Bradley E. Treeby's research while affiliated with University College London and other places

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Publications (180)


Potential lateral (red dotted line) and posterior (black solid line) ultrasonic approaches to the cervical spinal cord at the C5/C6 level, viewed from a (a) superior, (b) lateral, and (c) posterior view. Mesh generated from sub_verse651 (F, 37) (Liebl 2021).
The 3D k-Plan transducer viewer and automatic mesh-generating software was used to place the transducer to target the spinal cord while minimizing geometric intersection of the element paths with the spine. (a) Superior and (b) lateral views of a posterior approach target (black circle) and lateral approach target (red square) at the C5/C6 level of the sub_verse651 spine. (c) and (d) the source posterior approach, and (e) and (f) the lateral approach. Array elements (13.34 mm in diameter) help to give scale context to these 3D figures.
The simulated free-field spatial peak time averaged intensity (I SPTA) and total treatment time was below the reported threshold for damage in preclinical studies. Adapted from (Xu et al 2024). CC BY 4.0.
The mean and standard deviation (STD) in Hounsfield Units (HU) were obtained from air, liver, rib cortical bone, and skull cortical bone regions of interest for (a) sub_verse549 (F, 48), (b) sub_verse599 (M, 58), (c) sub_verse618 (M, 28), and (d) sub_verse651 (F, 37) in the VerSe 2020 dataset (Liebl et al 2021). The HU values are then plotted against mean literature density values and standard deviations (Engineering Toolbox Wydra and Gr Maev 2013, Hasgall et al 2015).
CT data from the VerSe 2020 dataset (Liebl et al 2021) were used to generate the simulation domains. The (a) CT image, (b) spine segmentation, (c) soft tissue segmentation, (d) density (see figure 4), (e) sound speed (Xu and O’Reilly 2022), (f) attenuation coefficient (Pichardo et al 2010), (g) thermal conductivity and (h) specific heat capacity (Hasgall et al 2015) of a transverse slice through the C5/C6 region of the sub_verse651 (F, 37) spine.

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Strategies and safety simulations for ultrasonic cervical spinal cord neuromodulation
  • Article
  • Full-text available

June 2024

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19 Reads

Physics in Medicine & Biology

Physics in Medicine & Biology

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Sven Bestmann

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Bradley E Treeby

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Objective. Focused ultrasound spinal cord neuromodulation has been demonstrated in small animals. However, most of the tested neuromodulatory exposures are similar in intensity and exposure duration to the reported small animal threshold for possible spinal cord damage. All efforts must be made to minimize the risk and assure the safety of potential human studies, while maximizing potential treatment efficacy. This requires an understanding of ultrasound propagation and heat deposition within the human spine. Approach. Combined acoustic and thermal modelling was used to assess the pressure and heat distributions produced by a 500 kHz source focused to the C5/C6 level via two approaches (a) the posterior acoustic window between vertebral posterior arches, and (b) the lateral intervertebral foramen from which the C6 spinal nerve exits. Pulse trains of fifty 0.1 s pulses (pulse repetition frequency: 0.33 Hz, free-field spatial peak pulse-averaged intensity: 10 W cm⁻²) were simulated for four subjects and for ±10 mm translational and ±10∘ rotational source positioning errors. Main results. Target pressures ranged between 20%–70% of free-field spatial peak pressures with the posterior approach, and 20%–100% with the lateral approach. When the posterior source was optimally positioned, peak spine heating values were below 1 ∘C, but source mispositioning resulted in bone heating up to 4 ∘C. Heating with the lateral approach did not exceed 2 ∘C within the mispositioning range. There were substantial inter-subject differences in target pressures and peak heating values. Target pressure varied three to four-fold between subjects, depending on approach, while peak heating varied approximately two-fold between subjects. This results in a nearly ten-fold range between subjects in the target pressure achieved per degree of maximum heating. Significance. This study highlights the utility of trans-spine ultrasound simulation software and need for precise source-anatomy positioning to assure the subject-specific safety and efficacy of focused ultrasound spinal cord therapies.

