No full-text available
To read the full-text of this research,
you can request a copy directly from the authors.
Lipopolysaccharides of Vibrio cholerae: II. Genetics of biosynthesis
Abstract
An account of our up to date knowledge of the genetics of biosynthesis of Vibrio cholerae lipopolysaccharide (LPS) is presented in this review. While not much information is available in the literature on the genetics of biosynthesis of lipid A of V. cholerae, the available information on the characteristics and proposed functions of the corepolysaccharide (core-PS) biosynthetic genes is discussed. The genetic organizations encoding the O-antigen polysaccharides (O-PS) of V. cholerae of serogroups O1 and O139, the disease causing ones, have been described along with the putative functions of the different constituent genes. The O-PS biosynthetic genes of some non-O1, non-O139 serogroups, particularly the serogroups O37 and O22, and their putative functions have also been discussed briefly. In view of the importance of the serogroup O139, the origination of the O139 strain and the possible donor of the corresponding O-PS gene cluster have been analyzed with a view to having knowledge of (i) the mode of evolution of different serogroups and (ii) the possible emergence of pathogenic strain(s) belonging to non-O1, non-O139 serogroups. The unsolved problems in this area of research and their probable impact on the production of an effective cholera vaccine have been outlined in conclusion.
... Such examples of genes are ctxA and ctxB cholera toxin-encoded genes embedded into the integrated CTXF prophage; and tcpA, a gene of the Vibrio pathogenicity island. The strains were not part of O139 serogroup, demonstrated by the absence of genes including rstA, or wfbA of the rfb region (Fig 1C and S4 Fig) [35][36][37][38] [35][36][37][38] [ [34][35][36][37]. ...
... Such examples of genes are ctxA and ctxB cholera toxin-encoded genes embedded into the integrated CTXF prophage; and tcpA, a gene of the Vibrio pathogenicity island. The strains were not part of O139 serogroup, demonstrated by the absence of genes including rstA, or wfbA of the rfb region (Fig 1C and S4 Fig) [35][36][37][38] [35][36][37][38] [ [34][35][36][37]. ...
... Quality was illustrated by several criteria including mean depth, proportion of reference genome covered, DNA concentration, and NG50. Mapping confirmed the identification of specific virulence genes and the absence of genes implicated in important biological pathways of V. cholera, providing critical molecular epidemiological information to characterize cholera outbreaks in remote and/or unstable areas [39][40][41] [38][39][40] [39][40][41] [35][36][37]. Furthermore, successful assemblies obtained from WGS of these samples were instrumental in identifying gene context and gene organisation within reconstituted genomes. ...
Background
Global estimates for cholera annually approximate 4 million cases worldwide with 95,000 deaths. Recent outbreaks, including Haiti and Yemen, are reminders that cholera is still a global health concern. Cholera outbreaks can rapidly induce high death tolls by overwhelming the capacity of health facilities, especially in remote areas or areas of civil unrest. Recent studies demonstrated that stool specimens preserved on filter paper facilitate molecular analysis of Vibrio cholerae in resource limited settings. Specimens preserved in a rapid, low-cost, safe and sustainable manner for sequencing provides previously unavailable data about circulating cholera strains. This may ultimately provide new information to shape public policy response on cholera control and elimination.
Methodology/Principal findings
Whole genome sequencing (WGS) recovered close to a complete sequence of the V. cholerae O1 genome with satisfactory genome coverage from stool specimens enriched in alkaline peptone water (APW) and V. cholerae culture isolates, both spotted on filter paper. The minimum concentration of V. cholerae DNA sufficient to produce quality genomic information was 0.02 ng/μL. The genomic data confirmed the presence or absence of genes of epidemiological interest, including cholera toxin and pilus loci. WGS identified a variety of diarrheal pathogens from APW-enriched specimen spotted filter paper, highlighting the potential for this technique to explore the gut microbiome, potentially identifying co-infections, which may impact the severity of disease. WGS demonstrated that these specimens fit within the current global cholera phylogenetic tree, identifying the strains as the 7th pandemic El Tor.
Conclusions
WGS results allowed for mapping of short reads from APW-enriched specimen and culture isolate spotted filter papers this provided valuable molecular epidemiological sequence information on V. cholerae strains from remote, low-resource settings. These results identified the presence of co-infecting pathogens while providing rare insight into the specific V. cholerae strains causing outbreaks in cholera-endemic areas.
... However, only a single copy of IS1358 is present in the CPS locus of strain 27562, and in the S. putrefaciens CPS loci IS1358 is replaced by IS4.The prevalence of IS elements may simply be due to the intermixing of CPS regions, with the IS elements providing targets for homologous recombination rather than playing a role via transposition. At present, the role, if any, of IS elements in the transfer of polysaccharide loci in the Vibrionaceae remains unclear.Our comparative analysis of the CPS loci of strains 27562, YJ016 and CMCP6 revealed that each has strain specific polysaccharide genes surrounded by conserved regions (wza/wzb/wzc on one side and wcvA/wcvB on the other side), reminiscent of O-antigen cluster organization in V. cholerae(89,90,93,252). In V. cholerae, conserved O-antigen flanking regions may be targets for homologous recombination of exogenous loci. ...
... The structure of the lipid A core therefore needs further characterization.The remaining orfs (wbfB, C and D) found in the LPS cluster encode products of unknown function. In V. cholerae the wbf genes are part of the region determining the biosynthesis of the O139 O-antigen(90). These genes have also been found in the V. ...
... Campylobacter jejuni, as well as O-antigen diversity in S. enterica and the Vibrionaceae(85)(86)(87)(88)(89)(90)(91)(92)(93)(94)(95)(96)(97)(98).Natural genetic transformation may participate in HGT events in natural populations.transfers of polysaccharide biosynthesis genes, leading to evolution of new carbotypes. InHaemophilus influenza and Neisseria gonorrhoeae, natural transformation is dependent on the ...
... The physical and chemical characterization of the Vibrio cholerae LPS followed by an in-depth study of the genetics of its biosynthesis has recently been reviewed [1,2]. The O-Ag polysaccharide (O-PS) has figured out as an important constituent of the V. cholerae LPS. ...
... The role of CPS associated with V. cholerae of several serogroups in the expression of virulence of the organisms has also been briefly outlined. The abbreviations and nomenclatures used in the earlier two reviews [1,2] will be used here as such and unless stated otherwise for any particular case. ...
... The structure of the O-PS of V. cholerae of any serogroup has been found to be unique [1]. The genetic organization encoding the O-PS biosynthesis is quite susceptible to change, but the factors responsible for effecting such changes are still largely unknown [2]. Thus, a new serogroup or any of the known serogroups may acquire pathogenic potential in epidemic genetic background and may cause future epidemics. ...
This review presents the salient features of the biological functions including the (i) endotoxic activities, (ii) antigenic properties, (iii) immunological responses to and (iv) phage receptor activities of the Vibrio cholerae lipopolysaccharides (LPS). The biological functions of the capsular polysaccharide (CPS) of V. cholerae have also been discussed briefly as a relevant topic. The roles of LPS and other extracellular polysaccharides in the (i) intestinal adherence and virulence of the vibrios and (ii) the biofilm formation by the organisms have been analysed on the basis of the available data. Every effort has been made to bring out, wherever applicable, the lacunae in our knowledge. The need for the continuous serogroup surveillance and monitoring of the environmental waters and the role of LPS in the designing of newer cholera vaccines has been discussed briefly in conclusion.
... Whole-genome sequencing of all nine resistant isolates identified that isolates A-I (excluding the non-resistant isolate B) shared the same 11 bp deletion in the manB gene while isolate J had an insertion in the wbeU gene (Table 1; Fig. 3). Both genes are part of the O1 antigen biosynthesis operons of V. cholerae (14,25). Given that the identical mutation in manB was isolated from eight independent cultures, we hypothesized this mutation was likely present in the original common starting overnight culture. ...
... Whole-genome sequencing of pan-resistant isolates reveals mutations in the O-antigen biosynthesis pathway Gene names were determined as part of the wbe cluster(14,15,25) and the rfb cluster(26,27). The boldface refers to the gene designations used in the text. ...
In its natural aquatic environment, the bacterial pathogen Vibrio cholerae, the causative agent of the enteric disease cholera, is in constant competition with bacterial viruses known as phages. Following ICP3 infection, V. cholerae cultures that exhibited phage killing always recovered overnight, and clones isolated from these regrowth populations exhibited complete resistance to subsequent infections. Whole-genome sequencing of these resistant mutants revealed seven distinct mutations in genes encoding for enzymes involved in O1 antigen biosynthesis, demonstrating that the O1 antigen is a previously uncharacterized putative receptor of ICP3. To further elucidate the specificity of the resistance conferred by these mutations, they were challenged with the V. cholerae-specific phages ICP1 and ICP2. All seven O1 antigen mutants demonstrated pan-resistance to ICP1 but not ICP2, which utilizes the OmpU outer membrane protein as a receptor. We show that resistant mutations to ICP1 and ICP3 evolve at a significantly higher frequency than ICP2, but these mutations have a significant fitness tradeoff to V. cholerae and are unable to evolve in the presence of an antimicrobial that mimics host cell defensins.
... In V. cholerae O1, the O-PS genes are organized in a gene cluster between the gmhD and rjg open reading frames (ORFs), and this cluster is defined as the wbe region [12]. The O-PS gene cluster from O1 consists of five regions whose genes encode perosamine biosynthesis, O-antigen transport, tetronate biosynthesis, O-antigen modification, and some additionally required genes [13]. Gene cluster comparisons suggest that O139 probably resulted from a precise 22-kb deletion of the wbe region of O1, with replacement by a 35-kb wbf region (wbfA through wbfX) encoding the O139 O-antigen [14], possibly involving a homologous recombination event [15]. ...
... Specifically, analysis of the O-PS gene clusters may reveal the genetic basis of the differential antigen synthesis observed in V. cholerae, which gives rise to its different serogroups. Although the genetic variability and origins of the O-PS cluster genes from O1 and O139 are well described [13], far less is known about the non-O1/non-O139 strains. Here, we sequenced the draft genomes of three V. cholerae strains from serogroups O159 and O170 whose genomes have not been reported previously. ...
Background
Of the hundreds of Vibrio cholerae serogroups, O1 and O139 are the main epidemic-causing ones. Although non-O1/non-O139 serogroups rarely cause epidemics, the possibility exists for strains within them to have pathogenic potential.
Results
We selected 25 representative strains within 16 V. cholerae serogroups and examined their genomic and functional characteristics. We tentatively constructed a gene pool containing 405 homologous gene clusters, which is well organized and functions in O-antigen polysaccharide (O-PS) synthesis. Our network analysis indicate that great diversity exists in O-PS among the serogroups, and several serogroup pairs share a high number of homologous genes (e.g., O115 and O37; O170 and O139; O12 and O39). The phylogenetic analysis results suggest that a close relationship exists between serogroups O170, O89 and O144, based on neighbor-joining (NJ) and gene trees, although serogroup O159 showed an inconsistent phylogenetic relationship between the NJ tree and the gene tree, indicating that it may have undergone extensive recombination and horizontal gene transfer. Different phylogenetic structures were observed between the core genes, pan genes, and O-PS genes. The virulence gene analysis indicated that the virulence genes from all the representative strains may have their sources from four particular bacteria (Pseudomonas aeruginosa, V. vulnificus, Haemophilus somnus and H. influenzae), which suggests that V. cholerae may have exchanged virulence genes with other bacterial genera or species in certain environments. The mobile genetic element analysis indicated that O159 carries nearly complete VSP-II and partial VPI-1 and VPI-2, O170 carries partial VPI-1 and VPI-2, and several non-O1/non-O139 strains contain full or partial VPI-1 and VPI-2. Several genes showing evidence of positive selection are involved in chemotaxis, Na + resistance, or cell wall synthesis, suggestive of environmental adaptation.
Conclusions
This study reports on the newly sequenced O159 and O170 genomes and their comparisons with other V. cholerae serogroups. The complicated O-PS network of constituent genes highlights the detailed recombination mechanisms that have acted on the serogroups’ genomes. The serogroups have different virulence-related gene profiles, and there is evidence of positive selection acting on other genes, possibly during adaptation to different environments and hosts.
Electronic supplementary material
The online version of this article (10.1186/s12864-019-5603-7) contains supplementary material, which is available to authorized users.
... There are little more than 100 different serogroups of Vibrio cholerae, however there are only two known to cause epidemics, the O1 and O139, where the O1 serogroup is responsible for > 98% of all cases [9]. The O1 has three different serotypes named Ogawa, Inaba, and Hikojima [13]. All three can have the biotype "Classical" or "El Tor". ...
... The bacteria strains used in this study are shown in Table 1 and plasmids in Table 2. wbeT, 1.0 kb, is believed to regulate serotype. The wild type is Ogawa and a mutation such as deletion, truncation or insert in the gene will result in an Inaba serotype [13]. ...
Cholera is a severe disease that exists all over the world but mostly in developing countries. Currently available oral vaccines are effective but are complicated to make and therefore relatively expensive. The vaccine comes in liquid form an requires both a cold chain for distribution and two doses for full protection. If a more effective and cheaper vaccine that requires only a single dose for full protection could be developed in a dry formulation, it would have a potentially profound effect in developing countries. This study is a part of a larger project that aims to generate a single vaccine strain. During the limited time available in this study neither of the two methods, /In vitro/ transposition and /red/gam/ recombination system, used for introducing mutations into the genome of /Vibrio cholerae/ was successfully developed. However the genes are cloned and standard suicide vector mutagenesis can proceed in further studies. It has been demonstrated that when a /wbeT/-gene from an Ogawa strain are inserted /in trans/ in an Inaba strain, and the levels of expression are limited, the result is a culture that expresses both Ogawa and Inaba serotypes. Immunisation studies are ongoing. There is interest in developing the /red/gam/ recombination system for /Vibrio cholerae/, since it is more straightforward and simpler than the traditional methods. However, additional studies and more time are needed to investigate why the recombination system did not work and how to make it functional in /Vibrio cholerae/. The results indicate the described approach to make mixed serotype strains is valid but more studies are also needed to determine if the culture that expresses both serotypes consists of cells that express both serotypes or if it is a mixture of cells each expressing a single serotype. Strains for the experiment are available and with FACS it is easily demonstrated.
