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Proposal of a new family Pseudodiploösporeaceae fam. nov. ( Hypocreales ) based on phylogeny of Diploöspora longispora and Paecilomyces penicillatus

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Abstract

During a field survey of cultivated Morchella mushroom diseases, Diploöspora longispora and Paecilomyces penicillatus, causal agents of pileus rot or white mould disease were detected, which resulted in up to 80% of yield losses. Multi-locus phylogenic analysis revealed that the fungi were affiliated in a distinct clade in Hypocreales. We further constructed a phylogenetic tree with broader sampling in Hypocreales and estimated the divergence times. The D. longispora and P. penicillatus clades were estimated to have diverged from Hypocreaceae around 129 MYA and Pseudodiploösporeaceae fam. nov is herein proposed to accommodate species in this clade. Two new genera, i.e. Pseudodiploöspora and Zelopaecilomyceswere, were introduced based on morphological characteristics and phylogenic relationships of Diploöspora longispora and Paecilomyces penicillatus, respectively. Five new combinations – Pseudodiploöspora cubensis, P. longispora, P. fungicola, P. zinniae, and Zelopaecilomyces penicillatus – were proposed.
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Mycology
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Proposal of a new family Pseudodiploösporeaceae
fam. nov. (Hypocreales) based on phylogeny
of Diploöspora longispora and Paecilomyces
penicillatus
Jingzu Sun, Shuang Yu, Yongzhong Lu, Hongwei Liu & Xingzhong Liu
To cite this article: Jingzu Sun, Shuang Yu, Yongzhong Lu, Hongwei Liu & Xingzhong Liu
(2022): Proposal of a new family Pseudodiploösporeaceae fam. nov. (Hypocreales) based
on phylogeny of Diploöspora�longispora and Paecilomyces�penicillatus, Mycology, DOI:
10.1080/21501203.2022.2143919
To link to this article: https://doi.org/10.1080/21501203.2022.2143919
© 2022 The Author(s). Published by Informa
UK Limited, trading as Taylor & Francis
Group.
Published online: 24 Nov 2022.
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Proposal of a new family Pseudodiploösporeaceae fam. nov. (Hypocreales) based
on phylogeny of Diploöspora longispora and Paecilomyces penicillatus
Jingzu Sun
a
, Shuang Yu
a,b,c
, Yongzhong Lu
d
, Hongwei Liu
a
and Xingzhong Liu
e
a
State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, No. 3 Park 1, Beichen West Road, Chaoyang
District, 100101, Beijing, China;
b
School of Medical Devices, Shenyang Pharmaceutical University, 110016, Shenyang, China;
c
School of
Traditional Chinese Materia Medica, Key Laboratory of Structure-Based Drug Design & Discovery, Ministry of Education, Shenyang
Pharmaceutical University, 110016, Shenyang, China;
d
School of Food and Pharmaceutical Engineering, Guizhou Institute of Technology,
550003, Guiyang, China;
e
Department of Microbiology, College of Life Science, Nankai University, 300350, Tianjin, China
ABSTRACT
During a eld survey of cultivated Morchella mushroom diseases, Diploöspora longispora and
Paecilomyces penicillatus, causal agents of pileus rot or white mould disease were detected,
which resulted in up to 80% of yield losses. Multi-locus phylogenic analysis revealed that the
fungi were aliated in a distinct clade in Hypocreales. We further constructed a phylogenetic tree
with broader sampling in Hypocreales and estimated the divergence times. The D. longispora and
P. penicillatus clades were estimated to have diverged from Hypocreaceae around 129 MYA and
Pseudodiploösporeaceae fam. nov is herein proposed to accommodate species in this clade. Two
new genera, i.e. Pseudodiploöspora and Zelopaecilomyceswere, were introduced based on morpho-
logical characteristics and phylogenic relationships of Diploöspora longispora and Paecilomyces
penicillatus, respectively. Five new combinations Pseudodiploöspora cubensis, P. longispora,
P. fungicola, P. zinniae, and Zelopaecilomyces penicillatus – were proposed.
ARTICLE HISTORY
Received 16 August 2022
Revised 10 October 2022
Accepted 31 October 2022
KEYWORDS
Five new combinations; two
new genera; one new family;
fungal pathogen; mushroom
disease
Introduction
True morels (Morchella, Morchellaceae, Pezizales,
Ascomycota) are one of the most popular edible
mushrooms with a long history of consumption in
Asia, Europe, and North America (Pilz et al. 2017; Liu
et al. 2018). Because of their good taste, culinary
qualities, and pharmacological performances in anti-
tumor, anti-inammatory, and antioxidant activities
(Tietel and Masaphy 2018; Zhang et al. 2019),
demands for morels have signicantly increased in
the market. In recent years, large-scale eld cultiva-
tion of Morchella was successfully achieved in China
(Liu et al. 2018). The morel cultivation area reached
approximately 12,000 ha in the production season of
2021–2020 in China, with an economic value of over
RMB 10 billion. However, with the rapid expansion of
cultivation, diseases become a bottleneck for morel
production, especially for diseases caused by fungi.
Several common fungal diseases have been identied
in the fruiting bodies of cultivated Morchella: stipe rot
disease caused by the Fusarium incarnatum–F. equiseti
species complex (Guo et al. 2016) and by
Purpureocillium lilacinum (Masaphy, 2022), cobweb
disease caused by Hypomyces/Cladobotryum species
(Lan et al. 2020), white mould disease caused by
Paecilomyces penicillatus (He et al. 2017) and pileus
rot disease caused by Diploöspora longispora (He et al.
2018; Liu et al. 2018). Previous investigations showed
that white mould diseases and pileus rot resulted in
up to 80% of morel yield losses each year, which was
attributed to a large number of conidia quickly
spreading around the cultivation areas (Wang et al.
2020). However, the fungal pathogens were mainly
identied based on sequence similarity of internal
transcribed spacer gene region (ITS) but lacked con-
vincing morphological evidence (Hyde et al. 2017,
2018; Liu et al. 2018). When did a blast of the ITS
sequence of D. longispora, Tanney et al. (2015) also
showed that D. longispora is most closely related to
P. penicillatus including its ex-type (CBS 448.69).
The genus Diploöspora was established by Grove
(1916) with Diploöspora rosea as the type species. This
genus was characterised by producing chains of hya-
line, cylindrical to fusiform, aseptate, or 1–3-septate
conidia (Tanney et al. 2015). Currently, phylogenetic
analysis of the partial sequences of small subunit
CONTACT Hongwei Liu liuhw@im.ac.cn; Xingzhong Liu liuxz@nankai.edu.cn
MYCOLOGY
https://doi.org/10.1080/21501203.2022.2143919
© 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.
This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use,
distribution, and reproduction in any medium, provided the original work is properly cited.
