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Subcutaneous Mycoleptodiscus indicus Infection in an Immunosuppressed Dog

American Society for Microbiology
Journal of Clinical Microbiology
Authors:
JOURNAL OF CLINICAL MICROBIOLOGY, Aug. 2010, p. 3008–3011 Vol. 48, No. 8
0095-1137/10/$12.00 doi:10.1128/JCM.02368-09
Copyright © 2010, American Society for Microbiology. All Rights Reserved.
CASE REPORTS
Subcutaneous Mycoleptodiscus indicus Infection in an
Immunosuppressed Dog
Catherine A. Metry,
1
Patricia S. Hoien-Dalen,
2
Carol W. Maddox,
3
Elizabeth H. Thompson,
4
Deanna A. Sutton,
4
Anna M. Romanelli,
5
Brian L. Wickes,
5
and Amy L. MacNeill
3
*
Department of Veterinary Clinical Medicine,
1
Veterinary Diagnostic Laboratory,
2
and Department of Pathobiology,
3
University of
Illinois, Urbana, Illinois, and Fungus Testing Laboratory, Department of Pathology,
4
and Department of Microbiology,
5
University of Texas Health Science Center, San Antonio, Texas
Received 3 December 2009/Returned for modification 20 January 2010/Accepted 21 May 2010
An 8-year-old dog presented with several dermal excoriations. Lesion cytology revealed pyogranulomatous
inflammation with branching, septate hyphae. A mold identified as Mycoleptodiscus indicus by morphology and
sequencing was cultured from fine-needle aspirates. This is the first report of a Mycoleptodiscus species as an
etiologic agent in a dog.
CASE REPORT
An 8-year-old, outdoor, male, castrated pointer dog was
presented to the University of Illinois Veterinary Teaching
Hospital in April 2009 for recheck blood work 2 months after
diagnosis of immune-mediated hemolytic anemia. Immuno-
suppressive treatment included daily oral administration of 2.1
mg prednisone/kg of body weight and 10.4 mg/kg cyclosporine
(Atopica; Novartis Animal Health), along with 20 mg aspirin to
prevent clot formation and 20 mg famotidine to limit gastro-
intestinal upset associated with the steroid administration. In
addition, 200 mg doxycycline had been given twice daily for
several weeks to treat for a possible underlying tick-borne
illness.
The general physical exam revealed a potbellied appearance,
hepatomegaly, and moderate to marked cachexia. The left rear
leg was swollen, with pitting edema and a draining tract on the
lateral aspect of the hock, the left popliteal lymph node was
markedly enlarged, and several areas of minor dermal excori-
ations were present along the nasal planum. In addition, the
dog’s weight had decreased from 38.5 kg to 35 kg over the
2-month time period. Clinical differentials for the draining
tract included phaeohyphomycosis, zygomycosis, pythiosis, lag-
enidiosis, sporotrichosis, and atypical bacterial infections, such
as nocardiosis, actinomycosis, and mycobacteriosis.
Fine-needle aspirates were acquired from the left popliteal
lymph node and from lesions on the bridge of the nose and the
distal aspect of the left hind leg. Aspirates were submitted for
cytologic evaluation, aerobic bacterial cultures, and fungal cul-
tures. All cytology samples were Wright-Giemsa stained and
were highly cellular, with a mixed population of severely de-
generate neutrophils and reactive macrophages, including ep-
ithelioid macrophages and multinucleated giant cells. Bacterial
cocci were noted extracellularly and within neutrophils. Aspi-
rates from all sites contained basophilic, septate hyphae which
measured 30 to 100 m in length and 3 to 6 m in width (Fig.
1). Some hyphae terminated in bulbous ends. The sample from
the popliteal lymph node also contained several lymphocytes
and rare, large, round yeastlike structures which rarely exhib-
ited a narrow-base bud. The samples were interpreted as
marked pyogranulomatous inflammation with bacterial and
fungal sepsis.
