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Multi-sensor Approach for the Estimation of Above-Ground Biomass of Mangroves

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Abstract

Mangroves are woody halophytes thriving in muddy substratum along the coastal areas of the tropics and sub-tropics. They are often credited for their exceptional carbon sequestration capability. Estimating above-ground biomass (AGB) through field survey is tedious, particularly in a hostile environment like a mangrove ecosystem. However, the quantification of AGB is made possible with the help of continued advancements in sensor technology and computational algorithms. This research attempts to model the AGB of mangroves present in Bhitarkanika, Odisha, using a multi-sensor approach. We utilized multispectral Sentinel-2 (SM) and Landsat-8 (LO), and hyperspectral Airborne Visible Infra-Red Imaging Spectrometer—Next Generation (AN) datasets in our analysis. The mangrove biomass was calculated for 42 sample plots from a field survey using species specific and common allometric equations. After data-specific preprocessing; six feature sets namely reflectance bands, band ratios, vegetation indices (VIs), texture-based Gray Level Co-occurrence Matrix (GLCM) features of reflectance, band ratios and VIs were extracted for each dataset. The co-located set of features derived from each dataset were regressed against the AGB estimated using field methods of 42 sample plots (1) independently for each feature set, (2) in a combination of feature sets for each dataset and (3) in a combination of the feature sets of all three datasets as a multi-sensor approach. Feature selection techniques were used to get the best possible output of combined AN, SM and LO datasets. The results show that the combination of textural features gave better prediction models than independent sets of features. Also, Genetic Algorithm (GA) and Recursive Feature Elimination CV (RFECV) proved to be better feature selectors than other classical approaches. AN, SM and LO resulted in the R2 value of 0.41, 0.85 and 0.35 with RMSE of 356.81, 195.49 and 366.84 t/ha, respectively; while, the multisensory approach yielded a maximum R2 value of 0.7 and RMSE of 244.86 t/ha. The results show that the structural information of vegetation canopy obtained from textural parameters of different input bands has improved the regression model to predict the biomass.

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Farmers must balance the competing goals of supplying adequate N for their crops while minimizing N losses to the environment. To characterize the spatial variability of N over large fields, traditional methods (soil testing, plant tissue analysis, and chlorophyll meters) require many point samples. Because of the close link between leaf chlorophyll and leaf N concentration, remote sensing techniques have the potential to evaluate the N variability over large fields quickly. Our objectives were to (1) select wavelengths sensitive to leaf chlorophyll concentration, (2) simulate canopy reflectance using a radiative transfer model, and (3) propose a strategy for detecting leaf chlorophyll status of plants using remotely sensed data. A wide range of leaf chlorophyll levels was established in field-grown corn (Zea mays L.) with the application of 8 N levels: 0%, 12.5%, 25%, 50%, 75%, 100%, 125%, and 150% of the recommended rate. Reflectance and transmittance spectra of fully expanded upper leaves were acquired over the 400-nm to 1,000-nm wavelength range shortly after anthesis with a spectroradiometer and integrating sphere. Broad-band differences in leaf spectra were observed near 550 nm, 715 nm, and >750 nm. Crop canopy reflectance was simulated using the SAIL (Scattering by Arbitrarily Inclined Leaves) canopy reflectance model for a wide range of background reflectances, leaf area indices (LAI), and leaf chlorophyll concentrations. Variations in background reflectance and LAI confounded the detection of the relatively subtle differences in canopy reflectance due to changes in leaf chlorophyll concentration. Spectral vegetation indices that combined near-infrared reflectance and red reflectance (e.g., OSAVI and NIR/Red) minimized contributions of background reflectance, while spectral vegetation indices that combined reflectances of near-infrared and other visible bands (MCARI and NIR/Green) were responsive to both leaf chlorophyll concentrations and background reflectance. Pairs of these spectral vegetation indices plotted together produced isolines of leaf chlorophyll concentrations. The slopes of these isolines were linearly related to leaf chlorophyll concentration. A limited test with measured canopy reflectance and leaf chlorophyll data confirmed these results. The characterization of leaf chlorophyll concentrations at the field scale without the confounding problem of background reflectance and LAI variability holds promise as a valuable aid for decision making in managing N applications.