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Figure 2: (a) Focal intensity for the transcranial ultrasound system in the axial (top) and lateral (bottom) planes at the geometric focus. (b) Relative focal pressure and -3dB focal volume as a function of lateral and axial steering position. The values are normalised to the focal pressure and focal volume at the geometric centre of the helmet (position shown with a + symbol). The highly targeted focus is maintained over a very wide steering range. (c) Planning images showing the T1-weighted MR (grayscale), CT image thresholded to show the skull (green), functional activation from visual task (purple), statistical segmentation of the lateral geniculate nucleus (LGN) (blue), and -6 dB volume of the simulated target pressure (yellow/red). (d) Schematic of the visual system showing the connections between the left and right LGN and the primary visual cortices (adapted from 'Human Visual Pathway', retrieved from https://commons.wikimedia.org/wiki/File:Human_visual_pathway.svg).
Figure 3: Ultrasound stimulation to the left LGN during a visual task leads to significantly increased activity in the ipsilateral occipital cortex compared with sham. (a) Group mean visually-related activation (green) is evident in the bilateral LGN and associated primary visual cortices during the task. Stimulation of the left (highlighted) LGN results in significantly increased task-related activity in a spatially-precise region within the directly connected ipsilateral visual cortex. No changes in activity are observed in the contralateral visual cortex (Mixed-effects, cluster-corrected with a threshold of z=3.1, p<0.05, red-yellow). (b) Difference in task-related activity (difference in z-scored BOLD task-related change) during LGN stimulation compared with sham within the peak task-related activation region in (a) for each participant. (c) Difference in task-related activity (difference in z-scored BOLD task-related change) during LGN stimulation (left) and MDN stimulation (right) compared with sham within the peak task-related activation region for each run separately. (d) The peak change in task-related activity during LGN ultrasound stimulation was highly similar across individual participants. Green: mean task-related activation, white: group mean results (as in (a)). (e) Difference in task-related activity (difference in z-scored BOLD task-related change) during LGN stimulation for each run, for each participant separately. Participant 5 only completed 6 runs and participant 7 11 runs.
Figure 4: Offline ultrasound stimulation to the left LGN significantly decreases task-related activity in the ipsilateral visual cortex during a visual checkerboard task early after stimulation. (a) Stimulation of the left (highlighted) LGN results in significantly decreased task-related activity in the directly connected ipsilateral visual cortex but not in the contralateral visual cortex (blue-light blue; mixed effects, z=3.1, p< 0.05). These significant areas overlap the mean cortical activation map of the occipital cortex during all task blocks (green). (b) Change in task-related activity (difference in z-scored BOLD task-related change) after LGN (left) and MDN (right) stimulation within the peak task-related activation region in (a) for each run separately. (c) The peak change in task-related activity during LGN ultrasound stimulation was highly similar across individual participants. Green: mean task-related activation, white: group mean results (as in (a)). (d) Change in task-related activity (difference in z-scored BOLD task-related change) after LGN stimulation within the peak task-related activation region in (a) for each run separately, at the early and late time points.
Ultrasound system for precise neuromodulation of human deep brain circuits

June 2024

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86 Reads

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Ioana F Grigoras

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[...]

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Bradley E Treeby

Transcranial ultrasound stimulation (TUS) has emerged as a promising technique for non-invasive neuromodulation, but current systems lack the precision to target deep brain structures effectively. Here, we introduce an advanced TUS system that achieves unprecedented precision in deep brain neuromodulation. The system features a 256-element, helmet-shaped transducer array operating at 555 kHz, coupled with a stereotactic positioning system, individualised treatment planning, and real-time monitoring using functional MRI. In a series of experiments, we demonstrate the system's ability to selectively modulate the activity of the lateral geniculate nucleus (LGN) and its functionally connected regions in the visual cortex. Participants exhibited significantly increased visual cortex activity during concurrent TUS and visual stimulation, with high reproducibility across individuals. Moreover, a theta-burst TUS protocol induced robust neuromodulatory effects, with decreased visual cortex activity observed for at least 40 minutes post-stimulation. These neuromodulatory effects were specific to the targeted LGN, as confirmed by control experiments. Our findings highlight the potential of this advanced TUS system to non-invasively modulate deep brain circuits with high precision and specificity, offering new avenues for studying brain function and developing targeted therapies for neurological and psychiatric disorders. The unprecedented spatial resolution and prolonged neuromodulatory effects demonstrate the transformative potential of this technology for both research and clinical applications, paving the way for a new era of non-invasive deep brain neuromodulation.