Pending results of bacterial and fungal cultures, itraconazole
was started at 5 mg/kg once daily, in addition to 32 mg/kg
terbinafine once daily and 29 mg/kg cephalexin twice daily. The
aerobic bacterial culture revealed a Staphylococcus pseudinter-
medius strain that was resistant to cephalexin but susceptible to
clindamycin, amoxicillin-clavulanate, and enrofloxacin. Cepha-
lexin was discontinued and clindamycin (12 mg/kg) once daily
was started.
Fungal cultures at the University of Illinois Veterinary Di-
agnostic Laboratory recovered a rapidly growing mold on Sa-
bouraud dextrose agar after 3 days of incubation at 25°C. The
colonies had a uniform morphological appearance, consistent
with isolation of a single species of fungus. By day 10, the
colonies had a dark-brown reverse with a white woolly surface.
Hyaline conidia were present at 2 weeks but were not readily
identifiable, so internal transcribed spacer (ITS) sequencing
was performed as described by Katsu et al. (6). A specific
sequence match was not available in the NCBI GenBank da-
tabase using the BLASTn algorithm in April 2009; therefore,
the isolate was submitted to the Fungus Testing Laboratory at
the University of Texas Health Science Center for additional
sequencing and morphological studies under the culture col-
lection number R-4334.
For morphological studies, the isolate was subcultured onto
potato flake agar, prepared in-house, and incubated at 25°C.
After 2 weeks, colonies were moderately fast growing, funicu-
lous, and gray-yellow with patches of white and exhibited a
* Corresponding author. Mailing address: University of Illinois, De-
partment of Pathobiology, 2001 S. Lincoln Ave., Urbana, IL 61802.
Phone: (217) 244-3950. Fax: (217) 244-7421. E-mail: almac@illinois
.edu.
Published ahead of print on 2 June 2010.
3008
yellow reverse and a diffusing yellow pigment. After 21 days,
colonies were dark gray and the yellow pigment was no longer
present. The isolate grew well at both 25°C and 35°C. Micro-
scopically (on slide culture preparations), abundant appresso-
ria and small aggregates of dark-brown cells (sporodochial
conidiomata) were present. Appressoria were brown, smooth,
not deeply lobed, and 0- or 1-septate (Fig. 2). Sporodochial
aggregates were irregular in size and shape (Fig. 3A). Conid-
iogenous cells were broadly ovate or ampulliform with a prom-
inent aperture and flared collarette (Fig. 3A and B). Conidia
were hyaline, smooth, thin walled, broadly lunate, and mostly
0-septate (rarely 1-septate) (Fig. 3C) and measured 5 to 6 m
at the widest part and 16 mto20m long. The presence and
number of polar and/or lateral appendages varied, ranging
from none to polar at only one or both ends to polar and lateral
on one or both sides (Fig. 3D). Appendage lengths varied and
were up to 12 m long. As the culture aged, conidial pro-
duction began to decrease, with virtually no conidiogenesis
occurring after week 4. The optimal time for observing
conidia appeared to be within the first 1 to 2 weeks following
subculture. Based upon the morphological features de-
scribed above, the isolate was identified as a Mycoleptodiscus
species (1, 10, 11).
Antifungal susceptibility testing was performed according to
the method described in CLSI approved standard M38-A2 (3).
Results read at 24 and 48 h were as follows: amphotericin B
(0.125 and 0.25 g/ml, respectively), itraconazole (0.25 and 0.5
g/ml), voriconazole (0.25 and 0.5 g/ml), posaconazole
(0.03 and 0.06 g/ml), and terbinafine (0.015 and 0.015 g/
ml). Although no defined breakpoints are available for Myco-
leptodiscus species, the isolate appears susceptible to all agents
tested based upon normally achievable serum concentrations
using standard dosing regimens.
