August 2018
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30 Reads
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August 2018
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30 Reads
December 2015
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291 Reads
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19 Citations
Competing multi-photon ionization processes, some leading to the formation of double core hole states, have been examined in 4-aminophenol. The experiments used the linac coherent light source (LCLS) x-ray free electron laser, in combination with a time-of-flight magnetic bottle electron spectrometer and the correlation analysis method of covariance mapping. The results imply that 4-aminophenol molecules exposed to the focused x-ray pulses of the LCLS sequentially absorb more than two x-ray photons, resulting in the formation of multiple core holes as well as in the sequential removal of photoelectrons and Auger electrons (so-called PAPA sequences).
September 2015
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77 Reads
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1 Citation
Journal of Physics Conference Series
Ultrafast molecular dynamics can be studied using x-rays from both synchrotrons sources and x-ray free electron lasers. Synchrotron studies are limited by the 10-100 ps duration pulses to processes where the Auger lifetime can be used to probe dynamics initiated by excitation of an inner-shell electron to an antibonding orbital. The short pulses produced by x-ray free electron lasers offer the opportunity to study molecular dynamics directly with pump-probe techniques. A two-mirror x-ray split and delay device has been developed for x- ray pump - x-ray probe experiments at the soft x-ray AMO instrument at the LCLS. The device operates over a photon energy range of 250-1800 eV with a variable delay of up to 200 femtoseconds with 0.1 fs resolution.
July 2015
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146 Reads
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31 Citations
Few-photon ionization and relaxation processes in acetylene (C2H2) and ethane (C2H6) were investigated at the linac coherent light source X-ray free electron laser (FEL) at SLAC, Stanford using a highly efficient multi-particle correlation spectroscopy technique based on a magnetic bottle. The analysis method of covariance mapping has been applied and enhanced, allowing us to identify electron pairs associated with double core hole (DCH) production and competing multiple ionization processes including Auger decay sequences. The experimental technique and the analysis procedure are discussed in the light of earlier investigations of DCH studies carried out at the same FEL and at third generation synchrotron radiation sources. In particular, we demonstrate the capability of the covariance mapping technique to disentangle the formation of molecular DCH states which is barely feasible with conventional electron spectroscopy methods. © 2015 IOP Publishing Ltd and Deutsche Physikalische Gesellschaft.
April 2015
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34 Reads
Journal of Physics Conference Series
We carried out experimental and theoretical investigation of the response of a complex molecule, C60, to intense x-ray photon beam from a free-electron-laser. We show good agreement between the modelling and the experiment. Our model, which can be scaled well to larger systems, reveals femotosecond molecular dynamics details, at the level of atomic resolution, which are inaccessible directly by our experiments. Our results illustrate the variety of physical and chemical processes in the interaction between large molecules and intense x- ray pulses, including photoelectric effect, secondary ionization, recombination and inter-atomic Auger decays. The understanding of these processes has a broad impact on research that implements intense x-ray pulses.
October 2014
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14 Reads
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15 Citations
Faraday Discussions
The understanding of physical and chemical changes at an atomic spatial scale and on the time scale of atomic motion is essential for a broad range of scientific fields. A new class of femtosecond, intense, short wavelength lasers, the free electron lasers, has opened up new opportunities to investigate dynamics in many areas of science. For chemical dynamics to advance however, a rigorous, quantitative understanding of dynamical effects due to intense X-ray exposure is also required. We illustrate this point by reporting here an experimental and theoretical investigation of the interaction of C60 molecules with intense X-ray pulses, in the multiphoton regime. We also describe the potential of new available instrumentation and explore their potential impact in physical, chemical and biological sciences when they are coupled with emerging photon technologies.