Review of the Low-Temperature Acoustic Properties of Water, Aqueous Solutions, Lipids, and Soft Biological Tissues

March 2024

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17 Reads

IEEE Transactions on Ultrasonics Ferroelectrics and Frequency Control

Existing data on the acoustic properties of low-temperature biological materials is limited and widely dispersed across fields. This makes it difficult to employ this information in the development of ultrasound applications in the medical field, such as cryosurgery and rewarming of cryopreserved tissues. In this review, the low-temperature acoustic properties of biological materials, and the measurement methods used to acquire them were collected from a range of scientific fields. The measurements were reviewed from the acoustic set-up to thermal methodologies for samples preparation, temperature monitoring, and system insulation. The collected data contain the longitudinal and shear velocity, and attenuation coefficient of biological soft tissues and biologically relevant substances - water, aqueous solutions, and lipids - in the temperature range down to -50°C and in the frequency range from 108 kHz to 25 MHz. The Multiple-Reflection Method (MRM) was found to be the preferred method for low-temperature samples, with a buffer-rod inserted between the transducer and sample to avoid direct contact. Longitudinal velocity changes are observed through the phase transition zone, which is sharp in pure water, and occurs more slowly and at lower temperatures with added solutes. Lipids show longer transition zones with smaller sound velocity changes; with the longitudinal velocity changes observed during phase transition in tissues lying between these two extremes. More general conclusions on the shear velocity and attenuation coefficient at low-temperatures are restricted by the limited data. This review enhance knowledge guiding for further development of ultrasound applications in low-temperature biomedical fields, and may help to increase the precision and standardisation of low-temperature acoustic property measurements.


Strategies and safety simulations for ultrasonic cervical spinal cord neuromodulation

February 2024

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29 Reads

Focused ultrasound spinal cord neuromodulation studies have demonstrated the capacity for neuromodulation of the spinal cord in small animals. The safe and efficacious translation of these approaches to human scale requires an understanding of ultrasound propagation and heat deposition within the human spine. To address this, combined acoustic and thermal modelling was used to assess the pressure and heat distributions produced by a 500 kHz source focused to the C5/C6 level of the cervical spine via two approaches a) the posterior acoustic window between vertebral posterior arches, or b) the lateral intervertebral foramen from which the C6 spinal nerve exits. Pulse trains of 150 0.1 s pulses with a pulse repetition frequency of 0.33 Hz and free-field spatial peak pulse-averaged intensity of 10 W/cm^2 were simulated for the CT volumes of four subjects and for ±10 mm translational and ±10 degrees rotational source positioning errors. Target pressures ranged between 20% and 70% of free-field spatial peak pressures with the posterior approach, and 20% and 100% with the lateral approach. When the source was optimally positioned with the posterior approach, peak spine heating values were below 1 degC, but source mis-positioning resulted in bone heating up to 4 degC. Heating with the lateral approach did not exceed 2 degC within the mispositioning range. There were substantial inter-subject differences in target pressures and peak heating values. Target pressure varied three to four-fold between subjects, depending on approach, while peak heating varied approximately twofold between subjects. This results in a nearly tenfold range in the target pressure achieved per degree of maximum heating between subjects. This study highlights the importance of developing trans-spine ultrasound simulation software for the assurance of subject-specific safety and efficacy of focused ultrasound spinal cord therapies.


ITRUSST Consensus on Standardised Reporting for Transcranial Ultrasound Stimulation

February 2024

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21 Reads

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3 Citations

As transcranial ultrasound stimulation (TUS) advances as a precise, non-invasive neuromodulatory method, there is a need for consistent reporting standards to enable comparison and reproducibility across studies. To this end, the International Transcranial Ultrasonic Stimulation Safety and Standards Consortium (ITRUSST) formed a subcommittee of experts across several domains to review and suggest standardised reporting parameters for low intensity TUS, resulting in the guide presented here. The scope of the guide is limited to reporting the ultrasound aspects of a study. The guide and supplementary material provide a simple checklist covering the reporting of: (1) the transducer and drive system, (2) the drive system settings, (3) the free field acoustic parameters, (4) the pulse timing parameters, (5) in situ estimates of exposure parameters in the brain, and (6) intensity parameters. Detailed explanations for each of the parameters, including discussions on assumptions, measurements, and calculations, are also provided.