... These findings suggest that the resistance of these natural isolates to VP4 infection is related to some aspect of the receptor, possibly structure changes. LPS chemically consists of O antigen, core oligosaccharide, and lipid A. The wb* gene cluster (and a newly recognized gene important for perosamine biosynthesis) and a complex pathway are required for O1 antigen synthesis (54). It could be speculated that some mutations in these genes may result in the changes or loss of O antigen, including the chemical group modification on the residues caused by some of the wb* gene mutations, and then the phages may fail to bind and infect the strains or may reduce the infection efficiencies. ...
... It could be speculated that some mutations in these genes may result in the changes or loss of O antigen, including the chemical group modification on the residues caused by some of the wb* gene mutations, and then the phages may fail to bind and infect the strains or may reduce the infection efficiencies. An example is the finding that O1 antigen variation mediated by three homonucleotide tracts in two genes in V. cholerae results in a lower molecular weight of O1 antigen and infection failure of O1-specific phage ICP1 afterwards, or lower ICP1 infection efficiency without macroscopic change in LPS pattern, possibly because of less O1 antigen-substituted LPS in such a case (54). In our study, the naturally VP4-resistant strain 367 is still of the O1 serogroup and has an O-antigen pattern similar to that of the VP4-sensitive O1 strain, and complementation of its mutant manB converted its sensitivity to VP4, suggesting that some group modifications of O antigen are responsible for the phage infection (binding) but do not affect recognition of O1 antiserum. ...
Bacteriophage VP4 is a lytic phage of the Vibrio cholerae serogroup O1, and it is used in phage subtyping of V. cholerae biotype El Tor. Studies of phage infection mechanisms will promote the understanding of the basis of phage subtyping as well
as the genetic differences between sensitive and resistant strains. In this study, we investigated the receptor that phage
VP4 uses to bind to El Tor strains of V. cholerae and found that it infects strains through adsorbing the O antigen of V. cholerae O1. In some natural isolates that are resistant to VP4 infection, mutations were identified in the wb* cluster (O-antigen gene cluster), which is responsible for the biosynthesis of O antigen. Mutations in the manB, wbeE, and wbeU genes caused failure of adsorption of VP4 to these strains, whereas the observed amino acid residue mutations within wbeW and manC have no effect on VP4 infection. Additionally, although mutations in two resistant strains were found only in manB and wbeW, complementing both genes did not restore sensitivity to VP4 infection, suggesting that other resistance mechanisms may exist.
Therefore, the mechanism of VP4 infection may provide a basis for subtyping the phage. Elaborate mutations of the O antigen
may imbue V. cholerae strains with resistance to phage infection.
... Unlike the O1-encoding region in El Tor strains, the O139-antigen gene cluster was found to specify not only the new O139 side chain, but in addition, a capsular polysaccharide (CPS)131415 that contains the same O139-antigenic determinant. The close genetic relatedness of the ancestral O1 El Tor lineage with the new O139 serogroup16171819, the existence of different O-antigen–encoding cassettes at the same chromosomal locus20212223, and the presence of regions of homology on either side of this site [12,15,24,25] strongly support the hypothesis that some kind of horizontal gene transfer event had occurred, resulting in replacement of the original O1 gene cluster with the O139 gene cluster of a V. cholerae environmental strain [23,2627282930. However, neither the gene transfer mechanism nor the ecological context in which this occurred has been elucidated. ...
... This shows that the internal IS1358 site of homology is not required forFigure 1. Comparison of the O-Antigen–Encoding DNA Region (wb*) of Strain A1552 (O1) and MO10 (O139) The genetic organization of the O1-specific and O139-specific DNA clusters on chromosome I of V. cholerae are shown (adapted from Heidelberg et al. [31], Stoeher et al. [28], Yamasaki et al. [33], Chatterjee and Chaudhuri [30], and the whole genome shotgun sequence of V. cholerae MO10). Genes and their orientation are denoted by arrows. ...
The environmental reservoirs for Vibrio cholerae are natural aquatic habitats, where it colonizes the chitinous exoskeletons of copepod molts. Growth of V. cholerae on a chitin surface induces competence for natural transformation, a mechanism for intra-species gene exchange. The antigenically diverse O-serogroup determinants of V. cholerae are encoded by a genetically variable biosynthetic cluster of genes that is flanked on either side by chromosomal regions that are conserved between different serogroups. To determine whether this genomic motif and chitin-induced natural transformation might enable the exchange of serogroup-specific gene clusters between different O serogroups of V. cholerae, a strain of V. cholerae O1 El Tor was co-cultured with a strain of V. cholerae O139 Bengal within a biofilm on the same chitin surface immersed in seawater, and O1-to-O139 transformants were obtained. Serogroup conversion of the O1 recipient by the O139 donor was demonstrated by comparative genomic hybridization, biochemical and serological characterization of the O-antigenic determinant, and resistance of O1-to-O139 transformants to bacteriolysis by a virulent O1-specific phage. Serogroup conversion was shown to have occurred as a single-step exchange of large fragments of DNA. Crossovers were localized to regions of homology common to other V. cholerae serogroups that flank serogroup-specific encoding sequences. This result and the successful serogroup conversion of an O1 strain by O37 genomic DNA indicate that chitin-induced natural transformation might be a common mechanism for serogroup conversion in aquatic habitats and for the emergence of V. cholerae variants that are better adapted for survival in environmental niches or more pathogenic for humans.
... To our surprise, seven consecutive genes within the O1-biosynthetic cluster (gmd-wbeL (48)) were significantly upregulated when comparing overnight anaerobic bile conditions to either aerobic or anaerobic LB (Fig. 3a). This locus contains genes required for the biosynthesis of both O1-antigen precursor components, perosamine and tetronate, as well as the required transport genes for O1-antigen assembly (48). We were not expecting to observe a corollary transcriptional upregulation in this genomic region in conditions where less O1-decorated LPS was produced, and so, we proceeded to investigate if the observed transcriptional upregulation resulted in increased protein production. ...
Bacteriophages (viruses of bacteria) play a pivotal role in shaping both the evolution and dynamics of bacterial populations. Bacteria employ arsenals of genetically encoded phage defense systems, but can alternatively achieve protection by changing the availability of cellular resources that phages rely on for propagation. These physiological changes are often adaptive responses to unique environmental signals. The facultative pathogen Vibrio cholerae adapts to both aquatic and intestinal environments with niche-specific physiological changes that ensure its evolutionary success in such disparate settings. In both niches, V. cholerae is susceptible to predation by lytic phages like ICP1. However, both phages and susceptible bacterial hosts coexist in nature, indicating that environmental cues may modulate V. cholerae cell state to protect against phage infection. This work explores one such modification in response to the intestine-specific signals of bile and anaerobicity. We found that V. cholerae grown in these conditions reduces O1-antigen decoration on its outer membrane lipopolysaccharide. Because the O1-antigen is an essential moiety for ICP1 phage infection, we investigated the effect of partial O1-antigen depletion as a mechanism of phage defense and observed that O1-depletion limits phage adsorption. We identified mechanistic contributions to O1-depletion, including the essentiality of a weak acid tolerance system for O1 production at low pH and alterations in transcriptional profiles indicating limitations in resources for O1-biosynthesis. This analysis illustrates a complex interplay between signals relevant to the intestinal environment and bacterial physiology that provides V. cholerae with protection from phage predation.
IMPORTANCE
Vibrio cholerae is the bacterial pathogen responsible for cholera, a diarrheal disease that impacts people in areas without access to potable water. In regions that lack such infrastructure, cholera represents a large proportion of disease outbreaks. Bacteriophages (phages, viruses that infect bacteria) have recently been examined as potential therapeutic and prophylactic agents to treat and prevent bacterial disease outbreaks like cholera due to their specificity and stability. This work examines the interaction between V. cholerae and vibriophages in consideration for a cholera prophylaxis regimen (M. Yen, L. S. Cairns, and A. Camilli, Nat Commun 8:14187, 2017, https://doi.org/10.1038/ncomms14187 ) in the context of stimuli found in the intestinal environment. We discover that common signals in the intestinal environment induce cell surface modifications in V. cholerae that also restrict some phages from binding and initiating infection. These findings could impact considerations for the design of phage-based treatments, as phage infection appears to be limited by bacterial adaptations to the intestinal environment.
... To our surprise, seven consecutive genes within the O1-biosynthetic cluster (gmd-wbeL 47 ) were significantly upregulated when comparing overnight anaerobic bile conditions to either aerobic or anaerobic LB ( Figure 3A). This locus contains genes required for biosynthesis of both O1-antigen precursor components, perosamine and tetronate, as well as the required transport genes for O1antigen assembly 47 . We were not expecting to observe a corollary transcriptional upregulation in this genomic region in conditions where less O1-decorated LPS was produced, so we proceeded to investigate if the observed transcriptional upregulation resulted in increased protein production. ...
Bacteriophages (viruses of bacteria) play a pivotal role in shaping both the evolution and dynamics of bacterial populations. Bacteria employ arsenals of genetically encoded phage defense systems, but can alternatively achieve protection by changing the availability of cellular resources that phages rely on for propagation. These physiological changes are often adaptive responses to unique environmental signals. The facultative pathogen Vibrio cholerae adapts to both aquatic and intestinal environments with niche-specific physiological changes that ensure its evolutionary success in such disparate settings. In both niches, V. cholerae is susceptible to predation by lytic phages like ICP1. However, both phages and susceptible bacterial hosts coexist in nature, indicating that environmental cues may modulate V. cholerae cell state to protect against phage infection. This work explores one such modification in response to the intestine-specific signals of bile and anaerobicity. We found that V. cholerae grown in these conditions reduces O1-antigen decoration on its outer membrane lipopolysaccharide. Because the O1-antigen is an essential moiety for ICP1 phage infection, we investigated the effect of partial O1-antigen depletion as a mechanism of phage defense and observed that O1-depletion limits phage adsorption. We identified mechanistic contributions to O1-depletion, including the essentiality of a weak acid tolerance system for O1 production at low pH, and alterations in transcriptional profiles indicating limitations in resources for O1-biosynthesis. This analysis illustrates a complex interplay between signals relevant to the intestinal environment and bacterial physiology that provide V. cholerae with protection from phage predation.
... Genes located upstream of gmhD and downstream of rjg are conserved. Thirdly, in V. cholerae, which is closely related to V. fluvialis in phylogenetic analysis (Lu et al., 2014;Thompson et al., 2005), the O-antigen gene cluster is located between gmhD and rjg (Chatterjee and Chaudhuri, 2004). Fourthly, the presence of nucleotide sugar precursor synthesis genes in these gene clusters are correlated with the sugar composition of the V. fluvialis O-antigen, as reveled by structural analysis. ...
Vibrio fluvialis is an emerging foodborne pathogen that causes severe infections. Serotyping based on surface polysaccharide antigens is important for the clinical detection and epidemiological surveillance of pathogens such as V. fluvialis. For example, variation of the O-antigen, which is highly polymorphic and is responsible for the majority of antigenic variability on the bacterial cell surface, provides the basis for serotyping of Gram-negative bacteria. Currently, there has been no analysis of the O-antigen gene clusters in V. fluvialis. In this study, the putative O-antigen gene clusters of 18 V. fluvialis serogroups (O1–O18), which exhibit a high level diversity, were analyzed by whole-genome sequencing. A microsphere-based suspension array (MSA) based on O-serogroup-specific genes was developed for identification of V. fluvialis strains O1–O18 and evaluated for specificity and sensitivity in double-blind tests. Furthermore, analysis of 62 publicly available V. fluvialis genomes identified 13 new O-antigen gene cluster types. The detection sensitivity was determined to be 10⁻² ng for genomic DNA and 10³ CFU for pure cultures. When testing simulated samples in an oyster background, 2 to 20 CFU per gram inoculated could be detected after enrichment using this method. Our work provides an efficient tool for rapid detection and identification of V. fluvialis serogroups from clinical and environmental samples, with the potential for use in epidemiological investigations and food safety applications.
... The genomic analysis indicated that those strains isolated in two outbreaks were closely related. V. cholerae is a natural habitat of estuary water, especially in places rich in plankton (1). These pieces of information indicated that an unknown contaminated source existed. ...
Introduction:
Gastroenteritis caused by non-O1/non-O139 Vibrio cholerae exhibited an increasing trend in recent years in China. Whole genome sequence (WGS) data could play an important role both in the identification of the outbreaks and in the determination of the serogroup. Here, we present the employment of WGS data in the investigation of two outbreaks caused by non-O1/non-O139 V. cholerae in Guangdong, China, 2020-2021.
Methods:
We obtained the whole genome sequence of 66 V. cholerae strains isolated in two outbreaks with next generation sequencing technology. We retrieved the publicly available WGS data of non-O1/non-O139 V. cholerae from public database. We used a pipeline integrated in China Pathogen Identification Net (PIN) to complete the phylogenetic analysis.
Results:
Two outbreaks caused by non-O1/non-O139 V. cholerae were identified using WGS data. These V. cholerae strains were determined as serogroup O5. Type 3 and 6 secretion systems were detected in these serogroup O5 strains. These serogroup O5 strains belonged to sequence type (ST) 88.
Conclusions:
Our analysis indicated the risk of non-O1/non-O139 V. cholerae leading to outbreaks of diarrheal diseases. The application of genomic data played an important role in the identification of the serogroup of non-O1/non-O139 V. cholerae in the lack of antiserum, which gave an example of the application of genome data in disease surveillance and public health emergency response.
... O-antigens are known to have more than 200 phenotypes due to various combinations of these genes. For O1, which is the representative serogroup of V. cholerae, an estimated 19 genes that generate the O1-specific antigen are distributed between the epimerase gene, gmhD, and cleavage gene, rjg, which are involved in the major stages of lipopolysaccharide (LPS)-core generation (Chatterjee and Chaudhuri, 2004). Among them, the 13th-15th open reading frame (ORF) gene, wbeT (previously called rfbT), is a methyltransferase gene known to determine the O1 serotypes Ogawa, Inaba, and Hikojima, which are serotypes of O1 (Stroeher et al., 1992). ...
