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Current Research on Microbe — Plastic Interactions in the Marine Environment
... Unsurprisingly, these are the preferred materials when studying microbial colonisation and environmental pathogen occurrence, however, plastic weathering (i.e. polymer oxidation due to abiotic factors) is rarely considered in these studies despite its known influence on the plastisphere [8,48,75,153]. Most commonly, community analyses of the plastisphere are based on the taxonomic results of amplicon sequencing [153], and the potential for microbial pathogenicity is frequently assessed by qPCR [70,75]. ...
... polymer oxidation due to abiotic factors) is rarely considered in these studies despite its known influence on the plastisphere [8,48,75,153]. Most commonly, community analyses of the plastisphere are based on the taxonomic results of amplicon sequencing [153], and the potential for microbial pathogenicity is frequently assessed by qPCR [70,75]. These are both targeted molecular techniques that provide limited information on the microbial community complexity and do not allow investigation of the specific taxa harbouring ARGs or virulence determinants [22,75]. ...
... Most commonly, community analyses of the plastisphere are based on the taxonomic results of amplicon sequencing [153], and the potential for microbial pathogenicity is frequently assessed by qPCR [70,75]. These are both targeted molecular techniques that provide limited information on the microbial community complexity and do not allow investigation of the specific taxa harbouring ARGs or virulence determinants [22,75]. To date, few investigations have performed comprehensive metagenomic analyses on plastic samples recovered from marine environments [30,116,134,157] and even less from freshwater systems [154]. ...
Background
The widespread nature of plastic pollution has given rise to wide scientific and social concern regarding the capacity of these materials to serve as vectors for pathogenic bacteria and reservoirs for Antimicrobial Resistance Genes (ARG). In- and ex-situ incubations were used to characterise the riverine plastisphere taxonomically and functionally in order to determine whether antibiotics within the water influenced the ARG profiles in these microbiomes and how these compared to those on natural surfaces such as wood and their planktonic counterparts.
Results
We show that plastics support a taxonomically distinct microbiome containing potential pathogens and ARGs. While the plastisphere was similar to those biofilms that grew on wood, they were distinct from the surrounding water microbiome. Hence, whilst potential opportunistic pathogens (i.e. Pseudomonas aeruginosa, Acinetobacter and Aeromonas) and ARG subtypes (i.e. those that confer resistance to macrolides/lincosamides, rifamycin, sulfonamides, disinfecting agents and glycopeptides) were predominant in all surface-related microbiomes, especially on weathered plastics, a completely different set of potential pathogens (i.e. Escherichia, Salmonella, Klebsiella and Streptococcus) and ARGs (i.e. aminoglycosides, tetracycline, aminocoumarin, fluoroquinolones, nitroimidazole, oxazolidinone and fosfomycin) dominated in the planktonic compartment. Our genome-centric analysis allowed the assembly of 215 Metagenome Assembled Genomes (MAGs), linking ARGs and other virulence-related genes to their host. Interestingly, a MAG belonging to Escherichia –that clearly predominated in water– harboured more ARGs and virulence factors than any other MAG, emphasising the potential virulent nature of these pathogenic-related groups. Finally, ex-situ incubations using environmentally-relevant concentrations of antibiotics increased the prevalence of their corresponding ARGs, but different riverine compartments –including plastispheres– were affected differently by each antibiotic.
Conclusions
Our results provide insights into the capacity of the riverine plastisphere to harbour a distinct set of potentially pathogenic bacteria and function as a reservoir of ARGs. The environmental impact that plastics pose if they act as a reservoir for either pathogenic bacteria or ARGs is aggravated by the persistence of plastics in the environment due to their recalcitrance and buoyancy. Nevertheless, the high similarities with microbiomes growing on natural co-occurring materials and even more worrisome microbiome observed in the surrounding water highlights the urgent need to integrate the analysis of all environmental compartments when assessing risks and exposure to pathogens and ARGs in anthropogenically-impacted ecosystems.
1SQe33MjkWBo3cdx_C_SmDVideo Abstract
... The adsorption of antibiotics and heavy metals onto MP surfaces may lead to cross-resistance or coresistance in microbial communities [25]. Plastisphere assessments typically rely on amplicon sequencing for taxonomic data [26], whereas microbial pathogenicity evaluation involves qPCR [27,28]. Both methods provide limited insights into microbial complexity, lacking the precision to explore taxa hosting ARGs, MDRGs, BMRGs, MGEs, or virulence factors [28,29]. ...
... Plastisphere assessments typically rely on amplicon sequencing for taxonomic data [26], whereas microbial pathogenicity evaluation involves qPCR [27,28]. Both methods provide limited insights into microbial complexity, lacking the precision to explore taxa hosting ARGs, MDRGs, BMRGs, MGEs, or virulence factors [28,29]. To date, few studies have conducted thorough metagenomic analyses of plastic samples collected from marine [30][31][32][33] and freshwater environments [34][35][36]. ...
... Keywords Marine plastisphere, Microbial community function, Multi-omics, Comparative metaproteomics Background Persistent plastic pollution represents a novel niche within the marine environment, providing an attractive surface for biofilm formation by marine microorganisms in an otherwise pelagic realm [1]. In recent years, the marine 'plastisphere' has become an intensely studied habitat with hundreds of studies reporting on the diversity and composition of the microbiome colonizing plastic surfaces [2]. The plastisphere is regarded as a complex interactome between the plastic, eukaryotes, bacteria, and archaea, with communities that can be taxonomically highly diverse [3,4]. ...
... However, increasing the protein search database size can reduce the sensitivity of peptide spectrum matches [66], and is therefore not guaranteed to improve protein identification. Since many marine plastisphere lineages have only been studied using low-resolution taxonomic markers [2], improved genomic representation through future studies may facilitate protein identification using novel bioinformatic tools [66]. Our results demonstrating a range of active lineages using different protein search strategies indicate a concerted effort should be made to better characterize the metabolic potential, not just the taxonomy, of plastisphere lineages in the future. ...
Background
Microbial functioning on marine plastic surfaces has been poorly documented, especially within cold climates where temperature likely impacts microbial activity and the presence of hydrocarbonoclastic microorganisms. To date, only two studies have used metaproteomics to unravel microbial genotype–phenotype linkages in the marine ‘plastisphere’, and these have revealed the dominance of photosynthetic microorganisms within warm climates. Advancing the functional representation of the marine plastisphere is vital for the development of specific databases cataloging the functional diversity of the associated microorganisms and their peptide and protein sequences, to fuel biotechnological discoveries. Here, we provide a comprehensive assessment for plastisphere metaproteomics, using multi-omics and data mining on thin plastic biofilms to provide unique insights into plastisphere metabolism. Our robust experimental design assessed DNA/protein co-extraction and cell lysis strategies, proteomics workflows, and diverse protein search databases, to resolve the active plastisphere taxa and their expressed functions from an understudied cold environment.
Results
For the first time, we demonstrate the predominance and activity of hydrocarbonoclastic genera (Psychrobacter, Flavobacterium, Pseudomonas) within a primarily heterotrophic plastisphere. Correspondingly, oxidative phosphorylation, the citrate cycle, and carbohydrate metabolism were the dominant pathways expressed. Quorum sensing and toxin-associated proteins of Streptomyces were indicative of inter-community interactions. Stress response proteins expressed by Psychrobacter, Planococcus, and Pseudoalteromonas and proteins mediating xenobiotics degradation in Psychrobacter and Pseudoalteromonas suggested phenotypic adaptations to the toxic chemical microenvironment of the plastisphere. Interestingly, a targeted search strategy identified plastic biodegradation enzymes, including polyamidase, hydrolase, and depolymerase, expressed by rare taxa. The expression of virulence factors and mechanisms of antimicrobial resistance suggested pathogenic genera were active, despite representing a minor component of the plastisphere community.
Conclusion
Our study addresses a critical gap in understanding the functioning of the marine plastisphere, contributing new insights into the function and ecology of an emerging and important microbial niche. Our comprehensive multi-omics and comparative metaproteomics experimental design enhances biological interpretations to provide new perspectives on microorganisms of potential biotechnological significance beyond biodegradation and to improve the assessment of the risks associated with microorganisms colonizing marine plastic pollution.
EMsdtEfK7hXyizwjh4GBBGVideo Abstract
... Additionally, as the construction site is located by the coast, EPS was also seen in tide pools. This EPS was partially immersed in the water and, in appearance, colonised by microalgae and likely other microbial assemblages (Latva et al., 2023;Wright et al., 2020). Most notably, this accumulation of litter is a few meters away from recreational beaches and relatively close to a collection point for recyclable materials (Fig. S5A-B). ...