Published online 24 Nov 2022
(SSU) ribosomal RNA gene, internal transcribed
spacers (ITS), and large subunit (SSU) ribosomal RNA
gene reveals that D. rosea is an onygenalean fungus
(Tanney et al. 2015). Diploöspora longispora was rstly
isolated from a dead leaf of Colocasia esculenta var.
antiquorum in Japan (Matsushima 1976). Two varieties
of D. longispora are available, namely Diploöspora
longispora var. longispora and Diploöspora longispora
var. cubensis, and the latter was originally obtained
from the fallen leaves of Leguminosae in Cuba
(Castaneda 1987). Tanney et al. (2015) presented
that D. longispora and its varieties were most closely
related to P. penicillatus belonging to the order
Hypocreales and reached anity with Hypocreaceae.
However, apart from conidial chains, there is little
morphological similarity between P. penicillatus and
D. longispora, namely the penicillate conidiophores of
P. penicillatus with their basipetal conidiogenesis ver-
sus the branched conidiophores and acropetal con-
idiogenesis of D. longispora (Tanney et al. 2015).
The genus Paecilomyces was introduced by Bainier
(1907) with Paecilomyces variotii as the type species
(Samson 1974). This genus was featured by verticillate
conidiophores with divergent whorls of phialides,
having a cylindrical or inated base tapering to
a long and distinct neck and producing typically hya-
line, one-celled conidia. Phylogenetic analysis based
on 18S rDNA demonstrates that Paecilomyces is poly-
phyletic across two classes (Luangsa-Ard et al. 2004).
The type species, P. variotii, and its thermophilic
relatives were placed in Eurotiales (Eurotiomycetes),
while mesophilic species are in Hypocreales
(Sordariomycetes) (Luangsa-Ard et al. 2004, 2005).
Paecilomyces penicillatus was introduced by Samson
in 1974, which was rst isolated from rotten mush-
rooms. Based on the morphological characteristics, it
was placed in Eurotiales (Samson 1974). Based on the
molecular phylogenetic analysis of 18S rRNA
sequences and β-tubulin, P. penicillatus was trans-
ferred to the order Hypocreales (Sordariomycetes)
and revealed an uncertain anity with
Hypocreaceae (Luangsa-ard et al. 2004, 2005); how-
ever, P. penicillatus is still placed in Paecilomyces
sensu stricto.
According to Hyde et al. (2020), this order com-
prises 14 families, including Bionectriaceae,
Calcarisporiaceae, Clavicipitaceae, Cocoonihabitaceae,
Cordycipitaceae, Flammocladiellaceae, Hypocreaceae,
Myrotheciomycetaceae, Nectriaceae, Niessliaceae,
Ophiocordycipitaceae, Sarocladiaceae,
Stachybotryaceae, and Tilachlidiaceae. Recently,
Polycephalomycetaceae was introduced for the
accommodation of the fungicolous species from
Ophiocordycipitaceae based on a concatenated matrix
of six genetic markers (LSU, ITS, SSU, TEF, RPB1, and
RPB2, personal communication). These hypocrealean
fungi are mostly found as saprobes on decaying wood
and in soil, pathogens or endophytes of plants, nema-
todes, and insects (Zhang et al. 2018, personal com-
munication), as well as parasites on other fungi and
lichens (Zhu and Zhuang 2013; Sun et al. 2019a).
Generally, hypocrealean fungicolous taxa are the
more serious, common pathogens of most cultivated
mushrooms (Sun et al. 2019b). Diploöspora longispora
and Paecilomyces penicillatus (Hypocreales) are recog-
nised as the serious pathogens of cultivated
Morchella, and previous studies indicated that their
family ranks are uncertain (Luangsa-Ard et al. 2004;
Luangsa-ard et al. 2005; Tanney et al. 2015).
Additionally, Tanney et al. (2015) and our analyses
presented that D. longispora and its variants were
most closely related to several P. penicillatus strains
(including CBS 448.69, the ex-type strain) based on an
ITS BLAST query. Currently, multi-locus phylogenetic
analyses and divergence time estimation have been
used to clarify the higher ranking of fungal taxa (Hyde
et al. 2017, 2020). This study performed phylogenetic
analysis and divergence time estimation using
a concatenated matrix of ve genetic markers (LSU,
ITS, SSU, TEF, and RPB2). Based on the results, a new
family, Pseudodiploösporeaceae, and two new genera
Pseudodiploöspora and Zelopaecilomyces, are intro-
duced to accommodate the fungal taxa misplaced
under Diploöspora and Paecilomyces, respectively.
Additionally, we introduce four combinations includ-
ing the fungal pathogens causing pileus rot disease
and white mould disease of cultivated Morchella.
Materials and methods
Specimens, isolates, and morphological
observation
Fresh specimens were collected along with the fruit-
ing bodies of cultivated Morchella mushrooms in
Kunming Yunnan province, Ankang, Shanxi province,
Baoding, Hebei, province, Ningxia Hui Autonomous
Region during the 2019 and 2021 cultivation seasons.
2J. SUN ET AL.
Fruiting bodies were examined from free-hand sec-
tions using a stereomicroscope. The conidia were
picked and streaked on potato extract agar (PDA)
and incubated at 25°C for 7 days. A Nikon Eclipse 80i
light microscope, equipped with dierential interfer-
ence contrast (DIC) optics, was used to capture digital
images. Tarosoft (R) v.0.9.7 Image Frame Work was
used to measure the morphologic structures, and
Adobe Photoshop CS6 Extended version 13.0.1 soft-
ware (Adobe Systems, USA) to edit the photographic
plates.
For observation by SEM, each patch (0.3 × 0.3 cm)
of the fresh infected and un-infected M. sextelata was
xed in 2.5% glutaraldehyde in 0.05 M phosphate-
buered saline (BPS, pH 7.2) at 4°C. After 24 hours,
the samples were washed with deionised 0.1 M PBS
for 7 min three times, then dehydrated in graded
ethanol (50%,70%, 80%, 95%) for 15 min, respectively.
Subsequently, the samples were dehydrated in 100%
ethanol for 15 min three times and dried in a fume
hood using critical point dryers (Autosamdri® 931,
Tousimis, MD, USA) with CO
2
. Finally, the samples
were sputter-coated with gold by an ion sputter
coater (ISC150, SuPro Instruments, Shenzhen, China)
with a voltage of 110 V, a frequency of 50/60 Hz, and
a current of 10 mA under vacuum of lower than 1–
2 Pa for 60 s. The samples were loaded onto the SEM
(SU8010, Hitachi, Tokyo, Japan) and observed.
DNA extraction, PCR amplication, and sequencing
Genomic DNA of each strain was extracted from fresh
mycelium grown on PDA after 7 days of growth fol-
lowing the rapid “thermolysis” method described by
Zhang et al. (2010). For the amplication of SSU, ITS,
LSU, RPB2, and TEF1-α gene fragments, the following
primer pairs: NS1/NS4 primer pair for partial small
subunit ribosomal RNA gene region (SSU), ITS4/ITS5
primer pair for internal transcribed spacer gene
region (ITS) (White et al. 1990), LROR/LR5 for partial
large subunit rRNA gene region (LSU), 983 F/2218 R
for partial translation elongation factor 1-alpha gene
region (TEF-1α) (Carbone and Kohn 1999); RPB2-5 F/
RPB2-7 R for partial RNA polymerase II largest subunit
gene region (RPB2) (Liu et al. 1999) was used. Each
PCR reaction consisted of 12.5 μl Taq PCR
SuperMix (TianGen Biotech Co., Beijing, China), 1 μl
of each forward and reverse primer (10 μM), 0.5 μl
DMSO, 3 μl DNA template, and 7 μl double sterilised
water. PCR reactions were performed in a fast thermal
cycler (LongGene Co., Hangzhou, China), following
the protocols described by Gu et al. (2020). The PCR
products were sequenced by Beijing Tianyihuiyuan
Bioscience and Technology after being evaluated by
electrophoresis.