Genomic information can be used to predict major pathogenic traits of pathogens without the need for laboratory experimentation. However, no Vibrio cholerae genome-based trait identification tools currently exist. The aim of this study was to develop a web-based prediction tool to identify Vibrio pathogenic traits using publicly available 796 whole-genome sequences of V. cholerae . Using this application, 68 structural O-antigen gene clusters belonging to 49 serogroups of V. cholerae were classified, and the composition of the genes within the O-antigen cluster of each serogroup was identified. The arrangement and location of the CTX prophage and related elements of the seventh cholera pandemic strains were also revealed. With the versatile tool, named VicPred, we analyzed the assemblage of various SXTs (sulfamethoxazole/trimethoprim resistance element) and major genomic islands (GIs) of V. cholerae , and the increasing trend in drug-resistance revealing high resistance of the V. cholerae strains to certain antibiotics. The pathogenic traits of newly sequenced V. cholerae strains could be analyzed based on these characteristics. The accumulation of further genome data will expedite the establishment of a more precise genome-based pathogenic traits analysis tool.
... Vibrio cholerae, the causative agent of cholera is an autochthonous resident of the water bodies survives in association with plankton, crab and shrimps, and so on, whereas human acts as an accidental host for the bacterium. However, it was rarely possible to isolate them during inter-epidemic periods from the same water bodies by culture methods (Huq et al., 1983;Colwell and Sipra, 1992;Chatterjee and Chaudhuri, 2004;Alam et al., 2006). Vibrios exist as viable but nonculturable state and also as non-O1 and non-O139 serogroups mostly without major virulence factors during interepidemic period. ...
The environmental reservoirs of different serogroups of Vibrio cholerae causing cholera in the flowing freshwater bodies of the tribal areas of Odisha are not known. So the present study was conducted from June 2017 to March 2020 to find out the environmental reservoirs of V. cholerae serogroups in the water and plankton samples collected from the river, nala, stream and chua from Rayagada district. Similarly, rectal swabs were collected from diarrhoea patients and correlation was established among the V. cholerae strains isolated from diarrhoea patients and environmental V. cholerae isolates through routine culture, different multiplex PCR assays and pulse field gel electrophoresis (PFGE) analysis using standard techniques. The multiplex PCR assays on biotypes and different toxic genes exhibited similar correlation between the clinical and water isolates, which was further strengthened by PFGE analysis. The planktonic DNA was positive for ctxA gene which established that the environmental water bodies were the reservoirs for virulence genes of V. cholerae serogroups. The detection of environmental reservoirs of V. cholerae serogroups in temporarily stagnant condition of water; partially encircled by stones, and near the bank of the river, nala and stream were the reservoirs which is a rare report from Odisha, India and Globe.
... 6. Virulence factors and genetic diversity of environmental V. cholerae vis-à-vis clinical isolates V. cholerae is known to be autochthonous to marine and estuarine ecosystems, which act as a source and reservoir for human infections [25]. Based on variations in cell-surface lipopolysaccharides, almost 200 serogroups (O1-O200) are known for V. cholerae, out of which only serogroups O1 and O139 are pathogenic, and are associated with cholera [26][27][28][29][30]. The other serogroups are collectively called as non-O1 non-O139 V. cholerae, which are seldom associated with diarrheal diseases less severe than cholera [31]. ...
In the freshwater environment of north India, cholera appears seasonally in form of clusters as well as sporadically, accounting for a significant piece of the puzzle of cholera epidemiology. We describe a number of cholera outbreaks with an average attack rate of 96.5/1000 but an overall low case fatality (0.17). Clinical cholera cases coincided with high rainfall and elevated temperatures, whereas isolation of V. cholerae non-O1 non-O139 from water was dependent on temperature (p < 0.05) but was independent of rainfall and pH (p > 0.05). However, isolation from plankton samples correlated with increased temperature and pH (p < 0.05). A lag period of almost a month was observed between rising temperature and increased isolation of V. cholerae from the environment, which in succession was followed by an appearance of cholera cases in the community a month later. Our results suggested that the aquatic environment can harbor highly divergent V. cholerae strains and serve as a reservoir for multiple V. cholera virulence-associated genes that may be exchanged via mobile genetic elements. In agreement with PFGE, AFLP data also proved that the V. cholerae O1 population was not clonal but was closely related. Our investigation did not support the concept that seasonal cholera outbreaks occur by movement of a single clonal strain across the region, as the clinical isolates from the same years were clearly different, implying that continuous evolution of V. cholerae O1 strains occurs in the cholera endemic area. Interestingly, the viable but non-culturable (VBNC) V. cholerae O1 cells were demonstrated in 2.21% samples from natural water bodies in addition to 40.69% samples from cholera-affected areas respectively. This suggests that aquatic environs do harbor the pathogenic O1 strain, though the isolation of culturable V. cholerae O1 is a rare event in the presence of relatively abundant non-O1 non-O139 isolates.
... It was shown previously that slipped-strand mispairing in the poly-A tracts of O-antigen synthesis genes can result in abnormal O-antigen and confer ICP1 resistance 13 . Consistent with this, the mutations in ICP1-and ICP3-resistant isolates were found in O-antigen synthesis genes located on chromosome 1 of V. cholerae between open reading frames VC0240 (gmhD) and VC0269 (manA) 18 (Supplementary Data 2). Although LPS mutations were a common source of resistance in these isolates, this is not of major concern given that strains carrying such mutations have previously been shown to be avirulent [19][20][21] . ...
Effective prevention strategies will be essential in reducing disease burden due to bacterial infections. Here we harness the specificity and rapid-acting properties of bacteriophages as a potential prophylaxis therapy for cholera, a severely dehydrating disease caused by Vibrio cholerae. To this end, we test a cocktail of three virulent phages in two animal models of cholera pathogenesis (infant mouse and rabbit models). Oral administration of the phages up to 24 h before V. cholerae challenge reduces colonization of the intestinal tract and prevents cholera-like diarrhea. None of the surviving V. cholerae colonies are resistant to all three phages. Genome sequencing and variant analysis of the surviving colonies indicate that resistance to the phages is largely conferred by mutations in genes required for the production of the phage receptors. For acute infections, such as cholera, phage prophylaxis could provide a strategy to limit the impact of bacterial disease on human health.
... WbdD is the terminating enzyme and thus regulates chain length by methylat-ing the glycan: the higher the concentration of this enzyme, the shorter the glycan chains (174). An ABC transporter formed by the Wzm-Wzt heterodimer transports the structure to the periplasm (63,150,(175)(176)(177) (Fig. 6B). ...
Humans have been increasingly recognized as being superorganisms, living in close contact with a microbiota on all their mucosal surfaces. However, most studies on the human microbiota have focused on gaining comprehensive insights into the composition of the microbiota under different health conditions (e.g., enterotypes), while there is also a need for detailed knowledge of the different molecules that mediate interactions with the host. Glycoconjugates are an interesting class of molecules for detailed studies, as they form a strain-specific barcode on the surface of bacteria, mediating specific interactions with the host. Strikingly, most glycoconjugates are synthesized by similar biosynthesis mechanisms. Bacteria can produce their major glycoconjugates by using a sequential or an en bloc mechanism, with both mechanistic options coexisting in many species for different macromolecules. In this review, these common themes are conceptualized and illustrated for all major classes of known bacterial glycoconjugates, with a special focus on the rather recently emergent field of glycosylated proteins. We describe the biosynthesis and importance of glycoconjugates in both pathogenic and beneficial bacteria and in both Gram-positive and -negative organisms. The focus lies on microorganisms important for human physiology. In addition, the potential for a better knowledge of bacterial glycoconjugates in the emerging field of glycoengineering and other perspectives is discussed.
... RAST annotation analysis of the MS6 genome predicted 3,746 predicted open reading frames (ORFs). The nucleotide sequences of the genes encoding the components of the polysaccharide (wav cluster) and O antigen (wbe gene cluster) biosynthetic pathways [21] were highly similar to those of other O1 El Tor strains, indicating that other organisms were not likely their source. ...
Background
The cholera outbreaks in Thailand during 2007–2010 were exclusively caused by the Vibrio cholerae O1 El Tor variant carrying the cholera toxin gene of the classical biotype. We previously isolated a V. cholerae O1 El Tor strain from a patient with diarrhea and designated it MS6. Multilocus sequence-typing analysis revealed that MS6 is most closely related to the U. S. Gulf Coast clone with the exception of two novel housekeeping genes.
Methodology/Principal Findings
The nucleotide sequence of the genome of MS6 was determined and compared with those of 26 V. cholerae strains isolated from clinical and environmental sources worldwide. We show here that the MS6 isolate is distantly related to the ongoing seventh pandemic V. cholerae O1 El Tor strains. These strains differ with respect to polymorphisms in housekeeping genes, seventh pandemic group-specific markers, CTX phages, two genes encoding predicted transmembrane proteins, the presence of metY (MS6_A0927) or hchA/luxR in a highly conserved region of the V. cholerae O1 serogroup, and a superintegron (SI). We found that V. cholerae species carry either hchA/luxR or metY and that the V. cholerae O1 clade commonly possesses hchA/luxR, except for MS6 and U. S. Gulf Coast strains. These findings illuminate the evolutionary relationships among V. cholerae O1 strains. Moreover, the MS6 SI carries a quinolone-resistance gene cassette, which was closely related with those present in plasmid-borne integrons of other gram-negative bacteria.
Conclusions/Significance
Phylogenetic analysis reveals that MS6 is most closely related to a U. S. Gulf Coast clone, indicating their divergence before that of the El Tor biotype strains from a common V. cholerae O1 ancestor. We propose that MS6 serves as an environmental aquatic reservoir of V. cholerae O1.
... The V. cholerae O1 antigen is composed of 12-18 repeating units of a(1,2)-linked D-perosamine (4-amino-4,6-dideoxy D-mannose) residues, the amino groups of which are acylated with tetronate (3deoxy-L-glycero-tetronic acid) (Fig. S1) [1,[5][6][7][8]. The genes currently described as being required for the synthesis of the O1 antigen are located on chromosome 1 of the V. cholerae O1 N16961 genome between open reading frames (ORFs) VC0240 (gmhD) and VC0264 (rjg) (Fig. 1A) [9]. This region (the wbe or rfb region) was originally identified through the heterologous expression of the V. cholerae O1 antigen in Escherichia coli K-12 [10]. ...
Author Summary
The O1 serogroup of Vibrio cholerae is the most common cause of the potentially fatal diarrheal disease cholera, which remains a significant global health burden worldwide. The O1 antigen is a constituent of the lipopolysaccharide portion of the outer membrane, and its location on the bacterial surface makes it a major target of both the immune system and bacteriophages. We used an O1-specific bacteriophage as a tool to understand if, and how, V. cholerae can alter O1 antigen expression. We discovered that two genes, which are critical for O1 antigen biosynthesis, are subject to phase variation. Additionally, one of the phase variable genes we identified was not previously known to play a role in O1 antigen biosynthesis in V. cholerae. Phase variation is a well-recognized mechanism many other bacterial pathogens use to generate variable expression of surface components, and this is generally thought to help these organisms evade the immune system. Phase variation has not previously been described as a widespread mechanism used by V. cholerae, furthermore, this is the first report that V. cholerae O1 is capable of generating diverse populations with variable and unique O1 antigen expression.
... Vibrio cholerae, a facultative human pathogen, can survive and thrive in aquatic environment. More than 200 serogroups (O1-O200) exist (Chatterjee and Chaudhuri 2004), but only toxigenic strains of the serogroups O1 and O139 cause cholera (Nelson et al. 2009). Non-O1-non-O139 serogroups are indigenous members of the aquatic ecosystem and are generally nonpathogenic (Faruque et al. 1998). ...
To conduct epidemiological and ecological surveillance of cholera in freshwater environments.
A freshwater region of India was surveyed between April 2007 and December 2008. Vibrio cholerae was isolated from 59·5% of water and plankton samples (n = 357) and 35·5% of stool samples (n = 290). Isolation from water was dependent on air (r = 0·44) and water temperatures (r = 0·49) (P < 0·01) but was independent of rainfall (r = 0·15), chlorophyll a (r = 0·18), salinity (r = 0·2) or pH (r = 0·2) (P > 0·05). Isolation from plankton was dependent on temperature of air (r = 0·45), water temperature (r = 0·44), chlorophyll a concentration (r = 0·42), pH (r = 0·23) and salinity (r = 0·39) (P < 0·01). Cholera cases correlated with rainfall (r = 0·82, P < 0·01) and chlorophyll a concentration (r = 0·42, P < 0·05), but not with air temperature (r = 0·3, P = 0·37). Vibrio cholerae O1 possessed ctxB, ctxA, rstR and tcpA (ElTor), toxR, toxT, rtxA, rtxC, mshA and hylA. Among non-O1-non-O139, the distribution of virulence-associated and regulatory protein genes was heterogeneous with - 0·7, 2·2, 94·77, 97·76, 99·25, 100 and 100% isolates being positive for tcpA, toxT, rtxA, rtxC, hylA, toxR and mshA, respectively. Two-thirds of non-O1-non-O139 isolates exhibited antibiotic resistance to various antibiotics that did not correlate with geographical site or time of origin for the isolates. RAPD and AFLP showed V. cholerae to be a diverse bacterium. AFLP demonstrated separate lineages for non-O1-non-O139 and O1 isolates.
Environmental parameters played a significant role in the emergence and spread of cholera and the abundance of V. cholerae. But based on virulence gene profiling and genetic fingerprinting, the possibility of origin of toxigenic isolates from nontoxigenic environmental isolates seems unlikely in freshwater environs of India.
This study explains the ecology, epidemiology and seasonality of cholera in freshwater environs.
... Comparison of the O antigen genes in the V. anguillarum strains 775, 96F, and RV22 and V. ordalii. It has been shown that the regions for O-antigen biosynthesis in V. cholerae O1, O22, O31, O37, and O139 are surrounded by gmhD and rjg genes and that this region is also important for the production of capsule of non-O1 V. cholerae O31 and O139 (7,10,11,12). In the V. anguillarum serotype O1 strain, virA (wbhS) and virB (wbhR) are involved in LPS biosynthesis and have been shown to be important for virulence (53). ...