Plastic pollution is a critical environmental issue with far-reaching and not yet fully explored consequences. This study uncovered a significant source of plastic contamination arising from improper application and management of expanded polystyrene (EPS) utilised as expansion joints at a construction site near the coast of Anto-fagasta, Chile. Through meticulous field observations and calculations, we estimate that a staggering 82.9 million EPS spheres have the potential to be released into the environment from the 7.62 m 3 of this material used for the construction of this coastal promenade, constituting a chronic source of pollution. Despite the ongoing construction , we have already evidenced mechanical fragmentation and dispersion of EPS microplastic pollution in the surrounding natural environment. To our knowledge, this is the first study that documents misused construction materials contributing to plastic pollution. In addition to the EPS pollution, our findings reveal an alarming accumulation of litter-an acute pollution source-including plastic cups, bottles, carrier bags, and several other construction materials (e.g. plastic nets, films) that are exacerbating the pollution problems within the region and potentially endangering marine and terrestrial organisms. These observations highlight the urgent need for mitigating measures and intervention policies targeting construction-related plastic and microplastic pollution, along with a more robust regulatory framework for construction activities as well as adequate surveillance and enforcement.
... Electronic copy available at: https://ssrn.com/abstract=4489230 308 colonised by microalgae and likely other microbial assemblages (Latva et al., 2023; 309 Wright et al., 2020). Most notably, this accumulation of litter is meters away from 310 recreational beaches and relatively close to a collection point for recyclable materials 311 (Fig. S5A-B). ...
... For example, Basili and colleagues (Basili et al., 2020) determined that geographical location (i.e., sampling sites), not plastic-type, shapes plastisphere community structure when they characterised plastispheres of PP and PE collected from coasts of Italy. It was suggested that microbial communities across different substratum converge as biofilm matures, resulting in minimal differences in plastisphere community structures when compared across different plastic types (Amaral-Zettler et al., 2020;Latva et al., 2021;Wright et al., 2021b). This, therefore, highlights the limitations of field sampling: the inability to identify early plastisphere colonisers and to understand microbial succession on plastic debris as the origin and duration of exposure to the environment are unknown. ...
Approximately 9 Mt of plastics enters the ocean annually and once in the marine environment, plastic surfaces can be quickly colonised by marine microorganisms, forming a biofilm. Studies on plastic debris-biofilm associations, known as plastisphere, have increased exponentially within the last few years. In this review, we first briefly summarise methods and techniques used in exploring plastic-microbe interactions. Then we highlight research gaps and provide future research opportunities for marine plastisphere studies, especially, on plastic characterisation and standardised biodegradation tests, the fate of “environmentally friendly” plastics, and plastisphere of coastal habitats. Located in the tropics, Southeast Asian (SEA) countries are significant contributors to marine plastic debris. However, plastisphere studies in this region are lacking and therefore, we discuss how the unique environmental conditions in the Southeast Asian (SEA) seas may affect plastic-microbe interaction and why there is an imperative need to conduct plastisphere studies in SEA marine environments. Finally, we also highlight lack of understanding of the pathogenicity and ecotoxicological effects of plastisphere on marine ecosystems.
Coastal habitats have been suggested to serve as a sink for unaccounted plastic debris, i.e., "missing plastic" in the sea, and hence, a hotspot of plastic pollution in the marine and coastal environments. Although the accumulation of plastic debris may pose significant threats to coastal ecosystems, we know little about the fate of these plastic debris and their ecological impacts due to the lack of studies on plastic-microbe interactions in coastal habitats, especially for the tropical marine and coastal environments. In this study, we collected plastic debris from 14 sites consisting of various coastal ecosystems (seagrass meadows, mangrove forests, and beaches), and marine ecosystem (coral reef) around Singapore and characterized the prokaryotic and eukaryotic microbial communities colonized on them. Our results showed that the composition of plastisphere communities in these intertidal ecosystems was predominantly influenced by the sediment than by the plastic materials. Compared with surrounding sediment and seawater, the plastic debris enriched potential plastic degraders, such as Muricauda, Halomonas, and Brevundimonas. The plastic debris was also found to host taxa that play significant roles in biogeochemical cycles (e.g., cyanobacteria, Erythrobacter), hygienically relevant bacteria (e.g., Chryseobacterium, Brevundimonas), and potential pathogens that may negatively impact the health of coastal ecosystems (e.g., Thraustochytriaceae, Labyrinthulaceae, Flavobacterium). Taken together, our study provides valuable insights into the plastic-microbe interactions in tropical coastal and marine ecosystems, highlighting the urgent need for plastisphere studies to understand the fate and ecological impacts of plastic debris accumulated in coastal habitats.
Background
Microbial functioning on marine plastic surfaces has been poorly documented, with only two studies using metaproteomics to unravel microbial genotype-phenotype linkages in the marine ‘plastisphere’. Here we provide a comprehensive methodological assessment for plastisphere metaproteomics, using multi-omics and data mining on thin plastic biofilms from an understudied cold environment, to provide unique insights into plastisphere metabolism. Our robust experimental design assessed DNA/protein co-extraction and cell lysis strategies, proteomics workflows, and diverse protein search databases, to encourage the more widespread application of these techniques to resolve plastisphere function.
Results
For the first time, we demonstrate the predominance and activity of hydrocarbonoclastic genera (Psychrobacter, Flavobacterium, Pseudomonas) within a primarily heterotrophic plastisphere. Correspondingly, oxidative phosphorylation, the citrate cycle, and carbohydrate metabolism were the dominant pathways expressed. We also identified quorum sensing and toxin-associated proteins in Streptomyces, stress response proteins expressed by Psychrobacter, Planococcus and Pseudoalteromonas, and xenobiotics degradation proteins in Psychrobacter and Pseudoalteromonas. Interestingly, a targeted search strategy identified plastic biodegradation enzymes, such as polyamidase, hydrolase, and depolymerase, expressed by rare taxa. In contrast to previous research, pathogenic genera were active, expressing virulence factors and mechanisms of antimicrobial resistance.
Conclusion
Our study demonstrates the power of multi-omics and comparative metaproteomics to resolve plastisphere functioning, to provide new bioengineering perspectives and improved assessment of the risks of plastic pollution.
Background
The widespread nature of plastic pollution has given rise to wide scientific and social concern regarding the capacity of these materials to serve as vectors for pathogenic bacteria and reservoirs for Antimicrobial Resistance Genes (ARG). In- and ex-situ were used to characterise the riverine plastisphere taxonomically and functionally in order to determine whether antibiotics within the water influenced the ARG profiles in these microbiomes and how these compared to those on natural surfaces such as wood and their planktonic counterparts.
Results
We show that plastics support a taxonomically distinct microbiome containing potential pathogens and ARGs. While the plastisphere was similar to those biofilms that grew on wood, they were distinct from the surrounding water microbiome. Hence, whilst potential opportunistic pathogens (i.e. Pseudomonas aeruginosa, Acinetobacter and Aeromonas) and ARG subtypes (i.e. those that confer resistance to macrolides/lincosamides, rifamycin, sulfonamides, disinfecting agents and glycopeptides) were predominant in all surface-related microbiomes, especially on weathered plastics, a completely different set of potential pathogens (i.e. Escherichia, Salmonella, Klebsiella and Streptococcus) and ARGs (i.e. aminoglycosides, tetracycline, aminocoumarin, fluoroquinolones, nitroimidazole, oxazolidinone and fosfomycin) dominated in the planktonic compartment. Our genome-centric analysis allowed the assembly of 215 Metagenome Assembled Genomes (MAGs), linking ARGs and other virulence-related genes to their host. Interestingly, a MAG belonging to Escherichia –that clearly predominated in water– harboured more ARGs and virulence factors than any other MAG, emphasising the potential virulent nature of these pathogenic-related groups. Finally, ex-situ incubations using environmentally-relevant concentrations of antibiotics increased the prevalence of their corresponding ARGs, but different riverine compartments –including plastispheres– were affected differently by each antibiotic.
Conclusions
Our results provide insights into the capacity of the riverine plastisphere to harbour a distinct set of potentially pathogenic bacteria and function as a reservoir of ARGs. The environmental impact that plastics pose if they act as a reservoir for either pathogenic bacteria or ARGs is aggravated by the persistence of plastics in the environment due to their recalcitrance and buoyancy. Nevertheless, the high similarities with microbiomes growing on natural co-occurring materials and even more worrisome microbiome observed in the surrounding water highlights the urgent need to integrate the analysis of all environmental compartments when assessing risks and exposure to pathogens and ARGs in anthropogenically-impacted ecosystems.
Utilization of synthetic biology approaches to enhance current plastic degradation processes is of crucial importance, as natural plastic degradation processes are very slow. For instance, the predicted lifetime of a polyethylene terephthalate (PET) bottle under ambient conditions ranges from 16 to 48 years.
Background
Plastics now pollute marine environments across the globe. On entering these environments, plastics are rapidly colonised by a diverse community of microorganisms termed the plastisphere. Members of the plastisphere have a myriad of diverse functions typically found in any biofilm but, additionally, a number of marine plastisphere studies have claimed the presence of plastic-biodegrading organisms, although with little mechanistic verification. Here, we obtained a microbial community from marine plastic debris and analysed the community succession across 6 weeks of incubation with different polyethylene terephthalate (PET) products as the sole carbon source, and further characterised the mechanisms involved in PET degradation by two bacterial isolates from the plastisphere.