Acoustic attenuation coefficient measurement in extreme environments: Experimental characterization of uncertainty in multiple-reflection method

October 2023

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30 Reads

The Journal of the Acoustical Society of America

Measuring acoustic properties in extreme environments, involving hazardous chemical samples or temperature above 50ºC or below 0ºC, is challenging yet crucial for understanding waveform interactions with materials, with applications in fields like non-destructive testing (NDT) and medical applications. Multiple-reflection methods (MRM), using a buffer-rod between transducer and sample, offer a solution. Yet, the impact of variables like contact force, buffer-rod size, and surface roughness on the accuracy and precision of MRM measurements remains unvalidated. To address this, we introduce a system and experiments to quantify the accuracy of measurements of acoustic attenuation coefficient. Results demonstrate the substantial impact of contact force on system accuracy and precision, reflected by a decrease in the measured attenuation coefficient at 0.5 MHz from 3.8 to 1.5dB/cm with increasing contact force. Effects of buffer-rod width were less pronounced and supported the theory that a cylindrical buffer-rod with twice the radius of the transducer is sufficient. Interestingly, surface roughness, despite being over 150 times smaller than the wavelength of the acoustic signal, influences measurement accuracy. This study illuminates the crucial role of system factors on measurement accuracy and uncertainty, which will aid optimization of measurements for diverse practical applications.


Mapping acoustic properties of tissues at low temperatures for ultrasound rewarming

October 2023

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21 Reads

The Journal of the Acoustical Society of America

Cryopreservation of large volumes of cells and tissues, followed by successful rewarming, promises to revolutionize organ transplantation by extending organ preservation times. This technology addresses a critical issue: over 6,000 individuals in the UK are awaiting organ transplants, yet an alarming 60% of donated organs go unused due to current preservation time limitations. A significant challenge lies in providing a rapid and uniform rewarming method for cryopreserved tissues. Ultrasound, capable of converting sound power into heat as it propagates through tissue, offers a promising solution. Nonetheless, before tapping into ultrasound’s potential for rewarming experiments, a fundamental understanding of the acoustic properties of tissues, which vary with temperature and during phase change, is essential. This study employs the multiple-reflection method (MRM), with buffer-rod positioned between the transducer and sample, to measure the acoustic attenuation coefficient and sound speed in biological relevant materials and the primary components of tissues, such as water and lipids, across a temperature range of 20 to −100ºC. Concurrently, the acoustic properties of commonly used cryopreservation solutions were assessed. These data will facilitate computational simulation of acoustic power delivery and the resulting temperature distributions, enabling planning and monitoring of tissue rewarming, which is critical to its success.


Citations (61)


... whereby researchers may limit their exploration of the TUS parameter space based on studies with positive 568 findings and/or those targeting similar behaviors and brain areas. Also, we and others have noted that few 569 TUS researchers, as a rule, share the full set of key parameters necessary for meta-analysis and secondary 570 hypothesis testing, even though the ITRUSST community has devised a list of parameters that all TUS 571 studies should aim to report (Martin et al., 2024). Thus, we had to simulate the derated ISPTA values in the 572 brain, warranting caution when interpreting these results. ...

Reference:

Neuromodulation with Ultrasound: Hypotheses on the Directionality of Effects and a Community Resource
ITRUSST Consensus on Standardised Reporting for Transcranial Ultrasound Stimulation
  • Citing Article
  • February 2024

... Given the risks associated with the sensitivity of the spinal cord and the potential for heating due to the complex bony anatomy of the spine, it is crucial that a thorough safety assessment be performed prior to in vivo experiments. Many clinical studies have investigated the bioeffects of ultrasound focused to the spinal cord, and the knowledge developed from these studies may provide a starting point for developing safety standards for the spinal cord (Xu et al 2024). Our recent review has shown that the reported threshold for possible ultrasound-induced damage in the spinal cords of a variety of animals, and a range of frequencies and environmental conditions can be approximated by an exponential equation of spatial-peak time-averaged ultrasound intensity and exposure time (Xu et al 2024). ...

Safety Review of Therapeutic Ultrasound for Spinal Cord Neuromodulation and Blood–Spinal Cord Barrier Opening
  • Citing Article
  • January 2024

Ultrasound in Medicine & Biology

... The dissemination and primary standard facilities are resident in temperature-controlled laboratories and calibrations using both are carried out typically in the range 19 -21 °C. Outside of this range, temperature dependent sensitivity corrections may need to be applied [18], [31], [37]. ...

