Content uploaded by Paulo Fontoura
Author content
All content in this area was uploaded by Paulo Fontoura on May 12, 2017
Content may be subject to copyright.
HUMAN GENE MUTATIONS
Novel human pathological mutations
Published online: 13 April 2007
ÓSpringer-Verlag 2007
Correction to Hm0516b published in Hum Genet (2005) Vol. 118, page 536
Gene Symbol: SCN5A
Disease: Brugada syndrome
E. Arbustini, M.F. Scaffino, M. Diegoli, N. Marziliano, M. Grasso, M. Pasotti, P. Baraldi, R.G. Zennaro
It should read N. Marziliano instead of N. Maziliano
Gene Symbol: ALMS1
Disease: Alstrom syndrome
K.J. Flintoff
DNA Laboratory, Clinical Genetics Department, St. James’s University Hospital, Beckett Street, Leeds, LS9 7TF, UK,
E-mail: kim.flintoff@leedsth.nhs.uk, Tel.: +44-113-2066058, Fax: +44-113-2065677
Odile Boute-Benejean
Service de Genetique Clinique, Hopital Jeanne Flandre, 59037 Lille Cedex, France
Small Deletions (<21 bp)
Accession number:Codon number/location: Deletion:
Hd0701 2098 ATTTT^CAcaGAGAG
Comments: c.6294_6295delCA
Gene Symbol: APOB
Disease: Normotriglyceridemic hypobetalipoproteinemia
Vivienne Homer, Peter M. George, Stephen du Toit, James S. Davidson, Callum J. Wilson
Canterbury Health Laboratories, Department of Biochemistry, Hagley Ave & Tuam Cnr, 8001 Christchurch, New Zealand,
E-mail: vivienne.homer@cdhb.govt.nz, Tel.: +64-3-3640552, Fax: +64-3-3640545
Small Deletions (<21 bp)
123
Hum Genet (2007) 121:645–652
DOI 10.1007/s00439-007-0355-x
Accession number:Codon number/location: Deletion:
Hd0702 3023 GCATCC^acaaACAATGAA
Comments: Reference:
Mental retardation and ataxia due to normotriglyceridemic hypobetalipoproteinemia.
Ann Neurol. 2005 Jul;58(1):160–163.
PMID: 15984016 [PubMed—indexed for MEDLINE]
Gene Symbol: G6PD
Disease: Glucose-6-phosphate dehydrogenase deficiency
L. Manco, M.L. Ribeiro
Departamento de Antropologia, Universidade de Coimbra, 3000 Coimbra, Portugal, E-mail: lmanco@antrop.uc.pt,
Tel.: +351-239-829051, Fax: +351-239-823491
Small Deletions (<21 bp)
Accession number:Codon number/location: Deletion:
Hd0703 359 TGC^GgcaaggccctgaacgagcGCAAG
Comments: The short deletion of 18 nucleotides corresponds to [del c.1076–1094] within exon 10 resulting in the 6 amino
acids deletion [del p. 359–364] near the dimer interface of the G6PD enzyme. The new mutation was named G6PD
Tondela after the patient place of birth.
Gene Symbol: FECH
Disease: Porphyria, erythropoietic
V. Brancaleoni, E. Di Pierro, V. Besana, S. Ausenda, S. Drury, M.D. Cappellini
Department of Internal Medicine, University of Milan, Centro Anemie Congenite, Ospedale Maggiore Policlinico,
Mangiagalli e Regina Elena, Fondazione IRCCS, Via F.Sforza, 35 20122 Milano, Italy, E-mail: laboratorioCAC@poli-
clinico.mi.it, Tel.: +39-55033363, Fax: +39-02-50320296
Gross Deletions
Accession number:
Hg0701
Deletion: The first breakpoint was located in the intron 1 of the FECH gene at nucleotide 53402361, the second was
located in the intragenic space at nucleotide 53412738.
The 53402361-53412738del10377 bp causes the loss of the promoter and of the exon 1 of the FECH gene.
