic representation of mouse Abr transcripts. B The mRNA expression of Abr in osteoclasts was analyzed by PCR in RAW-D cells with 100 ng/mL RANKL. C Determination of the Abr transcript expressed in osteoclasts. The mRNA expression of Abr during osteoclast differentiation was measured by real-time PCR in RAW-D cells with 100 ng/mL RANKL
Knockdown of Abr suppresses osteoclast formation, the resorption area, and osteoclast-marker gene expression. A Knockdown efficiency of Abr was evaluated by measuring the mRNA levels. Cells were transfected with control or Abr-specific siRNA (720 ng/μL) in the presence of RANKL (100 ng/mL) for 1–3 days. *P < 0.05; **P < 0.01; compared with the control cells. B TRAP staining of control and Abr-knockdown osteoclasts. Control and Abr-depleted RAW-D cells were stimulated with RANKL (100 ng/mL) for 3 days. The cells were fixed and stained for TRAP. Scale bar, 50 μm. C. The number of TRAP-positive multinucleated cells (MNCs) in control and Abr-knockdown cells was counted on the indicated day. **P < 0.01, compared with control cells. D Bone resorption area of control and Abr-knockdown osteoclasts. RAW-D cells were seeded onto Osteo Assay Stripwell Plates with RANKL (500 ng/mL) for 10 days. Photographs of the bone resorption area of each osteoclast are shown. Scale bar, 50 μm. E The resorption area was determined using Image J software. The data are represented as mean ± SD of values from three independent experiments. *P < 0.05, compared with control cells. F Control and Abr-knockdown RAW-D cells were cultured with RANKL (100 ng/mL) for 1–3 days. After the isolation of mRNA, RT-PCR was performed. *P < 0.05, compared with control cells. G Western blot analysis of Abr-knockdown RAW-D cells that were cultured with RANKL (100 ng/mL) for 1–3 days. The cultured cells were harvested on the indicated day and lysates were subjected to western blot analysis with specific antibodies, such as NFATc1, Src, Cathepsin K, Vinclin, LIMK, RhoA and GAPDH (control)
Overexpression of Abr enhances osteoclast formation, the resorption area, and osteoclast-marker gene expression. A Quantitative RT-PCR analysis of Abr mRNA expression levels in RAW-D cells expressing GFP or GFP-Abr. The data are represented as mean ± SD of values from five independent experiments. **P < 0.01, compared with control cells. B Western blot analysis of RAW-D cells expressing GFP or GFP-AbrV3. The cultured cells were harvested on day 3 and lysates were subjected to western blot analysis with anti-GFP or anti-GAPDH antibodies. C. TRAP staining of control and Abr-overexpressing osteoclasts. Control and Abr-overexpressing RAW-D cells were stimulated with RANKL (100 ng/mL) for 3 days. The cells were fixed and stained for TRAP. Scale bar, 50 μm. D. The number of TRAP-positive multinucleated cells (MNCs) in control and Abr-overexpressing cells was counted on the indicated day. **P < 0.01; compared with the control cells. E. Total nucleus number of TRAP-positive multinucleated osteoclasts, but not TRAP-negative mononucleated cells following a 3 days culture, was counted and classified per viewing field. F. Bone resorption area of control and Abr-overexpressing osteoclasts. RAW-D cells were seeded onto Osteo Assay Stripwell Plates with RANKL (500 ng/mL) for 10 days. Photographs of the bone resorption area of each osteoclast. Scale bar, 50 μm. G. The resorption area was determined using Image J software. The data are represented as mean ± SD of values from three independent experiments. *P < 0.05, compared with control cells. H. Control and Abr-overexpressing RAW-D cells were cultured with RANKL (100 ng/mL) for 3 days. After the isolation of mRNA, RT-PCR was performed. **P < 0.01, compared with control cells. I. Western blot analysis of Abr-overexpressing RAW-D cells that were cultured with RANKL (100 ng/mL) for 1–3 days. The cultured cells were harvested on the indicated day and lysates were subjected to western blot analysis with specific antibodies, such as NFATc1, Src, Cathepsin K, Vinclin, LIMK, RhoA and GAPDH (control)
Abr overexpression increases lamellipodia formation, and well-developed actin in osteoclasts. A Phase-contrast microscopic observation of control and Abr-overexpressing osteoclasts, which were stimulated with RANKL (100 ng/mL) for 3 days. Scale bar, 30 μm. B and C Confocal microscopic analysis of control and Abr-overexpressing osteoclasts, which were stimulated with RANKL (100 ng/mL) for 3 days, were stained with phalloidin (magenta) single (B) and phalloidin (magenta) and DAPI (blue) double (C). Scale bars, (B): 50 μm (control, and Abr-overexpressing); C 50 μm (control) and 20 μm (Abr-overexpressing). D. Western blot analysis of Abr-overexpressing RAW-D cells that were cultured with RANKL (100 ng/mL) for 2–3 days. The cultured cells were harvested on the indicated day and lysates were subjected to western blot analysis with specific antibodies, such as Rac1/2/3, Arp2, p-cofilin, and GAPDH (control)
Identification of poly (ADP-ribose) glycohydrolase as an Abr-interacting protein in mouse RAW-D derived osteoclasts. A Western blot analysis of immunoprecipitation (IP) experiments with GFP antibody in RAW-D cells expressing GFP protein only (GFP Cont) and Abr-tagged with GFP (GFP AbrV3). Cell lysates or IP samples using a GFP antibody were subjected to SDS-PAGE followed by western blotting with antibodies against RhoA, Rac1/2/3, and Cdc42. B CBB staining of Abr-interacting proteins. Immunoprecipitation (IP) was performed using beads with GFP antibody in RAW-D cells expressing GFP protein only (mock) or Abr-tagged with GFP. The eluates (same protein amounts) were subjected to SDS-PAGE detected by CBB staining. C. Western blot analysis of immunoprecipitation (IP) experiments with GFP antibody in RAW-D cells expressing GFP protein only (GFP Cont) or Abr-tagged with GFP (GFP AbrV3). Cell lysates or IP samples using a GFP antibody were subjected to SDS-PAGE followed by western blotting with a PARG-specific antibody
Abr, a Rho-regulating protein, modulates osteoclastogenesis by enhancing lamellipodia formation by interacting with poly(ADP-ribose) glycohydrolase
  • Article
  • Publisher preview available