Results
We found that all communities differed significantly from the inoculum and were dominated by Gammaproteobacteria, i.e. Alteromonadaceae and Thalassospiraceae at early time points, Alcanivoraceae at later time points and Vibrionaceae throughout. The large number of encoded enzymes involved in PET degradation found in predicted metagenomes and the observation of polymer oxidation by FTIR analyses both suggested PET degradation was occurring. However, we were unable to detect intermediates of PET hydrolysis with metabolomic analyses, which may be attributed to their rapid depletion by the complex community. To further confirm the PET biodegrading potential within the plastisphere of marine plastic debris, we used a combined proteogenomic and metabolomic approach to characterise amorphous PET degradation by two novel marine isolates, Thioclava sp. BHET1 and Bacillus sp. BHET2. The identification of PET hydrolytic intermediates by metabolomics confirmed that both isolates were able to degrade PET. High-throughput proteomics revealed that whilst Thioclava sp. BHET1 used the degradation pathway identified in terrestrial environment counterparts, these were absent in Bacillus sp. BHET2, indicating that either the enzymes used by this bacterium share little homology with those characterised previously, or that this bacterium uses a novel pathway for PET degradation.
Conclusions
Overall, the results of our multi-OMIC characterisation of PET degradation provide a significant step forwards in our understanding of marine plastic degradation by bacterial isolates and communities and evidences the biodegrading potential extant in the plastisphere of marine plastic debris.
Microplastic debris ending up at the sea surface has become a known major environmental issue. However, how microplastic particles move and when they sink in the ocean remains largely unknown. Here, we model microplastic subject to biofouling (algal growth on a substrate) to estimate sinking timescales and the time to reach the depth where particles stop sinking. We combine NEMO‐MEDUSA 2.0 output, that represents hydrodynamic and biological properties of seawater, with a particle‐tracking framework. Different sizes and densities of particles (for different types of plastic) are simulated, showing that the global distribution of sinking timescales is largely size‐dependent as opposed to density‐dependent. The smallest particles we simulate (0.1 μm) start sinking almost immediately around the globe and their trajectories take the longest time to reach their first sinking depth (relative to larger particles). In oligotrophic subtropical gyres with low algal concentrations, particles between 1 and 0.01 mm do not sink within the simulation time of 90 days. This suggests that in addition to the comparatively well‐known physical processes, biological processes might also contribute to the accumulation of floating plastic (of 1–0.01 mm) in subtropical gyres. Particles of 1 μm in the gyres start sinking largely due to vertical advection, whereas in the equatorial Pacific they are more dependent on biofouling. The qualitative impacts of seasonality on sinking timescales are small, however, localized sooner sinking due to spring algal blooms is seen. This study maps processes that affect the sinking of virtual microplastic globally, which could ultimately impact the ocean plastic budget.
Microplastic contamination has been linked to a range of impacts on aquatic environments. One important area that is only beginning to be addressed is the effect of microplastics on marine carbon cycling and how these compare to the effects related to inorganic particles typically present in ocean waters. The present study explores these impacts on dissolved organic matter dynamics by comparing three scenarios: a particle-free environment, a particle-enriched system with polystyrene microplastics, and a particle-enriched system with inorganic particles (water insoluble SiO2). Natural marine organic matter was obtained by culturing a non-axenic strain of Chaetoceros socialis in 2L flasks under each of three scenarios. Following the diatom growth phase, filtered samples from the three flasks containing dissolved organic matter and bacteria were incubated separately in the dark for 5 days to monitor changes in dissolved organic matter. Chromophoric dissolved organic matter (CDOM), a bulk optical property, was monitored daily to examine changes in its quality and quantity and to compare degradation dynamics in the three systems. CDOM absorbance (quantity) remained higher in the control with respect to particle-enriched systems, suggesting that the presence of particles led to different rates of CDOM production and degradation. Using indicators for CDOM that could be related to microbial activity, results showed a higher CDOM alteration in the particle-enriched systems. These results indicate that microplastics have a potential role in modifying marine organic matter dynamics, on a similar magnitude to that of biogenic inorganic particles. Given their increasing concentrations of marine ecosystems, their role in marine microbial processing of organic matter needs to be better understood.
The number of plastic-degrading microorganisms reported is rapidly increasing, making it possible to explore the conservation and distribution of presumed plastic-degrading traits across the diverse microbial tree of life. Putative degraders of conventional high-molecular-weight polymers, including polyamide, polystyrene, polyvinylchloride, and polypropylene, are spread widely across bacterial and fungal branches of the tree of life, although evidence for plastic degradation by a majority of these taxa appears limited. In contrast, we found strong degradation evidence for the synthetic polymer polylactic acid (PLA), and the microbial species related to its degradation are phylogenetically conserved among the bacterial family Pseudonocardiaceae. We collated data on genes and enzymes related to the degradation of all types of plastic to identify 16,170 putative plastic degradation orthologs by mining publicly available microbial genomes. The plastic with the largest number of putative orthologs, 10,969, was the natural polymer polyhydroxybutyrate (PHB), followed by the synthetic polymers polyethylene terephthalate (PET) and polycaprolactone (PCL), with 8,233 and 6,809 orthologs, respectively. These orthologous genes were discovered in the genomes of 6,000 microbial species, and most of them are as yet not identified as plastic degraders. Furthermore, all these species belong to 12 different microbial phyla, of which just 7 phyla have reported degraders to date. We have centralized information on reported plastic-degrading microorganisms within an interactive and updatable phylogenetic tree and database to confirm the global and phylogenetic diversity of putative plastic-degrading taxa and provide new insights into the evolution of microbial plastic-degrading capabilities and avenues for future discovery.
IMPORTANCE
We have collated the most complete database of microorganisms identified as being capable of degrading plastics to date. These data allow us to explore the phylogenetic distribution of these organisms and their enzymes, showing that traits for plastic degradation are predominantly not phylogenetically conserved. We found 16,170 putative plastic degradation orthologs in the genomes of 12 different phyla, which suggests a vast potential for the exploration of these traits in other taxa. Besides making the database available to the scientific community, we also created an interactive phylogenetic tree that can display all of the collated information, facilitating visualization and exploration of the data. Both the database and the tree are regularly updated to keep up with new scientific reports. We expect that our work will contribute to the field by increasing the understanding of the genetic diversity and evolution of microbial plastic-degrading traits.
Polymers shape human life but they also have been identified as pollutants in the oceans due to their long lifetime and low degradability. Recently, various researchers have studied the impact of (micro)plastics on marine life, biodiversity, and potential toxicity. Even if the consequences are still heavily discussed, prevention of unnecessary waste is desired. Especially, newly designed polymers that degrade in seawater are discussed as potential alternatives to commodity polymers in certain applications. Biodegradable polymers that degrade in vivo (used for biomedical applications) or during composting often exhibit too slow degradation rates in seawater. To date, no comprehensive summary for the degradation performance of polymers in seawater has been reported, nor are the studies for seawater‐degradation following uniform standards. This review summarizes concepts, mechanisms, and other factors affecting the degradation process in seawater of several biodegradable polymers or polymer blends. As most of such materials cannot degrade or degrade too slowly, strategies and innovative routes for the preparation of seawater‐degradable polymers with rapid degradation in natural environments are reviewed. It is believed that this selection will help to further understand and drive the development of seawater‐degradable polymers.
Drifted plastics (or so-called neustoplastics) is considered to be colonized by marine organisms that could use the polymers as a substrate, participate in their decomposition, and form unusual biological communities that adapt to severe conditions of the environment in the near-surface layer of water. In this study, we initiated the research of microphytes that may dwell on the plastics on the water surface in the northern part of the Black Sea coastal waters. Two types of neustoplastics were analyzed: polyethylene film (PE-film) with microphytes fouling that was occasionally sampled and polyethylene terephthalate bottle (PET-bottle) that has been exposed to fouling for about six weeks. The microphytes forming fouling on PE-film was represented with 14 taxa of cyanobacteria and 8 species of Bacillariophyta. The most numerous genera were Сalothrix and Mastogloia. Strict hierarchy of the assemblage was noticed, the first layer of microalgae that was located directly on the surface of the PE-film was presented mostly by Mastogloia species that formed capsules (the most abundant M. lanceolata) and three species of Calothrix with short trichomes. C. scopulorum and C. рarietina formed upper layer of the assemblage protecting the microphytes from the aggressive environment. On the surface of PET-bottle assemblage was formed by mosaic scattered spots with different spatial organization. The upper layer was again formed by cyanobacteria Leptolyngbya foveolarum and colonies of the diatom Neosynedra provincialis. Other 10 species of diatoms, 1 dinoflagellate and 7 cyanobacteria were presented in the assemblage. The architecture of both studied assemblages represented the existence of specific adaptations of microphytes that dwell on polymer substrates near the water surface. The assemblage on the PET-bottle was more diverse and with more complicated hierarchical structure.
