ArticlePDF Available

Evidence of genetic enrichment for exceptional survival using a family approach: the Leiden Longevity Study

Authors:

Abstract and Figures

We conducted a sib pair study in very old subjects for the purpose of mapping longevity loci. In the present analysis, we explore whether our recruitment strategy has resulted in a population enriched for a heritable component for exceptional longevity. Our study includes families with at least two long-living siblings (men aged 89 years or above; women aged 91 years or above). Data were collected on date of birth and, if applicable, date of death of parents, brothers and sisters, offspring, and spouses of the long-living participants. Standardised mortality ratios (SMRs) compared with the general Dutch population, were calculated. The SMR for all siblings of the long-living participants was 0.66 (95% CI 0.60-0.73). A similar survival benefit was also observed in the parents (SMR=0.76, 95% CI 0.66-0.87) and in the offspring of the long-living subjects (SMR=0.65, 95% CI 0.51-0.80). The SMR of the spouses of the long-living subjects was 0.95 (95% CI 0.82-1.12). The familial clustering of extended survival is unlikely to be caused by ascertainment bias, because in all analyses the long-living participants were excluded. Moreover, it is also unlikely to be caused by environmental factors, because the spouses of the long-living participants had a mortality risk comparable with the general Dutch population, whereas they share the same environment. We conclude that our sample is genetically enriched for extreme survival.
Content may be subject to copyright.
ARTICLE
Evidence of genetic enrichment for exceptional
survival using a family approach: the Leiden
Longevity Study
Manja Schoenmaker
1
, Anton JM de Craen*
,1
, Paul HEM de Meijer
2
, Marian Beekman
3
,
Gerard J Blauw
1
, P Eline Slagboom
3
and Rudi GJ Westendorp
1
1
Department of Gerontology and Geriatrics, Leiden University Medical Center (LUMC), Leiden, The Netherlands;
2
Department of General Internal Medicine, Leiden University Medical Center (LUMC), Leiden, The Netherlands;
3
Section of Molecular Epidemiology, Leiden University Medical Center (LUMC), Leiden, The Netherlands
We conducted a sib pair study in very old subjects for the purpose of mapping longevity loci. In the
present analysis, we explore whether our recruitment strategy has resulted in a population enriched
for a heritable component for exceptional longevity. Our study includes families with at least two long-
living siblings (men aged 89 years or above; women aged 91 years or above). Data were collected on
date of birth and, if applicable, date of death of parents, brothers and sisters, offspring, and spouses
of the long-living participants. Standardised mortality ratios (SMRs) compared with the general Dutch
population, were calculated. The SMR for all siblings of the long-living participants was 0.66 (95%
CI 0.60 0.73). A similar survival benefit was also observed in the parents (SMR ¼0.76, 95% CI 0.66 0.87)
and in the offspring of the long-living subjects (SMR ¼0.65, 95% CI 0.510.80). The SMR of the spouses
of the long-living subjects was 0.95 (95% CI 0.82 1.12). The familial clustering of extended survival is
unlikely to be caused by ascertainment bias, because in all analyses the long-living participants
were excluded. Moreover, it is also unlikely to be caused by environmental factors, because the spouses
of the long-living participants had a mortality risk comparable with the general Dutch population, whereas
they share the same environment. We conclude that our sample is genetically enriched for extreme
survival.
European Journal of Human Genetics (2006) 14, 79– 84. doi:10.1038/sj.ejhg.5201508; published online 26 October 2005
Keywords: longevity; epidemiology; genetics
Introduction
Each species has its own characteristic lifespan.
1
However,
within a species, individual lifespans vary widely.
This variation is in part the result of an individual ability
to avoid or cope with internal and external damage,
which has a strong genetic basis.
2
For example, single
point mutations in the more than 17 000 genes of
Caenorhabditis elegans can lower the rate of aging and
lengthen lifespan up to nearly five times as long as the
wild-type worms.
3
In mice, a single point mutation in the
p66shc gene delays the rate of aging and extends average
lifespan by about 30%.
4
These experimental data suggest
that the majority of age-related changes are under
coordinated genetic control.
5
By definition, experimental research into aging has been
performed in model organisms. However, several observa-
tional studies in humans have also explored the genetic
component in susceptibility to death. During the last
Received 13 April 2005; revised 6 July 2005; accepted 16 September 2005;
published online 26 October 2005
*Correspondence: Dr AJM de Craen, Department of Gerontology and
Geriatrics, C-2-R Leiden University Medical Centre, PO Box 9600, 2300 RC
Leiden, The Netherlands. Tel: þ31 71 526 6640; Fax: þ31 71 524 8159;
E-mail: craen@lumc.nl
European Journal of Human Genetics (2006) 14, 79 84
&
2006 Nature Publishing Group All rights reserved 1018-4813/06
$30.00
www.nature.com/ejhg
decade, a number of twin studies have shown that
approximately 25% in the variation of human lifespan
is explained by genetic factors.
6,7
The remainder of
the variation has to be explained by private environmental
factors and gene environment interaction. More-
over, recent studies have demonstrated a clustering of
extreme longevity within families.