Template DNA was prepared from a fresh subculture of
R-4334, which had been grown on potato dextrose agar (Difco,
Detroit, MI) for 20 h at 30°C. The sample was suspended in 50
l of PrepMan Ultra reagent (Applied Biosystems, Foster
City, CA) and processed according to the manufacturer’s in-
structions. DNA amplification by PCR was performed in a
total volume of 50 l using 3 l of the PrepMan supernatant as
a template, high-fidelity Pfx50 DNA polymerase (Invitrogen,
Carlsbad, CA), and primers ITS1 and ITS4, as previously de-
scribed (12). In addition, D1/D2 amplicons were obtained us-
ing primers NL1 and NL4 and PCR conditions described pre-
viously (7, 9). PCRs were run in a PTC-100 thermocycler (MJ
Research, Watertown, MA) using a three-step protocol, which
consisted of 30 cycles with an annealing temperature of 58°C
FIG. 1. Cytology of a fine-needle aspirate from a draining lesion on
the left hind limb of a dog showing branching, septate hyphae (filled
arrows). Bulbous structures at the terminal ends of the hyphae are also
depicted (open arrows). Wright-Giemsa stain. Magnification, 500.
FIG. 2. Appressoria of this Mycoleptodiscus species as seen on a potato flake agar slide culture preparation mounted in lactophenol cotton
blue.
VOL. 48, 2010 CASE REPORTS 3009
and a 1-min extension time. The PCR products were cleaned
using a QIAquick PCR purification kit (Qiagen, Inc., Valencia,
CA). Purified templates were sequenced in both directions at
the University of Texas Health Science Center at San Antonio
Advanced Nucleic Acids Core Facility using the same primers
for ITS and D1/D2 amplification. Due to the paucity of se-
quence information available at the time of an initial search in
May 2009, we were unable to confirm the morphological iden-
tification. However, a subsequent ITS search of the NCBI
GenBank database in April 2010 revealed three hits at 99.5%
identity (578/580, 576/577, and 567/568 nucleotides) at a 90%
query coverage, corresponding to Mycoleptodiscus indicus
(GenBank accession no. GU980698, GU980694, and
GU980696). The next-closest species-level record was Myco-
leptodiscus terrestris, which showed only 79% identity at a 100%
query coverage. The D1/D2 BLASTn search showed similar
results. Two records were found with 100% identity (616/616
nucleotides) at a query coverage of 100%. These two isolates
were also M. indicus (accession no. GU980695 and
GU980693). A third M. indicus record (accession no.
GU980697) showed 99% identity but only at a 63% query
coverage.
As for the outcome of this case, the dog was seen at the
beginning of May 2009 and had multiple new subcutaneous
and dermal nodules along the rib cage and distal limbs.
Marked cellulitis was still present on the left distal rear limb.
Abdominal ultrasound was performed and revealed hepato-
megaly and a nonobstructive cholelith. Thoracic radiographs
indicated that the dog had generalized megaesophagus. Ra-
diographs of the distal aspect of the left tibia revealed cellulitis
and a tibial malunion fracture with bony proliferation. The
malunion fracture was thought to be an old injury; however,
mild osteomyelitis could not be ruled out. Epsom salt soaks
and whirlpool bath treatment were initiated in an effort to
decrease the cellulitis, and mupirocin was started topically to
help treat surface infections. At a subsequent visit, a slight
increase in respiratory effort was noted and the dog’s sclera
had a mild jaundiced appearance, consistent with hemolytic
anemia. The dog presented several days later to the emergency
service for lethargy, regurgitation, and aspiration pneumonia
secondary to megaesophagus. Clindamycin was discontinued,
as it may have contributed to the development of generalized
megaesophagus, and amoxicillin-clavulanate and enrofloxacin
were prescribed to treat the aspiration pneumonia.