July 2023

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26 Reads

Molecular Biology Reports

Fatima Farhana

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Yu Koyanagi

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Background Osteoclasts are multinucleated bone-resorbing cells formed by the fusion of monocyte/macrophage lineage. During osteoclast differentiation, Rho GTPases are involved in various processes, including cell migration, adhesion, and polarity. However, the role of Rho-regulatory molecules in the regulation of osteoclast differentiation remains unclear. In this study, among these genes, we focused on active breakpoint cluster region-related (Abr) protein that is a multifunctional regulator of Rho GTPases. Methods and results We examined using knockdown and overexpression experiments in RANKL-stimulated RAW-D macrophages whether Abr regulates osteoclast differentiation and cell morphology. We observed an increase in Abr expression during osteoclast differentiation and identified expression of a variant of the Abr gene in osteoclasts. Knockdown of Abr suppressed osteoclast differentiation and resorption. Abr knockdown markedly inhibited the expression of osteoclast markers, such as Nfatc1, c-fos, Src, and Ctsk in osteoclasts. Conversely, overexpression of Abr enhanced the formation of multinucleated osteoclasts, bone resorption activity, and osteoclast marker gene expression. Moreover, Abr overexpression accelerated lamellipodia formation and induced the formation of well-developed actin in osteoclasts. Importantly, the Abr protein interacted with poly(ADP-ribose) glycohydrolase (PARG) and Rho GTPases, including RhoA, Rac1/2/3, and Cdc42 in osteoclasts. Conclusions Taken together, these results indicate that Abr modulates osteoclastogenesis by enhancing lamellipodia formation via its interaction with PARG.

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Abr, a Rho-regulating protein, modulates osteoclastogenesis by enhancing lamellipodia formation by interacting with poly(ADP-ribose) glycohydrolase

May 2023

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45 Reads

Background: Osteoclasts are multinucleated bone-resorbing cells formed by the fusion of monocyte/macrophage lineage. During osteoclast differentiation, Rho GTPases are involved in various processes, including cell migration, adhesion, and polarity. However, the role of Rho-regulatory molecules in the regulation of osteoclast differentiation remains unclear. In this study, among these genes, we focused on active breakpoint cluster region-related (Abr) protein that is a multifunctional regulator of Rho GTPases. Methods and Results: We examined using knockdown and overexpression experiments in RANKL-stimulated RAW-D macrophages whether Abr regulates osteoclast differentiation and cell morphology. We observed an increase in Abr expression during osteoclast differentiation and identified expression of a variant of the Abrgene in osteoclasts. Knockdown of Abrsuppressed osteoclast differentiation and resorption. Abr knockdown markedly inhibited the expression of osteoclast markers, such as Nfatc1, c-fos, Src, and Ctsk in osteoclasts. Conversely, overexpression of Abr enhanced the formation of multinucleated osteoclasts, bone resorption activity, and osteoclast marker gene expression. Moreover, Abr overexpression accelerated lamellipodia formation and induced the formation of well-developed actin in osteoclasts. Importantly, the Abr protein interacted with poly(ADP-ribose) glycohydrolase (PARG) and Rho GTPases, including RhoA, Rac1/2/3, and Cdc42 in osteoclasts. Conclusions: Taken together, these results indicate that Abr modulates osteoclastogenesis by enhancing lamellipodia formation via its interaction with PARG.