Phylogenetic analysis
SeqMan Pro v. 7.1.0 (DNASTAR Lasergene) was used
to trim the low-quality bases at both ends of the raw
forward and reverse reads and to assemble them. The
newly obtained sequences were queried against the
nuclear database of NCBI. For species delimitation,
the aligned ITS sequence matrix of 58 taxa including
our isolates, Diploöspora, and available species of
Paecilomyces and its allied fungi, as well as Alternaria
species (outgroup taxa) were used to construct the
phylogenetic tree. The SSU, ITS, LSU, RPB2, and TEF
sequences of available generic type species and
reprehensive of Hypocreales and representative spe-
cies of all accepted Hypocaceae from recent studies
(Sun et al. 2017) were employed for multi-locus phy-
logenetic analysis. Gelasinospora tetrasperma,
Neurospora crassa and Sordaria micola were chosen
as the outgroup taxa. The alignments were generated
by using MAFFT version 7.03 with the Q-INS-I strategy
(Katoh and Standley 2013). Conserved blocks were
selected from the initial alignments with Gblocks
0.91 b (Castresana 2000). The best nucleotide substi-
tution model for each gene was determined by using
jModeltest2.1.1 (Darriba et al. 2012). GTR+G + I was
estimated as the best-t model for ITS; RPB2, TN93 + G
was estimated as the best-t model for SSU; and LSU,
TN93 + G + I as the best-t model for TEF-1α under
the output strategy of BIC. The multi-locus phyloge-
netic analyses included 1403 characters for SSU, 607
characters for ITS, 893 characters for LSU, 1044 char-
acters for RPB2, and 907 characters for TEF. All char-
acters were weighted equally, and gaps were treated
as missing characters.
Maximum likelihood (ML) analyses were per-
formed by RAxML2.0 (Edler et al. 2021), using the
GTR+GAMMA+I model. The maximum likelihood
bootstrap proportions (MLBP) were determined
using 1000 replicates. Bayesian inference (BI) ana-
lyses were conducted with MrBayes v3.2.7
(Ronquist et al. 2012). Metropolis-coupled Markov
Chain Monte Carlo (MCMC) searches were
MYCOLOGY 3
calculated for 10,000,000 generations, sampling
every 100th generation with the best-t model
for each gene. Two independent analyses with six
chains each (one cold and ve heated) were car-
ried out until the average standard deviation of the
split frequencies dropped below 0.01. The initial
25% of the generations of MCMC sampling were
discarded as burn-in. The renement of the phylo-
genetic tree was used for estimating Bayesian
inference posterior probability (PP) values. The
tree was viewed in FigTree v1.4 (Rambaut 2012),
and values of maximum likelihood bootstrap pro-
portion (MLBP) greater than 50% and Bayesian
inference posterior probabilities (BIPP), greater
than 95% at the nodes, are shown along branches.
Relative divergence time estimation
Molecular dating analysis was performed using BEAST
v1.10.4 (Suchard et al. 2018). The aligned data were
partitioned for each SSU, ITS, LSU, RPB2, and TEF1 data-
set, and these were loaded to BEAUti v1.10.4. to prepare
the XML le. The data partitions were set with unlinked
substitution and clock models to independently esti-
mate each gene partition. Taxa sets were developed for
each calibration of the common ancestor nodes, asso-
ciated with the most recent common ancestor (TMRCA).
The Hypocreales crown with a normal distribution
(mean = 216, SD = 27.5, with 97.5% of CI = 269 MYA).
Calibration of the core Clavicipitaceae, using a normal
distribution (mean = 133.7, SD = 20.8, with 97.5% of
CI = 174.5 MYA). Calibration of the Ophiocordyceps
crown, using an exponential distribution (oset = 100,
mean = 27.5, with 97.5% CI of 200 MYA) (Samarakoon
et al. 2016; Hyde et al. 2017). The Yule process tree prior
was used to model the speciation of nodes in the topol-
ogy with a randomly generated starting tree. The ana-
lyses were performed for 100 million generations, with
sampling parameters every 1000 generations. The eec-
tive sample sizes were checked in Tracer v.1.7.2 and the
acceptable values are higher than 200. The rst 10,000
trees (10%) representing the burn-in phase were dis-
carded based on Tracer v.1.7.2, and 90,000 trees were
combined in LogCombiner v1.10.4. The maximum clade
credibility (MCC) tree was given by summarised data and
estimated in TreeAnnotator v1.10.4. The molecular dat-
ing tree was viewed in FigTree v1.4 (Rambaut 2012). In
the MCC tree, node bars indicate 90% condence inter-
vals for the divergence time estimates.
Results
Phylogenetic analyses
The phylogenetic trees showed that generic type
species of Diploöspora rosea (DAOM 250100) and
Paecilomyces variotii (CBS 101075) were positioned
in the class Eurotiomycetes, while isolates of
Diploöspora longispora and Paecilomyces penicillatus
were placed in the class Sordariomycetes (Figure 1).
Within Sordariomycetes, D. longispora (UAMH 340,
UAMH 6404, UAMH 6367, strain 60319, and strain
60320), D. longispora var. cubensis (CBS 727.87), and
P. penicillatus (CBS 448.69, IMI 186962) clustered
together with maximum support (MLBP/
BIBP = 100%/1.00, Figure 1). In the phylogenetic
tree, those fungi also showed anities with hypocrea-
lean fungi, especially close to Hypomyces corticiicola
(MLBP/BIBP = 100%/1.00, Figure 1).
To determine the family placement of
Diploöspora longispora and Paecilomyces variotii,
a phylogenetic tree was constructed with
a sequence matrix of ve alignment les including
SSU (1043 bp), ITS (607), LSU (884 bp), EF1-α (907
bp), and RPB2 (1044 bp) sequence data (a total of
4853 characters) from 111 taxa of Hypocreales and
three outgroup taxa (Gelasinospora tetrasperma,
Neurospora crassa, and Sordaria micola;
Figure 2). The phylogenetic tree well explained
the phylogenetic relationship within Hypocreales.