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Different approaches to the classification of remotely sensed data of mangroves are reviewed, and five different methodologies identified. Landsat TM, SPOT XS and CASI data of mangroves from the Turks and Caicos Islands, were classified using each method. All classifications of SPOT XS data failed to discriminate satisfactorily between mangrove and non-mangrove vegetation. Classification accuracy of CASI data was higher than Landsat TM for all methods, and more mangrove classes could be discriminated. Merging Landsat TM and SPOT XP data improved visual interpretation of images, but did not enhance discrimination of different mangrove categories. The most accurate combination of sensor and image processing method for mapping the mangroves of the eastern Caribbean islands is identified.
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Plenty of feature selection methods are available in literature due to the availability of data with hundreds of variables leading to data with very high dimension. Feature selection methods provides us a way of reducing computation time, improving prediction performance, and a better understanding of the data in machine learning or pattern recognition applications. In this paper we provide an overview of some of the methods present in literature. The objective is to provide a generic introduction to variable elimination which can be applied to a wide array of machine learning problems. We focus on Filter, Wrapper and Embedded methods. We also apply some of the feature selection techniques on standard datasets to demonstrate the applicability of feature selection techniques.
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Allometric relationships are described for estimating leaf biomass, branch biomass, stem biomass and total above-ground biomass from measurements of stem diameter (DBH) in the mangrove species Rhizophora apiculata, R. stylosa, Bruguiera gymnorrhiza, B. parviflora, Ceriops tagal var. australis and Xylocarpus granatum. A linear relationship was found when the biomass of each above-ground component was plotted against DBH on a log-log scale. The two Rhizophora species were found to have the greatest stem and total above-ground biomass for a given DBH, followed by B. parviflora, B. gymnorrhiza, C. tagal var. australis, and X. granatum, the last having a significantly lower biomass for a given DBH than the other five species. However, there was much less variation in stem volume for a given DBH amongst the six species, owing to differences in the specific gravity of their stems.
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In this paper, a new methodology to estimate the biomass (organic matter) of conifer-dominated boreal forests is developed. It aims to estimate biomass of extensive areas where ground data are limited. First, the principal models are computed using ground measurements and high resolution satellite images. Spectral models are then applied directly to a calibrated AVHRR image mosaic covering the entire area of interest. This methodology was tested quantitatively in Finland, where detailed forest measurement data are available, on an area reaching from the west coast of Norway to the Ural mountains. The methodology appeared to perform beyond pre-test expectation.
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In this paper, a multiscale texture-based classifier for mapping tropical forest land cover types is discussed. The classifier was implemented using the Japanese Earth Remote Sensing Satellite (JERS-1) 100 m resolution radar data acquired over the Amazon Rainforest as part of the Global Rainforest Mapping (GRFM) Project. Demonstrated here is the use of the information content present in different texture measurements at different scales to separate three categories of land cover types: forest from nonforest, terre firme from floodplain vegetation, and grassland from woodland savanna. Various combinations of first-order image statistics known as texture measures were used at different scales as feature dimensions to aid the class discrimination. Eight of the most common first-order texture measures found in the literature were used. The best combination of texture measures at each scale were determined by employing a class separability test using the Bhattachuryya distance. The results were then used as input images into a supervised multiscale maximum likelihood estimation classifier. The classified maps were validated against independent test sites, and by comparison with a Landsat Thematic Mapper (TM) classification. It was found that JERS-1 backscatter and texture measures can discriminate forest from nonforest types with very high accuracy (above 90%). Old secondary forest or regrowth areas were often mixed with forest. Radar backscatter alone was able to separate terre firme and floodplain vegetation. However, texture measures were important in separating open from dense floodplain vegetation. Similarly, the backscatter sensitivity to low biomass values was instrumental in separating woodland from grassland savanna. Texture had a lesser role in separating these two vegetation types but was important to separate the woodland savanna from dense evergreen forest and secondary forests.