Plastics entering the environment can not only undergo physical degradation and fragmentation processes, but they also tend to be colonized by microorganisms. Microbial colonization and the subsequent biofilm formation on plastics can alter their palatability to organisms and result in a higher ingestion as compared to pristine plastics. To date, the early stage of biofilm formation on plastic materials has not been investigated in context of the environmental medium and polymer properties. We explored the early-stage biofilm formation on polyamide (PA), polyethylene terephthalate (PET), and polyvinyl chloride (PVC) after incubation in freshwater and artificial seawater and categorized the structural diversity on images obtained via scanning electron microscopy. Furthermore, by the measurement of the initial ζ-potential of the plastic materials, we found that PA with the highest negative ζ-potential tended to have the highest structural diversity, followed by PET and PVC after incubation in freshwater. However, PVC with the lowest negative ζ-potential showed the highest structural diversity after incubation in seawater, indicating that the structural diversity is additionally dependent on the incubation medium. Our results give insights into how the incubation medium and polymer properties can influence the early-stage biofilm formation of just recently environmentally exposed microplastics. These differences are responsible for whether organisms may ingest microplastic particles with their food or not.
Resistant to degradation, plastic litter poses a long-term threat to marine ecosystems. Biodegradable materials have been developed to replace conventional plastics, but little is known of their impacts and degradation in marine environments. A 14-week laboratory experiment was conducted to investigate the sorption of polycyclic aromatic hydrocarbons (PAHs) to conventional (polystyrene PS and polyamide PA) and bio-based, biodegradable plastic films (cellulose acetate CA and poly-L-lactic acid PLLA), and to examine the composition of bacterial communities colonizing these materials. Mesoplastics (1 cm2) of these materials were incubated in sediment and seawater collected from two sites in the Gulf of Finland, on the coast of the highly urbanized area of Helsinki, Finland. PS sorbed more PAHs than did the other plastic types at both sites, and the concentration of PAHs was consistently and considerably smaller in plastics than in the sediment. In general, the plastic bacterial biofilms resembled those in the surrounding media (water and/or sediment). However, in the sediment incubations, the community composition on CA diverged from that of the other three plastic types and was enriched with Bacteroidia and potentially cellulolytic Spirochaetia at both sites. The results indicate that certain biodegradable plastics, such as CA, may harbour potential bioplastic-degrading communities and that PAH sorption capacity varies between polymer types. Since biodegradable plastics are presented as replacements for conventional plastics in applications with risk of ending up in the marine environment, the results highlight the need to carefully examine the environmental behaviour of each biodegradable plastic type before they are extensively introduced to the market.
The current research explored the potential of microalgal species Chlorella vulgaris and Pretreatment to remediate plastic waste. It was concluded from the results that Pretreatment had a marked effect on the cracking and alteration of plastic polymer, which helped to grow microbial species on the cracked surface as evident by Compound Microscopy (CM), Scanning Electron Microscopy (SEM), and Fourier Transformed Infrared Spectroscopy (FTIR) analysis. FTIR data also supported the notion that in the absence of any pretreatment, the microbial species were not able to mediate plastic biodegradation efficiently as the nature of functional groups was different in the presence and absence of Pretreatment. GCMS analysis revealed that the microbial specie could produce the biodegradation products which were likely to be found in the structure of PET, including alkanes ester, fatty acids, benzoic acid, and aromatics and the most toxic product of biodegradation is Bis (2-Ethyl hexyl phthalate), which is the biodegradation product of toxic ingredient of plastics that is phthalic acid.
In this study we used scanning electron microscopy to characterize microbial biofilm communities on the surface of plastics commonly used in daily life and fisheries, namely polyethylene (PE), polypropylene (PP), polyethylene terephthalate (PET), polystyrene (PS), polyamide (PA, nylon) and polyvinylchloride (PVC). For this purpose, we submerged the plastic items in a coastal station in the southeastern Black Sea during five months (February-June 2019) and recorded the evolution of microbial biofilm formation. Diverse microbial communities formed on plastics surface within a month. Diatoms were the most diverse and abundant group of the plastic colonizers represented by 18 genera. Bacteria were also abundant and a diverse group on plastic surface. Dinoflagellates, ciliates, choanoflagellates, auxospores and unidentified organism were also observed. After microbial formation we also observed invertebrate assemblages on plastic. Our experimental results confirm the current concern that plastic is a new pelagic substrate for microorganisms and invertebrates in the Black Sea and that these communities may play an important role in plastic degradation and represent a novel compartment of the ecosystem.
Marine plastic pollution is a well-recognized, global problem. Research addressing plastic pollution has largely focused on investigating impacts on macroorganisms, with few studies investigating effects on marine microbes. We previously showed that marine Prochlorococcus, which are important contributors to oceanic primary production, suffer declines in growth and photosynthetic activity following exposure to leachates from new plastic bags (HDPE) and plastic matting (PVC). However, as such plastics reside in the environment they will be subject to weathering processes, so it is also important to consider how these may alter the composition and amounts of substances available to leach. Here we report on how plastic leachate toxicity is affected by environmental weathering (17- and 112-days in estuarine water) of these common plastic materials. We found that while toxicity was reduced by weathering, materials weathered for up to 112-days continued to leach substances that negatively affected Prochlorococcus growth, photophysiology and membrane integrity. Weathered plastics were found to continue to leach zinc, even after up to 112-days in the environment. The two Prochlorococcus strains tested, NATL2A and MIT9312, showed differences in the sensitivity and timing of their responses, indicating that exposure to leachate from weathered plastics may affect even closely related strains to different degrees. As many marine regions inhabited by Prochlorococcus are likely to be subject to continued accumulation of plastic pollution, our findings highlight the potential for ongoing impacts on these important primary producers.
It is now indisputable that plastics are ubiquitous and problematic in ecosystems globally. Many suggestions have been made about the role that biofilms colonizing plastics in the environment—termed the “Plastisphere”—may play in the transportation and ecological impact of these plastics. By collecting and re-analyzing all raw 16S rRNA gene sequencing and metadata from 2229 samples within 35 studies, we have performed the first meta-analysis of the Plastisphere in marine, freshwater, other aquatic (e.g., brackish or aquaculture) and terrestrial environments. We show that random forest models can be trained to differentiate between groupings of environmental factors as well as aspects of study design, but—crucially—also between plastics when compared with control biofilms and between different plastic types and community successional stages. Our meta-analysis confirms that potentially biodegrading Plastisphere members, the hydrocarbono16 clastic Oceanospirillales and Alteromonadales are consistently more abundant in plastic than control biofilm samples across multiple studies and environments. This indicates the predilection of these organisms for plastics and confirms the urgent need for their ability to biodegrade plastics to be comprehensively tested. We also identified key knowledge gaps that should be addressed by future studies.
Plastic debris in the ocean form a new ecosystem, termed ‘plastisphere’, which hosts a variety of marine organisms. Recent studies implemented DNA metabarcoding to characterize the taxonomic composition of the plastisphere in different areas of the world. In this study, we used a modified metabarcoding approach which was based on longer barcode sequences for the characterization of the plastisphere biota. We compared the microbiome of polyethylene food bags after 1 month at sea to the free-living biome in two proximal but environmentally different locations on the Mediterranean coast of Israel. We targeted the full 1.5 kb-long 16S rRNA gene for bacteria and 0.4–0.8 kb-long regions within the 18S rRNA, ITS, tufA and COI loci for eukaryotes. The taxonomic barcodes were sequenced using Oxford Nanopore Technology with multiplexing on a single MinION flow cell. We identified between 1249 and 2141 species in each of the plastic samples, of which 61 species (34 bacteria and 27 eukaryotes) were categorized as plastic-specific, including species that belong to known hydrocarbon-degrading genera. In addition to a large prokaryotes repertoire, our results, supported by scanning electron microscopy, depict a surprisingly high biodiversity of eukaryotes within the plastisphere with a dominant presence of diatoms as well as other protists, algae and fungi.
Bacteria can be harmless commensals, beneficial probiotics, or harmful pathogens. Therefore, mankind is challenged to detect and identify bacteria in order to prevent or treat bacterial infections. Examples are identification of species for treatment of infection in clinics and E. coli cell counting for water quality monitoring. Finally, in some instances, the pathogenicity of a species is of interest. The main strategies to investigate pathogenicity are detection of target genes which encode virulence factors. Another strategy could be based on phenotypic identification. Raman spectroscopy is a promising phenotypic method, which offers high sensitivities and specificities for the identification of bacteria species. In this study, we evaluated whether Raman microspectroscopy could be used to determine the pathogenicity of E. coli strains. We used Raman spectra of seven non-pathogenic and seven pathogenic E. coli strains to train a PCA-SVM model. Then, the obtained model was tested by identifying the pathogenicity of three additional E. coli strains. The pathogenicity of these three strains could be correctly identified with a mean sensitivity of 77%, which is suitable for a fast screening of pathogenicity of single bacterial cells.
Graphical abstract
A mess of plastic
It is not clear what strategies will be most effective in mitigating harm from the global problem of plastic pollution. Borrelle et al. and Lau et al. discuss possible solutions and their impacts. Both groups found that substantial reductions in plastic-waste generation can be made in the coming decades with immediate, concerted, and vigorous action, but even in the best case scenario, huge quantities of plastic will still accumulate in the environment.