8,9
Puca et al
10
reported
on the localisation of a longevity locus on chromosome 4
after a genome-wide scan in 308 individuals belonging to
137 long-living sibships. Additionally, Reed et al
11
identi-
fied the same region as Puca on chromosome 4 in 95
healthy male twin pairs with a mean age of 74 years.
Hence, it is likely that genetic factors play an important
role in human longevity, but the exact pathways remain to
be elucidated.
The aim of the Leiden Longevity study is to locate
genetic loci explaining the interindividual differences in
human longevity using an affected sib pair design. There-
fore, we collected a large series of sib pairs aged 90 years
and over. By collecting sib pairs instead of long-living
singletons, we expected an enrichment of genetic factors
contributing to longevity in this population, whereas the
likelihood of having reached a long life because of
exceptional environmental conditions or chance would
be lower. Here we report whether our study of long-living
sib pairs has indeed resulted in a population genetically
enriched for longevity.
Methods
Families can participate in the Leiden Longevity Study
if at least two siblings are long-living. There are four
inclusion criteria for the long-living subjects: (1) men
must be aged 89 years or above and women must be
aged 91 years or above; (2) subjects must have at least one
living brother or one living sister who fulfils the first
criterion and is willing to participate; (3) the sib pairs
have an identical mother and father; (4) the parents
of the sibship are Dutch and Caucasian. The minimum
age of 89 years for men and 91 years for women was
chosen because the age of the participants needed to be
extreme enough to be considered long-lived. In 2001, less
than 0.5% of the Dutch population fulfilled these
sex-specific criteria. We have not increased these age
criteria any further because we then would not be able
to recruit a series of 500 long-living sib pairs from a source
population of about 16 million people. In accordance
with the Declaration of Helsinki, we obtained informed
consent from all participants prior to their entering the
study. Good clinical practice guidelines were maintained.
The study protocol was approved by the ethical committee
of the Leiden University Medical Center before the start of
the study.
In total, 500 sibships were collected to enable a genome-
wide scan for longevity. Long-living cousins are also asked
to participate. In addition, the offspring of the long-living
sib pairs and their partners were enrolled to enable
future association studies. In these studies, the offspring
of long-living subjects, who are assumed to have a
higher susceptibility to become long-lived, will be
the cases, and their partners, who are representatives of
the general population, will be the controls. One of the
advantages of using partners of offspring of long-living
subjects as the control population is that they are likely to
have the same age, socio-economic, and geographical
background.
Data collection
All long-living subjects were visited at home, preferably in
the company of a next-of-kin. During the visit the
pedigrees were completed (see below) and a number of
questionnaires were administered. Cognitive performance
is assessed with the Mini-Mental State Examination
(MMSE).
12
We defined severe cognitive impairment as an
MMSE-score below 19 points. In case of cognitive impair-
ment, informed consent and assessment on competence
and actual performances in activities of daily living (ADL)
were obtained from a guardian. Disabilities in ADL are
measured with the Barthel ADL Index
13
and a modified
Fillenbaum questionnaire.
14
The sum score of the Barthel
Index ranges from 0 (unable to perform any activity) to 20
(competent in all activities). The Fillenbaum questionnaire
has a sum score that ranges from 0 (unable to perform any
activity) to 14 (competent in all activities). The Cantril
ladder,
15
a visual analogue scale on perceived quality of life
varying from 1 to 10 points, is administered to assess well-
being.
Each participating family provides us with the genealo-
gical information regarding the parents (ie P1), all siblings
(ie F1), and the offspring (ie F2) of the long-living
participants. With this genealogical data, three-generation
pedigrees were constructed (see Figure 1). Whenever
possible, this information was verified by passport, or by
birth or marriage certificate. Moreover, all data were also
verified with the personal record cards of the deceased
family members in the national population registry located
at the Central Bureau of Genealogy in The Hague, The
Netherlands.
From the long-living subjects, their offspring, the
partners of their offspring, and the long-living cousins, a
venous blood sample was drawn for isolation of DNA, RNA,
serum, and plasma. In case a participant prefered a mouth
swab instead of a blood sample, a mouth swab was
collected for DNA-extraction only. Moreover, place of birth
of the parents of the partners of the offspring was recorded,
to facilitate classification of partners as being ‘Caucasian’.
Statistical methods
The statistical analysis proceeded in various stages.
First, the mortality of various generations was compared
Genetic enrichment for exceptional survival
M Schoenmaker et al
80
European Journal of Human Genetics
with the general population using standardised mortality
ratios (SMRs). The SMR is the ratio of the observed
number of deaths in the study relative to the expected
number of deaths in the general population, adjusted
for sex and calendar period. A description of the
method has been described by others.
16,17
Second, the
mortality between different groups was directly compared
using Cox regression analysis. Level of significance was set
at 0.05.
Results
Recruitment to the Leiden Longevity Study started in July
2002. The number and age distribution of all family
members of the first 100 families included in the study
are listed in Table 1. The characteristics described are
derived from generations P1, F1, and F2. The proportion of
deceased subjects increases with an earlier year of birth
(P1-F1-F2). The proportion of deceased males in gen-
erations F1 and F2 is higher than the proportion of
deceased females. There were two living male spouses of
long-living females, while there were 21 living female
spouses of long-living males.
son1
(F2)
daughter 2
(F2)
partner son
(F2)
partner daughter 2
(F2)
spouse subject 2
(F2)
spouse subject 1
(F1)
daughter3
(F2)
partner daughter 3
(F2)
sibling
(F1)
sibling
(F1)
subject 2
(F1)
subjects 1
(F1)
mother
(P1)
father
(P1)
Figure 1 Representative pedigree. The closed symbols represent the long-lived individuals; the arrows point at the ascertained long-living subjects.