Due to the severe clinical signs of iatrogenic hyperadreno-
corticism, several attempts were made to decrease the dosage
of prednisone being administered to this patient, but with each
attempt, the packed-cell volume decreased steadily over sev-
eral days and there was evidence of hemolysis. As a result, the
patient was maintained on oral prednisone (40 mg every 12 h)
FIG. 3. Microscopic features of this Mycoleptodiscus species. (A) Small aggregate of sporodochial cells, a conidiogenous cell, and a conidium
being released. Slide culture preparation mounted in lacto-fuchsin. (B) Conidiogenous cells with collarettes, and single-celled conidia with very
short appendages. (C) Two-celled conidium. (D) Cellophane tape preparation demonstrating single-celled conidia with both polar and lateral
appendages.
3010 CASE REPORTS J. CLIN.MICROBIOL.
and cyclosporine (400 mg daily), along with itraconazole, ter-
binafine, amoxicillin-clavulanate, and enrofloxacin, as previ-
ously described. The subcutaneous lesions waxed and waned
during the course of treatment. The dog was discharged from
the hospital on hospice care at the end of May and passed away
at his home on 12 June 2009, approximately 2 months after
diagnosis of this subcutaneous mycosis. A necropsy was not
performed.
Anamorphic fungi in the genus Mycoleptodiscus are in the
sexual-perithecium-forming family Magnaporthaceae. They
are typically thought of as plant pathogens; however, M. indi-
cus has been reported as an etiologic agent in immunosup-
pressed humans (5, 8) and, more recently, in a healthy human
male (4). Infections are presumably acquired by traumatic
implantation of the fungus.
Species identification of the etiologic agent in this case
proved difficult. The most informative phenotypic features for
identification of M. indicus include the presence of appressoria
(Fig. 2) (also seen in a few other clinically significant molds,
such as Colletotrichum species), dark phialidic, conidiogenous
cells with prominent collarettes aggregated into sporodochial
masses (Fig. 3A and B), and the production of large (10 to 16
by5to7m), hyaline, typically single-celled, curved conidia
(Fig. 3A and B). The production of septate conidia seen in the
initial morphological workup suggested M. terrestris (10, 11)
rather than M. indicus. The production of a yellow diffusible
pigment on potato dextrose agar noticed in a subsequent ex-
amination in combination with the shape of the appressoria
and the variable nature of the conidia also suggested two
species with lateral appendages, namely, Mycoleptodiscus varia-
bilis and/or Mycoleptodiscus lateralis (1).
Subsequent to submission of this report, ITS and D1/D2
nucleotide data for three human strains of M. indicus were
deposited into GenBank. These three isolates showed the
highest percent identities to our isolate, with all identities for
both loci being 99.5%. These new deposits are from the
University of Alberta Microfungus Collection and Herbarium.
Since they are culture collection isolates and displayed good
query coverage, there is high confidence in the sequence iden-
tification.
The identification of this isolate as M. indicus by sequence
identity expands the known morphological features of this
species, as conidia that are septate and/or exhibit lateral
appendages have not been previously described. In addition,
this is the first reported case of subcutaneous M. indicus
infection in a dog.
Nucleotide sequence accession numbers. The D1/D2 se-
quence was deposited into GenBank under accession no.
GU220383. The ITS sequence was deposited under accession
no. GU220382. Our isolate was deposited into the University
of Alberta Microfungus Collection and Herbarium under ac-
cession number UAMH 11157.
B.L.W. is supported by grant PR054228 from the U.S. Army Med-
ical Research and Materiel Command, Office of Congressionally Di-
rected Medical Research Programs. A.M.R. is supported by NIDCR
grant DE14318 (CO STAR).
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VOL. 48, 2010 CASE REPORTS 3011
... In an immunocompetent healthy man, M. indicus was reported to cause septic arthritis [7]. Infections are presumably acquired by traumatic implantation [8], with plants implied as potential sources of infection [7]. In veterinary medicine, M. indicus has been reported in one case of an immunosuppressed dog, presenting with dermal excoriations and draining tract from a swollen leg [8]. ...