Science , this issue p. 1515 , p. 1455
It remains unknown whether and to what extent marine prokaryotic communities are capable of degrading plastic in the ocean. To address this knowledge gap, we combined enrichment experiments employing low-density polyethylene (LDPE) as the sole carbon source with a comparison of bacterial communities on plastic debris in the Pacific, the North Atlantic and the northern Adriatic Sea. A total of 35 OTUs were enriched in the LDPE-laboratory incubations after one year, of which 20 were present with relative abundances > 0.5% in at least one plastic sample collected from the environment. From these, OTUs classified as Cognatiyoonia, Psychrobacter, Roseovarius, and Roseobacter were found in the communities of plastics collected at all oceanic sites. Additionally, OTUs classified as Roseobacter, Pseudophaeobacter, Phaeobacter, Marinovum and Cognatiyoonia, also enriched in the LDPE-laboratory incubations, were enriched on LDPE communities compared to the ones associated to glass and polypropylene in in situ incubations in the northern Adriatic Sea after one month of incubation. Some of these enriched OTUs were also related to known alkane and hydrocarbon degraders. Collectively, these results demonstrate that there are prokaryotes capable of surviving with LDPE as the sole carbon source living on plastics in relatively high abundances in different water masses of the global ocean. This article is protected by copyright. All rights reserved.
Plastics become rapidly colonized by microbes when released into marine environments. This microbial community - the Plastisphere - has recently sparked a multitude of scientific enquiries and generated a breadth of knowledge, which we bring together in this review. Besides providing a better understanding of community composition and biofilm development in marine ecosystems, we critically discuss current research on plastic biodegradation and the identification of potentially pathogenic "hitchhikers" in the Plastisphere. The Plastisphere is at the interface between the plastic and its surrounding milieu, and thus drives every interaction that this synthetic material has with its environment, from ecotoxicity and new links in marine food webs to the fate of the plastics in the water column. We conclude that research so far has not shown Plastisphere communities to starkly differ from microbial communities on other inert surfaces, which is particularly true for mature biofilm assemblages. Furthermore, despite progress that has been made in this field, we recognize that it is time to take research on plastic-Plastisphere-environment interactions a step further by identifying present gaps in our knowledge and offering our perspective on key aspects to be addressed by future studies: (I) better physical characterization of marine biofilms, (II) inclusion of relevant controls, (III) study of different successional stages, (IV) use of environmentally relevant concentrations of biofouled microplastics, and (V) prioritization of gaining a mechanistic and functional understanding of Plastisphere communities.
Since plastics degrade very slowly, they remain in the environment on much longer timescales than most natural organic substrates and provide a novel habitat for colonization by bacterial communities. The spectrum of relationships between plastics and bacteria, however, is little understood. The first objective of this study was to examine plastics as substrates for communities of Bacteria in estuarine surface waters. We used next-generation sequencing of the 16S rRNA gene to characterize communities from plastics collected in the field, and over the course of two colonization experiments, from biofilms that developed on plastic (low-density polyethylene, high-density polyethylene, polypropylene, polycarbonate, polystyrene) and glass substrates placed in the environment. Both field sampling and colonization experiments were conducted in estuarine tributaries of the lower Chesapeake Bay. As a second objective, we concomitantly analyzed biofilms on plastic substrates to ascertain the presence and abundance of Vibrio spp. bacteria, then isolated three human pathogens, V. cholerae, V. parahaemolyticus, and V. vulnificus, and determined their antibiotic-resistant profiles. In both components of this study, we compared our results with analyses conducted on paired samples of estuarine water. This research adds to a nascent literature that suggests environmental factors govern the development of bacterial communities on plastics, more so than the characteristics of the plastic substrates themselves. In addition, this study is the first to culture three pathogenic vibrios from plastics in estuaries, reinforcing and expanding upon earlier reports of plastic pollution as a habitat for Vibrio species. The antibiotic resistance detected among the isolates, coupled with the longevity of plastics in the aqueous environment, suggests biofilms on plastics have potential to persist and serve as focal points of potential pathogens and horizontal gene transfer.
As plastic debris in the environment continues to increase, an emerging concern
is the potential for microplastic to act as vectors for pathogen transport. With
aquaculture the fastest growing food sector, and microplastic contamination of
shellfish increasingly demonstrated, understanding any risk of pathogen transport
associated with microplastic is important for this industry. However, there
remains a lack of detailed, systematic studies assessing the interactions and
potential impacts that the attachment of human and animal pathogens on
microplastic may have. Here we synthesise current knowledge regarding these
distinct microplastic-associated bacterial communities and microplastic uptake
pathways into bivalves, and discuss whether they represent a human and animal
health threat, highlighting the outstanding questions critical to our understanding
of this potential risk to food safety.
We studied the fragmentation of conventional thermoplastic and compostable plastic items in a laboratory seawater microcosm. In the microcosm, polyurethane foams, cellulose acetate cigarette filters, and compostable polyester and polylactic acid items readily sank, whereas polyethylene air pouches, latex balloons, polystyrene foams and polypropylene cups remained afloat. Microbial biofilms dominated by Cyanobacteria, Proteobacteria, Planctomycetes and Bacteriodetes grew on the plastics, and caused some of the polyethylene items to sink to the bottom. Electrical resistances (ER) of plastic items decreased as function of time, an indication that seawater had penetrated into microscopic crevices in the plastic that had developed over time. Rate constants for ER decrease in polyethylene items in the microcosm were similar to tensile elongation decrease of polyethylene sheets floating in sea, measured previously by others. Weight loss of plastic items was ≤ 1% per year for polyethylene, polystyrene and polypropylene, 3–5% for latex, polyethylene terephthalate and polyurethane, 15% for cellulose acetate, and 7–27% for polyester and polylactic acid compostable bags. The formation of microplastics observed in the microcosm was responsible for at least part of the weight loss. This study emphasizes the need to obtain experimental data on plastic litter degradation under conditions that are realistic for marine environments.
Microplastics or plastic particles less than 5 mm in size are a ubiquitous and damaging pollutant in the marine environment. However, the interactions between these plastic particles and marine microorganisms are just starting to be understood. The objective of this study was to measure the responses of a characteristic marine organism (Synechococcus sp. PCC 7002) to an anthropogenic stressor (polyethelene nanoparticles and microparticles) using molecular techniques. This investigation showed that polyethylene microparticles and nanoparticles have genetic, enzymatic and morphological effects on Synechococcus sp. PCC 7002. An RT-PCR analysis showed increases in the expression of esterase and hydrolase genes at 5 days of exposure to polyethylene nanoparticles and at 10 days of exposure to polyethylene microparticles. A qualitative enzymatic assay also showed esterase activity in nanoparticle exposed samples. Cryo-scanning electron microscopy was used to assess morphological changes in exopolymer formation resulting from exposure to polyethylene microparticles and nanoparticles. The data from this paper suggests that microplastic and nanoplastics could be key microbial stressors and should be investigated in further detail.
The fate of plastic debris entering the oceans is largely unconstrained. Currently, intensified research is devoted to the abiotic and microbial degradation of plastic floating near the ocean surface for an extended period of time. In contrast, the impacts of environmental conditions in the deep sea on polymer properties and rigidity are virtually unknown. Here, we present unique results of plastic items identified to have been introduced into deep-sea sediments at a water depth of 4150 m in the eastern equatorial Pacific Ocean more than two decades ago. The results, including optical, spectroscopic, physical and microbial analyses, clearly demonstrate that the bulk polymer materials show no apparent sign of physical or chemical degradation. Solely the polymer surface layers showed reduced hydrophobicity, presumably caused by microbial colonization. The bacterial community present on the plastic items differed significantly (p < 0.1%) from those of the adjacent natural environment by a dominant presence of groups requiring steep redox gradients (Mesorhizobium, Sulfurimonas) and a remarkable decrease in diversity. The establishment of chemical gradients across the polymer surfaces presumably caused these conditions. Our findings suggest that plastic is stable over extended times under deep-sea conditions and that prolonged deposition of polymer items at the seafloor may induce local oxygen depletion at the sediment-water interface.
Being immersed in seawater for a few days, microorganisms will adhere to the surface of different materials and form biofilms. After being immersed in seawater for 1 week, high-throughput sequencing method was used to analyze the bacterial community structure of the biofilms on the surface of microbeads with different materials including steel, SiO2, and polyvinyl chloride (PVC). Operational taxonomic unit clustering results showed that some differences existed in the bacterial communities attached to the surface of different microbeads. Each microbead made by different material had its unique bacterial community. The heatmap indicated that the dominant genera on the surface of different microbeads were different from each other. Quantitative analysis showed that the relative abundance of dominant genera were different among different types of microbeads. Beta diversity analysis and principal component analysis showed that difference in the bacterial community on surface of steel-bead and PVC-bead was the most significant.