P1, F1 and F2 represent the three generations included in the study.
Table 1 Characteristics of the first 100 families
Males Females
n Age n Age
Parents of long-living subjects (P1)
Deceased 100 78 (68 87) 98
a
80 (67 88)
Total sibships
b
(F1)
Alive 106 90 (84 93) 228 92 (89 95)
Deceased 238 75 (47 84) 152 84 (61 90)
Spouses of long-living subjects
c
(F1)
Alive 2 88 (86 89) 21 86 (83 89)
Deceased 119 76 (68 84) 36 81 (78 86)
Offspring of long-living subjects (F2)
Alive 351 59 (54 64) 371 59 (55 65)
Deceased 51 50 (26 59) 31 33 (6 56)
Partners of offspring of long-living subjects
d
(F2)
Alive 93 62 (57 66) 101 57 (52 61)
Age displayed as median (interquartile range). P1, F1 and F2 represent
the three generations included in the study (see also Figure 1).
a
Two mothers had unknown dates of birth.
b
Total sibship includes the long-lived subjects and all the siblings.
c
Calculations include only the first spouse.
d
Calculations include only the partners who participated in the study.
Genetic enrichment for exceptional survival
M Schoenmaker et al
81
European Journal of Human Genetics
The median MMSE score of the long-living
subjects, indicating global cognitive functioning, was 25
(interquartile range (IQR) 21 27). Severe cognitive impair-
ment (MMSE o19) was found in 14% of the long-living
subjects. The median Barthel and Fillenbaum scores,
measuring disability, were 18 (IQR 15– 20) and 8 (IQR
4 11). Of the long-living subjects, 26% had a Barthel score
of 20, indicating they are competent to perform all ADL
independently. The proportion of participants who were
able to perform all seven items of the Fillenbaum
independently was 5%. The median score on the Cantril
ladder, a test to measure well-being, was 8 points out of 10
(IQR 7 8).
Table 2 lists the mortality characteristics of the
various generations in the included families, expressed
as SMR. An SMR below unity indicates that the mortality
in the included sample is lower than in the general
population, adjusted for sex, age distribution, and calendar
time. The SMR for all 221 long-living participants and
their 503 siblings was 0.31 (95% CI 0.28 0.34). When
we excluded the 221 long-living participants, the SMR
was 0.66 (95% CI 0.60 0.73) for the 503 remaining
brothers and sisters. The survival benefit is also present
in the parents (SMR ¼0.76, 95% CI 0.66 0.87) and
in the offspring of the long-living participants (SMR ¼0.65,
95% CI 0.51 0.80). Moreover, the spouses of the
long-living participants, who have a similar socio-
economic background as the long-living participants
themselves, have a mortality pattern similar to
that of the general population (SMR 0.95, 95% CI
0.82 1.12).
In a direct comparison, the relative mortality risk
of the brothers and sisters of the long-living participants
versus the spouses of the long-living participants was
0.65 (sex-adjusted hazard ratio 0.65, 95% CI 0.540.80).
The relative mortality risk between the siblings and
the spouses was 0.66 (95% CI 0.52 0.83) for the men
and 0.65 (95% CI 0.44 0.94) for the women.
Discussion
Using the first 100 families of the Leiden Longevity Study,
we found a consistent survival benefit in the parents, the
siblings, and the offspring of the long-living sib pairs. This
clearly indicates that we have succeeded in generating a
study sample that is enriched for longevity. As the benefit
was present in all family members of the long-living sib
pairs but not in their partners, we think it is likely that the
survival benefit is not attributable to ascertainment bias or
to environmental factors but is caused by heritable factors.
We have two arguments to infer that the survival benefit
is caused by heritable factors. First, there is a clear survival
advantage in all three generations of the included families.
The parents (P1), siblings (F1), and offspring (F2) of the
included long-living subjects all have a comparable
survival benefit. The fact that family members beyond
the participating long-living sib pairs have a lower
mortality risk makes ascertainment bias unlikely. Second,
in line with expectation, a direct comparison of the
survival of the siblings of the long-living participants with
the spouses of the long-living participants showed a
survival benefit of 0.65. We think that the adult environ-
mental conditions of the siblings of the long-living
participants are likely to be similar to the adult environ-
mental conditions of the spouses of the long-living
participants. Moreover, although it is possible that
the early life conditions of the two groups are different,
we consider it unlikely that familial nongenetic preadult
environmental factors explain the observed survival
benefit of 0.65.