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Studies are needed to evaluate the ability of present or future SAR data to extract forest attributes over various sites. This study focuses on large unmanaged pine plantations in a vast flat area of ca. 500,000 ha where the tree biomass ranges from 0 to 200 m3/ha corresponding to different forest canopy structures. Results show a good correlation between the backscattering coefficient σ0 (with a 6-dB dynamic range and R2≥.8), the stand timber volume and the stand density. The trend is mainly driven by stand density and different relationships are observed according to age class, which explicitly points out the effects of canopy structure on the backscattering level. Stem volume is derived from the inversion of statistical and semiempirical models, which take these effects into account. Inversion results show that forest biomass attributes can be estimated with relatively small errors commensurate with those achieved by field measurements. Best overall accuracy of ca. 21 m3/ha is reached with the semiempirical model. Error decomposition as a function of age classes shows that, for the same biomass range, errors are higher for old stands than for young stands. Finally, the results indicate that (1) JERS-1 data can be used in an operational way for estimating the biomass of such plantations and (2) it is necessary to take forest stand structure into account. In order to develop reliable biomass-retrieval schemes, future research should focus on examining in a more mechanistic way the relationship between canopy structure and radar signature.
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A Modified Simple Ratio (MSR) Is proposed for retrieving biophysical parameters of boreal forests using remote sensing data. This vegetation index is formulated based on an evaluation of several two-band vegetation indices, including the Normalized Difference Vegetation Index (NDVI), Simple Ratio (SR), Soil Adjusted Vegetation Indices (SAVI, SAVI1, SAVI2), Weighted Difference Vegetation Index (WDVI), Global Environment Monitoring Index (GEMI), Non-Linear Index (NLI), and Renormalized Difference Vegetation Index (RDVI). MSR is an improved version of RDVI for the purpose of linearizing their relationships with biophysical parameters. All indices were obtained from Landsat-5 TM band 3 (visible) and band 4 (near infrared) images after atmospheric corrections (except for GEMI) and were correlated with ground-based measurements made in 20 Jack Pine (Pinus banksiana) and Black Spruce (Picea mariana) stands during the BOREAS field experiment in 1994. The measurements include Leaf Area Index (LAI) and the Fraction of Photosynthetically Active Radiation (FPAR) absorbed by the forest canopies. Among these vegetation indices, SR, MSR, and NDVI were found to be best correlated with LAI and FPAR in both spring and summer. All other indices performed poorly. Both NDVI and MSR can be expressed as a function of SR. Measurement errors in remote sensing data often occur due to changes in solar zenith angle, subpixel contamination of clouds, or dissimilar surface features and the variation in the local topography and other environmental factors. These errors generally cause simultaneous increases or decreases in the red and near infrared reflectances, and their effects can be greatly reduced by taking the ratio. All other indices involving mathematical operations other than ratioing could retain the errors or even amplify them. The major problem in using the vegetation indices obtained from red and near infrared bands is the small sensitivity to the overstorey vegetation conditions. Although many of the vegetation indices such as SAVI, SAVI1, and SAVI2 are developed to minimize the effect of the background on retrieving the vegetation information, they also reduce their sensitivity to the changes in the overstorey conditions.
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This paper reports on a test of the ability to estimate above-ground biomass of tropical secondary forest from canopy spectral reè ectance using satel- lite optical data. Landsat Thematic Mapper data were acquired concurrent with é eld surveys conducted in secondary forest fallows near Manaus, Brazil and Santa Cruz de la Sierra, Bolivia. Measurements of age and above-ground live biomass were made in 34 regrowth stands. Satellite data were converted to surface reè ectances and compared with regrowth stand age, biomass and structural variables. Among the Brazilian stands, signié cant relationships were observed between middle-infrared reè ectance and stand age, height, volume and biomass. The canopy reè ectance- biomass relationship saturated at around 15.0kgm Õ 2, or over 15 years of age ( r>0.80, p
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An experiment has been conducted in which narrow-band field reflectance spectra were acquired of a roofed pinyon pine canopy with Fee different gravel backgrounds. Leaf area teas successively removed as the measurements were repeated. From these reflectance spectra, narrow-band and broad-band (AVHRR, TM, MSS) red and near-infrared (NIR) vegetation index values were calculated. The performance of the vegetation indices was evaluated based on their capability to accurately estimate leaf area index (LAI) and percent green cover. Background effects were found for each of the tested vegetation indices. However the background effects are most pronounced in the normalized difference vegetation index (NDVI) and ratio vegetation index (RVI). Background effects can be reduced using either the perpendicular vegetation index (PVI) or soil adjusted vegetation index (SAVI) formulations. The narrow-band versions of these vegetation indices had only slightly better accuracy than their broad-band counterparts. The background effects were minimized using derivative based vegetation indices, which measure the amplitude of the chlorophyll red-edge using continuous narrow-band spectra from 626 nm to 795 nm.