Knowledge of biofilm formation on pollutants in the marine realm is expanding, but how communities respond to substrates during colonization remains poorly understood. Here, we assess community assembly and respiration in response to two different micropollutants, virgin high‐density polyethylene (HDPE) microbeads and textile fibers under different light settings. Raman characterization, high‐throughput DNA sequencing data, quantitative PCR, and respiration measurements reveal how a stimulation of aerobic respiration by micropollutants is translated into selection for significantly different communities colonizing the substrates. Despite the lack of evidence for biodegradation of HDPE, an increased abundance and respiration of bacterial taxa closely related to hydrocarbonoclastic Kordiimonas spp. and Alteromonas spp. in the presence of textile waste highlights their biodegradation potential. Incubations with textile fibers exhibited significantly higher respiration rates in the presence of light, which could be partially explained by photochemical dissolution of the textile waste into smaller bioavailable compounds. Our results suggest that the development and increased respiration of these unique microbial communities may potentially play a role in the bioremediation of the relatively long‐lived textile pollutants in marine habitats, and that the respiration of heterotrophic hydrocarbon‐degrading bacteria colonizing marine pollutants can be stimulated by light. This article is protected by copyright. All rights reserved.
Microplastics are ubiquitous in estuarine, coastal, and deep sea sediments. The impacts of microplastics on sedimentary microbial ecosystems and biogeochemical carbon and nitrogen cycles, however, have not been well reported. To evaluate if microplastics influence the composition and function of sedimentary microbial communities, we conducted a microcosm experiment using salt marsh sediment amended with polyethylene (PE), polyvinyl chloride (PVC), polyurethane foam (PUF) or polylactic acid (PLA) microplastics. We report that the presence of microplastics alters sediment microbial community composition and nitrogen cycling processes. Compared to control sediments without microplastic, PUF- and PLA-amended sediments promote nitrification and denitrification, while PVC amendment inhibits both processes. These results indicate that nitrogen cycling processes in sediments can be significantly affected by different microplastics, which may serve as organic carbon substrates for microbial communities. Considering this evidence and increasing microplastic pollution, the impact of plastics on global ecosystems and biogeochemical cycling merits critical investigation. Plastic pollution has infiltrated every ecosystem, but few studies have quantified the biogeochemical or ecological effects of plastic. Here the authors show that microplastics in ocean sediment can significantly alter microbial community structure and nitrogen cycling.
Plastic debris in aquatic environments is colonized by microbes, yet factors influencing biofilm development and composition on plastics remain poorly understood. Here, we explored the microbial assemblages associated with different types of plastic debris collected from two coastal sites in the Mediterranean Sea. All plastic samples were heavily colonized by prokaryotes, with abundances up to 1.9 × 10⁷ cells/cm². Microbial assemblages on plastics significantly differed between the two geographic areas but not between polymer types, suggesting a major role of the environment as source for the plastisphere composition. Nevertheless, plastic communities differed from those in the surrounding seawater and sediments, indicating a further selection of microbial taxa on the plastic substrates. The presence of potential pathogens on the plastic surface reflected the levels of microbial pollution in the surrounding environment, regardless of the polymer type, and confirmed the role of plastics as carriers for pathogenic microorganisms across the coastal ocean, deserving further investigations.
The infamous garbage patches on the surface of subtropical oceanic gyres are proof that plastic is polluting the ocean on an unprecedented scale. The fate of floating plastic debris ‘trapped’ in these gyres, however, remains largely unknown. Here, we provide the first evidence for the vertical transfer of plastic debris from the North Pacific Garbage Patch (NPGP) into the underlying deep sea. The numerical and mass concentrations of plastic fragments (500 µm to 5 cm in size) suspended in the water column below the NPGP follow a power law decline with water depth, reaching values <0.001 pieces/m3 and <0.1 µg/m3 in the deep sea. The plastic particles in the NPGP water column are mostly in the size range of particles that are apparently missing from the ocean surface and the polymer composition of plastic in the NPGP water column is similar to that of floating debris circulating in its surface waters (i.e. dominated by polyethylene and polypropylene). Our results further reveal a positive correlation between the amount of plastic debris at the sea surface and the depth-integrated concentrations of plastic fragments in the water column. We therefore conclude that the presence of plastics in the water column below the NPGP is the result of ‘fallout’ of small plastic fragments from its surface waters.
The contamination of marine and freshwater ecosystems with the items from thermoplastics, including polystyrene (PS), necessitates the search for efficient microbial degraders of these polymers. In the present study, the composition of prokaryotes in biofilms formed on PS samples incubated in seawater and the industrial water of a petrochemical plant were investigated. Using a high-throughput sequencing of the V3–V4 region of the 16S rRNA gene, the predominance of Alphaproteobacteria (Blastomonas), Bacteroidetes (Chryseolinea), and Gammaproteobacteria (Arenimonas and Pseudomonas) in the biofilms on PS samples exposed to industrial water was revealed. Alphaproteobacteria (Erythrobacter) predominated on seawater-incubated PS samples. The local degradation of the PS samples was confirmed by scanning microscopy. The PS-colonizing microbial communities in industrial water differed significantly from the PS communities in seawater. Both communities have a high potential ability to carry out the carbohydrates and amino acids metabolism, but the potential for xenobiotic degradation, including styrene degradation, was relatively higher in the biofilms in industrial water. Bacteria of the genera Erythrobacter, Maribacter, and Mycobacterium were potential styrene-degraders in seawater, and Pseudomonas and Arenimonas in industrial water. Our results suggest that marine and industrial waters contain microbial populations potentially capable of degrading PS, and these populations may be used for the isolation of efficient PS degraders.
High concentrations of microplastics have been found in sea ice but the mechanisms by which they get captured into the ice and which role ice algae might play in this process remain unknown. Similarly, we do not know how the presence of microplastics might impact the colonization of sea ice by ice algae. To estimate the ecological impact of microplastics for Polar ecosystems, it is essential to understand their behaviour during ice formation and possible interactions with organisms inhabiting sea ice.
In this study we tested the interaction between the ice algae Fragillariopsis cylindrus and microplastic beads with and without sea ice present and, in a third experiment, during the process of ice formation. With sea ice present, we found significantly less algae cells in the ice when incubated together with microplastics compared to the incubation without microplastics. However, during ice formation, the presence of microplastics did not impact the colonisation of the ice by F. cylindrus cells. Further, we observed a strong correlation between salinity and the relative amount of beads in the water and ice. With increasing salinity of the water, the relative amount of beads in the water decreased significantly. At the same time, the relative amount of beads in the ice increased significantly with increasing ice salinity. Both processes were not influenced by the presence of F. cylindrus. Also, we found indications that the presence of algae can affect the amount of microplastic beads sticking to the container walls. This could indicate that EPS produced by ice algae plays a significant role in surface binding properties of microplastics.
Overall, our results highlight that the interactions between algae and microplastics have an influence on the uptake of microplastics into sea ice with possible implications for the sea ice food web.
Plastic wastes are becoming the most common form of marine debris and present a growing global pollution problem. Here, we used a screening approach on hundreds of plastic waste-associated samples and discovered a marine bacterial community capable of efficiently colonizing and degrading both poly(ethylene terephthalate) (PET) and polyethylene (PE). Using absolute quantitative 16S rRNA sequencing and cultivation methods, we obtained corresponding abundance and purified cultures of three bacterial strains that mediated plastic degradation. We further performed numerous techniques to characterize the efficient degradation of PET and PE by the reconstituted bacterial community containing these three bacteria. Additionally, we used liquid chromatography-mass spectrometry to further demonstrate the degradation of PET and PE films by the reconstituted bacterial community. We conducted transcriptomic methods to investigate the plastic degradation process and potential degradation mechanisms mediated by our reconstituted bacterial community. Lastly, we overexpressed PE degradation enzymes based on transcriptomic results and verified their significant degradation effects on the PE films. Overall, our study establishes a stable marine bacterial community that efficiently degrades PET and PE and provides insights into plastic degradation pathways and their associated biological and mechanistic processes—paving the way for developing microbial products against plastic wastes.
To understand the fate of plastic in oceans and the interaction with marine organisms, we investigated the incorporation of (bio)polymers and microplastics in selected benthic foraminiferal species by applying FTIR (Fourier Transform Infrared) microscopy. This experimental methodology has been applied to cultured benthic foraminifera Rosalina globularis, and to in situ foraminifera collected in a plastic remain found buried into superficial sediment in the Mediterranean seafloor, Rosalina bradyi, Textularia bocki and Cibicidoides lobatulus. In vitro foraminifera were treated with bis-(2-ethylhexyl) phthalate (DEHP) molecule to explore its internalization in the cytoplasm. Benthic foraminifera are marine microbial eukaryotes, sediment-dwelling, commonly short-lived and with reproductive cycles which play a central role in global biogeochemical cycles of inorganic and organic compounds. Despite the recent advances and investigations into the occurrence, distribution, and abundance of plastics, including microplastics, in marine environments, there remain relevant knowledge gaps, particularly on their effects on the benthic protists. No study, to our knowledge, has documented the molecular scale effect of plastics on foraminifera.
Our analyses revealed three possible ways through which plastic-related molecules and plastic debris can enter a biogeochemical cycle and may affect the ecosystems: 1) foraminifera in situ can grow on plastic remains, namely C. lobatulus, R. bradyi and T. bocki, showing signals of oxidative stress and protein aggregation in comparison with R. globularis cultured in negative control; 2) DEHP can be incorporated in the cytoplasm of calcareous foraminifera, as observed in R. globularis; 3) microplastic debris, identified as epoxy resin, can be found in the cytoplasm and the agglutinated shell of T. bocki.