Description: DNA analysis revealed the presence of a 10,377 bp
Comments: GeneBank Accesion Number NC_000018, CON 30-AUG-2006
Version: NC_000018.8 GI:51511735
Gene Symbol: TAP2
Disease: HLA class I deficiency
Henri de la Salle, Dominique Fricker, Daniel Hanau, Figen Dogu, Aydan Ikinciogullari
EFS-Alsace, INSERM U725, Rue Spielmann 10, 67065 Strasbourg, France, E-mail: henri.delasalle@efs-alsace.fr,
Tel.: +33-388-212525, Fax: +33-388-2125244
646 Hum Genet (2007) 121:645–652
123
Small Insertions (<21 bp)
Accession number:Codon number/location: Insertion:
Hi0701 341 GCTGCAG^ACCcGTTCGCAGTTT
Comments: Associated to HLA haplotype: A*26 B*08 C*w7 DRB1*15 DQB1*05
Gene Symbol: RS1
Disease: X-linked juvenile retinoschisis
Rosa Riveiro-Alvarez, M.J. Trujillo-Tiebas, A. Gimenez, D. Cantalapiedra, E. Vallespin, J. Aguirre-Lamban,
C. Villaverde, C. Ayuso
Fundacion Jimenez Diaz, Department Genetics, Reyes Catolicos 2, 28040 Madrid, Spain, E-mail: rriveiro@fjd.es,
Tel.: +34-915504872
Missense/nonsense mutations (single base-pair substitutions)
Accession number:Codon number: Nucleotide substitution: Amino acid substitution:
Hm0701 192 CCC–CTC Pro–Leu
Gene Symbol: ALMS1
Disease: Alstrom syndrome
Kimberley Flintoff
St James’s University Hospital, DNA Laboratory, Clinical Genetics Department, Beckett Street, LS9 7TF Leeds, UK,
E-mail: kim.flintoff@leedsth.nhs.uk, Tel.: +44-113-2066058, Fax: +44-113-2665677
Richard Paisey
Consultant Physician, Torbay District General Hospital, Newton Road, TQ2 7AA, UK
Missense/nonsense mutations (single base-pair substitutions)
Accession number:Codon number: Nucleotide substitution: Amino acid substitution:
Hm0702 3001 tCAA–TAA Gln–Term
Comments: c.9001C > T, p.Q3001X
Gene Symbol: NF1
Disease: Neurofibromatosis 1
Sing-Chung Li, Cheng-Hung Huang, Kun-Long Hung
Taipei Medical University, College of Health Science, Department of Nutrition, Wusing 250, 110 Taipei, Taiwan, ROC,
E-mail: sinchung@tmu.edu.tw, Tel.: +886-2-27361661, Fax: +886-2-27393314
Missense/nonsense mutations (single base-pair substitutions)
Accession number:Codon number: Nucleotide substitution: Amino acid substitution:
Hm0703 553 tCAT–CGT His–Arg
Hum Genet (2007) 121:645–652 647
123
Gene Symbol: ABCA4
Disease: Stargardt disease
Jana Aguirre-Lamban, R. Riveiro-Alvarez, D. Cantalapiedra, E. Vallespin, M.J. Trujillo-Tiebas, C. Villaverde,
C. Ayuso
Fundacio
´n Jime
´nez Dı
´az, Department Gene
´tica, Avd. Reyes Cato
´licos, 2, 28040, Madrid, Spain, E-mail: jaguirre@fjd.es,
Tel.: +34-915-504872
Missense/nonsense mutations (single base-pair substitutions)
Accession number:Codon number: Nucleotide substitution: Amino acid substitution:
Hm0705 234 cCAG–TAG Gln–Stop
Gene Symbol: G6PD
Disease: Glucose-6-phosphate dehydrogenase deficiency
Licinio Manco, M. Leticia Ribeiro
Unidade de Hematologia Molecular, Hospital Pedia
´trico, Av Bissaya Barreto 1, 3000 Coimbra, Portugal, E-mail: lmanco@
antrop.uc.pt, Tel.: +351-239-829051, Fax: +351-239-82491
Missense/nonsense mutations (single base-pair substitutions)
Accession number:Codon number: Nucleotide substitution: Amino acid substitution:
Hm0706 198 CGC–CAC Arg–His
Gene Symbol: CHM
Disease: Choroideraemia
Cristina Villaverde, M.J. Trujillo-Tiebas, M. Garcia-Hoyos, N. Perez, R.C. Narvaiza, E. Guille
´n, C. Ayuso
Fundacio
´n Jime
´nez Dı
´az, Gene
´tica, Avda. Reyes Cato
´licos 2, 28040 Madrid, Spain, E-mail: cvillaverde@fjd.es, Tel.: +34-
915504872
Missense/nonsense mutations (single base-pair substitutions)
Accession number:Codon number: Nucleotide substitution: Amino acid substitution:
Hm0707 76 gCAA–TAA Gln–Stop
Gene Symbol: CHM
Disease: Choroideraemia
Cristina Villaverde, M.J. Trujillo-Tiebas, M. Garcia-Hoyos, R.C. Narvaiza, N. Perez, B. Garcia-Sandoval, C. Ayuso