... Infections are presumably acquired by traumatic implantation [8], with plants implied as potential sources of infection [7]. In veterinary medicine, M. indicus has been reported in one case of an immunosuppressed dog, presenting with dermal excoriations and draining tract from a swollen leg [8]. To our knowledge, this is the first report in a cat to provide detailed identification of this microorganism via cytology, fungal culture, DNA sequencing, phylogenetic analysis, and to report treatment with a successful clinical outcome. ...
... M. indicus is a rare cause of human and animal infections, though it is a well-recognized plant pathogen [1]. There are few reports in the literature of M. indicus infection in humans and only one report in a dog [3,[5][6][7][8]. M. lateralis, a similar species to M. indicus, was reported to cause subcutaneous phaeohyphomycosis in a cat from Australia [16]. ...
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Background: Mycoleptodiscus indicus is a dematiaceous hyphomycete fungus found on plant leaves. It has been rarely reported as a cause of human or animal disease, possibly because it is difficult to culture and identify from clinical specimens. Infections are presumably acquired by traumatic implantation. Case presentation: An 8-year-old non-immunosuppressed cat from Georgia, USA, presented with a left front leg swelling without lameness. Cytology from a fine needle aspirate revealed pyogranulomatous inflammation with both cytoplasmic and extracellular fungal elements. There were septate hyphae with irregularly sized segments, non-staining uneven walls, and rounded yeast-like forms from which longer hyphae arose in a hub-and-spoke pattern. A mold was isolated on agar from a fine needle aspirate collected 1 week later and identified as M. indicus by morphology, DNA sequencing and phylogenetic analysis. The cat recovered completely and uneventfully with antifungal treatment. Conclusions: We report a previously undescribed presentation of M. indicus causing a subcutaneous infection in a cat with successful antifungal treatment. In this study we highlight the potential of M. indicus to infect immunocompetent animals, and the veterinary medical community should be aware of its unusual but characteristic clinical, microbiological and cytologic presentation.
... Furthermore, analyses of sequences deposited in the GenBank database as M. indicus or Myco leptodiscus sp. (Dewar & Sigler 2010, Metry et al. 2010, Koo et al. 2012 showed that they are related to Muyocopron (Muyocopronales). Muyocopron was proposed by Spegazzini (1881), re-described by Saccardo (1883), and its taxonomical placement treated initially in Microthyriaceae (Von Arx & Müller 1975, Lumbsch & Huhndorf 2007 and later in Muyo copronaceae , Pang et al. 2013, Mapook et al. 2016a. ...
... In New Zealand, Koo et al. (2012) reported an association with Mycoleptodiscus from progressive necrotizing fungal cellulitis and myositis in the leg of a patient with glioblastoma multiforme. Domesticated animals were also reported with infections associated with Mycoleptodiscus species, such as a subcutaneous infection in a cat in Australia (Hull et al. 1997), and in an immunosuppressed dog in the USA (Metry et al. 2010 The aim of the present study is to clarify the taxonomy and phylogeny of Mycoleptodiscus species within Ascomycota. For this purpose, we used a set of strains of Mycoleptodiscus species isolated from clinical and plant specimens, including the available ex-type strains, and performed the multi-locus analyses of ITS rDNA, LSU, rpb1, rpb2 and tef1 sequences. ...
... The first report of Muyocopron (as Mycoleptodis cus) as etiologic agent of phaeohyphomycosis was attributed to M. indicus (Padhye et al. 1995). Since then, several authors have reported clinical cases of M. indicus in human and other mammals (Garrison et al. 2008, Dewar & Sigler 2010, Metry et al. 2010. However, the LSU and ITS sequences data from those strains indicated close affinities with Mu. laterale. ...