June 2014
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280 Reads
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35 Citations
Molecular dynamics is an active area of research, focusing on revealing fundamental information on molecular structures and photon?molecule interaction and with broad impacts in chemical and biological sciences. Experimental investigation of molecular dynamics has been advanced by the development of new light sources and techniques, deepening our understanding of natural processes and enabling possible control and modification of chemical and biomolecular processes. Free-electron lasers (FELs) deliver unprecedented intense and short photon pulses in the vacuum ultraviolet and x-ray spectral ranges, opening a new era for the study of electronic and nuclear dynamics in molecules. This review focuses on recent molecular dynamics investigations using FELs. We present recent work concerning dynamics of molecular interaction with FELs using an intrinsic clock within a single x-ray pulse as well as using an external clock in a pump?probe scheme. We review the latest developments on correlated and coincident spectroscopy in FEL-based research and recent results revealing photo-induced interaction dynamics using these techniques. We also describe new instrumentations to conduct x-ray pump?x-ray probe experiments with spectroscopy and imaging detectors.
June 2014
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162 Reads
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137 Citations
Nature Communications
Understanding molecular femtosecond dynamics under intense X-ray exposure is critical to progress in biomolecular imaging and matter under extreme conditions. Imaging viruses and proteins at an atomic spatial scale and on the time scale of atomic motion requires rigorous, quantitative understanding of dynamical effects of intense X-ray exposure. Here we present an experimental and theoretical study of C60 molecules interacting with intense X-ray pulses from a free-electron laser, revealing the influence of processes not previously reported. Our work illustrates the successful use of classical mechanics to describe all moving particles in C60, an approach that scales well to larger systems, for example, biomolecules. Comparisons of the model with experimental data on C60 ion fragmentation show excellent agreement under a variety of laser conditions. The results indicate that this modelling is applicable for X-ray interactions with any extended system, even at higher X-ray dose rates expected with future light sources.
January 2014
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30 Reads
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1 Citation
A three-layer delay line anode detector has been used in x-ray pump x-ray probe timeresolved measurement at LCLS. We used ~10 fs long pulses to initiate and probe ultrafast dynamics in the dication of acetylene. The dynamics are discerned from the temporal evolution of multi-particle coincidences.
August 2013
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158 Reads
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22 Citations
We have investigated nonlinear processes in small molecules by x-ray photoelectron spectroscopy using the Linac Coherent Light Source free electron laser, and by simulations. The main focus of the experiments was the formation of the two-site double core-hole (tsDCH) states in the molecules CO2, N2O and N2. These experiments are described in detail and the results are compared with simulations of the photoelectron spectra. The double core-hole states, and in particular the tsDCH states, have been predicted to be highly sensitive to the chemical environment. The theory behind this chemical sensitivity is validated by the experiments. Furthermore, our simulations of the relative integrated intensities of the peaks associated with the nonlinear processes show that this type of simulation, in combination with experimental data, provides a useful tool for estimating the duration of ultra-short x-ray pulses.
... On the other hand, the EMC reconstruction procedure itself contributes specific sources of errors or uncertainty: the smearing error R S , the rotational error R T , the noise error R N , and the fluence error R F . Currently, the errors related to FXI experimental procedures are improving considerably [1,15,17], and hence we only focus on the algorithmic errors and their combinations. In summary, Smearing error R S : This error is caused by a smearing effect in the compression step, and can in fact often be the dominating one. ...
September 2015
Journal of Physics Conference Series
... On the basis of the measured fluence of the pump pulse we estimate that nearly every molecule in the focal volume is ionized. The binding energy (BE) of the carbon K-shell electrons in para-aminophenol is between 289.71 and 291.41 eV, depending on the relative position of the core-level vacancy to the nitrogen or oxygen atomic sites 47 . Ionization by the pump pulse produces slow photoelectrons with kinetic energy of ~5 eV. ...
December 2015
... In the longer term, we plan to explore also the many other natural extensions of the TDMCC formalism of AS-TRA, such as the inclusion of a Q space for the accurate description of short-range correlation [151], the inclusion of double-escape channels [152][153][154], to reproduce molecular double-ionization processes, as well as the description of multifragment systems [155][156][157][158][159] (e.g., a dissociating molecule, or a loosely bound aggregate) in terms of the TDMs of its separated components, in which the TDMs of the whole aggregate naturally factorizes, thus leading to drastic reduction in computational cost. ...