Characterisation of hydrophone sensitivity with temperature using a broadband laser-generated ultrasound source

... Previous work has shown that the incorporation of shear waves did not substantially affect pressure values within the vertebral canal (Xu 2022), but this work did not evaluate additional shear-wave induced heating within the spine. Elastic wave propagation was not simulated due to the high computational requirements needed for accurate elastic wave simulations; previous elastic transcranial simulations have used 25-60 spatial points per shear wavelength (Robertson et al 2017, Jing andLindsey 2021), while 8-10 points per longitudinal wavelength often suffices for transcranial simulation with the fluid k-Wave code (Robertson et al 2017, McDannold et al 2019, Hosseini et al 2023. ...

A Head Template for Computational Dose Modelling for Transcranial Focused Ultrasound Stimulation
  • Citing Article
  • June 2023

NeuroImage

... This differs for transducer array designs, where symmetric acoustic fields are required, such as 2-D matrix arrays [42] or sparse arrays for 3-D ultrasound tomography [6]. In the latter case, state-of-the art full wave inversion reconstruction algorithms require transducers with frequency components below 1 MHz [5]. Hence, acoustic cross-coupling effects between cells have to be considered in the design process to meet the required acoustic fields. ...

open-UST: An Open-Source Ultrasound Tomography Transducer Array System

IEEE Transactions on Ultrasonics Ferroelectrics and Frequency Control

... An electron density phantom (CIRS Model 062M) was also scanned using the same acquisition and reconstruction parameters to allow a precise calibration from Hounsfield units (HU) to mass density to be determined. 47 In the third session (and during the online stimulation sessions), participants were positioned within the water-filled helmet and images were acquired using a Siemens 3-T Prisma whole-body MRI scanner with the body coil. Before the scans were acquired, the shim volume was set manually to cover the brain but exclude the water in the helmet, and the GRE Brain shimming routine was manually iterated three times, followed by manual frequency adjustment. ...

Transcranial ultrasound simulation with uncertainty estimation
  • Citing Article
  • May 2023

JASA Express Letters

... Each pressure signal had a duration of 25 µs (N t = 1024 samples). In order to generate the sinograms corresponding to the ground-truth images needed to train the proposed architecture we made use of the program j-Wave 4 Stanziola et al. (2023), which is a highly-customizable acoustics simulator based on Python and JAX. Using this tool we followed a simple approach to construct the matrix forward operator. ...

j-Wave: An open-source differentiable wave simulator
  • Citing Article
  • May 2023

SoftwareX

... [5][6][7] Furthermore, this technique is instrumental in facilitating particle manipulation [8][9][10][11] in a broad spectrum of ultrasound applications. At present, the acoustic beam is mainly manipulated by phased array ultrasonic transducers, [12][13][14][15] self-focusing mechanisms, [16][17][18] holograms, [19][20][21][22][23][24][25] etc. In contrast to conventional techniques, acoustic holography is usually fabricated by the rapidly developing three-dimensional (3D) printing technology, which allows mapping the output of the unitary transducer onto a pre-calculated phase map [19] and creating a high-fidelity ultrasound field. ...

Binary Volume Acoustic Holograms

Physical Review Applied

... This gives time for heat dissipation from hot spots that may form during each pulse. Fifty pulses and inter-pulse cooling periods (150 s total treatment time) were simulated, replicating an experimental design where a) averaging across pulses is needed in order to identify a neuromodulatory effect (Nandi et al 2023), and/or b) the neuromodulatory effects increase throughout an exposure and an extended treatment time is needed (Tseha 2023). The simulated total treatment time and free-field I SPTA was below the reported threshold for possible spinal cord damage in preclinical studies (Xu et al 2024), as shown in figure 3. ...

Ramped V1 transcranial ultrasonic stimulation modulates but does not evoke visual evoked potentials
  • Citing Article
  • February 2023

Brain Stimulation

... For larger volumes of tissue, rewarming methods that provide uniform and rapid heating are necessary. Ultrasound has demonstrated potential in this case [26,27]. ...

Experiments and simulations demonstrating the rapid ultrasonic rewarming of frozen tissue cryovials

The Journal of the Acoustical Society of America