There were 15 clades formed in Hypocreales cor-
responding to the families Bionectriaceae,
Calcarisporiaceae, Clavicipitaceae, Cordycipitaceae,
Flammocladiellaceae, Cocoonihabitaceae,
Hypocreaceae, Nectriaceae, Niessliaceae,
Ophiocordycipitaceae, Polycephalomycetaceae,
Sarocladiaceae, Stachybotryaceae, and the clade
comprising Diploöspora longispora and
Paecilomyces penicillatus. Diploöspora longispora
and P. penicillatus are phylogenetically distinct
from the type species of their respective genera
and are better accommodated in as-yet unde-
scribed genera. They are hereafter referred to as
Pseudodiploöspora longispora and
Zelopaecilomyces penicillatus, respectively, and for-
mally described below. Pseudodiploöspora longis-
pora and Z. penicillatus form a strongly supported
(MLBP/BIBP = 100%/1.00; Figure 2) distinct clade sister
to Hypocreaceae with robust support (MLBP/
BIBP = 94%/1.00; Figure 2). Based on its phylogenetic
4J. SUN ET AL.
distinction from Hypocreaceae, this clade is described
below as Pseudodiploösporeaceae fam. nov.
Relative divergence time estimation
According to the divergence time estimates, the
crown age of Hypocreales is around 206 (165–246)
MYA (Figure 3). Based on our analysis,
Sarocladiaceae was the earlier diverged family in
Hypocreales, which diverged from other hypocrealean
fungi at approximately 159 MYA. Flammocladiellaceae
and Tilachlidiaceae were the youngest families within
Hypocreales, which diverged from each other about
116 MYA. In general, the divergence time for the
currently accepted 15 families is within the range of
116–159 MYA, suggesting that a family can at best be
as young as 116 MYA. In the MCC tree, our newly
generated Pseudodiploösporeaceae diverged from
Hypocreaceae at about 129 MYA, falling within the
temporal band of families.
Taxonomy
Pseudodiploösporeaceae Jing Z. Sun, X.Z. Liu & H.W.
Liu, fam. nov.
Fungal name: FN 571280
Etymology: Pseudodiploöspor-, from the genus
name Pseudodiploöspora, and -aceae is the family
sux
Type genus: Pseudodiploöspora Jing Z. Sun, X.Z.
Liu & H.W. Liu, gen. nov.
Figure 1. Phylogenetic analysis of Diploöspora longispora and Paecilomyces penicillatus based on ITS data set. The tree is rooted with
three Alternaria species (Dothideomycetes). Bootstrap values higher than 50% from RAxML (BSML) (left) are given above the nodes.
Bayesian posterior probabilities greater than 0.95 are indicated (BYPP) (right). Hyphens indicate bootstrap values less than 50% or
Bayesian posterior probability values lower than 0.90.
T
indicates the type. The type species of Diploöspora and Paecilomyces are in
blue.
MYCOLOGY 5
Figure 2. Multi-locus phylogenetic analysis of Hypocreales based on a combined SSU, ITS, LSU, TEF, and RPB2 data set. The tree
is rooted with Gelasinospora tetrasperma, Neurospora crassa, and Sordaria fimicola. Bootstrap values higher than 50% from
RAxML (BSML) (left) are given above the nodes. Bayesian posterior probabilities greater than 0.90 are indicated (BYPP) (right).
Hyphens indicate bootstrap values less than 50% or Bayesian posterior probability values lower than 0.90. The generic type
species are in blue.
6J. SUN ET AL.
Figure 3. The MCC tree of Hypocreales, including some representative strains of Sordariales, was obtained from a Bayesian approach
(BEAST). Bars correspond to the 95% highest posterior density (HPD) intervals. The fossil minimum age constraints and second
calibrations used in this study are marked with green dots. The divergence time of orders is marked in purple dots and families with
blue dots. The generic type species are in blue.
MYCOLOGY 7
Description: Saprobic or fungicolous; Sexual
morph: Undetermined. Asexual morph: Colonies on
natural substrate euse, whitish. Mycelia, supercial
or immersed; Hyphae branched, septate, hyaline.
Conidiophores micronematous to macronematous,
mononematous, penicillate. Conidiogenous cells sym-
podial, acropetal, basipetal, hyaline. Conidia cylindri-
cal, ellipsoidal, limoniform, solitary, or catenate in
simple or branched chains. Ramoconidia cylindrical
or fusiform, aseptate or septate, truncate at the
base, with terminal scars.
Note: Both phylogenetic analysis and molecular clock
evidence based on SSU, ITS, LSU, TEF, and RPB2
sequence data support Pseudodiploösporeaceae as
a sister group of Hypocreaceae. The MCC tree estimates
that Pseudodiploösporeaceae split from Hypocreaceae
around 129 MYA, falling within the temporal band of
families (50–150 MYA) (Hyde et al. 2017). Therefore,
Pseudodiploösporeaceae is introduced as a new family
within Hypocreales, to accommodate Pseudodiploöspora
and Zelopaecilomyces.
Pseudodiploöspora Jing Z. Sun, X.Z. Liu & H.W. Liu,
gen. nov.
Fungal name: FN 571281
Etymology: pseudo, in Latin, meaning “false or spur-
ious thing”, referring to members of this genus being
morphologically similar to Diploöspora but phylogen-
etically distinct to the Diploöspora species
Type species: Pseudodiploöspora longispora
(Matsush.) Jing Z. Sun, X.Z. Liu & H.W. Liu, comb. nov.
Description: Saprobic or fungicolous; Sexual
morph: Undetermined. Asexual morph: Colonies on
natural substrate euse, whitish. Mycelia, supercial
or immersed; Hyphae branched, septate, hyaline.
Conidiophores micronematous to macronematous,
aseptate or septate. Conidiogenous cells sympodial,
acropetal, hyaline. Conidia cylindrical, ellipsoidal, fusi-
form, catenate in simple or branched chains, hyaline.
Ramoconidia cylindrical or fusiform, truncate at the
base, with terminal scars, hyaline.
Note: The genus Diploöspora was established by
Grove (1916) with Diploöspora rosea as the type spe-
cies. Phylogenetic evidence supported that D. rosea is
an onygenalean fungus within Eurotiomycetes
(Tanney et al. 2015). Diploöspora longispora and its
two variants, D. longispora var. longispora and
D. longispora var. cubensis, were isolated originally
from the fallen leaves (Matsushima 1976; Castañeda
1987). Based on an ITS BLAST query, Tanney et al.
(2015) proposed that D. longispora and its varieties
belong to the order Hypocreales, and reached anity
with Hypocreaceae. While, our phylogenetic analysis
based on the ITS sequence data also showed strains of
D. longispora (UAMH 340, UAMH 6404, UAMH 6367,
strain 60,319, and strain 60,320), and D. longispora var.
cubensis (CBS 727.87, IMI 186962) grouped with
strong support (MLBP/BIBP = 100%/1.00, Figure 1) in
Sordariomyetes rather than in Eurotiomyetes. In our
multi-locus phylogenetic tree, those taxa clustered
in a distinct clade within Hypocreales but do not
belong to Hypocreaceae (Figure 2), representing
a new genus rank. Morphologically, despite those
taxa and Diploöspora producing conidial chains, they
are distinct from Diploöspora in acropetal conidiogen-
esis and the shape and size of conidia.
Pseudodiploöspora is therefore introduced herein to
accommodate those species misplaced in
Diploöspora.