In comparison with the general Dutch population, we
found a small, nonsignificant survival benefit of the
Table 2 Mortality of the parents, siblings, offspring and partners of the included sib pairs compared with the general Dutch
population
Standardised mortality ratio (95% CI)
n
Observed
deaths
Expected
deaths All Males Females
Parents of long-living subjects
a
(P1) 198
b
198 261 0.76 (0.66 0.87) 0.81 (0.67 0.99) 0.70 (0.57 0.85)
Total sibship (F1)
Including all participating long-living subjects 724 390 1194 0.31 (0.28 0.34) 0.43 (0.38 0.49) 0.24 (0.20 0.28)
Excluding all participating long-living subjects 503 390 591 0.66 (0.60 0.73) 0.71 (0.63 0.81) 0.59 (0.50 0.69)
Offspring of long-living subjects (F2) 804 82 117 0.65 (0.51 0.80) 0.68 (0.51 0.89) 0.59 (0.42 0.84)
Partners of long-living subjects
c
(F1) 178 155 161 0.95 (0.82 1.12) 1.00 (0.84 1.20) 0.82 (0.59 1.14)
P1, F1 and F2 represent the three generations included in the study (see also Figure 1).
a
Person years were counted from the date of birth of the youngest long-living subject.
b
Two parents had unknown dates of birth.
c
Includes only the first spouse of long-living subjects; person years were counted from the date of marriage.
Genetic enrichment for exceptional survival
M Schoenmaker et al
82
European Journal of Human Genetics
partners of the long-living subjects. As high socio-econom-
ic background is associated with higher life expectancy,
18
our sample might have a small overrepresentation
of families with higher socio-economic background.
Hence, we think that the small, nonsignificant
survival benefit of the partners of the long-living subjects
is likely to be caused by environmental factors. More-
over, we could not calculate an SMR of the partners
of the offspring of the long-living participants because
we only included living partners. Therefore, any compar-
ison with the general population would have revealed a
survival benefit, which is clearly caused by this selective
inclusion.
The cognitive function of the long-living subjects is
comparable with other studies of octo- and nonagenar-
ians.
19
According to expectation, the number of subjects
who could independently do all ADL was higher than the
number of subjects who could perform all IADL indepen-
dently.
20
A median score of 8.0 for well-being is in the same
range as the elderly of 85 years and older.
21
The scores on
these tests indicate that our study sample is a good
representation of the general population of the oldest of
the Dutch elderly. Moreover, as the aim of our study is to
locate genetic loci explaining the interindividual differ-
ences in human longevity, we decided not to collect any
environmental risk factors associated with age-related
diseases or longevity. For, so far as an unintended selection
of a beneficial environment can explain for the survival
benefit, we emphasise that mortality in the offspring was
35% lower than expected whereas it was not different from
the general population in the spouses. These data strongly
suggest that the survival benefit is due to familial, genetic
factors.
Perls et al
22
demonstrated that siblings of centenarians
have a four-fold increased probability of surviving to the
age of 91 years (l
s
¼4). Kerber et al
23
calculated that
siblings of subjects achieving the 97th percentile of excess
longevity (for males this corresponded with an age of 95
years and for women an age of 97 years) had a l
s
of 2.30 to
achieve the 97th percentile. Normally, l
s
is the probability
for a long-living individual (not a sib pair) to have a long-
living sibling divided by the probability of this in the
general population. However, our study design does not
permit this calculation as we included sib pairs in our
study.
An important strength of our study is that the majority
of analyses were carried out in subjects after exclusion of
the long-living sib pairs. The parents, brothers and sisters,
and offspring of the long-living participants all had an
extended survival of about 0.70. The analysis where the sib
pairs were included showed a survival benefit of 0.31.
However, this is an overestimation of the survival benefit
because of ascertainment bias since it also includes the
long-living subjects. Hence, the true genetic enrichment of
the included long-living sib pairs is probably between these
two values. Another important strength is that all data
were verified by official documents and population-based
registries.
In conclusion, we observed familial clustering of ex-
tended survival in three generations in families included in
the Leiden Longevity Study. In this study design of
nonagenarian subjects, we distinguished shared environ-
mental influences and a significant genetic component
contributing to extended survival. Mapping of longevity
genes in this study allows for future linkage analysis. The
two generation inclusion further enables a combination of
linkage and association analysis.
References
1 Finch CE: Longevity, Senescence, and the Genome. Chicago: The
University of Chicago Press, 1990.
2 Zwaan BJ: The evolutionary genetics of ageing and longevity.
Heredity 1999; 82: 589 597.
3 Lakowski B, Hekimi S: Determination of life-span in Caenorhab-
ditis elegans by four clock genes. Science 1996; 272: 1010 1013.
4 Migliaccio E, Giorgio M, Mele S et al: The p66shc adaptor protein
controls oxidative stress response and life span in mammals.
Nature 1999; 402: 309 313.
5 Miller RA, Chrisp C, Jackson AU, Galecki AT, Burke DT:
Coordinated genetic control of neoplastic and nonneo-
plastic diseases in mice. J Gerontol A Biol Sci Med Sci 2002; 57:
B3 B8.
6 Herskind AM, McGue M, Holm NV, Sorensen TI, Harvald B,
Vaupel JW: The heritability of human longevity: a population-
based study of 2872 Danish twin pairs born 1870 1900. Hum
Genet 1996; 97: 319 323.
7 Iachine IA, Holm NV, Harris JR et al: How heritable is individual
susceptibility to death? The results of an analysis of survival
data on Danish, Swedish and Finnish twins. Twin Res 1998; 1:
196 205.
8 Perls TT, Wilmoth J, Levenson R et al: Life-long sustained
mortality advantage of siblings of centenarians. Proc Natl Acad
Sci USA 2002; 99: 8442 8447.