We dissected the complete genome sequence of the O1 serotype strain Vibrio anguillarum 775(pJM1) and determined the draft genomic sequences of plasmidless strains of serotype O1 (strain 96F) and O2β (strain RV22)
and V. ordalii. All strains harbor two chromosomes, but 775 also harbors the virulence plasmid pJM1, which carries the anguibactin-producing
and cognate transport genes, one of the main virulence factors of V. anguillarum. Genomic analysis identified eight genomic islands in chromosome 1 of V. anguillarum 775(pJM1) and two in chromosome 2. Some of them carried potential virulence genes for the biosynthesis of O antigens, hemolysins,
and exonucleases as well as others for sugar transport and metabolism. The majority of genes for essential cell functions
and pathogenicity are located on chromosome 1. In contrast, chromosome 2 contains a larger fraction (59%) of hypothetical
genes than does chromosome 1 (42%). Chromosome 2 also harbors a superintegron, as well as host “addiction” genes that are
typically found on plasmids. Unique distinctive properties include homologues of type III secretion system genes in 96F, homologues
of V. cholerae zot and ace toxin genes in RV22, and the biofilm formation syp genes in V. ordalii. Mobile genetic elements, some of them possibly originated in the pJM1 plasmid, were very abundant in 775, resulting in the
silencing of specific genes, with only few insertions in the 96F and RV22 chromosomes.
... Strains exhibit extensive phenotypic and genetic heterogeneity and can be classified according to several different criteria. For example, serogroup designation is based on the structure of the somatic O antigen, whereas the pathogenicity of a strain is determined by its ability to colonize a human host and cause the severe and potentially lethal diarrheal disease known as cholera (15,26,68). Importantly, more than 200 different serogroups have been identified, and both pathogenic and nonpathogenic strains of different serogroups have been found to coexist in environmental reservoirs worldwide (27,77). ...
Strain AM-19226 is a pathogenic non-O1/non-O139 serogroup Vibrio cholerae strain that does not encode the toxin-coregulated pilus or cholera toxin but instead causes disease using a type three secretion
system (T3SS). Two genes within the T3SS pathogenicity island, herein named vttRA (locus tag A33_1664) and vttRB (locus tag A33_1675), are predicted to encode proteins that show similarity to the transcriptional regulator ToxR, which
is found in all strains of V. cholerae. Strains with a deletion of vttRA or vttRB showed attenuated colonization in vivo, indicating that the T3SS-encoded regulatory proteins play a role in virulence. lacZ transcriptional reporter fusions to intergenic regions upstream of genes encoding the T3SS structural components identified
growth in the presence of bile as a condition that modulates gene expression. Under this condition, VttRA and VttRB were necessary for maximal gene expression. In contrast, growth in bile did not substantially alter the expression of a reporter
fusion to the vopF gene, which encodes an effector protein. Increased vttRB reporter fusion activity was observed in a ΔvttRB strain background, suggesting that VttRB may regulate its own expression. The collective results are consistent with the hypothesis that T3SS-encoded regulatory proteins
are essential for pathogenesis and control the expression of selected T3SS genes.
... These may be acquired through horizontal transfer or, alternatively, O1/O139 strains may be modified, leading to serogroup conversion [11] (reviewed in [12]). Synthesis of the O antigen is mediated by a large gene cluster (wbe cluster for O1 strains) which can change substantially between serogroups [13]. ...
Traditional methods of typing Vibrio cholerae define virulent strains according to their recognition by sera directed against the known epidemic serogroups O1 and O139, overlooking potentially virulent non-O1/non-O139 strains. Here, we have undertaken the characterization of eight clinical isolates of non-O1/non-O139 V. cholerae, collected during cholera outbreaks in Brazil. Seven of these were typed as O26 and one, 17155, was defined as non-typable. A PCR-based approach has previously detected in these strains several virulence genes derived from the CTXvarphi prophage and generally associated with pathogenic strains. Here, the presence of the O1-specific wbeN gene was investigated through PCR and found to be restricted to strain 17155, as well as one of the O26 strains, 4756, although neither strain was recognized by O1-specific antisera. The same two isolates were the only strains able to express the cholera toxin in culture, assayed by western blotting. They also possessed four repeats of the heptanucleotide TTTTGAT upstream of the ctxAB genes encoding the cholera toxin. The remaining strains possessed only two intact repeats, whereas pathogenic O1 possessed four to six repeats. To define their evolutionary relationships, selected 16S-23S intergenic rRNA spacer regions were sequenced from the various strains and the resulting sequences used to build phylogenetic trees. Strains 4756 and 17155 always clustered with control O1 strains, whereas the remaining O26 strains clustered separately. These results confirm that, despite their serological phenotype, these two strains are genotypically related to O1 strains and potentially able to produce epidemic cholera.
... The wbfDCB genes are similar to those of V. cholerae O139, which map in the rbf/capsule DNA locus. The functions of these genes are unknown (Bik et al., 1996; Chatterjee and Chaudhuri, 2004). Polysaccharide biosynthesis genes are often organized as large operons that produce large transcripts . ...
Vibrio anguillarum, part of the normal flora of the aquatic milieu, causes a fatal haemorrhagic septicaemia in marine fish. In this study, a rainbow trout model was used to characterize the colonization of fish skin by V. anguillarum. Within 5 h after infection, the bacterium penetrated the skin mucosal layer, attached to the scales within 12 h, and formed a biofilm by 24-48 h. Two divergently transcribed putative operons, orf1-wbfD-wbfC-wbfB and wza-wzb-wzc, were shown to play a role in skin colonization and virulence. The first operon encodes proteins of unknown function. The wza-wzb-wzc genes encode a secretin, tyrosine kinase and tyrosine phosphatase, respectively, which are similar to proteins in polysaccharide transport complexes. Compared with the wild type, polar mutations in wza, orf1 and wbfD caused a decrease in exopolysaccharide biosynthesis but not lipopolysaccharide biosynthesis. The wza and orf1 mutants did not attach to fish scales; whereas, the wbfD mutant had a wild-type phenotype. Moreover, the wza and orf1 mutants had decreased exoprotease activity, in particular the extracellular metalloprotease EmpA, as well as mucinase activity suggesting that these mutations also affect exoenzyme secretion. Thus, the exopolysaccharide transport system in V. anguillarum is required for attachment to fish skin, possibly preventing mechanical removal of bacteria via natural sloughing of mucus.
... in branched chains. More than 180 O and 80 K antigens have been described for E. coli alone (Schnaitman, 2001). Changes in basal antigen structure by phase variation, or modification of some sugars (e.g., acetylation) within the repeating units can lead to an enormous variation in surface structures. ...
The host cell recognition protein of the Escherichia coli bacteriophage HK620 is a large homotrimeric tailspike that cleaves the O18A1 type O antigen. The crystal structure of HK620 tailspike determined in the apo and substrate-bound form is reported by Barbirz et al. in this issue of Molecular Microbiology. Lacking detectable sequence similarity, the fold and overall organization of the HK620 tailspike are similar to those of the tailspikes of the related phages P22 and Sf6. The substrate-binding site is intrasubunit in P22 and HK620 tailspikes, but intersubunit in Sf6, demonstrating how phages can adapt the same protein fold to recognize different substrates.
Cholera, an acute secretory diarrhea, is caused by strains from a phylogenetically confined group within the Vibrio cholerae species, the pandemic cholera group (PCG). To date, the molecular and evolutionary factors that enable the isolated emergence of toxigenic V. cholerae from environmental populations remain mostly enigmatic. Comprehensive analyses of over 1,100 V. cholerae genomes, including novel environmental isolates from this study, reveal that the species consists of four major clades and several minor ones. PCG belongs to a large clade located within a lineage shared with environmental strains, the pandemic cholera lineage. This hierarchical classification provided us with a framework to unravel the eco-evolutionary dynamics of the genetic determinants associated with the emergence of toxigenic V. cholerae . Our analyses indicate that this phenomenon is largely dependent on the acquisition of unique modular gene clusters and allelic variations that confer a competitive advantage during intestinal colonization. We determined that certain PCG-associated alleles are essential for successful colonization whereas others provide a non-linear competitive advantage, acting as a critical bottleneck that elucidates the isolated emergence of PCG. For instance, toxigenic strains encoding non-PCG alleles of a) tcpF or b) a sextuple allelic exchange mutant for genes tcpA , toxT , VC0176 , VC1791 , rfbT and ompU , lose their ability to colonize the intestine. Interestingly, these alleles do not play a role in the colonization of model environmental reservoirs. Our study uncovers the evolutionary roots of toxigenic V. cholerae and offers a tractable approach for investigating the emergence of pathogenic clones within an environmental population.
SIGNIFICANCE
The underlying factors that lead to specific strains within a species to emerge as human pathogens remain mostly enigmatic. Toxigenic clones of the cholera agent, Vibrio cholerae , are encompassed within one phylogenomic clade, the pandemic cholera group (PCG). Here, we investigate the molecular and evolutionary factors that explain the confined nature of this group. Our analyses determined that the emergence of PCG is largely dependent on the acquisition of unique modular gene clusters and allelic variations that confer a competitive advantage during intestinal colonization. These allelic variations act as a critical bottleneck that elucidates the isolated emergence of PCG and provides a tractable blueprint for the study of the emergence of pathogenic clones within an environmental population.
Somatic antigen agglutinable type Vibrio cholerae of 1/139 (SAAT-Vc-1/139) members or O1/O139 Vibrio cholerae have been described by various investigators as choleragenic due to their increase pathogenic potential and production of choleragen. Reported cholera outbreak cases around the World have been associated with these choleragenic Vibrio cholerae with high case fatality involving various educational, human, governmental, animal and financial resources. These Vibrio members have shown genealogical and phylogenetic relationship with the somatic antigen non-agglutinable strains of 1/139 Vibrio cholerae (SANAS- Vc -1/139) or O1/O139 non-agglutinating Vibrio cholerae (O1/O139-NAG-Vc). The O1/O139-NAGVc members have been reported to be implicated in most cholera/cholera-like cases, sporadic cases, diarrhea, production of cholera toxin and transmitted via consumption and/or contact with contaminated water/seafood. Some reported cases of cholera outbreaks, sporadic cases and observed change in nature has also been tracable to these non-agglutinable Vibrio members (O1/O139-NAGVc) yet there is a sustained paucity of reports on the non-agglutinable V. cholerae members implication in cholera outbreak. The emergence of fulminating extraintestinal and systemic Vibriosis is another aspect of SANAS- Vc -1/139 involvement which has received low attention in terms of research driven interest. This review addresses the need to appraise and continue in research based studies on the somatic antigen non-serogroup agglutinable type-1/139 Vibrio cholerae members which are currently prevalent in water bodies, fruits/vegetables, foods and terrestrial environment. Our opinion is a summative of interest in integrated surveillance studies, management/control of cholera outbreaks as well as diarrhea and other disease related cases both in the rural, suburban and urban metropolis.
Somatic antigen agglutinable type-1/139 Vibrio cholerae (SAAT-1/139-Vc) members or O1/O139 V. cholerae have been described by various investigators as pathogenic due to their increasing virulence potential and production of choleragen. Reported cholera outbreak cases around the world have been associated with these choleragenic V. cholerae with high case fatality affecting various human and animals. These virulent Vibrio members have shown genealogical and phylogenetic relationship with the avirulent somatic antigen non-agglutinable strains of 1/139 V. cholerae (SANAS-1/139- Vc) or O1/O139 non-agglutinating V. cholerae (O1/O139-NAG-Vc). Reports on implication of O1/O139-NAGVc members in most sporadic cholera/cholera-like cases of diarrhea, production of cholera toxin and transmission via consumption and/or contact with contaminated water/seafood are currently on the rise. Some reported sporadic cases of cholera outbreaks and observed change in nature has also been tracable to these non-agglutinable Vibrio members (O1/O139-NAGVc) yet there is a sustained paucity of research interest on the non-agglutinable V. cholerae members. The emergence of fulminating extraintestinal and systemic vibriosis is another aspect of SANAS-1/139- Vc implication which has received low attention in terms of research driven interest. This review addresses the need to appraise and continually expand research based studies on the somatic antigen non-serogroup agglutinable type-1/139 V.cholerae members which are currently prevalent in studies of water bodies, fruits/vegetables, foods and terrestrial environment. Our opinion is amassed from interest in integrated surveillance studies, management/control of cholera outbreaks as well as diarrhea and other disease-related cases both in the rural, suburban and urban metropolis.
The AB5 type toxin produced by the Vibrio cholerae bacterium is the causative agent of the cholera disease. The cholera toxin (CT) has been shown to bind specifically to GM1 glycolipids on the membrane surface. This binding of CT to the membrane is the initial step in its endocytosis and has been postulated to cause significant disruption to the membrane structure. In this work, we have carried out a combination of coarse-grain and atomistic simulations to study the binding of CT to a membrane modelled as an asymmetrical GM1-DPPC bilayer. Simulation results indicate that the toxin binds to the membrane through only three of its five B subunits, in effect resulting in a tilted bound configuration. Additionally, the binding of the CT can increase the area per lipid of GM1 leaflet, which in turn can cause the membrane regions interacting with the bound subunits to experience significant bilayer thinning and lipid tail disorder across both the leaflets.
Vibrio cholerae O1 employs the ATP-binding cassette (ABC) transporter-dependent pathway for O antigen biosynthesis. Different from highly studied Klebsiella pneumoniae and Escherichia coli, it was reported that initial reaction of O antigen biosynthesis in V. cholerae O1 may be involved in WbeW protein, which is predicted to be a galactosyltransferase. In this work, we report expression and characterization of WbeW enzyme. WbeW was expressed as membrane-associated form in E. coli and it was obtained with high purity. The enzyme had a function of transferring Gal-1-P from UDP-Gal to Und-P, implying that initial glycan of O antigen in V. cholerae O1 can be composed of a Gal residue. © 2015, The Korean Society for Biotechnology and Bioengineering and Springer-Verlag Berlin Heidelberg.
Many bacterial and archaeal lineages have a history of extensive and ongoing horizontal gene transfer and loss, as evidenced by the large differences in genome content even among otherwise closely related isolates. How ecologically cohesive populations might evolve and be maintained under such conditions of rapid gene turnover has remained controversial. Here we synthesize recent literature demonstrating the importance of habitat and niche in structuring horizontal gene transfer. This leads to a model of ecological speciation via gradual genetic isolation triggered by differential habitat-association of nascent populations. Further, we hypothesize that subpopulations can evolve through local gene-exchange networks by tapping into a gene pool that is adaptive towards local, continuously changing organismic interactions and is, to a large degree, responsible for the observed rapid gene turnover. Overall, these insights help to explain how bacteria and archaea form populations that display both ecological cohesion and high genomic diversity.