Data
Data available from here: https://datadryad.org/stash/dataset/doi:10.5061/dryad.234
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Remotely sensed vegetation indices such as NDVI, computed using the red and near infrared bands have been used to estimate pasture biomass. These indices are of limited value since they saturate in dense vegetation. In this study, we evaluated the potential of narrow band vegetation indices for characterizing the biomass of Cenchrus ciliaris grass measured at high canopy density. Three indices were tested: Modified Normalized Difference Vegetation Index (MNDVI), Simple Ratio (SR) and Transformed Vegetation Index (TVI) involving all possible two band combinations between 350 nm and 2500 nm. In addition, we evaluated the potential of the red edge position in estimating biomass at full canopy cover. Results indicated that the standard NDVI involving a strong chlorophyll absorption band in the red region and a near infrared band performed poorly in estimating biomass (R2=0.26). The MNDVIs involving a combination of narrow bands in the shorter wavelengths of the red edge (700-750 nm) and longer wavelengths of the red edge (750-780 nm), yielded higher correlations with biomass (mean R2=0.77 for the highest 20 narrow band NDVIs). When the three vegetation indices were compared, SR yielded the highest correlation coefficients with biomass as compared to narrow band NDVI and TVI (average R2=0.80, 0.77 and 0.77 for the first 20 ranked SR, NDVI and TVI respectively). The red edge position yielded comparable results to the narrow band vegetation indices involving the red edge bands. These results indicate that at high canopy density, pasture biomass may be more accurately estimated by vegetation indices based on wavelengths located in the red edge than the standard NDVI.
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The biomass and biomass dynamics of forests are major uncertainties in our understanding of tropical environments. Remote sensing is often the only practical means of acquiring information on forest biomass but has not always been used successfully. Here the conventional approaches to the estimation of forest biomass from remotely sensed data were evaluated relative to techniques based on the application of artificial neural networks. Together these approaches were used to estimate and map the biomass of tropical forests in north-eastern Borneo from Landsat TM data. The neural networks were found to be particularly suited to the application. A basic multi-layer perceptron network, for example, provided estimates of biomass that were strongly correlated with those measured in the field (r = 0.80). Moreover, these estimates were more strongly correlated with biomass than those derived from 230 conventional vegetation indices, including the widely used normalized difference vegetation index (NDVI).
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Reflectance spectra in the visible and near infra-red range of the spectrum, acquired for maple (Acer platanoides L.), chestnut (Aesculus hippocastanum L.), potato (Solanum tuberosum L.), coleus (Coleus blumei Benth.), leaves and lemon (Citrus limon L.) and apple (Malus domestica Borkh.) fruits were studied. An increase of reflectance between 550 and 740 nm accompanied senescence-induced degradation of chlorophyll (Chl), whereas in the range 400–500 nm it remained low, due to retention of carotenoids (Car). It was found that both leaf senescence and fruit ripening affect the difference between reflectance (R) near 670 and 500 nm (R678−R500), depending on pigment composition. The plant senescing reflectance index in the form (R678−R500)/R750 was found to be sensitive to the Car/Chl ratio, and was used as a quantitative measure of leaf senescence and fruit ripening. The changes in the index were followed during leaf senescence, and natural and ethylene-induced fruit ripening. This novel index can be used for estimating the onset, the stage, relative rates and kinetics of senescence/ripening processes.