We hypothesize that plastic waste and their associated additives may produce modifications related to the biomineralization process in foraminifera. This effect would be added to those induced by ocean acidification with negative consequences on the foraminiferal biogenic C storage capacity.
Besides the ecotoxicological consequences of microplastics and associated chemicals, the association of microbes on plastics has greater environmental implications as microplastics may select for unique microbiome participating in environmentally significant functions. Despite this, the functional potential of the microbiome associated with different types of plastics is understudied. Here, we investigate the interaction between plastic and marine biofilm-forming microorganisms through a whole-genome sequencing approach on four types of microplastics incubated in the marine environment. Taxonomic analysis suggested that the microplastic surfaces exhibit unique microbial profiles and niche partitioning among the substrates. In particular, the abundance of Vibrio alginolyticus and Vibrio campbellii suggested that microplastic pollution may pose a potential risk to the marine food chain and negatively impact aquaculture industries. Microbial genera involved in xenobiotic compound degradation, carbon cycling, and genes associated with the type IV secretion system, conjugal transfer protein TraG, plant-pathogen interaction, CusA/CzcA family heavy metal efflux transfer proteins, and TolC family proteins were significantly enriched on all the substrates, indicating the variety of processes operated by the plastic-microbiome. The present study gives a detailed characterization of the rapidly altering microbial composition and gene pools on plastics and adds new knowledge surrounding the environmental ramifications of marine plastic pollution.
Microplastic debris has become a significant global environmental issue. Yet, the effects on ingestion of microplastics by protozoan grazers—an important link in the microbial loop—are scant. Feeding experiments were conducted with the free-living marine ciliate Uronema marinum grazing on cultured bacteria Pseudoaltermonas sp., exposing them to different concentrations or sizes of polystyrene beads for 96 h. The number of beads decreased during exposure experiments. Under the microplastic influence, the ciliate cells were observed to decrease in abundance, body size, and biomass. It was noted that the ciliate biomass in the highest microplastic density treatment was significantly lower than that in the control (98.1% lower) and that microplastics can be ingested by ciliate protozoa which performed an important role in the transportation of energy across the microbial loop. Moreover, carbon biomass of ciliates exposed to microplastics of different particle diameters decreased significantly compared to the control. However, this effect does not seem to vary depending on microplastic sizes. This study is a first step in providing experimental insight into the feeding relationship between microplastics and marine protozoan grazers. Further research based on components of the microbial loop is needed to explore the impacts of microplastics in marine food webs.
Plastic is a ubiquitous pollutant in the marine environment. Here, we investigated how temporal changes in environmental factors affect the microbial communities formed on plastic (polyethylene terephthalate; PET) versus a ceramic substrate. In situ mesocosms (N = 90 replicates) were deployed at the sediment–water interface of a coastal lagoon and sampled every 4 weeks for 424 days. Sequencing data (16S rRNA) was parsed based on variation in temperature with the exposure starting in fall 2016 and remaining in situ through the next four seasons (winter, spring, summer and fall 2017). PET biofilms were distinct during the summer when salinity and temperature were highest. In particular, a significant shift in the relative abundance of Ignavibacteriales and Cytophagales was observed during the summer, but PET and ceramic communities were again indistinguishable the following fall. Water temperature, salinity and pH were significant drivers of PET biofilm diversity as well as the relative abundance of plastic-discriminant taxa. This study illustrates the temporal and successional dynamics of PET biofilms and clearly demonstrates that increased water temperature, salinity, pH and exposure length play a role in the formation of a plastic-specific microbial community, but this specificity can be lost with a change in environmental conditions.
The increasing quantity of plastic waste in the ocean is providing a growing and more widespread novel habitat for microbes. Plastics have taxonomically distinct microbial communities (termed the ‘Plastisphere’) and can raft these unique communities over great distances. In order to understand the Plastisphere properly it will be important to work out how major ocean changes (such as warming, acidification and deoxygenation) are shaping microbial communities on waste plastics in marine environments. Here, we show that common plastic drinking bottles rapidly become colonised by novel biofilm-forming bacterial communities, and that ocean acidification greatly influences the composition of plastic biofilm assemblages. We highlight the potential implications of this community shift in a coastal community exposed to enriched CO2 conditions.
Bottom–up selection has an important role in microbial community assembly but is unable to account for all observed variance. Other processes like top–down selection (e.g., predation) may be partially responsible for the unexplained variance. However, top–down processes and their interaction with bottom–up selective pressures often remain unexplored. We utilised an in situ marine biofilm model system to test the effects of bottom–up (i.e., substrate properties) and top–down (i.e., large predator exclusion via 100 µm mesh) selective pressures on community assembly over time (56 days). Prokaryotic and eukaryotic community compositions were monitored using 16 S and 18 S rRNA gene amplicon sequencing. Higher compositional variance was explained by growth substrate in early successional stages, but as biofilms mature, top–down predation becomes progressively more important. Wooden substrates promoted heterotrophic growth, whereas inert substrates’ (i.e., plastic, glass, tile) lack of degradable material selected for autotrophs. Early wood communities contained more mixotrophs and heterotrophs (e.g., the total abundance of Proteobacteria and Euglenozoa was 34% and 41% greater within wood compared to inert substrates). Inert substrates instead showed twice the autotrophic abundance (e.g., cyanobacteria and ochrophyta made up 37% and 10% more of the total abundance within inert substrates than in wood). Late native (non-enclosed) communities were mostly dominated by autotrophs across all substrates, whereas high heterotrophic abundance characterised enclosed communities. Late communities were primarily under top–down control, where large predators successively pruned heterotrophs. Integrating a top–down control increased explainable variance by 7–52%, leading to increased understanding of the underlying ecological processes guiding multitrophic community assembly and successional dynamics.
The introduction and spread of marine non-indigenous species (NIS) and pathogens into new habitats are a major threat to biodiversity, ecosystem services, human health, and can have substantial economic consequences. Shipping is considered the main vector for marine biological invasions; less well understood is the increased spread of marine NIS and pathogens rafting on marine plastic debris (MPD). Despite an increasing research interest and recent progress in characterizing the plastisphere, this manuscript highlights critical knowledge gaps and research priorities towards a better understanding of the biosecurity implications of MPD. We advocate for future research to (i) investigate plastisphere community succession and the factors influencing NIS propagules and pathogens recruitment through robust experimental investigations; (ii) combine microscopy and molecular approaches to effectively assess the presence of specific taxa; (iii) include additional genetic markers to thoroughly characterize the biodiversity associated with MPD and explore the presence of specific marine pests.
Microorganisms able to form biofilms in marine ecosystems are selected depending on immersed surfaces and environmental conditions. Cell attachment directly on toxic surfaces like antifouling coatings suggests a selection of tolerant (or resistant) organisms with characteristics conferring adaptive advantages. We investigated if environment would drive metal resistance gene abundance in biofilms on artificial surfaces. Biofilms were sampled from three surfaces (a PVC reference and two antifouling coatings) deployed in three coastal waters with dissimilar characteristics: The Mediterranean Sea (Toulon) and Atlantic (Lorient) and Indian (Reunion) Oceans. The two coatings differed in metals composition, either Cu thiocyanate and Zn pyrithione (A3) or Cu2O (Hy). Metal resistance genes (MRG) specific to copper (cusA, copA, cueO) or other metals (czcA and pbrT) were monitored with qPCR in parallel to the microbial community using 16S rRNA gene metabarcoding. A lower a-diversity on A3 or Hy than on PVC was observed independent on the site. Weighted Unifrac suggested segregation of communities primarily by surface, with lower site effect. Metacoder log2 fold change ratio and LeFSe discrimination suggested Marinobacter to be specific of Hy and Altererythrobacter, Erythrobacter and Sphingorhabdus of A3. Likewise, the relative abundance of MRG (MRG/bacterial 16S rRNA) varied between surfaces and sites. A3 presented the greatest relative abundances for cusA, cueO and czcA. The latter could only be amplified from A3 communities, except at Toulon. Hy surface presented the highest relative abundance for copA, specifically at Lorient. These relative abundances were correlated with LeFSe discriminant taxa. Dasania correlated positively with all MRG except cueO. Marinobacter found in greater abundance in Hy biofilm communities correlated with the highest abundances of copA and Roseovarius with czcA. These results prove the selection of specific communities with abilities to tolerate metallic biocides forming biofilms over antifouling surfaces, and the secondary but significant influence of local environmental factors.
One of the major challenges in understanding the dynamics of the ocean’s health and functioning is the potential impact of the increasing presence of plastic. Besides the verified and macroscopic effects on marine wildlife and habitats, micro and macroplastics offer potential sites for microbial activity and chemical leaching. Most marine plastic is found initially in the upper meters of the water column, where fundamental biogeochemical processes drive marine productivity and food web dynamics. However, recent findings show a continuum of potential effects of these new marine components on carbon, nutrients and microbial processes. In the present analysis, we develop a common ground between these studies and we identify knowledge gaps where new research efforts should be focused to better determine potential feedbacks of plastics on the carbon biogeochemistry of a changing ocean.