Pseudodiploöspora fungicola (R.F. Castañeda) Jing
Z. Sun, X.Z. Liu & H.W. Liu, comb. nov.
Fungal name: FN 571282
Basionym: Diploöspora fungicola R.F. Castañeda,
Fungi Cubenses II: 4 (1987)
Type: INIFAT C86/132 (Holotype)
Description: See the original description in
Castañeda Ruiz, R.F. (1987), Fungi Cubenses II, p. 22
Substrate/Host: On dead basidioma of Auricularia
Distribution: Cuba
Note: There is no available sequence of Diploöspora
fungicola, and its morphological characters are highly
similar to Pseudodiploöspora longispora. Additionally,
this species colonised the basidioma of Auricularia,
which suggests a similar fungicolous ecology relating
it to Pseudodiploöspora longispora (Castañeda Ruiz, R.
F. 1987).
Pseudodiploöspora longispora (Matsush.) Jing Z. Sun,
X.Z. Liu & H.W. Liu, comb. nov. Figures 4 and 5
Fungal name: FN 571283
Basionym: Diploöspora longispora Matsush., Icones
Microfungorum a Matsushima lectorum: 61 (1975)
Figure 5
Synonym: Diploöspora longispora var. longispora
Matsush., Icones Microfungorum a Matsushima lec-
torum: 61 (1975)
Type: INIFAT C87/58 (Holotype)
8J. SUN ET AL.
Description: See the original description in
Matsushima, T. (Matsushima and Matsushima 1976),
Icones Microfungorum a Matsushima Lectorum, p. 61.
Substrate/Host: On dead leaf of Colocasia esculenta
var. antiquorum, Japan (Matsushima and Matsushima
1976). On the fruiting body of cultivated Morchella spp.,
China (CGMCC 3.23768, CGMCC 3.23769, CGMCC
3.23770, CGMCC 3.23771). Skin and foot, Canada
(UAMH 340) Canada (https://www.uamh.ca/index.html)
Distribution: Japan, China
Note: Diploöspora longispora was rst isolated from
a dead leaf of Colocasia esculenta var. antiquorum in
Japan (Matsushima and Matsushima 1976). We intro-
duce a new combination of Pseudodiploöspora long-
ispora to accommodate D. longispora. Both analyses in
Tanney et al. (2015) and this study suggested that
Pseudodiploöspora longispora is most closely related
to Paecilomyces penicillatus. However, the latter diers
from Pseudodiploöspora longispora in the penicillate
conidiophore, and basipetal conidiogenesis, as well as
the shape and size of conidia (Figures 5 and 6). We did
not treat Paecilomyces penicillatus as a synonym of
Pseudodiploöspora longispora herein because of the
great morphological dierences.
Pseudodiploöspora cubensis (R.F. Castañeda) Jing
Z. Sun, X.Z. Liu & H.W. Liu, comb. nov. Figures 4 and 5
Fungal name: FN 5712997
Synonym: Diploöspora longispora var. cubensis R.F.
Castañeda, Fungi Cubenses II: 5 (1987)
Type: CBS 727.87 (ex-type strain)
Description: See the original description in
Castañeda (1987), Fungi Cubenses II.:1-22
Figure 4. Pseudodiploöspora longispora (CGMCC 3.23768). (a, b) Pseudodiploöspora longispora and its host fungus (Morchella sextelata). (c,
d) Mycelia on a fruiting body of M. sextelata. (e–h) Conidiophores with conidia. (i) Conidiogenous cell. (j) Conidiogenous scars and
conidia. (k–m) Hypha and conidia of P. longispora (in red) across the fruiting body of M. sextelata. Scale bars: c = 200 μm; d = 100 μm;
e-g, i = 25 μm; h, j = 10 μm.
MYCOLOGY 9
Substrate/Host: On fallen leaves of Leguminosae:
Cuba (Castaneda 1987). On porcupine dung in
a cave (Including UAMH 6367, UAMH 6404) (https://
www.uamh.ca/index.html)
Distribution: Cuba
Note: Pseudodiploöspora cubensis was originally
obtained from the fallen leaves of Leguminosae in
Cuba (Castaneda 1987). The ITS sequence of CBS
727.87 is 96% similar to Pseudodiploöspora longispora
(identities, 514/537, gaps, 5/537). Additionally, regard-
ing the ellipsoidal conidia of Pseudodiploöspora
cubensis against cylindrical or ramoconidia of
P. longispora, as well as the original isolation resource
and location, we introduce a new combination of
Pseudodiploöspora cubensis to accommodate
D. longispora var. cubensis.
Pseudodiploöspora zinniae (Matsush.) Jing Z. Sun, X.Z.
Liu & H.W. Liu, comb. nov.
Fungal name: FN 571284
Basionym: Diploöspora zinniae Matsush.,
Matsushima Mycological Memoirs 2: 8 (Matsushima
1981)
Type: MBT 70959
Description: See the original description in Matsush.
(1981), Matsushima Mycological Memoirs 2, p. 8
Substrate/Host: Seed of Zinnia elegans
Distribution: Japan
Note: There is no available sequence of Diploöspora
zinnia, and we transfer this fungus to
Pseudodiploöspora based on its sympodial, acropetal
conidiogenesis, and the cylindrical-fusiform conidia
(Matsushima 1981).
Zelopaecilomyces Jing Z. Sun, X.Z. Liu & H.W. Liu,
gen. nov.
Fungal name: FN 571285
Etymology: Zelo, meaning “emulation”, refers to
members of this genus being morphologically similar
to Paecilomyces but phylogenetically distinct from the
true Paecilomyces species
Type species: Zelopaecilomyces penicillatus
(Samson) Jing Z. Sun, X.Z. Liu & H.W. Liu,
comb. nov.
Description: Saprobic or fungicolous; Sexual morph:
Undetermined. Asexual morph: Colonies on natural
substrate euse, whitish. Mycelia, supercial or
immersed; Hyphae branched, septate, hyaline.
Conidiophores mononematous, penicillate, with
whorls of phialides. Phialides cylindrical, basal portion
with distinct neck. Conidiogenous cells basipetal, hya-
line. Conidia cylindrical, ellipsoidal, solitary, or cate-
nate in simple or in chains, aseptate, truncate at the
base, with terminal scars. Chlamydospores produced
Figure 5. Pseudodiploöspora longispora (Diploöspora longispora,
INIFAT C87/58, Holotype!). (a, b) Conidiophores with conidia. ().
Conidiogenous cell. (d) Conidiogenous scars and conidia. Scale
bars = 20 μm. Redrawn from Matsushima (1975).
Figure 6. Zelopaecilomyces penicillatus (CBS 448.69, ex-type strain).
(a) Conidiophores with conidia (CBS 448.69). (b) Phialides (type
Spicaria penicillate). (c) Chlamydospores. (d) Conidia. Scale
bars = 10 μm. Redrawn from Samson (1974).
10 J. SUN ET AL.
submerged in the agar, single, ellipsoidal to pyriform,
aseptate.