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Scanning Light Detecting and Ranging (LiDAR), Synthetic Aperture Radar (SAR) and Interferometric SAR (InSAR) were analyzed to determine (1) which of the three sensor systems most accurately predicted forest biomass, and (2) if LiDAR and SAR/InSAR data sets, jointly considered, produced more accurate, precise results relative to those same data sets considered separately. LiDAR ranging measurements, VHF–SAR cross-sectional returns, and X- and P-band cross-sectional returns and interferometric ranges were regressed with ground-estimated (from dbh) forest biomass in ponderosa pine forests in the southwestern United States. All models were cross-validated. Results indicated that the average canopy height measured by the scanning LiDAR produced the best predictive equation. The simple linear LiDAR equation explained 83% of the biomass variability (n = 52 plots) with a cross-validated root mean square error of 26.0 t/ha. Additional LiDAR metrics were not significant to the model. The GeoSAR P-band (λ = 86 cm) cross-sectional return and the GeoSAR/InSAR canopy height (X–P) captured 30% of the forest biomass variation with an average predictive error of 52.5 t/ha. A second RaDAR–FOPEN collected VHF (λ ∼ 7.8 m) and cross-polarized P-band (λ = 88 cm) cross-sectional returns, none of which proved useful for forest biomass estimation (cross-validated R2 = 0.09, RMSE = 63.7 t/ha). Joint consideration of LiDAR and RaDAR measurements produced a statistically significant, albeit small improvement in biomass estimation precision. The cross-validated R2 increased from 83% to 84% and the prediction error decreased from 26.0 t/ha to 24.9 t/ha when the GeoSAR X–P interferometric height is considered along with the average LiDAR canopy height. Inclusion of a third LiDAR metric, the 60th decile height, further increased the R2 to 85% and decreased the RMSE to 24.1 t/ha. On this 11 km2 ponderosa pine study area, LiDAR data proved most useful for predicting forest biomass. RaDAR ranging measurements did not improve the LiDAR estimates.
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This study was part of an interdisciplinary research project on soil carbon and phytomass dynamics of boreal and arctic permafrost landscapes. The 45 ha study area was a catchment located in the forest tundra in northern Siberia, approximately 100 km north of the Arctic Circle.The objective of this study was to estimate aboveground carbon (AGC) and assess and model its spatial variability. We combined multi-spectral high resolution remote sensing imagery and sample based field inventory data by means of the k-nearest neighbor (k-NN) technique and linear regression.Field data was collected by stratified systematic sampling in August 2006 with a total sample size of n = 31 circular nested sample plots of 154 m2 for trees and shrubs and 1 m2 for ground vegetation. Destructive biomass samples were taken on a sub-sample for fresh weight and moisture content. Species-specific allometric biomass models were constructed to predict dry biomass from diameter at breast height (dbh) for trees and from elliptic projection areas for shrubs.Quickbird data (standard imagery product), acquired shortly before the field campaign and archived ASTER data (Level-1B product) of 2001 were geo-referenced, converted to calibrated radiances at sensor and used as carrier data. Spectral information of the pixels which were located in the inventory plots were extracted and analyzed as reference set. Stepwise multiple linear regression was applied to identify suitable predictors from the set of variables of the original satellite bands, vegetation indices and texture metrics. To produce thematic carbon maps, carbon values were predicted for all pixels of the investigated satellite scenes. For this prediction, we compared the kNN distance-weighted classifier and multiple linear regression with respect to their predictions.The estimated mean value of aboveground carbon from stratified sampling in the field is 15.3 t/ha (standard error SE = 1.50 t/ha, SE% = 9.8%). Zonal prediction from the k-NN method for the Quickbird image as carrier is 14.7 t/ha with a root mean square error RMSE = 6.42 t/ha, RMSEr = 44%) resulting from leave-one-out cross-validation. The k-NN-approach allows mapping and analysis of the spatial variability of AGC. The results show high spatial variability with AGC predictions ranging from 4.3 t/ha to 28.8 t/ha, reflecting the highly heterogeneous conditions in those permafrost-influenced landscapes. The means and totals of linear regression and k-NN predictions revealed only small differences but some regional distinctions were recognized in the maps.
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In this study, a hybrid genetic algorithm is adopted to find a subset of features that are most relevant to the classification task. Two stages of optimization are involved. The outer optimization stage completes the global search for the best subset of features in a wrapper way, in which the mutual information between the predictive labels of a trained classifier and the true classes serves as the fitness function for the genetic algorithm. The inner optimization performs the local search in a filter manner, in which an improved estimation of the conditional mutual information acts as an independent measure for feature ranking taking account of not only the relevance of the candidate feature to the output classes but also the redundancy to the already-selected features. The inner and outer optimizations cooperate with each other and achieve the high global predictive accuracy as well as the high local search efficiency. Experimental results demonstrate both parsimonious feature selection and excellent classification accuracy of the method on a range of benchmark data sets.