9 Skytthe A, Pedersen NL, Kaprio J et al: Longevity studies in
GenomEUtwin. Twin Res 2003; 6: 448 454.
10 Puca AA, Daly MJ, Brewster SJ et al: A genome-wide scan
for linkage to human exceptional longevity identifies a locus
on chromosome 4. Proc Natl Acad Sci USA 2001; 98:
10505 10508.
11 Reed T, Dick DM, Uniacke SK, Foroud T, Nichols WC: Genome-
wide scan for a healthy aging phenotype provides support for a
locus near D4S1564 promoting healthy aging. J Gerontol A Biol Sci
Med Sci 2004; 59: 227 232.
12 Folstein MF, Folstein SE, McHugh PR: ‘Mini Mental State’: a
practical method for grading the cognitive state of patients for
the clinician. J Psychiatr Res 1975; 12: 189 198.
13 Mahoney FI, Barthel DW: Functional evaluation: the Barthel
index. Md State Med J 1965; 14:6165.
14 Fillenbaum GG: Screening the elderly. A brief instrumental
activities of daily living measure. J Am Geriatr Soc 1985; 33:
698 706.
15 Cantril H: The Pattern of Human Concern. New Brunswick, NJ:
Rutgers University Press, 1965.
16 Hille ET, Westendorp RGJ, Vandenbroucke JP, Rosendaal FR:
Mortality and causes of death in families with the factor V Leiden
mutation (resistance to activated protein C). Blood 1997; 89:
1963 1967.
17 Rosendaal FR, Heijboer H, Brie
¨tEet al: Mortality in hereditary
antithrombin III deficiency 1830 1989. Lancet 1991; 337:
260 262.
Genetic enrichment for exceptional survival
M Schoenmaker et al
83
European Journal of Human Genetics
18 Vagero D, Leon D: Effect of social class in childhood and
adulthood on adult mortality. Lancet 1994; 343: 1224 1225.
19 Heeren TJ, Lagaay AM, von Beek WC, Rooymans HG, Hijmans W:
Reference values for the Mini-Mental State Examination (MMSE)
in octo- and nonagenarians. J Am Geriatr Soc 1990; 38: 1093– 1096.
20 Bootsma-van der Wiel A, Gussekloo J, de Craen AJ et al: Disability
in the oldest old: ‘can do’ or ‘do do’? J Am Geriatr Soc 2001; 49:
909 914.
21 von Faber M, Bootsma-van der Wiel A, van Exel E et al: Successful
aging in the oldest old: who can be characterized as successfully
aged? Arch Intern Med 2001; 161: 2694 2700.
22 Perls TT, Bubrick E, Wager CG, Vijg J, Kruglyak L: Siblings of
centenarians live longer. Lancet 1998; 351: 1560.
23 Kerber RA, O’Brien E, Smith KR, Cawthon RM: Familial excess
longevity in Utah genealogies. J Gerontol A Biol Sci Med Sci 2001;
56: B130 B139.
Genetic enrichment for exceptional survival
M Schoenmaker et al
84
European Journal of Human Genetics
... The Leiden Longevity Study (LLS) [37] Family eligibility required at least two long-lived living siblings who met a stringent, sex-specific age criterion (aged at least 89 years for males and 91 years for females). At the time of the study's initiation, less than 0.5% of the Dutch population fulfilled this requirement as an individual, and sibships with multiple eligible members were estimated to represent less than 0.1% [38]. ...
... In the LLS population, offspring and other first-degree relatives are enriched for familial influences on longevity [37]. Their partners serve as controls, having comparable age, socio-economic status, location, lifestyle and environmental factors but without this genetic advantage. ...
Article
Full-text available
Background Dietary intake of n-3 polyunsaturated fatty acids (PUFA) may have a protective effect on the development of cardiovascular diseases, diabetes, depression and cancer, while a high intake of n-6 PUFA was often reported to be associated with inflammation-related traits. The effect of PUFAs on health outcomes might be mediated by DNA methylation (DNAm). The aim of our study is to identify the impact of PUFA intake on DNAm in the Cooperative Health Research in the Region of Augsburg (KORA) FF4 cohort and the Leiden Longevity Study (LLS). Results DNA methylation levels were measured in whole blood from the population-based KORA FF4 study (N = 1354) and LLS (N = 448), using the Illumina MethylationEPIC BeadChip and Illumina HumanMethylation450 array, respectively. We assessed associations between DNAm and intake of eight and four PUFAs in KORA and LLS, respectively. Where possible, results were meta-analyzed. Below the Bonferroni correction threshold (p < 7.17 × 10–8), we identified two differentially methylated positions (DMPs) associated with PUFA intake in the KORA study. The DMP cg19937480, annotated to gene PRDX1, was positively associated with docosahexaenoic acid (DHA) in model 1 (beta: 2.00 × 10–5, 95%CI: 1.28 × 10–5-2.73 × 10–5, P value: 6.98 × 10–8), while cg05041783, annotated to gene MARK2, was positively associated with docosapentaenoic acid (DPA) in our fully adjusted model (beta: 9.80 × 10–5, 95%CI: 6.25 × 10–5-1.33 × 10–4, P value: 6.75 × 10–8). In the meta-analysis, we identified the CpG site (cg15951061), annotated to gene CDCA7L below Bonferroni correction (1.23 × 10–7) associated with eicosapentaenoic acid (EPA) intake in model 1 (beta: 2.00 × 10–5, 95% CI: 1.27 × 10–5–2.73 × 10–5, P value = 5.99 × 10–8) and we confirmed the association of cg19937480 with DHA in both models 1 and 2 (beta: 2.07 × 10–5, 95% CI: 1.31 × 10–5–2.83 × 10–5, P value = 1.00 × 10–7 and beta: 2.19 × 10–5, 95% CI: 1.41 × 10–5–2.97 × 10–5, P value = 5.91 × 10–8 respectively). Conclusions Our study identified three CpG sites associated with PUFA intake. The mechanisms of these sites remain largely unexplored, highlighting the novelty of our findings. Further research is essential to understand the links between CpG site methylation and PUFA outcomes.