NLRP3 Inflammasome Negatively Regulates RANKL-Induced Osteoclastogenesis of Mouse Bone Marrow Macrophages but Positively Regulates It in the Presence of Lipopolysaccharides

May 2022

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76 Reads

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12 Citations

International Journal of Molecular Sciences

In inflammatory bone diseases such as periodontitis, the nucleotide-binding oligomerization domain, leucine-rich repeat, and pyrin domain-containing 3 (NLRP3) inflammasome accelerates bone resorption by promoting proinflammatory cytokine IL-1β production. However, the role of the NLRP3 inflammasome in physiological bone remodeling remains unclear. Here, we investigated its role in osteoclastogenesis in the presence and absence of lipopolysaccharide (LPS), a Gram-negative bacterial component. When bone marrow macrophages (BMMs) were treated with receptor activator of nuclear factor-κB ligand (RANKL) in the presence of NLRP3 inflammasome inhibitors, osteoclast formation was promoted in the absence of LPS but attenuated in its presence. BMMs treated with RANKL and LPS produced IL-1β, and IL-1 receptor antagonist inhibited osteoclastogenesis, indicating IL-1β involvement. BMMs treated with RANKL alone produced no IL-1β but increased reactive oxygen species (ROS) production. A ROS inhibitor suppressed apoptosis-associated speck-like protein containing a caspase-1 recruitment domain (ASC) speck formation and NLRP3 inflammasome inhibitors abrogated cytotoxicity in BMMs treated with RANKL, indicating that RANKL induces pyroptotic cell death in BMMs by activating the NLRP3 inflammasome via ROS. This suggests that the NLRP3 inflammasome promotes osteoclastogenesis via IL-1β production under infectious conditions, but suppresses osteoclastogenesis by inducing pyroptosis in osteoclast precursors under physiological conditions.


Potentials of natural antioxidants from plants as antiosteoporotic agents

January 2022

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30 Reads

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8 Citations

Studies in Natural Products Chemistry

In osteoporosis, the density and quality of bone are reduced and become more fragile, with a significantly increased risk of fracture. Living tissue of bone undergoes continuous dynamic changes maintaining homeostasis by a delicate balance between osteoclasts and osteoblasts. Old bone is removed by osteoclasts (resorption), while new bone is added to the skeleton by osteoblasts (bone formation); an imbalance between these factors increases the risk of osteoporosis. Differentiation of osteoclasts and osteoblasts is strictly regulated by multiple cytokines, such as IL-1, IL-6, TNF-α, and TGF-β. Moreover, monocyte/macrophage colony stimulating factor and receptor activator of nuclear factor κB ligand induce osteoclast differentiation. In addition to these cytokines, it has become clear that reactive oxygen species regulate the differentiation of osteoclasts and osteoblasts. Antioxidant phytochemicals like carotenoids, polyphenols, and organosulfur compounds have been found to reduce the risk of oxidative stress-related diseases, such as cancer, arteriosclerosis, and osteoporosis. We focus on phytochemicals as antiosteoporotic agents in osteoporosis, and their antioxidative role via nuclear factor erythroid–derived related factor 2/Kelch-like ECH-associated protein pathway.

Citations (2)


... LPS-induced pyroptosis in bone marrow macrophages (BMMs), resulted in the secretion of the inflammatory factor IL-1b, which promoted osteoclast differentiation and increased bone resorption. However, osteoclast differentiation could be suppressed by inflammasome inhibitors (MCC950 and Z-YVAD-FMK) (63). Research has also indicated that the occurrence of pyroptosis in BMDMs might stimulate the secretion of IL-1 b, thereby promoting the differentiation and maturation of osteoclasts (64). ...

Reference:

Pyroptosis mediates osteoporosis via the inflammation immune microenvironment
NLRP3 Inflammasome Negatively Regulates RANKL-Induced Osteoclastogenesis of Mouse Bone Marrow Macrophages but Positively Regulates It in the Presence of Lipopolysaccharides

International Journal of Molecular Sciences

... Ferulic and rosmarinic acid were absent in the HPH and US treated samples. Researchers have reported that rosmarinic acid is an ester of caffeic acid (Sakai, Farhana, Yamaguchi & Tsukuba, 2022) and application of HPH and US in tamarillo may have caused hydrolysis of the ester linkages. Like rosmarinic acid, ferulic acid also gets converted to caffeic acid (Sakai et al., 2022). ...

Potentials of natural antioxidants from plants as antiosteoporotic agents
  • Citing Chapter
  • January 2022

Studies in Natural Products Chemistry