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Mycoleptodiscus includes plant pathogens, animal opportunists, saprobic and endophytic fungi. The present study presents the first molecular phylogeny and revision of the genus based on four loci, including ITS, LSU, rpb2, and tef1. An extensive collection of Mycoleptodiscus cultures, including ex-type strains from the CBS, IMI, MUCL, BRIP, clinical isolates from the USA, and fresh isolates from Brazil and Spain, was studied morphologically and phylogenetically to resolve their taxonomy. The study showed that Mycoleptodiscus sensu lato is polyphyletic. Phylogenetic analysis places Mycoleptodiscus in Muyocopronales (Dothideomycetes), together with Arxiella, Leptodiscella, Muyocopron, Neocochlearomyces, and Paramycoleptodiscus. Mycoleptodiscus terrestris, the type species, and M. sphaericus are reduced to synonyms, and one new species is introduced, M. suttonii. Mycoleptodiscus atromaculans, M. coloratus, M. freycinetiae, M. geniculatus, M. indicus, M. lateralis (including M. unilateralis and M. variabilis as its synonyms) and M. taiwanensis belong to Muyocopron (Muyocopronales, Dothideomycetes), and M. affinis, and M. lunatus to Omnidemptus (Magnaporthales, Sordariomycetes). Based on phylogenetic analyses we propose Muyocopron alcornii sp. nov., a fungus associated with leaf spots on Epidendrum sp. (Orchidaceae) in Australia, Muyocopron zamiae sp. nov. associated with leaf spots on Zamia (Zamiaceae) in the USA, and Omnidemptus graminis sp. nov. isolated from a grass (Poaceae) in Spain. Furthermore, Neomycolepto­discus venezuelense gen. & sp. nov. is introduced for a genus similar to Mycoleptodiscus in Muyocopronaceae.
... Mycoleptodiscus indicus, a dematiaceous hyphomycete, is a common contaminant of tropical or subtropical soils and occurs on the leaves of different plants for which it is pathogenic, particularly but not exclusively monocotyledons [1]. It has only been sporadically described as a subcutaneous infection agent in immunocompetent animals [2][3][4] and in immunocompromised patients. Compared to the general population, this type of patient has an increased risk of developing opportunistic fungal infections with greater morbidity and mortality. ...
... The patient was subjected to induction treatment with liposomal Amphotericin B, followed by long-term therapy with Itraconazole. The treatment, together with the drain of the abscess, allowed the complete resolution of the lesion [1][2][3][4][5][6][7][8][9]. ...
... In 2019, an 8-month-old immunocompetent cat in Georgia, USA, was diagnosed with an infection on the front knee with M. indicus (Maboni et al., 2019). It also caused several dermal excoriations in an 8-year-old immunodeficient dog (Metry et al., 2010). ...
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Background: Lotus, Nelumbo nucifera Gaertn is Vietnam’s symbol and Buddhism’s flower and plays an essential part in rural Vietnam’s economy as all aspects of lotus could bring benefits to farmers. But, unfortunately, lotus yield in Vietnam is seriously affected by various plant diseases. Among them, leaf blight is currently emerging as one of the primary diseases devastating lotus crops in Vietnam, in which there are large necrotic parts on lotus leaves, flowers and seeds. Methods: Aloe barbadensis extract was used for synthesizing silver nanoparticles. Leaf blight lotus leaves were collected to isolate pathogenic fungi-infection of isolated pathogenic fungi on the healthy lotus and then identify hidden mold by 28S rRNA sequencing. Determination of in vitro minimal inhibition concentration of nano-silver was conducted according to Azizi. The reduction of disease symptoms and biological characteristics of the treated lotus was observed. Result: Morphological analysis and molecular identification of 28S rRNA sequencing showed that the pathogenic microorganism was Mycoleptodiscus indicus (M. indicus). Both in vitro antifungal activity and in vivo treatment of leaf blight lotus using a nano-silver solution showed that 30 ppm of nano-silver was the minimal inhibition concentration (MIC) for totally eradicating M. indicus growth. This was the first time M. indicus was reported to infect and cause leaf blight on a lotus. Previously, M. indicus was a well-known plant pathogen that could cross-kingdom infect humans and animals. Thus, the fact that lotus is widely cultured in Vietnamese rural could increase the chance for M. indicus to spread; hence, this raised the alarm about its potential harm to plants, humans and animals. And, significantly, it revealed nano-silver as a possible approach to prevent M. indicus.