Fundacio
´n Jime
´nez Dı
´az, Gene
´tica, Avda. Reyes Cato
´licos 2, 28040 Madrid, Spain, E-mail: cvillaverde@fjd.es, Tel.: +34-
915504872
Missense/nonsense mutations (single base-pair substitutions)
Accession number:Codon number: Nucleotide substitution: Amino acid substitution:
Hm0708 103 TATg–TAG Tyr–Stop
648 Hum Genet (2007) 121:645–652
123
Gene Symbol: NOTCH3
Disease: Cerebral autosomal dominant arteriopathy with subcortical infarcts and leucoencephalopathy (CADASIL)
Susana Ferreira
Faculdade de Medicina, Universidade do Porto, Servic¸o de Gene
´tica Me
´dica, Alameda Herna
ˆni Monteiro S/N, 4200-319
Porto, Portugal, E-mail: susanadg@med.up.pt, Tel.: +351-2-25513647, Fax: +351-2-25513648
Cristina Costa
Consulta de Neurologia, Hospital Fernando Fonseca, Amadora
Joa
˜o Paulo Oliveira
Consulta de Gene
´tica Me
´dica, Hospital Sa
˜o Joa
˜o, Porto, Portugal
Missense/nonsense mutations (single base-pair substitutions)
Accession number:Codon number: Nucleotide substitution: Amino acid substitution:
Hm0709 1099 TGC–TAC Cys–Tyr
Comments: Mutation identified in a 58-year-old female patient, with recurrent ischaemic strokes, in subcortical topo-
graphy. Autosomal dominant family history of recurrent strokes. Cerebral MRI suggestive of CADASIL. Muscular biopsy
showing electron-dense vascular deposits.
Gene Symbol: NOTCH3
Disease: Cerebral autosomal dominant arteriopathy with subcortical infarcts and leucoencephalopathy (CADASIL)
Susana Ferreira
Faculdade de Medicina, Universidade do Porto, Servic¸o de Gene
´tica Me
´dica, Alameda Herna
ˆni Monteiro S/N, 4200-319
Porto, Portugal, E-mail: susanadg@med.up.pt, Tel.: +351-2-25513647, Fax: +351-2-25513648
Rosa S. Silva
Consulta de Neurologia, Hospital de Matosinhos
Joa
˜o Paulo Oliveira
Consulta de Gene
´tica Me
´dica, Hospital Sa
˜o Joa
˜o, Porto, Portugal
Missense/nonsense mutations (single base-pair substitutions)
Accession number:Codon number: Nucleotide substitution: Amino acid substitution:
Hm0710 568 TGT–TAT Cys–Tyr
Gene Symbol: NOTCH3
Disease: Cerebral autosomal dominant arteriopathy with subcortical infarcts and leucoencephalopathy (CADASIL)
Susana Ferreira
Faculdade de Medicina, Universidade do Porto, Servic¸o de Gene
´tica Me
´dica, Alameda Herna
ˆni Monteiro S/N,
4200-319 Porto, Portugal, E-mail: susanadg@med.up.pt, Tel.: +351-2-25513647, Fax: +351-2-25513648
Paulo Fontoura, Rui Guerreiro
Servic¸o de Neurologia, Hospital Sa
˜o Bernardo, Setu
´bal, Portugal
Joa
˜o Paulo Oliveira
Consulta de Gene
´tica Me
´dica, Hospital Sa
˜o Joa
˜o, Porto, Portugal
Hum Genet (2007) 121:645–652 649
123
Missense/nonsense mutations (single base-pair substitutions)
Accession number:Codon number: Nucleotide substitution: Amino acid substitution:
Hm0711 978 cAGC–CGC Ser–Arg
Comments: Mutation identified in a 64-year-old female patient with cerebrovascular disease, dementia, epilepsy and
psychiatric problems. Had first stroke in the fifth decade of life. Cerebral MRI with white matter abnormalities.
Gene Symbol: FZD4
Disease: Familial exudative vitreoretinopathy
Ve
´ronique Vieira, Guillaume de la Houssaye, Anouk Dansault, Elodie Perez, Olivier Roche, Jean-Louis Dufier,
Ce
´cile Marsac, Maurice Menasche, Marc Abitbol
Faculte
´de Medecine, Necker-Enfants Malades, rue de vaugirard 156, 75015 Paris, France, E-mail: vieira@necker.fr, Tel.:
+33-1-40615656, Fax: +33-1-40615474
Missense/nonsense mutations (single base-pair substitutions)
Accession number:Codon number: Nucleotide substitution: Amino acid substitution:
Hm0712 499 cAAA–GAA Lys–Glu
Comments: This mutation was found in three members of a family. The two children presented typical clinical features of
FEVR whereas the mother is asymptomatic.