Vibrio cholerae elaborates three types of polysaccharide structures: lipopolysaccharide (LPS), a component of which is the O-polysaccharide or O-antigen, capsular polysaccharide (CPS) or K-antigen, and “rugose” polysaccharide also known as exopolysaccharide (EPS) or Vibrio polysaccharide (VPS). The major protective antigen for V. cholerae is the O-antigen. A strain typing scheme based on the somatic O-antigen has been in use for a number of years. There are 206 serogroups identified so far and of these only O1 and O139 are known to cause epidemic/pandemic cholera, although a handful of non-O1/non-O139 strains are known to possess the major virulence factors. The O-antigen diversity is due to the number and composition of monosaccharide components, linkages, addition of non-sugar moieties, modal length of the polysaccharide chain, and biosynthesis mechanisms. The genetic basis of this diversity is just beginning to be understood with the sequencing of a number of gene clusters that encode O-polysaccharide (OPS)/capsule structures. In this review, we summarize our current knowledge on the biochemical composition and structure of some of the O-polysaccharides, genes involved in their biosynthesis, and touch upon the role of horizontal gene transfer in creating this diversity and possible mechanisms that may be operative in this process. We highlight the fact that the distinction between OPS and CPS seems to be less evident in V. cholerae than in other species since the genes encoding these structures are shared and map in the same region of the genome. We also describe our current understanding of the genetics and regulation of EPS/VPS synthesis and its role in biofilm formation and environmental survival of V. cholerae.
O-antigen biosynthetic (wbf) regions for Vibrio cholerae serogroups O5, O8, and O108 were isolated and sequenced. Sequences were compared to those of other published V. cholerae O-antigen regions. These wbf regions showed a high degree of heterogeneity both in gene content and in gene order. Genes identified frequently showed
greater similarities to polysaccharide biosynthesis genes from species other than V. cholerae. Our results demonstrate the plasticity of O-antigen genes in V. cholerae, the diversity of the genetic pool from which they are drawn, and the likelihood that new pandemic serogroups will emerge.
AM-19226 is a pathogenic O39 serogroup Vibrio cholerae strain that lacks the typical virulence factors for colonization (toxin-coregulated pilus [TCP]) and toxin production (cholera
toxin [CT]) and instead encodes a type III secretion system (T3SS). The mechanism of pathogenesis is unknown, and few effector
proteins have been identified. We therefore undertook a survey of the open reading frames (ORFs) within the ∼49.7-kb T3SS
genomic island to identify potential effector proteins. We identified 15 ORFs for their ability to inhibit growth when expressed
in yeast and then used a β-lactamase (TEM1) fusion reporter system to demonstrate that 11 proteins were bona fide effectors translocated into HeLa cells in vitro in a T3SS-dependent manner. One effector, which we named VopX (A33_1663), is conserved only in V. cholerae and Vibrio parahaemolyticus T3SS-positive strains and has not been previously studied. A vopX deletion reduces the ability of strain AM-19226 to colonize in vivo, and the bile-induced expression of a vopX-lacZ transcriptional fusion in vitro is regulated by the T3SS-encoded transcriptional regulators VttRA and VttRB. An RLM1 yeast deletion strain rescued the growth inhibition induced by VopX expression, suggesting that VopX interacts with components
of the cell wall integrity mitogen-activated protein kinase (MAPK) pathway. The collective results show that the V. cholerae T3SS encodes multiple effector proteins, one of which likely has novel activities that contribute to disease via interference
with eukaryotic signaling pathways.
The O-antigen is a highly diverse structure expressed on the outer surface of Gram-negative bacteria. The products responsible for O-antigen synthesis are encoded in the wbe region, which exhibits extensive genetic diversity. While heterogeneous O-antigens are observed within Vibrio species, characterization of these structures has been devoted almost exclusively to pathogens. Here, we investigate O-antigen diversity among coastal marine Vibrio splendidus-like isolates. The wbe region was first identified and characterized using the sequenced genomes of strains LGP32, 12B01 and Med222. These regions were genetically diverse, reflective of their expressed O-antigen. Additional isolates from physically distinct habitats in Plum Island Estuary (MA, USA), including within animal hosts and on suspended particles, were further characterized based on multilocus sequence analysis (MLSA) and O-antigen profiles. Results showed serotype diversity within an ecological setting. Among 48 isolates which were identical in three MLSA genes, 41 showed gpm genetic diversity, a gene closely linked to the wbe locus, and at least 12 expressed different O-antigen profiles further suggesting wbe genetic diversity. Our results demonstrate O-antigen hyper-variability among these environmental strains and suggest that frequent lateral gene transfer generates wbe extensive diversity among V. splendidus and its close relatives.
The O antigen, consisting of many repeats of an oligosaccharide unit, is part of the lipopolysaccharide (LPS) in the outer membrane of Gram-negative bacteria. It is on the cell surface and appears to be a major target for both immune system and bacteriophages, and therefore becomes one of the most variable cell constituents. The variability of the O antigen provides the major basis for serotyping schemes of Gram-negative bacteria. The genes responsible for the synthesis of O antigen are usually in a single cluster known as O antigen gene cluster, and their location on the chromosome within a species is generally conserved. Three O antigen biosynthesis pathways including Wzx/Wzy, ABC-transporter and Synthase have been discovered. In this chapter, the traditional and molecular O serotyping schemes are compared, O antigen structures and gene clusters of well-studied species are described, processes for formation and distribution of the variety of O antigens are discussed, and finally, the role of O antigen in bacterial virulence.
Obwohl inzwischen über 200 verschiedene Serogruppen von V. cholerae bekannt sind, wurden Ausbrüche der Cholera hauptsächlich von Stämmen der unbekapselten Serogruppe O1 und der bekapselten Serogruppe O139 verursacht. Die Komponenten des Lipopolysaccharids (LPS) von O1 und O139, sowie die Kapsel von O139 tragen zur Kolonisierung im Gastrointestinaltrakt bei. Um die Funktion des LPS und der Kapsel als Virulenzfaktor näher zu untersuchen, wurden Adhäsionsstudien mit definierten LPS- und/ oder Kapsel-Mutanten beider pathogener Serogruppen durchgeführt. Dazu wurde die Mukus-produzierende humane Darmzelllinie HT-29-Rev MTX verwendet. Im Vergleich zum jeweiligen Wildtyp (Wt) konnte für eine O Antigen-Mutante von O1 eine Reduktion um 85%, für eine O Antigen/ Kapsel-Mutante von O139 eine Reduktion um 70% in der Adhäsionsrate festgestellt werden. Ein Beitrag von ToxR regulierten Genprodukten ist ebenfalls möglich. Weiterhin wurden mit WavJ und WavD zwei Genprodukte der Kernoligosaccharid -Biosynthese charakterisiert, welche bislang nur in dem wa*-Genclustertyp 1 der klinischen Isolate nachgewiesen worden sind. Es konnte gezeigt werden, dass beide Genprodukte an der Biosynthese des Kern OS beteiligt sind, wobei WavJ mit hoher Wahrscheinlichkeit die Heptosyl-IV-Transferase darstellt. Die wavDJ-Doppelmutanten beider Serogruppen wiesen eine erhöhte Sensitivität gegenüber Novobiocin auf. Dagegen konnte eine Attenuation der Mutanten im Mausmodell nur für die Serogruppe O139 demonstriert werden. Ein Schlüsselenzym der LPS-Biosynthese stellt die Oberflächenpolymer:Lipid A-Kern OS-Ligase (WaaL), kurz O Antigen-Ligase genannt, dar. In dieser Arbeit wurden die in der Primärstruktur stark unterschiedlichen Ligasen aus einem pathogenen (P27459) und apathogenen (V194) V. cholerae Isolat strukturell und funktionell analysiert. Es wurde gezeigt, dass die Aktivität beider Ligasen von der Anwesenheit eines N-Acetylglucosamins (GlcNAc) im Kernoligosaccharid abhängig ist. Dieser Zucker wird durch das Genprodukt WavL transferiert, welchem in dieser Arbeit die Aktivität einer N-Acetylglucosaminyltransferase zugeordnet werden konnte. Das Gen wavL wurde in allen zur Verfügung stehenden V. cholerae Isolaten nachgewiesen und stellt wahrscheinlich eine generelle Voraussetzung des Kern OS für eine O Antigen-Anheftung dar. Im Gegensatz dazu, diskriminiert die An- bzw. Abwesenheit einer Galaktose (Gal) im Kern OS die Spezifität der Ligasen von V. cholerae P27459 bzw. V194. Dabei ist die Aktivität der Galaktosyltransferase WavM, essentiell für die Aktivität der Gal-abhängigen Ligase von V194. Die Gal-unabhängige Ligase von P27459 wird hingegen durch die Anwesenheit von Gal im Kern OS inhibiert. Hybridfusionen der beiden Ligasen deuten an, dass die Erkennungsdomäne für Gal in der C-terminalen Hälfte lokalisiert ist. Erstmals wurde die Topologie einer Ligase durch PhoA- und LacZ-Fusionen analysiert. Die Suche nach konservierten Aminosäuren (AS) in verschiedenen Ligasen führte zur Identifizierung der Motive R(X3)L und H(X10)G in zwei periplasmatischen Schleife. Ein Austausch des R oder des H in diesen Motiven führte zum Verlust der Ligase-Aktiviät von WaaL aus V. cholerae und S. enterica. Damit geben diese Motive einen ersten Hinweis auf das aktive Zentrum des Enzyms. Desweiteren wurde nach möglichen O Antigen-Transportern bei V. cholerae gesucht, welche bislang noch nicht identifiziert worden waren. Über die Anpassungen von V. cholerae an aquatische Ökosysteme, insbesondere hinsichtlich der wechselnden Osmolarität, ist nahezu nichts bekannt. Durch ein in dieser Arbeit konstruiertes und etabliertes Transposonsystem konnten 3600 Mutanten erzeugt und auf Wachstumsdefekte unter hypertonischen Bedingungen untersucht werden. Eine dieser osmosensitiven Mutanten wies eine Insertion in dem Locus VCA0565 auf, welcher für eine putative Sensor-Histidinkinase kodiert. Mit dem Regulator, kodiert durch VCA0566, stellt VCA0565 das putative Zwei-Komponentensystem OsmRK dar. Transkriptomanalysen von osmR/ K-Mutanten lieferten keine Erklärung des Wachstumsdefekts unter hypertonischen Bedingungen, zeigten aber eine Vernetzung der durch OsmR/ K regulierten Gene mit dem ToxR-Regulon auf. Analysen der Außenmembran demonstrierten, dass eine Mutation von osmR/ K zu einer Repression von OmpU unter hohen Salzkonzentrationen führt. Vergleichende Experimente mit weiteren Mutanten deuteten an, dass es in osmR/ K- und toxS-Mutanten unter erhöhten Salzkonzentrationen zur Degradation von ToxR kommt. Während die Deregulation von OmpU in osmR/ K-Mutanten nur unter Salzstress zu beobachten war, führte in der toxS-Mutante auch ein Membranstress durch Zugabe von Protamin zu einer Repression von OmpU. Die zu OsmR/ K nah verwandten putativen Zwei-Komponentensysteme EnvZ/ OmpR und VCA0257/ VCA0256 hatten unter keiner der getesteten Bedingungen einen Einfluss auf die Proteine der AM. Weiterhin wurde eine C-terminale Degradation von HutA unter hypertonischen Bedingungen aufgedeckt. Although, more than 200 serogroups of V. cholerae.were identified, however, only the strains of the non-encapsulated O1 and the encapsulated O139 serogroups were found to be responsible for cholera epidemics. The components of the LPS of O1 and O139 play a crucial role in the colonization of the gastrointestinal tract. To analyze the contribution of the LPS and the capsule in the adhesion to epithelial cells, mucus layer attachment studies using defined O antigen and/ or capsule mutants of both serogroups and the human intestinal cell line HT29-Rev MTX were performed. In case of the O antigen mutant of O1 a 85% and for the O antigen and capsule mutant of O139 a 70% reduction in the adhesion rate was determined compared to wild type. It is likely that ToxR regulated gene products also contribute to the adhesion, since a toxR-mutant of O1 showed a 3-fold reduction in the adhesion rate. In addition the two gene products of the core oligosaccharide biosynthesis, WavJ and WavD, were characterized. So far the corresponding genes could only be found in the wa*-gene cluster type 1 of clinical isolates. It could be demonstrated, that single and double knockout mutants have an effect on core oligosaccharide biosynthesis in both serogroups. Based on bioinformatical data it is likely that WavJ represents the heptosyl-IV-transferase. Double mutants in wavJ and wavD of both serogroups showed an attenuated growth in the presence of novobiocin, whereas only the mutants in O139 demonstrated reduced colonization in the in vivo mouse model. The surface polymer:lipid A-core ligase (WaaL), also called the O antigen ligase, is a key enzyme in the LPS biosynthesis of Gram- bacteria. Part of this work focused on the structural and functional characteristics associated with the recognition of the core oligosaccharide of two distantly related ligases of a virulent (P27459) and an environmental (V194) V. cholerae isolate. It was demonstrated that the activity of both ligases is dependent on the presence of N-acetylglucosamine, which is attached to the core oligosaccharide by the WavL glycosyltransferase. The gene wavL could be found in all V. cholerae isolates so far. In contrast, an additional sugar substitution, i.e. galactose, which is transfered by the WavM galactosyltransferase, discriminates the core oligosaccharide specificity of the ligases of P27459 and V194. The activity of WavM is essential for the activity of the galactose-dependent ligase of V194, whereas it hinders the galactose-independent ligase of P27459 to transfer the O antigen onto the core oligosaccharide. WaaL protein hybrids between galactose dependent and non-dependent ligases indicate that the galactose recognition site is located in the C-terminal half. Using PhoA and LacZ fusions the topology of the ligase of P27459 was determined. Amino acid sequence alignments of WaaL proteins identified the distinct conserved motifs R(X3)L and H(X10)G in two periplasmic loops. By site directed mutagenesis of the histidine and arginine residues within these motifs, an abortism of O antigen transfer reaction for WaaLs of V. cholerae and Salmonella enterica was found. Furthermore the putative O antigen-transport systems of V. cholerae were investigated. In this work a new transposon system was constructed and established, resulting in 3600 mutants, which were screened for growth defects under hypertonic conditions. One of these mutants had an insertion in locus VCA0565, which encodes a putative sensor histidine kinase. In combination with the transcriptional regulator, encoded by VCA0566, they represent the putative two-component system OsmRK. Comparing the transcriptom of osmR/ K-mutants to the wild type revealed no explanation for the osmosensitive phenotype, but showed some interaction between the regulon of OsmR/ K and ToxR. Analysis of the outer membrane demonstrated, that a mutation in osmR/ K results in a repression of OmpU under hypertonic conditions. Comparative experiments, including additional mutants indicated a degradation of ToxR in osmR/ K- and toxS-mutants in presence of high salt concentrations. In contrast to osmR/ K-mutants, in the toxS-mutant the repression of OmpU could be also observed by a different membrane stress caused by protamine. In addition, the analysis of the outer membrane proteins revealed a C-terminal degradation of HutA under hypertonic stress conditions.
