Denis Lepage's research while affiliated with Bird Studies Canada and other places

We present a complete, time-scaled, evolutionary tree of the world’s bird species. This tree unites phylogenetic estimates for 9,239 species from 262 studies published between 1990 and 2024, using the Open Tree synthesis algorithm. The remaining species are placed in the tree based on curated taxonomic information. The tips of this complete tree are aligned to the species in the Clements Taxonomy used by eBird and other resources, and cross-mapped to other taxonomic systems including the Open Tree of Life (Open Tree), National Center for Biotechnology Information (NCBI), and Global Biodiversity Information Facility (GBIF). The total number of named bird species varies between 10,824 and 11,017 across the taxonomy versions we applied (v2021, v2022 and v2023). We share complete trees for each taxonomy version. The procedure, software and data-stores we used to generate this tree are public and reproducible. The tree presented here is Aves v1.2 and can be easily updated with new phylogenetic information as new estimates are published. We demonstrate the types of large scale analyses this data resource enables by linking geographic data with the phylogeny to calculate the regional phylogenetic diversity of birds across the world. We will release updated versions of the phylogenetic synthesis and taxonomic translation tables annually. The procedure we describe here can be applied to developing complete phylogenetic estimates for any taxonomic group of interest. Significance statement Birds are charismatic - well loved, and highly studied. Many new phylogenies elucidating avian birds evolutionary relationships are published every year. We have united phylogenetic estimates from hundreds of studies to create a complete evolutionary tree of all birds. While a variety of resources aggregate huge collections of trait, behavior and location data for birds, previously the barriers to linking data between these data resources and bird evolutionary history have limited the opportunities to do exciting large scale analyses. We have bridged that gap, and developed a system that allows us to easily update our understanding of bird evolution as new estimates are generated. We share a workflow and the software needed to create a complete evolutionary tree for any group.

The cover image is based on the Letter AVONET: morphological, ecological and geographical data for all birds by Tobias et al., https://doi.org/10.1111/ele.13898. The sword‐billed hummingbird (Ensifera ensifera) is exquisitely adapted to its trophic niche as an aerial pollinator of flowerings plants (angiosperms) in the high Andes. A new global dataset of detailed ecomorphological traits for all birds offers a resource with numerous potential uses in ecology, evolution, and conservation biology. Image Credit: Cover Image © Oliver Krüger. Reproduced with permission.

Functional traits offer a rich quantitative framework for developing and testing theories in evolutionary biology, ecology and ecosystem science. However, the potential of functional traits to drive theoretical advances and refine models of global change can only be fully realised when species-level information is complete. Here we present the AVONET dataset containing comprehensive functional trait data for all birds, including six ecological variables, 11 continuous morphological traits, and information on range size and location. Raw morphological measurements are presented from 90,020 individuals of 11,009 extant bird species sampled from 181 countries. These data are also summarised as species averages in three taxonomic formats, allowing integration with a global phylogeny, geographical range maps, IUCN Red List data and the eBird citizen science database. The AVONET dataset provides the most detailed picture of continuous trait variation for any major radiation of organisms, offering a global template for testing hypotheses and exploring the evolutionary origins, structure and functioning of biodiversity.

National parks often serve as a cornerstone for a country’s species and ecosystem conservation efforts. However, despite the protection these sites afford, climate change is expected to drive a substantial change in their bird assemblages. We used species distribution models to predict the change in environmental suitability (i.e., how well environmental conditions explain the presence of a species) of 49 Canadian national parks during summer and winter for 434 bird species under a 2°C warming scenario, anticipated to occur in Canada around the mid-21st century. We compared these to existing species distributions in the 2010s, and classified suitability projections for each species at each park as potential extirpation, worsening, stable, improving, or potential colonisation. Across all parks, and both seasons, 70% of the projections indicate change, including a 25% turnover in summer assemblages and 30% turnover in winter assemblages. The majority of parks are projected to have increases in species richness and functional traits in winter, compared to a mix of increases and decreases in both in summer. However, some changes are expected to vary by region, such as Arctic region parks being likely to experience the most potential colonisation, while some of the Mixedwood Plains and Atlantic Maritime region parks may experience the greatest turnover and potential extirpation in summer if management actions are not taken to mitigate some of these losses. Although uncertainty exists around the precise rate and impacts of climate change, our results indicate that conservation practices that assume stationarity of environmental conditions will become untenable. We propose general guidance to help managers adapt their conservation actions to consider the potentially substantive changes in bird assemblages that are projected, including managing for persistence and change.