Trillions of plastic debris fragments are floating at sea, presenting a substantial surface area for microbial colonization. Numerous cultivation-independent surveys have characterized plastic-associated microbial biofilms, however, quantitative studies addressing microbial carbon biomass are lacking. Our confocal laser scanning microscopy data show that early biofilm development on polyethylene, polypropylene, polystyrene, and glass substrates displayed variable cell size, abundance, and carbon biomass, whereas these parameters stabilized in mature biofilms. Unexpectedly, plastic substrates presented lower volume proportions of photosynthetic cells after 8 weeks, compared to glass. Early biofilms displayed the highest proportions of diatoms, which could influence the vertical transport of plastic debris. In total, conservative estimates suggest 2.1 × 1021 to 3.4 × 1021 cells, corresponding to about 1% of the microbial cells in the ocean surface microlayer (1.5 × 103 to 1.1 × 104 tons of carbon biomass), inhabit plastic debris globally. As an unnatural addition to sea surface waters, the large quantity of cells and biomass carried by plastic debris has the potential to impact biodiversity, autochthonous ecological functions, and biogeochemical cycles within the ocean.
Pollution of aquatic ecosystems by plastic wastes poses severe environmental and health problems and has prompted scientific investigations on the fate and factors contributing to the modification of plastics in the marine environment. Here, we investigated, by means of microcosm studies, the role of hydrocarbon-degrading bacteria in the degradation of poly(ethylene terephthalate) (PET), the main constituents of plastic bottles, in the marine environment. To this aim, different bacterial consortia, previously acclimated to representative hydrocarbons fractions namely, tetradecane (aliphatic fraction), diesel (mixture of hydrocarbons), and naphthalene/phenantrene (aromatic fraction), were used as inocula of microcosm experiments, in order to identify peculiar specialization in poly(ethylene terephthalate) degradation. Upon formation of a mature biofilm on the surface of poly(ethylene terephthalate) films, the bacterial biodiversity and degradation efficiency of each selected consortium was analyzed. Notably, significant differences on biofilm biodiversity were observed with distinctive hydrocarbons-degraders being enriched on poly(ethylene terephthalate) surface, such as Alcanivorax, Hyphomonas, and Cycloclasticus species. Interestingly, ATR-FTIR analyses, supported by SEM and water contact angle measurements, revealed major alterations of the surface chemistry and morphology of PET films, mainly driven by the bacterial consortia enriched on tetradecane and diesel. Distinctive signatures of microbial activity were the alteration of the FTIR spectra as a consequence of PET chain scission through the hydrolysis of the ester bond, the increased sample hydrophobicity as well as the formation of small cracks and cavities on the surface of the film. In conclusion, our study demonstrates for the first time that hydrocarbons-degrading marine bacteria have the potential to degrade poly(ethylene terephthalate), although their degradative activity could potentially trigger the formation of harmful microplastics in the marine environment.
The substantial increase in plastic pollution in marine ecosystems raises concerns about its adverse impacts on the microbial community. Microorganisms (bacteria, phytoplankton) are important producers of exopolymeric substances (EPS), which govern the processes of marine organic aggregate formation, microbial colonization, and pollutant mobility. Until now, the effects of nano- and micro-plastics on characteristics of EPS composition have received little attention. This study investigated EPS secretion by four phytoplankton species following exposure to various concentrations of polystyrene nano- and microplastics (55 nm nanoparticles; 1 and 6 μm microparticles). The 55 nm nanoparticles induced less growth/survival (determined on a DNA basis) and produced EPS with higher protein-to-carbohydrate (P/C) ratios than the exposure to microplastic particles. The amount of DNA from the four marine phytoplankton showed a higher negative linear correlation with increasing P/C ratios, especially in response to nanoplastic exposure. These results provide evidence that marine phytoplankton are quite sensitive to smaller-sized plastics and actively modify their EPS chemical composition to cope with the stress from pollution. Furthermore, the release of protein-rich EPS was found to facilitate aggregate formation and surface modification of plastic particles, thereby affecting their fate and colonization. Overall, this work offers new insights into the potential harm of different-sized plastic particles and a better understanding of the responding mechanism of marine phytoplankton for plastic pollution. The data also provide needed information about the fate of marine plastics and biogenic aggregation and scavenging processes.
Plastic wastes are ubiquitous in aquatic environment. Biofilms, which are often formed on the surface of plastic waste, may contain antibiotic resistance genes (ARGs). This study focused on the occurrence and distribution of ARGs, metal resistance genes (MRGs) and their associated microbial communities in biofilms formed on different types of plastic, in comparison to associated sediment and water samples taken from the Yangtze Estuary. The results showed that polypropylene (PP) and polyethylene (PE) with visible biofilms were highly abundant, and the average absolute abundance of most tested ARGs in the biofilms was higher than that in the sediment and water, indicating that biofilms on plastics can act as a reservoir for ARGs. Moreover, the biofilms on PE had a higher relative abundance of ARGs, compared to those on other plastics, and Firmicutes on PE may be potential hosts for these ARGs. Furthermore, Bacillus, Mycobacterium and Pseudomonas may be multi-resistance genera on plastics, and tetA and tetW may have more potential hosts on PET and PP. Metals, total phosphorus and salinity may be the major environmental factors regulating ARGs in biofilms formed on plastics. The results provide new insights into evaluating the risks caused by plastic wastes and ARGs in biofilms formed on plastics in estuarine environment.
Microplastic (MP) has been identified as an emerging vector that transports hydrophobic organic compounds (HOCs) across aquatic environments due to its hydrophobic surfaces and small size. However, it is also recognized that environmental factors affect MP's chemical vector effects and that attached biofilms could play a major role, although the specific mechanisms remain unclear. To explore this issue, an in situ experiment was conducted at Xiangshan Bay of southeastern China, and dynamics of HOCs (i.e., polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs)) and bacterial communities related to the model MP (i.e., PE fibers) were analyzed and compared. Through bacterial characterizations including the 16S rRNA approach, higher summer temperatures (31.4 ± 1.07 °C) were found to promote colonizing bacterial assemblages with larger biomasses, higher activity and more degrading bacteria than winter temperatures (13.3 ± 2.49 °C). Consequently, some sorbed pollutants underwent significant decline in the summer, and this decline was particularly the case for PAHs with low (2–3 rings) and median (4 rings) molecular weights such as phenanthrene (59.4 ± 1.6%), chrysene (70.6 ± 4.2%), fluoranthene (77.1 ± 13.3%) and benz[a]anthracene (71.5 ± 11.0%). In our winter test, however, most pollutants underwent a consistent increase throughout the 8-week exposure period. Moreover, more biorefractory pollutants including PCBs and high molecular weight (5–6 rings) PAHs accumulated regardless of bacterial characteristics. Two putative PAH-degrading bacteria appeared with high relative abundances during the summer test, i.e., family Rhodobacteraceae (18.6 ± 0.5%) and genus Sphingomicrobium (22.4 ± 3.6%), associated with drastic decreases in low (45.2 ± 0.4%) and median (66.0 ± 2.5%) molecular weight PAHs, respectively. Bacterial degradation effects of biofilms on PAHs are also supported by the correlative dynamics of salicylic acid, an important degradation intermediate of PAHs. The results of this study indicate that MP's HOC vector effects are essentially determined by interactions between attached pollutants and microbial assemblages, which are further related to bacterial activity and pollutant features. Further studies of biofilm effects on MP toxicity and on the metabolic pathways of MP-attached HOCs are required.
Here, there, and everywhere
No place is safe from plastic pollution. Brahney et al. show that even the most isolated areas in the United States—national parks and national wilderness areas—accumulate microplastic particles after they are transported there by wind and rain (see the Perspective by Rochman and Hoellein). They estimate that more than 1000 metric tons per year fall within south and central western U.S. protected areas. Most of these plastic particles are synthetic microfibers used for making clothing. These findings should underline the importance of reducing pollution from such materials.
Science , this issue p. 1257 ; see also p. 1184
Anthropogenic nutrient enrichment results in hypoxia, ocean acidification and elevated nutrients (HOAN) in coastal environments throughout the world. Here, we examined the composition of biofilm bacterial communities from a nutrient-excessive fish farm with low dissolved oxygen (DO) and pH levels using 16S rRNA gene sequencing. HOAN was accompanied by higher bacterial diversity and richness, and resulted in an altered community composition than the control site. HOAN resulted in more Flavobacteriales, Rhizobiales, Epsilonproteobacteria and Vibrionales, but less Oceanospirillales and Alteromonadales. Photobacterium sp. and Vibrio sp. were mostly found to be exclusive to HOAN conditions, suggesting that HOAN could possibly proliferate the presence of these potential pathogens. Our study suggests the complexity of bacterial communities to hypoxia and acidification in response to increased nutrient loads, along with identities of nutrient, oxygen and pH-susceptible bacterial groups that are most likely affected under this ocean trend.