Vibriocidal antibody assay has been a surrogate standard assay in the evaluation of cholera vaccine efficacy because it has a good correlation with protection. Although the optical density-based vibriocidal assay in a 96-well microtiter-plate format is widely used in clinical trials, it has limitations as vibriocidal titers are altered by incubation time and samples with the same end-point titers could have potentially different vibriocidal kinetics. In the present study, we developed an improved agar-plate assay coupled with an automated colony counting system. Through testing 30 pairs of human sera from vaccinees administered with a cholera vaccine or placebo, these two assays showed good correlations for the vibriocidal titers and fold increases in titers between pre- and post-vaccinated sera as determined by the Pearson correlation coefficient and the Regression coefficient. Notably, the newly-developed semi-automated assay demonstrated that serum samples with the same end-point titers turned out to have distinct vibriocidal kinetics that were not distinguishable by the microtiter-plate assay. The semi-automated assay responded specifically to Vibrio cholerae but not to irrelevant bacteria such as Salmonella typhi and Escherichia coli. These results demonstrate that the semi-automated assay provides better sensitivity, accuracy, and stability of the assay results with minimized efforts than conventional microtiter-plate assay and could provide a useful tool as an in vitro surrogate assay for the evaluation of cholera vaccine efficacy.
In 1992 a new Vibrio cholerae strain, designated V. cholerae O139 Bengal, emerged which has been responsible for large outbreaks of cholera in India and Bangladesh. Previously, we have shown that this strain arose from a V. cholerae O1 strain by the acquisition of novel DNA. Sequence analysis revealed that the novel DNA is flanked by two genes, rfaD and rfbQRS, which are also found in O1 strains. The mosaic structure of rfaDvco139 indicated that it was one of the regions involved in recombination between donor and acceptor DNA. However, sequence divergence between the O1 and O139 rfbQRS genes indicated that the second recombination site between donor and O1-acceptor DNA is probably located downstream of rfbDvco139. The DNA region between rfaDvco139 and rfbQRSvco139, designated otn, contained seven open reading frames (ORFs). Two ORFs, otnA and otnB, showed homology with genes involved in cell-wall polysaccharide synthesis. Mutations in otnA and otnB indicated that they are required for capsule synthesis but not lipopolysaccharide synthesis. The otn DNA is also found inV. cholerae O69 and O141 strains, and the organization of this DNA was essentially identical to that in the O139 strain. However, sequence divergence of the otnAB genes indicated that the O139 otn DNA region was not derived from the O69 or O141 strains. No antigenic relationship was found between the different V. cholerae serotypes carrying otn DNA, so the genes determining the antigenic specificity of the O antigen or capsule must be located outside the otn DNA. The O139 otn DNA contained a JUMPstart sequence, which is associated with polysaccharide-synthetic genes in several bacterial species. Furthermore, a repeat motif was observed in extragenic regions. A number of observations suggest that these sequences may facilitate gene flow between V. cholerae strains and the assembly of clusters of functionally related genes.
Evidence suggests that a repertoire of Vibrio cholerae genes are differentially expressed in vivo, and regulation of virulence factors in vivo may follow a different pathway. Our work was aimed at characterization of in vivo-grown bacteria and identification of genes that are differentially expressed following infection by RNA arbitrarily primed (RAP)-PCR fingerprinting. The ligated rabbit ileal loop model was used. The motility of in vivo-grown bacteria increased by 350% over that of in vitro-grown bacteria. Also, the in vivo-grown cells were more resistant to killing by human serum. By using the RAP-PCR strategy, five differentially expressed transcripts were identified. Two in vitro-induced transcripts encoded polypeptides for the leucine tRNA synthatase and the 50S ribosomal protein, and the three in vivo-induced transcripts encoded the SucA and MurE proteins and a polypeptide of unknown function. MurE is a protein involved in the peptidoglycan biosynthetic pathway. The lytic profiles of in vivo- and in vitro-grown cells suspended in distilled water were compared; the former was found to be slightly less sensitive to lysis. Ultrathin sections of both cells observed under the transmission electron microscope revealed that in contrast to the usual wavy discontinuous membrane structure of the in vitro-grown cells, in vivo-grown cells had a more rigid, clearly visible double-layered structure. The V. cholerae murE gene was cloned and sequenced. The sequence contained an open reading frame of 1,488 nucleotides with its own ribosome-binding site. A plasmid containing the murE gene of V. cholerae was transformed into V. cholerae 569B, and a transformed strain, 569BME, containing the plasmid was obtained. Ultrathin sections of 569BME viewed under a transmission electron microscope revealed a slightly more rigid cell wall than that of wild-type 569B. When V. cholerae 569B and 569BME cells were injected separately into ligated rabbit ileal loops, the transformed cells had a preference for growth in the ileal loops versus laboratory conditions.
Vibrio cholerae O1 exists as two major serotypes, Inaba and Ogawa, which are associated with the O antigen of the lipopolysaccharide and are capable of unequal reciprocal interconversion. The 20-kilobase rfb regions encoding O-antigen biosynthesis in strains 569B (Inaba) and O17 (Ogawa) have been cloned in Escherichia coli K-12 and the nucleotide sequences have been determined. Besides several base substitutions and a small deletion in the 569B sequence relative to O17, there is a single nucleotide change resulting in a TGA stop codon within the gene for the 32-kDa RfbT protein. We have demonstrated that rfbT is responsible for serotype conversion (Inaba to Ogawa). The construction of a specific rfbT mutation in the Ogawa strain O17, and the ability of the gene from O17 to complement Inaba strains to Ogawa, confirmed rfbT as the gene required for the Ogawa serotype. By Southern hybridization and sequencing of PCR products of a number of strains, we have shown that the changes observed in one Inaba strain (569B) are not conserved in other Inaba strains. This may explain why some Inaba strains are able to convert to Ogawa whereas others are not. The protein encoded by rfbT has been identified and expressed in E. coli K-12 using a phage T7 expression system. Amino-terminal analysis of partially purified protein has identified the translational start of the protein. Primer extension studies have enabled the 5' end of the mRNA to be defined. It exists as a separate transcript from the rest of the rfb region, and the distinctive G + C content of rfbT suggests that it has been acquired from a non-Vibrio source.
Expression of more than 17 virulence genes in Vibrio cholerae is under the coordinate control of the ToxR protein. ToxR is a transmembrane protein that binds to and activates the promoter of the operon encoding cholera toxin. As yet, the ability of ToxR to activate directly other genes in this regulon has not been demonstrated. We have cloned a gene called toxT from V. cholerae 569B; the toxT gene product, like ToxR, can activate the ctx promoter in Escherichia coli. In addition, expression of other genes identified as members of the ToxR regulon (tcpA, tcpI, aldA, and tagA) can be activated in E. coli by the toxT gene product but not by ToxR. When expressed from a constitutive promoter, the toxT gene product partially suppresses the ToxR- phenotype of a toxR deletion mutant of V. cholerae. The level of toxT mRNA is greatly reduced in a toxR mutant of V. cholerae. In addition, growth conditions under which the ToxR regulon is not expressed also repress the synthesis of toxT mRNA. These results suggest that ToxR controls transcription of toxT, whose product in turn is directly responsible for activation of several virulence genes under ToxR control.
The gene clusters that determine the biosynthesis of both the Inaba and Ogawa serotypes of the O antigen of the lipopolysaccharide of Vibrio cholerae were cloned and expressed in Escherichia coli K-12. Restriction analysis of the clones demonstrated that about 15 kilobases were common to all clones and a further 5 kilobases were common to the Ogawa clones. The O antigens expressed by E. coli K-12 had the specificity of V. cholerae. Antibodies raised against E. coli K-12 that harbor one of these clones, pPM1001 (Inaba), were as highly protective in the infant mouse model system as were antibodies to V. cholerae itself. Introduction of such clones into suitable carrier strains could be expected to produce a good oral immunogen against cholera.
We describe the cloning of the toxS gene from Vibrio cholerae E1 Tor strain E7946. This gene lies downstream from the toxR gene, which encodes the transcriptional activator for the cholera toxin (ctx) operon in V. cholerae. We show that ToxS acts in conjunction with ToxR to activate expression of the ctx operon in Escherichia coli. The classical strain 569B, which is attenuated for virulance but which synthesizes high levels of cholera toxin in vitro, carries a deletion of 1.2 kilobase pairs of DNA, downstream from the toxR gene, which removes toxS. We present evidence that toxS is the downstream gene in an operon with toxR.
Vibrio cholerae strains secrete a phenolate-type siderophore when grown in low-iron medium. The siderophore was detected as early as 3.5 h after downshift to iron-poor medium, and it continued to accumulate in the medium as the cells entered stationary phase. Two clinical isolates and an environmental isolate were examined for the amount of siderophore produced. The environmental isolate produced more siderophore and continued to secrete it at concentrations of iron that repressed synthesis in the clinical isolates. Concomitant with production of siderophore, at least six new proteins were seen in the outer membranes of iron starved cells. One of the proteins was large (200,000 Mr [220K]) and appeared to be loosely associated with the outer membrane. The other five proteins had approximate Mr values of 77K, 76K, 75K, 73K, and 62K. The 62K protein, like the 40K major outer membrane protein, was heat modifiable. One or more of these proteins may be a component of the receptor for the iron-siderophore complex.
The recent emergence of a pathogenic new non-O1 serotype (O139) of Vibrio cholerae has led to numerous studies in an attempt to identify the origins of this new strain. Our studies indicate that O139 strains have clear differences in the surface polysaccharides when compared with O1 strains: the lipopolysaccharide can be described as semi-rough. Southern hybridization with the O1 rfb region demonstrates that O139 strains no longer contain any of the rfb genes required for the synthesis of the O1 O-antigen or its modification and also lack at least 6 kb of additional contiguous DNA. However, O139 strains have retained rfaD and have a single open reading frame closely related to three small open reading frames of the O1 rfb region. This region is closely related to the H-repeat of Escherichia coli and to the transposases of a number of insertion sequence elements and has all the features of an insertion sequence element that has been designated VcIS1. Transposon insertion mutants defective in O139 O-antigen (and capsule) biosynthesis map to the same fragment as VcIS1. Preliminary sequence data of complementing clones indicate that this DNA encodes a galactosyl-transferase and other enzymes for the utilization of galactose in polysaccharide biosynthesis. We propose a mechanism by which both the Ogawa serotype of O1 strains and the O139 serotype strains may have evolved.
Cholera has been feared since antiquity. Since 1817 there have been seven global cholera pandemics. Cholera is characterized by the rapid onset of profuse, watery diarrhea, with dehydration, circulatory collapse, and death in ∼40% of untreated patients. Oral rehydration therapy has dramatically changed cholera death rates, which can now be kept under 1%. Cholera is caused by Vibrio cholerae strains that produce cholera toxin. Milder diarrhea can be caused by other strains of V. cholerae and by Vibrio parahaemolyticus. The latter, together with V. vulnificus, also cause septicemia in patients with liver disease or immunosuppression, with fatality rates approaching 50%.
Vibrio cholerae and V. anguillarum are recognized as aquatic-borne human and fish pathogens, respectively. Based upon analyses of several genes and the presence of novel genetic elements it seems that these two species are very closely related. Studies in this laboratory have identified an association of IS1358 with rfb and capsule loci in these two species. The most recent findings suggest that IS1358 is associated with the rfb region in V. cholerae O1 and O139 and in V. anguillarum O1 and O2. In addition, the rfb region in both V. cholerae serogroups and in V. anguillarum O1 is limited at one end by gmhD. These features make it feasible to envisage a mechanism by which the evolution of new rfb genes is taking place involving IS1358 and the region around gmhD. Furthermore, it is possible to envisage that there is or has been an exchange of genetic material between these species leading to new rfb/capsule regions. This review examines the genetics and biosynthesis of the O-antigen and capsule of V. cholerae O1 and O139, as well as the V. anguillarum serogroup O1 and the role of IS1358. Throughout this review we have used the new nomenclature for rfb genes proposed by Reeves et al. (1996).
Pretreatment with sublethal doses of nitrofurantoin induced adaptive response in both Vibrio cholerae and Escherichia coli cells as indicated by their greater resistance to the subsequent challenging doses of the same drug. Adaptive response was maximum corresponding to pretreatment drug concentrations of 0.40 μg/ml and 0.015 μg/ml respectively for V. cholerae OGAWA 154 (wild type) and E. coli K-12 AB 2463 (recA−) cells. Adaptive response was inhibited by chloramphenicol (100 μg/ml) indicating the need of concomitant protein synthesis. Induction of adaptive response in recA deficient E. coli cells indicated that it was different from the conventional “SOS” response. Melting temperature of DNA of V. cholerae cells subjected to adaptive (0.4 μg/ml for 1 hr) and challenging (120 μg/ml for 1 hr) doses of nitrofurantoin (76°C) was closer to that of native DNA (75°C) vis-a-vis DNA isolated from nonadapted and drug treated cells (77.5°C). Also, DNA isolated from V. cholerae cells subjected to adaptive and challenging doses of the drug revealed the presence of fewer interstrand cross-links (16% reversible DNA) vis-a-vis DNA from nonadapted but drug treated cells (55% reversible DNA). Photomicrographic studies revealed that V. cholerae cells that were nonadapted but drug treated grew into long filamentous forms (4.25 ± 2.97 μm) whereas those subjected to both adaptive and challenge doses of the drug exhibited much less filamentation (2.08 D̀ 0.84 μm) vis-a-vis native cells (1.42 ± 0.5 μm). Similar results on DNA melting temperature, cross-links in DNA, and filamentation of cells were obtained for E. coli AB 2463 (recA−) cells subjected to adaptive and challenging treatments with nitrofurantoin. Almost equal degree of resistance against nitrofurantoin could be induced in both V. cholerae OGAWA 154 (wild type) and E. coli strain PJ3 (AB 1157 ada−) when these cells were pretreated with nontoxic doses of hydrogen peroxide or nitrofurantoin. Evidence obtained in this work on the nature of the nitrofurantoin induced adaptive response with particular references to the oxidative and/or alkylating DNA damages were discussed. Nitrofurantoin induced adaptive response appeared similar to that elicited by furazolidone in V. cholerae cells and appeared to be directed towards oxidative and not alkylating adaptive repair pathway. © 1992 Wiley-Liss, Inc.