... [1][2][3] In the last 2 decades, there have been increasing reports of M. indicus causing opportunistic phaeohyphomycosis in human and veterinary medicine. [4][5][6][7][8] Typically, it causes local cutaneous or subcutaneous infections after traumatic tissue inoculation. Initially reported in immunocompromised patients, this opportunistic fungus also may affect immunocompetent patients. ...
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Background: Opportunistic invasive fungal infections (OIFIs) occur in dogs administered immunosuppressive medications. However, the epidemiology of OIFIs among dogs undergoing immunosuppressive treatment is poorly understood. The aims of this study were to (1) estimate the incidence of OIFIs among dogs diagnosed with certain immune-mediated diseases and treated with immunosuppressive drugs, and (2) determine if administration of particular drug(s) was a risk factor for OIFIs. Hypothesis: Dogs receiving cyclosporine treatment (alone or as part of a multidrug protocol) are at higher risk of developing OIFIs. Animals: One hundred and thirteen client-owned dogs diagnosed with select immune-mediated diseases: 42 with IMHA, 29 with ITP, 34 with IMPA, and 8 with Evans syndrome. Methods: Retrospective cohort study. Medical records of dogs presenting to the Texas A&M University, Veterinary Medical Teaching Hospital between January 2008 and December 2015, and treated for 1 or more of IMHA, IMPA, ITP, or Evans syndrome were retrospectively reviewed. Dogs that did not develop an OIFI were excluded if they died, were euthanized, or were lost to follow-up within 120 days of initiation of immunosuppressive treatment. Results: Fifteen dogs of 113 (13%) were diagnosed with an OIFI based on 1 or more of cytology, culture, or histopathology. The odds of developing an OIFI were greater among dogs that were treated with cyclosporine (OR = 7.1, P = 0.017; 95% CI, 1.5-34.4) and among male dogs (OR = 5.1, P = 0.018; 95% CI, 1.4-17.9). Conclusions and clinical importance: OIFIs were significantly more likely in male dogs and those receiving cyclosporine. It is important to consider OIFIs as a potential complication of immunosuppressive treatment, particularly cyclosporine.
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Sequences of the internal transcribed spacer (ITS) region including the 5.8S rRNA gene delineated seven genotypes within the three varieties of Cryptococcus neoformans via specific combinations of eight nucleotide differences located at positions 10, 11, 15, 19, 108 (ITS1), 221 (5.8S), 298 and 346 (ITS2). The ITS types correlated to polymerase chain reaction fingerprint/random amplification of polymorphic DNA (RAPD) molecular types: with ITS type 1 (ATACTAGC)=C. neoformans var. grubii, molecular types VNI+VNII and the serotype A allele of the AD hybrid, VNIIIA; ITS type 2 (ATATAGGC)=the serotype D allele of the AD hybrid, VNIIIB, and C. neoformans var. neoformans, VNIV; and ITS type 3 (GCGCTGGC) and ITS type 7 (ACGCTGGC)=VGI=RAPD type III, ITS type 4 (ACACTGAC)=VGII=RAPD type II, ITS type 5: (ACACTGGG)=VGIII=RAPD type I, ITS type 6 (ACACTGGC)=VGIV=RAPD type IV, all corresponding to C. neoformans var. gattii. Cloned sequences from serotype AD revealed that the hybrid serotype is diploid at the ITS1-5.8S-ITS2 locus carrying the ITS type 1 (ATACTAGC) and the ITS type 2 (ATATAGGC) alleles. ITS sequencing is a useful technique for genotyping the three C. neoformans varieties and for subtyping within C. neoformans var. gattii.