Note: The genus Paecilomyces was introduced by
Bainier (1907) with Paecilomyces variotii as the type
species. The type species, P. variotii, and its thermophi-
lic relatives were placed in Eurotiales (Eurotiomycetes),
while entomopathogenic mesophilic species were
placed in Hypocreales (Sordariomycetes) under the
genus Isaria but did not include Paecilomyces penicilla-
tus (Luangsa et al. 2004; Luangsa-Ard et al. 2005). Those
taxa placed in Isaria were accepted in Samsoniella
(Hypocreales, Cordycipitaceae) (Mongkolsamrit et al.
2018). Our phylogenetic analyses showed that
Z. penicillatus (CBS 448.69, ex-type strain) was posi-
tioned in Pseudodiploösporeaceae (Figure 2).
Despite a more than 99% similarity of the SSU (iden-
tities, 1589/1590, gap, 1/1590) and ITS sequence
(identities, 502/505; gaps, 3/505 gaps) between
Z. penicillatus (CBS 448.69) and Pseudodiploöspora
loogispora, respectively. The ITS of Z. penicillatus is
4% dierent from Pseudodiploöspora cubensis (iden-
tities, 471/477; gaps, 6/477). Additionally,
Z. penicillatus diers from both P. cubensis and
P. loogispora in having penicillate conidiophores
and basipetal conidiogenesis. Herein, we introduce
Zelopaecilomyces for the accommodation of
P. penicillatus based on its morphological distinc-
tions.
Zelopaecilomyces penicillatus (Höhn.) Jing Z. Sun, X.Z.
Liu & H.W. Liu, comb. nov. Figure 6
Fungal name: FN 571286
Basionym: Paecilomyces penicillatus (Höhn.)
Samson, Studies in Mycology 6: 72 (1974)
Spicaria penicillata Höhn., Annales Mycologici 2 (1):
56 (1904)
Type: ex-type strain CBS 448.69
Description: See the original description in Samson
(1974), Paecilomyces and some allied Hyphomycetes,
Studies in Mycology, 6, p.72
Substrate/Host: Peridia of Arcyria cinerea, rotting
Agaricus bisporus mushroom
Distribution: Austria, Belgium
Note: Zelopaecilomyces penicillatus (Spicaria penicil-
lata) was introduced by Höhnel (1904) based on its
morphological characteristics. It was rst isolated
from the peridia of the myxomycete Arcyria cinerea
and later isolated from a rotten Agaricus bisporus
mushroom, with the resulting strain (CBS 448.69) trea-
ted as the ex-type strain (Samson 1974). Herein, we
introduce a new combination, Zelopaecilomyces peni-
cillatus, in consideration of the distinct phylogenetic
position and morphological features of P. penicillatus.
Discussion
A combination of phylogenetic analyses and divergence
time estimation has been widely used in solving the
classication schemes and higher ranking of taxa (Hyde
et al. 2017). According to this polyphasic approach,
a large number of taxonomic positions of fungi have
been rened (Hyde et al. 2020; He et al. 2022). Hyde
et al. (2020) gave an update of Sordariomycetes based
on phylogenetic analyses and divergence time estima-
tion. According to their results, Hypocreales contained 14
families: Bionectriaceae, Calcarisporiaceae, Clavicipitaceae,
Cocoonihabitaceae, Cordycipitaceae, Flammocladiellaceae,
Hypocreaceae, Myrotheciomycetaceae, Nectriaceae,
Niessliaceae, Ophiocordycipitaceae, Sarocladiaceae,
Stachybotryaceae, and Tilachlidiaceae. Both our multi-
locus phylogeny and divergence time evidence reveal
the proposed natural classication of Hypocreales. Multi-
locus phylogeny reals a family rank for
Pseudodiploösporeaceae because its taxa formed
a strongly supported and distinct clade sister to
Hypocreaceae. Hyde et al. (2017) introduced a temporal
banding for Ascomycota, and time ranges of 150–250
MYA and 50–150 MYA were recommended as the
boundary for orders and families, respectively. Our MCC
results presented that the crown age of Hypocreales is
around 206 (165–246) MYA (Figure 3), which concurs with
the previous results (Hyde et al. 2017, 2020). Within
Hypocreales, the divergence time for currently accepted
families is within the range of 116–159 MYA suggesting
that a family can at best be as young as 116 MYA in
Hypocreales. Divergence time showed that the family
Pseudodiploösporeaceae divorced from Hypocreaceae
about 129 MYA, falling within the temporal band of
families. Additionally, Polycephalomycetaceae was
recently introduced as a new family based on
a concatenated matrix of six genetic markers (SSU, ITS,
LSU, RPB1, RPB2, and TEF) (personal communication),
both our phylogenetic tree and MCC tree also sup-
port its family rank in Hypocreales herein. Vu et al. (Vu
et al. 2019) proposed a taxonomic threshold pre-
dicted for lamentous fungal identication, and
88.5% similarity of ITS barcodes was suggested for
MYCOLOGY 11
family rank. A BLAST querying the ITS sequence of
species from Pseudodiploösporeaceae presented less
than 89% similarity against that species from
Hypocreales, which also supported distinct family
rank for Pseudodiploösporeaceae.
The taxonomic position of Diploöspora Grove was
conrmed as a member of Eurotiomycetes by re-
examination of its generic type species D. rosea
(Tanney et al. 2015). Several species including
Pseudodiploöspora longispora (previously known as
Diploöspora longispora) and Pseudodiploöspora cuben-
sis (previously known as Diploöspora longispora var.
cubensis) placed previously in Diploöspora were
shown an anity for Hypocrealean fungi
(Sordariomycetes) based on the phylogenetic analysis
(Luangsa-Ard et al. 2004, 2005; Tanney et al. 2015).
Our phylogenetic analysis also supported that
P. longispora and P. cubensis were more closely related
to Hypocreaceae (Figure 1–2). In our multi-locus phy-
logenetic tree, those taxa clustered in a distinct clade
within Hypocreales but were outside of the core
Hypocreaceae (Figure 2), representing a new family
and subsequent genera. Pseudodiploöspora is there-
fore introduced herein to accommodate those species
misplaced in Diploöspora concerning the original
nomenclature. Pseudodiploöspora is distinct from
Diploöspora in having head-to-tail (acropetal) arrays
of conidiogenesis against the latter of tail-to-head
(basipetal) arrays of conidiogenesis. Additionally, the
conidia of Pseudodiploöspora are longer but more
slender than that of Diploöspora (Tanney et al. 2015).
We introduce P. longispora and P. cubensis for accept-
ing D. longispora and D. longispora var. cubensis
regarding the 95.66% similarity of ITS sequence
between P. cubensis (CSB 727.877) and other
P. longispora isolates. Despite lacking molecular data
on Diploöspora fungicola and Diploöspora zinnia, we
enrolled them in Pseudodiploöspora according to the
morphological features in the original description.
Diploöspora coprophilia with phialides and producing
subglobose conidia is unlikely to be related to
Diploöspora rosea (Tanney et al. 2015) and
Pseudodiploöspora longispora. Its taxonomic position
needs to be further demonstrated. It was suggested
that Diploöspora indica producing brown conidio-
phores may be better placed in Parapleurotheciopsis
but not in Diploöspora (Tanney et al. 2015). We also
excluded D. indica from Pseudodiploöspora in consid-
eration of the brown conidiophore of the fungus.