July 2015
... The measurement of the ions resulting from the ionization and fragmentation dynamics of C 60 under X-ray exposure was achieved by using a magnetic bottle spectrometer [16] at the LCLS AMO hutch. The method is described elsewhere [16]; thus, our description here is brief. ...
October 2014
Faraday Discussions
... In this paper, we perform a comprehensive analysis of radiation damage during a realistic SPI study of a ribosome macromolecule, containing 142,429 non-hydrogen atoms. For the simulation, we use the SIMEX framework 16 , with a dedicated software for modeling X-ray induced radiation damage in large finite-size samples, the tree-code-extended XMDYN tool [21][22][23] . With these codes, we estimate the minimal number of simulated molecular-dynamics realizations of the X-ray irradiated molecule (performed under typical experimental conditions) needed to reliably compute its time-integrated and realization-averaged diffraction image. ...
June 2014
Nature Communications
... Experimental setups, using low-repetition-rate intense light sources, rather work with simple ion TOF spectrometers capable of handling higher maximum signal levels, often in combination with optimized photoelectron spectrometers 17,18 . While the main purpose of these ion TOF spectrometers is the characterization of formed ions and ionic fragments according to their m/q, the respective ion kinetic energy releases can still be extracted by a careful analysis of the TOF peak shape and width 4, [19][20][21][22][23][24] . The methods used to retrieve ion kinetic energy information from the data of such experiments and the assumptions behind them are, however, seldomly explained in much detail. ...
June 2014
... The first six years using the x-rays from the LCLS, in atomic and molecular (AMO) physics, have already enabled the exploration of novel states in atoms [6][7][8][9][10][11][12][13][14], molecules [15][16][17][18][19][20][21][22][23][24][25][26][27][28] and clusters [29,32], as well as enabled the investigation of two-color studies of molecule-photon interaction dynamics [33][34][35][36][37]. These novel x-ray light sources target core electrons in molecular systems, which are highly localized around the nuclei, and provide element specific spectroscopic information. ...
November 2012
Journal of Physics Conference Series
... An increasing number of XFEL facilities are now focusing on delivering coherent (close to the Fourier transform limit) and short x-ray pulses using the so-called self-seeding technique [38], e.g., FERMI in Trieste, LCLS in Stanford, XFEL at Pohang Accelerator Laboratory, and SACLA in Japan. Moreover, application of the covariance analysis [39,40] allows us to make use of the traditional stochastic self-amplified spontaneous emission XFEL pulses [38] for the study of coherent processes with the help of statistical analysis and has been already successfully applied for XFEL experiments. As illustrated in Fig. 1, after kicking off one core-shell electron by a broadband ultrashort x-ray pulse, different coherent nuclear wave packets of the core-excited cation molecule can be created corresponding to photoelectrons of different energies; the rapid Auger decay dynamics followed will in turn depend on the nuclear wave-packet dynamics in both core-hole and final dication states. ...
August 2013
... With the advent of the newest generation of x-ray sources, double core-shell photoionization spectroscopy has been reported with unprecedented resolution either from two-photon photoelectron spectroscopy using x-ray free electron laser (X-FEL) radiation [1][2][3][4][5][6] or with single x-ray photon at synchrotron facilities. [7][8][9][10][11][12][13][14][15][16] Single-site double core hole (ssDCH or K −2 ) spectroscopy has gained special attention due to, among others, its chemical specificity and enhanced sensitivity to chemical environment when compared to single core hole (SCH) spectroscopy. ...
August 2013
... NIR radiation has been shown to successfully probe VUVor XUV-induced photodynamics, from the classic experiment of the acetylene isomerization [11][12][13][14] to the much more complex processes in thymidine [15]. In the x-ray regime, experimentalists often take advantage of the extreme intensity of the short FEL pulses, creating highly charged exotic states by multiphoton absorption that undergo destructive Coulomb explosions [16][17][18][19][19][20][21][22][23][24]]-a dynamics again very different from the evolution of a low-charge state. In contrast, in this paper we used strongly attenuated short (60 fs), soft x-ray pulses produced by a FEL to create a core-ionized state. ...
November 2012
Physical review A, Atomic, molecular, and optical physics