... This study was embedded in the Rotterdam Study (RS), with a partial validation for neuroimaging associations in the Leiden Longevity Study (LLS). A brief description of both cohorts can be found in Methods S1 [14,15]. Both studies comply with Declaration of Helsinki and are approved by the Medical Ethical Committee of the respective institutional review boards (registration number MEC 02.1015 and P01.113). ...
Article
Full-text available
Background The gut-derived metabolite Trimethylamine N-oxide (TMAO) and its precursors - betaine, carnitine, choline, and deoxycarnitine – have been associated with an increased risk of cardiovascular disease, but their relation to cognition, neuroimaging markers, and dementia remains uncertain. Methods In the population-based Rotterdam Study, we used multivariable regression models to study the associations between plasma TMAO, its precursors, and cognition in 3,143 participants. Subsequently, we examined their link to structural brain MRI markers in 2,047 participants, with a partial validation in the Leiden Longevity Study (n = 318). Among 2,517 participants, we assessed the risk of incident dementia using multivariable Cox proportional hazard models. Following this, we stratified the longitudinal associations by medication use and sex, after which we conducted a sensitivity analysis for individuals with impaired renal function. Results Overall, plasma TMAO was not associated with cognition, neuroimaging markers or incident dementia. Instead, higher plasma choline was significantly associated with poor cognition (adjusted mean difference: -0.170 [95% confidence interval (CI) -0.297;-0.043]), brain atrophy and more markers of cerebral small vessel disease, such as white matter hyperintensity volume (0.237 [95% CI: 0.076;0.397]). By contrast, higher carnitine concurred with lower white matter hyperintensity volume (-0.177 [95% CI: -0.343;-0.010]). Only among individuals with impaired renal function, TMAO appeared to increase risk of dementia (hazard ratio (HR): 1.73 [95% CI: 1.16;2.60]). No notable differences were observed in stratified analyses. Conclusions Plasma choline, as opposed to TMAO, was found to be associated with cognitive decline, brain atrophy, and markers of cerebral small vessel disease. These findings illustrate the complexity of relationships between TMAO and its precursors, and emphasize the need for concurrent study to elucidate gut-brain mechanisms.
... Aging Study Amsterdam (LASA) (34), Leiden Longevity Study (LLS) (35), Rotterdam Study (36), and the SMART-MR Study (37,38). The ADC came from a memory clinic, but only participants with subjective cognitive decline were included in the current study. ...
... Further evidence of the association between inherited longevity genes and increased age has been observed in extensive studies involving over 20,000 Scandinavian twins [17], Icelanders [18], and other centenarian populations [19,20]. Additionally, comprehensive studies like the New England Centenarian Study [21], the Leiden Longevity Study [22], and the Long Life Family Study [23] have compared the offspring of long-lived individuals to contemporaneous controls. These offspring not only exhibited longer average lifespans but also displayed various healthy aging characteristics, including beneficial lipid profiles [24], a low rate of cardiovascular and metabolic diseases [25], and a lower prevalence of hypertension compared to their age-matched controls [24,26]. ...
Article
Full-text available
Aging is inevitable, but the lifespan (duration of life) and healthspan (healthy aging) vary greatly among individuals and across species. Unlocking the secrets behind these differences has captivated scientific curiosity for ages. This review presents relevant recent advances in genetics and cell biology that are shedding new light by untangling how subtle changes in conserved genes, pathways, and epigenetic factors influence organismal senescence and associated declines. Biogerontology is a complex and rapidly growing field aimed at elucidating genetic modifications that extend lifespan and healthspan. This review explores gerontogenes, genes influencing lifespan and healthspan across species. Though subtle differences exist, long-lived individuals such as centenarians demonstrate extended healthspans, and numerous studies confirm the heritability of longevity/healthspan genes. Importantly, genes and gerontogenes are directly and indirectly involved in DNA repair, insulin/IGF-1 and mTOR signaling pathways, long non-coding RNAs, sirtuins, and heat shock proteins. The complex interactions between genetics and epigenetics are teased apart. While more research into optimizing healthspan is needed, conserved gerontogenes offer synergistic potential to forestall aging and age-related diseases. Understanding complex longevity genetics brings closer the goal of extending not only lifespan but quality years of life. The primary aim of human Biogerontology is to enhance lifespan and healthspan, but the question remains: are current genetic modifications effectively promoting healthy aging? This article collates the advancements in gerontogenes that enhance lifespan and improve healthspan alongside their potential challenges.