Waterbirds are often used as indicators of ecosystem function across broad spatial and temporal scales. Resolving which species are declining and the ecological characteristics they have in common can offer insights into ecosystem changes and their underlying mechanisms. Using 20 years of citizen science data collected by the British Columbia Coastal Waterbird Survey, we examine species-specific trends in abundance of 50 species in the Salish Sea and 37 species along the outer Pacific Ocean coast that we considered to form the core wintering coastal bird community of British Columbia, Canada. Further, we explore whether ecological commonalities increase the likelihood of a species undergoing declines by testing the hypotheses that waterbird abundance trends are influenced by dietary specialization and migration distance to breeding grounds. Results suggest that most populations are stable (i.e., temporal trends are not significant) in both the Salish Sea (36 of 50 spp.) and Pacific coast (32 of 37 spp.) regions. Twelve species displayed significant decline trends in the Salish Sea, whereas two had significant increases. Along the Pacific coast, only three species displayed significant decline trends, and two significant increases. This result is corroborated by guild-specific trends indicating that waterbirds occupying the Salish Sea are faring significantly worse than those residing along the outer coastal regions, almost irrespective of dietary specialization or migration distance. Our results provide evidence that differential environmental pressures between the inner and outer coastal regions may be causing overall loss of wintering waterbirds within, or abundance shifts away from, the Salish Sea. Potential mechanisms responsible for these observed patterns are discussed, including environmental (e.g., climate) and human-induced (e.g., nutrient and chemical pollution) pressures. Collaborative, inter-disciplinary research priorities to help understand these mechanisms are suggested

There are currently four world bird lists referenced by different stakeholders including governments, academic journals, museums and citizen scientists. Consolidation of these lists is a conservation and research priority. In reconciling lists, care must be taken to ensure agreement in taxonomic concepts—the actual groups of individual organisms circumscribed by a given scientific epithet. Here, we compare species-level taxonomic concepts for raptors across the four lists, highlighting areas of disagreement. Of the 665 species-level raptor taxa observed at least once among the four lists, only 453 (68%) were consistent across all four lists. The Howard and Moore Checklist of the Birds of the World contains the fewest raptor species (528), whereas the International Ornithological Community World Bird List contains the most (580) and these two lists are in the most disagreement. Of the disagreements, 67% involved owls, and Indonesia was the country containing the most disagreed upon species (169). Finally, we calculated the amount of species-level agreement across lists for each avian order and found raptor orders spread throughout the rankings of agreement. Our results emphasize the need to reconcile the four world bird lists for all avian orders, highlight broad disagreements across lists and identify hotspots of disagreement for raptors, in particular.

851 currently recognized species after filtering out all changes after 1981, including 17 extralimital species. Includes a count and list of taxonomic concepts associated with each name, the ‘trajectory’ of changes (the sequence of additions, deletions, renames, lumps and splits) we know about associated with this name or its synonyms and in which dataset this name and its synonyms were first added. The remaining columns are from the 2016 Checklist of North and Middle American Birds, downloaded from http://checklist.aou.org on October 3, 2016. Extralimital species, i.e. those involved in lumps and splits but not found within the geographical area of the checklist, have ‘NA’ in all higher taxonomy columns and were not present in the 2016 Checklist. (CSV)

While studies of taxonomy usually focus on species description, there is also a taxonomic correction process that retests and updates existing species circumscriptions on the basis of new evidence. These corrections may themselves be subsequently retested and recorrected. We studied this correction process by using the Check-List of North and Middle American Birds, a well-known taxonomic checklist that spans 130 years. We identified 142 lumps and 95 splits across sixty-three versions of the Check-List and found that while lumping rates have markedly decreased since the 1970s, splitting rates are accelerating. We found that 74% of North American bird species recognized today have never been corrected (i.e., lumped or split) over the period of the checklist, while 16% have been corrected exactly once and 10% have been corrected twice or more. Since North American bird species are known to have been extensively lumped in the first half of the 20th century with the advent of the biological species concept, we determined whether most splits seen today were the result of those lumps being recorrected. We found that 5% of lumps and 23% of splits fully reverted previous corrections, while a further 3% of lumps and 13% of splits are partial reversions. These results show a taxonomic correction process with moderate levels of recorrection, particularly of previous lumps. However, 81% of corrections do not revert any previous corrections, suggesting that the majority result in novel circumscriptions not previously recognized by the Check-List. We could find no order or family with a significantly higher rate of correction than any other, but twenty-two genera as currently recognized by the AOU do have significantly higher rates than others. Given the currently accelerating rate of splitting, prediction of the end-point of the taxonomic recorrection process is difficult, and many entirely new taxonomic concepts are still being, and likely will continue to be, proposed and further tested.

List of AOU checklist updates with authors and estimated counts of recognized species. (CSV)