Vibrio cholerae and V. anguillarum are recognized as aquatic-borne human and fish pathogens, respectively. Based upon analyses of several genes and the presence of novel genetic elements it seems that these two species are very closely related. Studies in this laboratory have identified an association of IS1358 with rfb and capsule loci in these two species. The most recent findings suggest that IS1358 is associated with the rfb region in V. cholerae O1 and O139 and in V. anguillarum O1 and O2. In addition, the rfb region in both V. cholerae serogroups and in V. anguillarum O1 is limited at one end by gmhD. These features make it feasible to envisage a mechanism by which the evolution of new rfb genes is taking place involving IS1358 and the region around gmhD. Furthermore, it is possible to envisage that there is or has been an exchange of genetic material between these species leading to new rfb/capsule regions. This review examines the genetics and biosynthesis of the O-antigen and capsule of V. cholerae O1 and O139, as well as the V. anguillarum serogroup O1 and the role of IS1358. Throughout this review we have used the new nomenclature for rfb genes proposed by Reeves et al. (1996).
Furazolidone induced the streptomycin-resistant (Str-r) forward mutation ofVibrio cholerae (classical) OGAWA 154 cells. The induced mutation frequency increased up to the furazolidone dose of 7.0 µg/ml×h and then gradually declined. Statistical analysis (t-test and variance analysis) revealed that the furazolidone-induced mutation ofV. cholerae cells at any of the doses studied was highly significant.
Comparison of global transcription profiles of Vibrio cholerae grown in vitro and in vivo revealed that 20% of the genome was repressed and about 5% was induced under in vivo conditions. Hybridization with the cloned genes revealed that the virulence genes ctx, toxR, toxT and tcpA were induced under in vivo conditions. Dissection of two in vivo induced cosmids identified another set of three genes homologous to cheY1 involved in motility and chemotaxis, pnuC encoding the major component of the nicotinamide mononucleotide transport system and icmF belonging to a cassette involved in multiplication inside host cells. These results demonstrate that the global transcription profile approach might be a powerful method for identification of differentially expressed transcripts under in vivo conditions.
Bacterial lipopolysaccharides (LPS) are unique and complex glycolipids that provide characteristic components of the outer membranes of Gram-negative bacteria. In LPS of the Enterobacteriaceae, the core oligosaccharide links a highly conserved lipid A to the antigenic O-polysaccharide. Structural diversity in the core oligosaccharide is limited by the constraints imposed by its essential role in outer membrane stability and provides a contrast to the hypervariable O-antigen. The genetics of core oligosaccharide biosynthesis in Salmonella and Escherichia coli K-12 have served as prototypes for studies on the LPS and lipo-oligosaccharides from a growing range of bacteria. However, despite the wealth of knowledge, there remains a number of unanswered questions, and direct experimental data are not yet available to define the precise mechanism of action of many gene products. Here we present a comparative analysis of the recently completed sequences of the major core oligosaccharide biosynthesis gene clusters from the five known core types in E. coli and the Ra core type of Salmonella enterica serovar Typhimurium and discuss advances in the understanding of the related biosynthetic pathways. Differences in these clusters reflect important structural variations in the outer core oligosaccharides and provide a basis for ascribing functions to the genes in these model clusters, whereas highly conserved regions within these clusters suggest a critical and unalterable function for the inner region of the core.
The membrane proteins ToxR and ToxS regulate a variety of genes associated with the virulence of Vibrio cholerae, the agent of human cholera. One of the ToxRS-regulated genes is the ompU gene, which encodes a porin that may also act as an adhesin. To begin to understand the mechanism of ompU transcription activation by ToxRS, we performed genetic and biochemical studies on the ompU promoter. Deletions with a 5′ end-point at or downstream of −128, relative to the start site for transcription, did not direct expression of a lacZ reporter gene in wild-type V. cholerae, although the −128 promoter fragment did direct ToxRS-dependent reporter gene activity under conditions of ToxR overexpression in E. coli. Consistent with the activation data is that membranes containing ToxR and ToxS caused a gel electrophoretic mobility shift when mixed at low concentrations with deletion fragments whose end-point is at −211, but not with −128 or −68 fragments. ToxRS membranes did shift the −128 fragment when added at higher concentrations. DNase I footprinting analysis of ompU promoter DNA complexed with ToxRS membranes demonstrated protection of three sites: an upstream site ranging from −238 to −139, and two downstream sites ranging from −116 to −58 and −53 to −24. Within the DNA protected from DNase I digestion by ToxRS membranes, there are no elements bearing similarity to those identified previously within the promoters of two other ToxR-dependent genes, ctxA and toxT. We suggest a model for transcription activation that involves sequential ToxR-binding events to distinct regions in the ompU promoter.
Evolution of complex regulatory pathways that control virulence factor expression in pathogenic bacteria indicates the importance to these organisms of being able to distinguish time and place. In the human intestinal pathogen Vibrio cholerae, control over many virulence genes identified to date is the responsibility of the ToxR protein. ToxR, in conjunction with a second regulatory protein called ToxS, directly activates the genes encoding the cholera toxin; other ToxR regulated genes are not activated directly by ToxR. For some of these genes, ToxR manifests its control through another activator called ToxT. Expression of toxT, which encodes a member of the AraC family of bacterial transcriptional activators, is ToxR dependent and is modulated by in vitro growth conditions that modulate expression of the ToxR virulence regulon. Thus, as in other regulatory circuits, co-ordinate expression of several genes in V. cholerae results from the activity of a cascading system of regulatory factors.
We evaluated a spontaneous mutant of Vibrio cholerae, which was avirulent in an infant mouse and had reduced expression of cholera toxin and TcpA in response to environmental signals. The toxR, toxS and toxT genes in the mutant were normal, but transcription of toxT was absent. A plasmid expressing wild-type tcpP and tcpH complemented the mutant. The mutation resulted from a frameshift in a string of nine G residues within tcpH; similar slipped-strand mutations in tcpH arose at a frequency of 10−4 during overnight growth and in the majority of colonies by the end of 5 days of growth in ToxR-inducing conditions. Transcription of tcpPH was regulated by temperature and pH independently of ToxR or ToxT. These results suggest that TcpH couples environmental signals (temperature and pH) to expression of the ToxR regulon, and provide a model for phase variation in the co-ordinate expression of cholera virulence factors.
Vibrio cholerae strains of the 01 serotype have been classified into three subclasses, Ogawa, Inaba and Hikojima, which are associated with the O-antigen of the lipopolysaccharide (LPS). The DNA encoding the biosynthesis of the O-antigen, the rfb locus, has been cloned and analysed (Manning et al. 1986; Ward et al. 1987). Transposon mutagenesis of the Inaba and Ogawa strains of V. cholerae, using Tn5 or Tn2680 allowed the isolation of a series of independent mutants in each of these serotypes. Some of the insertions were mapped to the rfb region by Southern hybridization using the cloned rfb DNA as a probe, confirming this location to be responsible for both O-antigen production and serotype specificity. The other insertions allowed a second region to be identified which is involved in V. cholerae LPS biosynthesis.
Several studies have shown that the emergence of the O139 serogroup of Vibrio cholerae is a result of horizontal gene transfer of a fragment of DNA from a serogroup other than O1 into the region responsible for O-antigen biosynthesis of the seventh pandemic V. cholerae O1 biotype El Tor strain. In this study, we show that the gene cluster responsible for O-antigen biosynthesis of the O139 serogroup of V. cholerae is closely related to those of O22. When DNA fragments derived from O139 O-antigen biosynthesis gene region were used as probes, the entire O139 O-antigen biosynthesis gene region could be divided into five classes, designated as I–V based on the reactivity pattern of the probes against reference strains of V. cholerae representing serogroups O1–O193. Class IV was specific to O139 serogroup, while classes I–III and class V were homologous to varying extents to some of the non-O1, non-O139 serogroups. Interestingly, the regions other than class IV were also conserved in the O22 serogroup. Long and accurate PCR was employed to determine if a simple deletion or substitution was involved to account for the difference in class IV between O139 and O22. A product of approx. 15 kb was amplified when O139 DNA was used as the template, while a product of approx. 12.5 kb was amplified when O22 DNA was used as the template, indicating that substitution but not deletion could account for the difference in the region between O22 and O139 serogroups. In order to precisely compare between the genes responsible for O-antigen biosynthesis of O139 and O22, the region responsible for O-antigen biosynthesis of O22 serogroup was cloned and analyzed. In concurrence with the results of the hybridization test, all regions were well conserved in O22 and O139 serogroups, although wbfA and the five or six genes comprising class IV in O22 and O139 serogroups, respectively, were exceptions. Again the genes in class IV in O22 were confirmed to be specific to O22 among the 155 ‘O’ serogroups of V. cholerae. These data suggest that the gene clusters responsible for O139 O-antigen biosynthesis are most similar to those of O22 and genes within class IV of O139, and O22 defines the unique O antigen of O139 or O22.
We examined the production of virulence factors of Vibrio cholerae O1 bacteria, and especially compared expression in vitro under near optimal growth conditions with that in vivo during experimental cholera infection. The results show that the in vitro formation of cholera toxin (CT), soluble hemagglutinin (SHA), colonizing pilus TCP, and the biotype associated hemagglutinins FSHA and MSHA, as well as of various cell envelope antigens often rather poorly reflected expression in vivo. For instance, production of CT by vibrios of classical biotype and of TCP by the El Tor biotype were enhanced in vivo, while production of SHA was instead suppressed. Likewise significant differences in cell envelope antigen composition were found between bacteria grown in vivo and in vitro. A more precise definition of the role of different postulated virulence factors in the processes of infection and immunity should include in vivo studies as outlined by this study.
The temporal expression patterns of the critical Vibrio cholerae virulence genes, tcpA and ctxA, were determined during infection using a recombinase reporter. TcpA was induced biphasically in two temporally and spatially separable events in the small intestine, whereas ctxA was induced monophasically only after, and remarkably, dependent upon, tcpA expression; however, this dependence was not observed during in vitro growth. The requirements of the virulence regulators, ToxR, TcpP, and ToxT, for expression of tcpA and ctxA were determined and were found to differ significantly during infection versus during growth in vitro. These results illustrate the importance of examining virulence gene expression in the context of bona fide host-pathogen interactions.
The pathogenesis of cholera begins with colonization of the host intestine by Vibrio cholerae. The toxin co-regulated pilus (TCP), a fimbrial structure produced by V. cholerae, is absolutely required for colonization (i.e. the persistence, survival and growth of V. cholerae in the upper intestinal milieu), but many other aspects of the colonization process are not well understood. In this study, we use signature-tagged transposon mutagenesis (STM) to conduct a screen for random insertion mutations that affect colonization in the suckling mouse model for cholera. Of approximately 1100 mutants screened, five mutants (approximately 0.5%) with transposon insertions in TCP biogenesis genes were isolated, validating the use of STM to identify attenuated mutants. Insertions in lipopolysaccharide, biotin and purine biosynthetic genes were also found to cause colonization defects. Similar results were observed for mutations in homologues of pta and ptfA, two genes involved in phosphate transfer. Finally, our screen identified several novel genes, disruption of which also caused colonization defects in the mouse model. These results demonstrate that STM is a powerful method for isolating colonization-defective mutants of V. cholerae.
After a lapse of 33 months, Vibrio cholerae O139, the new serogroup associated with cholera, has re-emerged in Calcutta, India and has become the dominant serogroup causing cholera from September 1996. In neighbouring Bangladesh, V. cholerae O1 biotype El Tor continues to be the dominant cause of cholera with the O139 serogroup accounting for only a small proportion of cases. Comparison of the phenotypic traits of representative O139 strains from Calcutta and Dhaka isolated between December 1996 and April 1997 showed similar phenotypic traits with the exception that Dhaka O139 strains were susceptible to streptomycin whilst Calcutta O139 strains were resistant. The Dhaka and Calcutta O139 strains displayed identical ribotypes but showed remarkable differences in the structure and organization of the CTX genetic element. In the Dhaka O139 strains, two copies of the CTX element were arranged in tandem and this resembled the pattern displayed by the 1992 epidemic strains of O139. The Calcutta O139 strains, in contrast, carried three copies of the CTX genetic element arranged in tandem with the loss of a conserved BglII restriction site in the RS1 element and the appearance of a new HindIII site in the same region. While there may be other factors, it appears that the reorganization of the CTX genetic element in the Calcutta O139 strains may have contributed to the resurgence of this serogroup in Calcutta.
An expanded linkage map of the Vibrio cholerae classical strain 162 chromosome has been prepared using a variety of new auxotrophic mutants. The chromosome consists of a single, linear linkage group. The map consists of 17 markers, which have been ordered; 20 mutational sites, which are tentatively ordered; five markers (ura-1, ser-2, mal-1, man-1, suc-1), which are linked but unordered; and three mutations (aro-2, cys-2 and cys-6) which showed little or no linkage. A proposal is made to standardize genetic nomenclature in V. cholerae genetic studies.
Ultraviolet-inactivated chlora phage PL163/10 underwent a maximum of abot 36% of photoreactivation within the host V. cholerae cells. UV-inactivated but non-infected V. cholerae cells also underwent the same degree of photoreactivation.
Evolution of complex regulatory pathways that control virulence factor expression in pathogenic bacteria indicates the importance to these organisms of being able to distinguish time and place. In the human intestinal pathogen Vibrio cholerae, control over many virulence genes identified to date is the responsibility of the ToxR protein. ToxR, in conjunction with a second regulatory protein called ToxS, directly activates the genes encoding the cholera toxin; other ToxR regulated genes are not activated directly by ToxR. For some of these genes, ToxR manifests its control through another activator called ToxT. Expression of toxT, which encodes a member of the AraC family of bacterial transcriptional activators, is ToxR dependent and is modulated by in vitro growth conditions that modulate expression of the ToxR virulence regulon. Thus, as in other regulatory circuits, co-ordinate expression of several genes in V. cholerae results from the activity of a cascading system of regulatory factors.