... Samples were contributed by the UMCG "LifeLines" collection [2] (http:// lifel ines. nl), the LUMC Longevity Study [46] (http:// www. leide nlang leven. ...
Article
Full-text available
Expression quantitative trait loci (eQTL) offer insights into the regulatory mechanisms of trait-associated variants, but their effects often rely on contexts that are unknown or unmeasured. We introduce PICALO, a method for hidden variable inference of eQTL contexts. PICALO identifies and disentangles technical from biological context in heterogeneous blood and brain bulk eQTL datasets. These contexts are biologically informative and reproducible, outperforming cell counts or expression-based principal components. Furthermore, we show that RNA quality and cell type proportions interact with thousands of eQTLs. Knowledge of hidden eQTL contexts may aid in the inference of functional mechanisms underlying disease variants.
... One cohort (i.e., EPAD+) included two subcohorts (i.e., EMIF-Twins and EMIF-90+). Therefore, a total of eight cohorts were included in the meta-analysis: the Amsterdam Dementia Cohort (ADC), 30 Doetinchem Cohort Study (DCS), 31 EMIF-Twins, 32 EMIF-90+, 33 Longitudinal Aging Study Amsterdam (LASA), 34 Leiden Longevity Study (LLS), 35 Rotterdam Study, 36 and the SMART-MR Study. 37,38 The ADC came from a memory clinic, but only participants with subjective cognitive decline were included in the current study. ...
Conference Paper
Full-text available
Background Depression has been associated with an increased risk of Alzheimer’s disease (AD), but the biological mechanisms are still not fully understood. Plasma biomarkers, such as amyloid‐beta, tau, glial fibrillary acidic protein (GFAP), and neurofilament light (NfL), have been associated with AD pathophysiology. However, the relationship with depression is unclear. Assessing these biomarkers in the blood allows for the opportunity to assess if AD pathology is related to depressive symptoms on a large‐scale. We hypothesized if depression is part of the AD process, then these markers will be associated with depressive symptoms. Method A two‐stage IPD meta‐analysis was performed based on eight cohorts of individuals without dementia as part of the Netherlands Consortium of Dementia Cohorts (NCDC). We examined the cross‐sectional association between each plasma marker for AD (amyloid‐beta42/40 ratio, p‐tau181, NfL, and GFAP) with depressive symptoms (the GDS‐15, PHQ‐9, CES‐D, and SF‐36). Plasma markers were assessed using Single Molecular Array (Simoa; Quanterix) assays. Both plasma markers and depressive symptoms were standardized. We estimated the effect per plasma marker with depressive symptoms using linear regressions, correcting for age, sex, education, and APOE e4 allele presence, in each cohort. The effect estimates were entered into a random‐effects meta‐analysis. We also performed subgroup analyses assessing sex differences and between those with and without an APOE e4 allele. Result This study involved 7210 participants with an age range of 38 to 102 years. Based on clinical cut‐offs per questionnaire, high depressive symptomology ranged from one to 22% per cohort. None of the plasma markers were associated with depressive symptoms in the meta‐analysis. However, subgroup analyses found an association with NfL and depressive symptoms in women (beta 0.07; 95% CI: 0.03‐0.10, p < 0.001) and in those with an APOE e4 allele (beta 0.11; 95% CI: 0.05‐0.17, p = 0.001). Conclusion AD pathology did not show an overall relationship with depressive symptoms. However, in women and in those with a genetic risk for AD, NfL showed an association. As NfL is a marker of overall neurodegeneration, this pathology in plasma may be specific to depressive symptoms in certain subgroups.
Article
Relationships of growth, metabolism, reproduction, and body size to the biological process of aging and longevity have been studied for decades and various unifying “theories of aging” have been proposed to account for the observed associations. In general, fast development, early sexual maturation leading to early reproductive effort, as well as production of many offspring, have been linked to shorter lifespans. The relationship of adult body size to longevity includes a remarkable contrast between the positive correlation in comparisons between different species and the negative correlation seen in comparisons of individuals within the same species. We now propose that longevity and presumably also the rate of aging are related to the “pace-of-life.” A slow pace-of-life including slow growth, late sexual maturation, and a small number of offspring, predicts slow aging and long life. The fast pace of life (rapid growth, early sexual maturation, and major reproductive effort) is associated with faster aging and shorter life, presumably due to underlying trade-offs. The proposed relationships between the pace-of-life and longevity apply to both inter- and intra-species comparisons as well as to dietary, genetic, and pharmacological interventions that extend life and to evidence for early life programming of the trajectory of aging. Although available evidence suggests the causality of at least some of these associations, much further work will be needed to verify this interpretation and to identify mechanisms that are responsible.