Both analyses by Tanney et al. (2015) and this study
presented that P. longispora is most closely related to
Z. penicillatus (CBS 448.86) (Figure1–2). Vu et al. (2019)
proposed a 99.6% similarity of ITS barcode for
a species taxonomic threshold. When comparing the
similarity of the ITS sequence, Z. penicillatus presented
less than 98.63% similarity to that of P. longispora, and
showed less than 94.3% similarity to that of P. cubensis
(KT279809, CBS 727.87, ex-living type, previously
known as Diploöspora longispora var. cubensis),
respectively. There were no available EF1-α and RPB2
sequences in GenBank. We did not compare the simi-
larity of EF1-α and RPB2 sequences. However,
P. penicillatus diers from the latter in having penicil-
late conidiophores and basipetal conidiogenesis.
Herein, we introduce a new genus, Zelopaecilomyces,
for the accommodation of P. penicillatus.
The taxonomic position of Paecilomyces was
revised and rened by phylogenetic analyses, habi-
tats, host range, etc. (Luangsa-Ard et al. 2004, 2005).
The entomopathogenic mesophilic species were
placed in the class Sordariomycetes belonging to
Hypocreales (Luangsa et al. 2004, 2005). Generally,
those taxa were placed in Isaria, which were accepted
by a new genus Samsoniella (Hypocreales,
Cordycipitaceae) currently (Mongkolsamrit et al.
2018). Our phylogenetic analyses presented that
Z. penicillatus (CBS 448.69, ex-type strain) was posi-
tioned in Pseudodiploösporeaceae (Figure 2), which
was owing to a higher similarity of the SSU and ITS
sequence between P. penicillatus and D. longispora.
However, previous phylogenetic studies have evi-
denced that the SSU and ITS sequence data alone
are insucient to provide good resolution in most
of the groups in Sordariomycetes(Hyde et al. 2020).
Morphologically, Z. penicillatus diers from
P. longispora by penicillate conidiophore, basipetal
conidiogenesis, and the shape and size of conidia
(Figure 5 and 6). Additionally, the divergence time
revealed that Z. penicillatus diverged from
P. longispora about 14 MYA (Figure 3). Tanney et al.
(2015) thought that P. longispora and Z. penicillatus
may be two extremes of a continuum, However, we
treat P. penicillatus as a distinct species other than
a synonym of D. longispora not only relying on mor-
phological dierences but also following the diver-
gence time.
Both P. longispora and Z. penicillatus were ori-
ginally isolated from decaying leaves and found on
12 J. SUN ET AL.
the rotten mushroom successively (Samson 1974;
Matsushima 1976; Castaneda 1987). He et al. (2017)
identied Z. penicillatus (as Paecilomyces penicilla-
tus) as the causing agent of the white mould dis-
ease of cultivated Morchella only relying on ITS
phylogenetic analysis but lacking morphological
evidence. Liu et al. (2019) reported P. longispora
(as D. longispora) infecting cultivated Morchella,
resulting in pileus rot but not oered the typical
morphological feature of P. longispora. The phylo-
genetic analyses in both Tanney et al. (2015) and
this study revealed that ITS and SSU are unable to
adequately distinguish D. longispora and
Z. penicillatus, but our study oered robust mor-
phological evidence on the taxonomy of
P. longispora and Z. penicillatus. Since
P. longispora has been reported as a serious fungal
pathogen (Hyde et al. 2017; Liu et al. 2018), reliably
taxonomic information will facilitate tracing the
origin and understanding of pathogenesis.
Acknowledgements
This research was supported by the Natural Science Foundation
of China (no. 32072645). The authors would like to thank Chun-
Li Li from the Institute of Microbiology, Chinese Academy of
Sciences, for their instructions on the sample process and
observations by SEM. The authors would like to thank Prof.
Liwei Zhou for his suggestions on phylogenetic analysis and
divergence time estimation. We also thank Prof. Rob Samson for
the permission to redraw the plates of Paecilomyces penicillatus.
Disclosure statement
No potential conict of interest was reported by the author(s).
Funding
This work was supported by the The Natural Science
Foundation of China [no. 32072645].
ORCID
Jingzu Sun http://orcid.org/0000-0003-1893-1869
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14 J. SUN ET AL.
... After 7 days, two patches (0.3 cm × 0.3 cm) of the fungal colony were fixed in 2.5% glutaraldehyde in 0.1 M phosphatebuffered saline (BPS, pH 7.2) at 4°C. Then, the samples were dehydrated and sputter-coated by following the method described by Sun et al. (2023). Samples were loaded on the SEM (SU8010, Hitachi, Tokyo, Japan) and observed and photographed. ...
... The ITS4/ITS5 primer pair is used for amplification of the internal transcribed spacer gene region (ITS; White et al., 1990), and the 983F/2218R primer pair is employed for amplification of the partial translation elongation factor 1-alpha gene region (TEF-1α; Carbone and Kohn, 1999). Each PCR reaction system followed the descriptions by Sun et al. (2023). The PCR products were sequenced by Beijing Tianyihuiyuan Bioscience and Technology. ...
... The ITS gene region performed well in determining Simplicillium (Zare et al., 2000;Nonaka et al., 2013;Wei et al., 2019). The translation elongation factor 1-alpha gene region (TEF-1α) was recommended as a secondary barcode for fungi (Mirhendi et al., 2015;Meyer et al., 2019;Pakshir et al., 2020), which also performed well in species identification, especially in the recognition of hypocrealean fungi (Wei et al., 2019;Chen et al., 2021;Sun et al., 2023). In this study, our phylogenetic analysis based on ITS and TEF-1α also demonstrates well the interspecific relationship of Simplicillium. ...
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Simplicillium species are widely distributed with a broad spectrum of hosts and substrates. Generally, these species are entomopathogenic or mycoparasitic. Notably, some isolates of Simplicillium lanosoniveum and Simplicillium obclavatum were obtained from human tissues. In this study, two fungi were isolated from the annular itchy patch of infected skin of a 46-year-old man with diabetes mellitus. Based on a combination of morphological characteristics and phylogenetic analysis, a novel species, Simplicillium sinense, was introduced herein. It morphologically differs from the remaining Simplicillium in the size of phialides and conidia. Additionally, it grows slowly on YPD at 37°C. Antimicrobial susceptibility testing presented that this fungus is resistant to most azole antifungals. Therefore, the diagnosis of tinea faciei was made, and after 2 weeks of being treated with oral terbinafine (250 mg, once a day) and topical terbinafine cream for 1 month, the rash was mainly resolved and no recurrence happened after 6 months of follow-up. Herein, Simplicillium sinense was introduced as a new fungal taxon. Meanwhile, a case of superficial infection caused by S. sinense was reported. So far, it is the third Simplicillium species obtained from human tissue. Meanwhile, terbinafine is recommended as the first-line antifungal treatment against Simplicillium infection.