Pretreatment with sublethal doses of nitrofurantoin induced adaptive response in both Vibrio cholerae and Escherichia coli cells as indicated by their greater resistance to the subsequent challenging doses of the same drug. Adaptive response was maximum corresponding to pretreatment drug concentrations of 0.40 microgram/ml and 0.015 microgram/ml respectively for V. cholerae OGAWA 154 (wild type) and E. coli K-12 AB 2463 (recA-) cells. Adaptive response was inhibited by chloramphenicol (100 micrograms/ml) indicating the need of concomitant protein synthesis. Induction of adaptive response in recA deficient E. coli cells indicated that it was different from the conventional "SOS" response. Melting temperature of DNA of V. cholerae cells subjected to adaptive (0.4 microgram/ml for 1 hr) and challenging (120 micrograms/ml for 1 hr) doses of nitrofurantoin (76 degrees C) was closer to that of native DNA (75 degrees C) vis-a-vis DNA isolated from nonadapted and drug treated cells (77.5 degrees C). Also, DNA isolated from V. cholerae cells subjected to adaptive and challenging doses of the drug revealed the presence of fewer interstrand cross-links (16% reversible DNA) vis-a-vis DNA from nonadapted but drug treated cells (55% reversible DNA). Photomicrographic studies revealed that V. cholerae cells that were nonadapted but drug treated grew into long filamentous forms (4.25 +/- 2.97 micron) whereas those subjected to both adaptive and challenge doses of the drug exhibited much less filamentation (2.08 +/- 0.84 micron) vis-a-vis native cells (1.42 +/- 0.5 micron). Similar results on DNA melting temperature, cross-links in DNA, and filamentation of cells were obtained for E. coli AB 2463 (recA-) cells subjected to adaptive and challenging treatments with nitrofurantoin. Almost equal degree of resistance against nitrofurantoin could be induced in both V. cholerae OGAWA 154 (wild type) and E. coli strain PJ3 (AB 1157 ada-) when these cells were pretreated with nontoxic doses of hydrogen peroxide or nitrofurantoin. Evidence obtained in this work on the nature of the nitrofuratoin induced adaptive response with particular references to the oxidative and/or alkylating DNA damages were discussed. Nitrofuratoin induced adaptive response appeared similar to that elicited by furazolidone in V. cholerae cells and appeared to be directed towards oxidative and not alkylating adaptive repair pathway.
Vibrio cholerae lysogenic kappa phage was inactivated by X-ray (60 kV) in a dose-dependent manner, the inactivation dose leading to 37% survival (D37) in phosphate-buffered saline (PBS), pH 7.4, being 0.36 kGy. The phages were significantly protected against X-ray irradiation when histidine or cysteine or both were present in PBS or when phages were irradiated in nutrient broth. Maximum protection was offered when both histidine (10.0 mM) and cysteine (10.0 mM) were present in PBS (dose enhancement factor being 4.17). The X-irradiated kappa phages also underwent a small but significant Weigle reactivation and also Weigle mutagenesis in the UV-irradiated V. cholerae host H218Smr. The Weigle factor or the frequency of clear-plaque mutants increased with increasing UV dose, attained a maximum at a UV dose of 2.4 J m-2, and thereafter decreased gradually with a further increase of the UV dose. The X-ray dose (D)--survival (S) curves could be empirically described by the equation S = exp[-(aD + bD2)], where a and b are constants depending on the irradiation conditions, and a good agreement between the theoretical curves and experimental data was obtained.
Attenuated Vibrio cholerae vaccine strains specifically mutated in genes encoding cholera toxin (CT) are still capable of causing mild to moderate diarrhea. Culture supernatants of V. cholerae strains, both CT-positive and CT-negative, were examined in Ussing chambers, and a toxin was found that increases the permeability of the small intestinal mucosa by affecting the structure of the intercellular tight junction, or zonula occludens. The activity of this toxin is reversible, heat-labile, sensitive to protease digestion, and found in culture supernatant fractions containing molecules between 10 and 30 kDa in size. Production of this factor (named ZOT for zonula occludens toxin) correlates with diarrheagenicity of V. cholerae strains in volunteers and may represent another virulence factor of infectious diarrhea that must be eliminated to achieve a safe and effective live oral vaccine against cholera.
The toxR gene of Vibrio cholerae encodes a transmembrane, DNA-binding protein that positively controls transcription of the genes for cholera toxin, TCP pili, and other proteins important in cholera pathogenesis. Nucleotide sequence analysis of the toxR upstream region has revealed that the heat shock gene htpG, encoding the bacterial homologue of the eukaryotic Hsp90 protein, was located immediately upstream and was divergently transcribed from toxR. Using lacZ transcriptional fusions, we have shown that neither toxR nor htpG expression was regulated by ToxR. However, the growth temperature had a coordinate but reciprocal effect on the expression from both the toxR and htpG promoters in V. cholerae; the decrease of toxR expression between 22 degrees C and 37 degrees C was proportional to the increase of htpG expression observed within that temperature range. A similar pattern of expression of the htpG and toxR promoters was observed in the heterologous host Escherichia coli, where this regulation was controlled by the level of the E. coli rpoH (htpR) gene product, sigma-32. Consistent with the temperature-regulated expression of the V. cholerae htpG promoter in E. coli, a sequence similar to the consensus sequence of the E. coli heat shock promoters was detected upstream from the V. cholerae htpG gene. We propose a model in which the regulation of toxR expression by temperature is controlled by the level of sigma-32 (RpoH) RNA polymerase.
We have previously described the cosmid cloning of the genes determining the biosynthesis of the Inaba and Ogawa O-antigens of the lipopolysaccharides of Vibrio cholerae O1 (Manning et al., 1986). By Southern hybridization analysis of chromosomal and cosmid DNA, and heteroduplex analysis between the clones we have been able to precisely define the region of contiguous chromosomal DNA in the vicinity of the O-antigen-encoding region. These data and comparison of end points of clones and of deletion derivatives demonstrate that at least 16 kb of a 19-kb SstI fragment is required to encode O-antigen biosynthesis. Expression of O-antigen is independent of the orientation of this SstI fragment with respect to cloning vectors suggesting that its regulatory region has been cloned intact. No detectable differences were observed in the restriction patterns of the Inaba and Ogawa coding regions implying that only minor changes are involved when serotype conversion (Inaba to Ogawa or vice versa) occurs. Bhaskaran [Ind. J. Med. Res. 47 (1959) 253-260] originally defined this region associated with O-antigen biosynthesis oag; however, to be consistent with other organisms [Hitchcock et al., J. Bacteriol. 166 (1986) 699-705], it is suggested this be changed to rfb.
A 7,022 bp BamHI-EcoRI fragment, located in the inverted repeat of spinach chloroplast, has been sequenced. It contains a 2131 codon open reading frame (ORF) homologous to both tobacco ORFs 581 and 1708, and to Marchantia ORF 2136. Relative to the Marchantia chloroplast genome, spinach ORF 2131 is located at the end of a large inversion; the other end point is close to trnL, the position of which is the same in Marchantia, tobacco and spinach. In Marchantia, two 8 bp direct repeats flanking two 10 bp indirect repeats are present near the end points of the inversion. These repeats may result from a transposon-mediated insertion which would have facilitated the subsequent inversion. From a comparison of the gene organization of the spinach, tobacco, and Marchantia genomes in this region, we propose a step-wise process to explain the expansion of the inverted repeat from a Marchantia-like genome to the spinach/tobacco genome.
A recombinant plasmid carrying the recA gene of Vibrio cholerae was isolated from a V. cholerae genomic library, using complementation in Escherichia coli. The plasmid complements a recA mutation in E. coli for both resistance to the DNA-damaging agent methyl methanesulfonate and recombinational activity in bacteriophage P1 transductions. After determining the approximate location of the recA gene on the cloned DNA fragment, we constructed a defined recA mutation by filling in an XbaI site located within the gene. The 4-base pair insertion resulted in a truncated RecA protein as determined by minicell analysis. The mutation was spontaneously recombined onto the chromosome of a derivative of V. cholerae strain P27459 by screening for methyl methanesulfonate-sensitive variants. Southern blot analysis confirmed the presence of the inactivated XbaI site in the chromosome of DNA isolated from one of these methyl methanesulfonate-sensitive colonies. The recA V. cholerae strain was considerably more sensitive to UV light than its parent, was impaired in homologous recombination, and was deficient in induction of a temperate vibriophage upon exposure to UV light. We conclude that the V. cholerae RecA protein has activities which are analogous to those described for the RecA protein of E. coli.
The gram-negative bacterium Vibrio cholerae is the etiological agent of asiatic cholera in humans. During the past few years, this organism has become more readily amenable to genetic analysis and has been a target of studies involving the use of recombinant DNA technology, primarily because of the interest in vaccine development. Thus, most emphasis has been given to cellular components likely to play a role in the pathogenesis of cholera, namely, those that are associated with the cell surface or that are excreted extracellularly. Vibriophages have been studied as tools for genetic analysis and as interesting biological entities. This article reviews the current status of the genetics of V. cholerae and its bacteriophages.
The lysogenic cholera phage, ‘Kappa’ is some ten to twenty folds more resistant to UV (254 nm) than are most of the T. phages ofE. coli, or the cholera phage PL 163/10, or the hostV. cholerae strain H218 Smr, the 37% (D
37) and 10% (D
10) survival doses being 255.8 J/m2 and 633.6 J/m2 respectively. The UV-irradiated ‘Kappa’ phages could be photoreactivated in the hostV. cholerae strain H218 Smr to a maximum extent of 40%. The removal of the number of lethal hits per phage by the survival-enhancement treatment (photoreactivation) with time followed an exponential relation, the constant probability of removal of lethal hit per unit time being 2.8 × 10−2 min−1. The UV-irradiated phages could also be Weigle reactivated in the host strain H218 Smr by a small degree, the maximum reactivation factor (ratio of survivals in UV-irradiated and non-irradiated hosts) being 1.50.
Vibrio cholerae strains with the transmissible fertility factor P contained a supercoiled circular deoxyribonucleic acid (DNA) component amounting to between 2 and 6% of the total DNA obtained from the cells. Such a component was not observed in V. cholerae strains lacking the fertility factor. This supercoiled circular DNA was isolated from P(+) cells, and the molecular weight was determined by sedimentation velocity experiments and electron microscopy to be approximately 80 million daltons. These supercoiled circular DNA molecules, which have a guanine plus cytosine (G + C) composition of 42%, were concluded to be the extrachromosomal P factor. It was calculated that there is approximately one copy of the P factor per chromosome. A small amount of supercoiled circular DNA was occasionally isolated from the P(-) strains of V. cholerae. The function of this component, which has a molecular weight of 40 million daltons, is not known. The molecules found in the P(-) strains were readily distinguished from the P(+) circular molecules by their smaller molecular weight and different G + C composition.
1.1. Increase in concentration of furazolidone caused progressively increased inhibition of growth of Virbio cholreae cells. Inhibition was complete with 5.0 μg of the drug per ml.2.2. With 0.5 μg of the drug per ml the colony-forming capacity of the vibrios gradually decreased to 25% of the initial value and thereafter remained steady. 5.0 μg of the drug per ml caused a continuous and sharp decrease in the colony-forming capacity of the vibrios.3.3. Furazolidone at 0.5 μg/ml inhibited DNA synthesis significantly, but increased, as compared with the control, RNA and protein synthesis for equal growth. Increase in concentration of the drug caused a progressive decrease in the macromolecular synthesis of the cells.4.4. Withdrawal of the drug after 20 min pretreatment with 0.5 μg of furazolidone per ml resulted in a faster recovery of DNA synthesis only. Complete recovery of the cells after pretreatment with 0.5 or 5.0 μg of the drug per ml and its subsequent withdrawal was not attained within the next 3 h.5.5. V. cholerea hage, Y149 m 15, was not inactivated significantly by 50 μg of the drug per ml but ist intracellular mutliplication was markedly inhibited.6.6. Furazolidone at 0.5 μ/ml produced long filaments of V. cholerea cells. Cells treated with 5.0 μg of the drug per ml retained the normal shape and size but markedly lost their electron opacity.
We have cloned a positive regulatory gene ( toxR ) from Vibrio cholerae that controls cholera toxin transcription. This was done by first constructing a genetic fusion consisting of the lacZ gene fused to the promoter of the cholera toxin operon ctxAB . This operon fusion was used to screen a V. cholerae genomic library for genes that could activate the ctx promoter in Escherichia coli. This method allowed the identification of a gene, toxR , that increases ctx expression by more than 100-fold. Complementation analysis indicated that certain hypotoxinogenic mutants of V. cholerae 569B probably have mutations in the toxR gene. Southern blot analysis suggests that all V. cholerae, including nontoxinogenic strains, have the toxR gene. Moreover, nontoxinogenic strains not only lack the structural genes for cholera toxin but also sequences associated with the larger 7-kilobase ctx genetic element.
Vibrio cholerae strains of the classical biotype all contain two widely separated copies of the cholera toxin operon ctxAB. In contrast, EI Tor strains containing multiple copies of ctx have their copies arranged on large tandem repeats which are either 7 or 9.7 kb in length. The variation in size among these large tandem duplications was due to a difference in the copy number of a smaller, 2.7 kb, tandemly repeated sequence (RS1) that is located at the novel joint of these duplications, as well as upstream and downstream of ctx. Southern blot hybridization analysis indicated that amplification of a DNA region carrying ctx and flanked by direct repeats of RS1 may be responsible for the hypertoxinogenic phenotype of EI Tor variants selected by intraintestinal growth in rabbits.
Lipopolysaccharide (LPS) from Vibrio cholerae O139 Bengal contained colitose (3,6-dideoxy-L-galactose) in addition to glucose, L-glycero-D-manno-heptose, fructose, glucosamine and quinovosamine in its polysaccharide and only glucosamine in lipid A, while perosamine, a characteristic component sugar of V. cholerae O1 LPS, was absent. 3-Hydroxydodecanoic, tetradecanoic and hexadecanoic acids as ester-bound fatty acids and 3-hydroxytetradecanoic acid as amide-bound fatty acid were identified in the lipid A. A very high serological specificity of O139 LPS distinct from that of O1 V. cholerae was demonstrated by passive hemolysis and passive hemolysis inhibition tests by using the LPS either as antigen for sensitizing sheep red blood cells or as inhibitor in the latter test.