Article
Glycans are an essential structural component of immunoglobulin G (IgG) that modulate its structure and function. However, regulatory mechanisms behind this complex posttranslational modification are not well known. Previous genome-wide association studies (GWAS) identified 29 genomic regions involved in regulation of IgG glycosylation, but only a few were functionally validated. One of the key functional features of IgG glycosylation is the addition of galactose (galactosylation), a trait which was shown to be associated with ageing. We performed GWAS of IgG galactosylation (N=13,705) and identified 16 significantly associated loci, indicating that IgG galactosylation is regulated by a complex network of genes that extends beyond the galactosyltransferase enzyme that adds galactose to IgG glycans. Gene prioritization identified 37 candidate genes. Using a recently developed CRISPR/dCas9 system we manipulated gene expression of candidate genes in the in vitro IgG expression system. Upregulation of three genes, EEF1A1, MANBA and TNFRSF13B, changed the IgG glycome composition, which confirmed that these three genes are involved in IgG galactosylation in this in vitro expression system.
Article
Full-text available
Molecular epidemiological studies confirm a substantial contribution of individualgenes to variability in susceptibility to disease and death for humans. To evaluatethe contribution of all genes to susceptibility and to estimate individual survivalcharacteristics, survival data on related individuals (eg twins or other relatives)are needed. Correlated gamma-frailty models of bivariate survival are used ina joint analysis of survival data on more than 31 000 pairs of Danish, Swedish andFinnish male and female twins using the maximum likelihood method. Additivedecomposition of frailty into genetic and environmental components is used toestimate heritability in frailty. The estimate of the standard deviation of frailtyfrom the pooled data is about 1.5. The hypothesis that variance in frailty andcorrelations of frailty for twins are similar in the data from all three countriesis accepted. The estimate of narrow-sense heritability in frailty is about0.5. The age trajectories of individual hazards are evaluated for all threepopulations of twins and both sexes. The results of our analysis confirm thepresence of genetic influences on individual frailty and longevity. They alsosuggest that the mechanism of these genetic influences may be similar for the threeScandinavian countries. Furthermore, results indicate that the increase in individualhazard with age is more rapid than predicted by traditional demographic life tables.
Article
Full-text available
Gene mutations in invertebrates have been identified that extend life span and enhance resistance to environmental stresses such as ultraviolet light or reactive oxygen species. In mammals, the mechanisms that regulate stress response are poorly understood and no genes are known to increase individual life span. Here we report that targeted mutation of the mouse p66shc gene induces stress resistance and prolongs life span. p66shc is a splice variant of p52shc/p46shc (ref. 2), a cytoplasmic signal transducer involved in the transmission of mitogenic signals from activated receptors to Ras. We show that: (1) p66shc is serine phosphorylated upon treatment with hydrogen peroxide (H2O2) or irradiation with ultraviolet light; (2) ablation of p66shc enhances cellular resistance to apoptosis induced by H2O2 or ultraviolet light; (3) a serine-phosphorylation defective mutant of p66shc cannot restore the normal stress response in p66shc-/- cells; (4) the p53 and p21 stress response is impaired in p66shc-/- cells; (5) p66shc-/- mice have increased resistance to paraquat and a 30% increase in life span. We propose that p66shc is part of a signal transduction pathway that regulates stress apoptotic responses and life span in mammals.
Article
To determine whether antithrombin-III (AT-III) deficiency leads to an excess mortality, we studied 171 individuals from ten families with a proven hereditary deficiency. 73 were classified as certainly deficient either by direct measurement of AT-III concentration or by mendelian inheritance patterns. 98 individuals had a high probability (0.5) of deficiency. The 64 deaths recorded did not exceed those expected for the general population adjusted for age, sex, and calendar period. We suggest that a policy of prophylactic anticoagulation for patients with AT-III deficiency cannot be recommended.
Article
The Mini-Mental State Examination (MMSE) was used in a population survey of all inhabitants of Leiden, the Netherlands, over 85 years (n = 1258). In this paper we report on 532 subjects without neurological or psychiatric disease. Results show that the median score and lowest quartile cut-off score remain high until the tenth decade (median score = 28, lowest quartile cut-off score = 26). Thus age, in itself, is not a major limitation in using the MMSE. In this study a comparatively low level of education (the majority had 6 to 7 years of education) did not affect the results on the MMSE in a negative way, nor did we find an association with the use of psychoactive drugs.
Article
Although multidimensional functional assessment may be the route of choice in determining the personal status of the elderly and the services they need, the majority of the elderly are well and competent, making it hard to justify routine extensive assessment with its attendant costs. Described herein is a brief, valid, and reliable five-item screener based on instrumental activities of daily living which can rapidly identify elderly community residents with impaired functional capacity, and which, because of its substantial correlation with physical health (r = .54 to .55), mental health (r = .54 to .60), and predictability of death can identify those for whom more extensive assessment is warranted. Use of such a brief screener should result in better targeting of elderly in need of service, facilitate coordinated and efficient health care delivery, and maintain the functional independence of the elderly.
Article
The nematode worm Caenorhabditis elegans is a model system for the study of the genetic basis of aging. Maternal-effect mutations in four genes--clk-1, clk-2, clk-3, and gro-1--interact genetically to determine both the duration of development and life-span. Analysis of the phenotypes of these mutants suggests the existence of a general physiological clock in the worm. Mutations in certain genes involved in dauer formation (an alternative larval stage induced by adverse conditions in which development is arrested) can also extend life-span, but the life extension of Clock mutants appears to be independent of these genes. The daf-2(e1370) clk-1(e2519) worms, which carry life-span-extending mutations from two different pathways, live nearly five times as long as wild-type worms.