This is a FZD4 mutation affecting the Lys–Thr–X–X–X–Trp motif which is involved in the activation of Wnt/beta catenin
signalling.
Gene Symbol: TPI1
Disease: Triosephosphate isomerase deficiency
L. Manco, M.L. Ribeiro
Department of Anthropology, University of Coimbra, 3000 Coimbra, Portugal, E-mail: lmanco@antrop.uc.pt, Tel.: +351-
239-829051, Fax: +351-239-823491
Missense/nonsense mutations (single base-pair substitutions)
Accession number:Codon number: Nucleotide substitution: Amino acid substitution:
Hm0713 62 GCT–GAT Ala–Asp
Comments: A previously undescribed mutation in exon 2 of the TPI gene, the transversion 188 C > A predicting the
amino acid change 62 Ala > Asp, was identified in a patient with Triosephosphate Isomerase deficiency, compound
heterozygous with the second mutation 104 Glu > Asp. The drastic non-conservative replacement of the nonpolar Ala by
the polar acidic residue Asp, and the evolutionary conservation of Ala 62 from C. elegans to humans indicates that this
mutation certainly affects the TPI enzymatic activity.
Gene Symbol: GUCY2D
Disease: Early onset retinitis pigmentosa
A. Avila-Fernandez, E. Vallespin, D. Cantalapiedra, R. Riveiro-Alvarez, A. Gimenez, M.J. Trujillo-Tiebas, C. Ayuso
Department of Genetics, Fundacion Jimenez Diaz, Avd. Reyes Catolicos, 2, 28040 Madrid, Spain, E-mail: aavila@fjd.es,
Tel.: +34-915504872
650 Hum Genet (2007) 121:645–652
123
Missense/nonsense mutations (single base-pair substitutions)
Accession number:Codon number: Nucleotide substitution: Amino acid substitution:
Hm0714 587 CTC–CGC Leu–Arg
Gene Symbol: EPM2A
Disease: Lafora progressive myoclonus epilepsy
M.J. Trujillo-Tiebas, M. Fenollar-Corte
´s, P. Go
´mez-Garre
´, I. Lorda-Sa
´nchez, J.M. Serratosa, C. Ayuso Garcı
´a
Dpto.Gene
´tica, F.J.D.-CAPIO, Av.Reyes Cato
´licos N°2, 28040 Madrid, Spain, E-mail: mjtrujillo@fjd.es,
Tel.: +34-915504872
Missense/nonsense mutations (single base-pair substitutions)
Accession number:Codon number: Nucleotide substitution: Amino acid substitution:
Hm0716 278 TGCg–TGA Cys–STOP
Comments: The mutation is located in nt.834 in exon 4. The other mutation was W165X in codon 165 (Ianzano et al.
2004). The patient is Spanish.
Gene Symbol: TAP2
Disease: HLA class I deficiency
Henri de la Salle, Dominique Fricker, Daniel Hanau, Daman Langguth, Patrick Hogan
EFS-Alsace, NSERM U725, rue Spielmann10, 67065, Strasbourg, France, E-mail: henri.delasalle@efs-alsace.fr, Tel.: +33-
388-212525, Fax: +33-388-212544
Missense/nonsense mutations (single base-pair substitutions)
Accession number:Codon number: Nucleotide substitution: Amino acid substitution:
Hm0717 623 aCGA–TGA Arg–Stop
Comments: Associated to HLA haplotype:
A*01 B*08 C*w7 DRB1*0701 DQB1*02
Gene Symbol: NOTCH3
Disease: Cerebal autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy
Susana Ferreira
Faculdade de Medicina, Universidade do Porto, Servic¸o de Gene
´tica Me
´dica, Alameda Herna
ˆni Monteiro, 4200-319 Porto,
Portugal, E-mail: susanadg@med.up.pt, Tel.: +351-2-25513647, Fax: +351-2-25513648
Filipa Malheiro
Hospital Egas Moniz, Lisboa, Portugal
Joa
˜o Paulo Oliveira
Hospital Sa
˜o Joa
˜o, Porto, Portugal
Hum Genet (2007) 121:645–652 651
123
Missense/nonsense mutations (single base-pair substitutions)
Accession number:Codon number: Nucleotide substitution: Amino acid substitution:
Hm0718 577 cACA–GCA Thr–Ala
Comments: Mutation not found in a sample of 100 Portuguese healthy individuals.
652 Hum Genet (2007) 121:645–652
123