... More current studies have focused on fungal diseases, such as stipe rot disease caused by the Fusarium incarnatum-F. equiseti species complex (Guo et al., 2016) and by Purpureocillium lilacinum (Masaphy, 2022), cobweb disease caused by Hypomyces/Cladobotryum species (Lan et al., 2020), white mold disease caused by Paecilomyces penicillatus (He et al., 2018;Yu et al., 2022), and pileus rot disease caused by Diploöspora longispora (He et al., 2018;Liu et al., 2018;Sun et al., 2023). However, studies on bacterial diseases of morels are relatively scarce. ...
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Morel mushroom ( Morchella spp.) is a rare edible and medicinal fungus distributed worldwide. It is highly desired by the majority of consumers. Bacterial diseases have been commonly observed during artificial cultivation of Morchella sextelata . Bacterial pathogens spread rapidly and cause a wide range of infections, severely affecting the yield and quality of M. sextelata . In this study, two strains of bacterial pathogens, named M-B and M-5, were isolated, cultured, and purified from the tissues of the infected M. sextelata . Koch’s postulates were used to determine the pathogenicity of bacteria affecting M. sextelata , and the pathogens were identified through morphological observation, physiological and biochemical analyses, and 16S rRNA gene sequence analysis. Subsequently, the effect of temperature on the growth of pathogenic bacteria, the inhibitory effect of the bacteria on M. sextelata on plates, and the changes in mycelial morphology of M. sextelata mycelium were analyzed when M. sextelata mycelium was double-cultured with pathogenic bacteria on plates. The results revealed that M-B was Pseudomonas chlororaphis subsp. aureofaciens and M-5 was Bacillus subtilis . Strain M-B started to multiply at 10–15°C, and strain M-5 started at 15–20°C. On the plates, the pathogenic bacteria also produced significant inhibition of M. sextelata mycelium, and the observation of mycelial morphology under the scanning electron microscopy revealed that the inhibited mycelium underwent obvious drying and crumpling, and the healthy mycelium were more plump. Thus, this study clarified the pathogens, optimal growth environment, and characteristics of M. sextelata bacterial diseases, thereby providing valuable basic data for the disease prevention and control of Morchella production.
... Typical diseases include stipe rot disease caused by the Fusarium incarnatum -F. equiseti species complex (Guo et al., 2016), pileus rot disease caused by Diploöspora longispora (He et al., 2018;Shi et al., 2022;Sun et al., 2023), white mold disease caused by Paecilomyces penicillatus (He et al., 2017;Fu et al., 2022), cobweb disease caused by Cladobotryum protrusum (Lan et al., 2020), white mildew disease caused by Aspergillus sp. . To the best of our knowledge, none of these soil-borne diseases has been proven to be directly related to the continuous cropping of morel. ...
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Morels (Morchella spp.) are highly prized and popular edible mushrooms. The outdoor cultivation of morels in China first developed at the beginning of the 21st century. Several species, such as Morchella sextelata, M. eximia, and M. importuna, have been commercially cultivated in greenhouses. However, the detriments and obstacles associated with continuous cropping have become increasingly serious, reducing yields and even leading to a complete lack of fructification. It has been reported that the obstacles encountered with continuous morel cropping may be related to changes in the soil microbial community. To study the effect of dazomet treatment on the cultivation of morel under continuous cropping, soil was fumigated with dazomet before morel sowing. Alpha diversity and beta diversity analysis results showed that dazomet treatment altered the microbial communities in continuous cropping soil, which decreased the relative abundance of soil-borne fungal pathogens, including Paecilomyces, Trichoderma, Fusarium, Penicillium, and Acremonium, increased the relative abundance of beneficial soil bacteria, including Bacillius and Pseudomonas. In addition, the dazomet treatment significantly increased the relative abundance of morel mycelia in the soil and significantly improved morel yield under continuous cropping. These results verified the relationship between the obstacles associated with continuous cropping in morels and the soil microbial community and elucidated the mechanism by which the obstacle is alleviated when using dazomet treatment.
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Mushrooms are important organisms because of their human nutritional and medicinal value. With the expansion of the cultivation of edible mushrooms, fungal diseases have become a major problem in limiting their production. Numerous fungi can cause mushroom deformation or rots. In this publication we report on fungal diseases found during Morchella cultivation in China, with emphasis on morphology and phylogeny to characterise species. The key findings include 1) establishment of a new family Albomorchellophilaceae in Hypocreales, and a novel monotypic genus Albomorchellophila with the type species A. morchellae. Divergence time estimates indicate that Albomorchellophilaceae diverged from its sister family Calcarisporiaceae at ca. 105 (92–120) MYA; 2) the phylogeny and morphology of the family Pseudodiploosporeaceae (Hypocreales) is revised. The family contains a single genus Pseudodiploospora. Intraspecific genetic analyses of Pseudodiploospora longispora reveals significant base differences within strains, especially in the regions of protein-coding genes RPB 2 and TEF; 3) four fungicolous taxa, i.e., Cylindrodendrum alicantinum, Hypomyces aurantius, Hypomyces rosellus, and Trichothecium roseum, are reported as putative pathogens on cultivated morels for the first time. In addition, the previously reported pathogens of morels, Clonostachys rosea, Clonostachys solani, Hypomyces odoratus, and Pseudodiploospora longispora are also detailed in their symptoms and morphology; 4) the phylogeny and morphology of “Zelopaecilomyces” previously placed within Pseudodiploosporeaceae are re-assessed. “Zelopaecilomyces” is proved to be introduced through a chimerism of gene fragments sourced from two distinct organisms. Consequently, it is recommended that “Zelopaecilomyces” should not be recognised due to the mixed up molecular data in phylogeny and a lack of support from morphological evidence. Furthermore, this study discusses the voucher specimen Paecilomyces penicillatus (CBS 448.69), which may contain two mixed taxa, i.e., Pseudodiploospora longispora and a member of Penicillium. Publications on pathogenic fungi of cultivated mushrooms is sporadically, which leads to a lack of understanding of causal agents. As a follow up to the diseases of morel cultivation, we also review the fungal diseases of cultivated mushrooms reported over the last four decades. More than 130 pathogens affect the growth and development of the main cultivated mushrooms. The taxonomic diversity of these pathogens is high, distributed in 58 genera, 40 families, 20 orders, 12 classes and six phyla. The host infected are from Ascomycota to Basidiomycota, mainly being reported from Agaricus bisporus, Cordyceps militaris, Morchella spp., and Pleurotus spp. This study not only enriches our current knowledge on the diversity of pathogens of cultivated mushrooms, especially morels, but also recognizes the importance of some taxa as potential pathogens. Taxonomic investigation and accurate identification are initial and key steps to understanding pathogen-mushroom interactions, and will result in better disease management strategies in the mushroom industry.
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The cultivation of morel mushrooms (Morchella spp.) outdoors or in controlled indoor systems is a relatively new practice, and infections are beginning to be observed. Infection of indoor-cultivated Morchella rufobrunnea initials (primordia) occurred at our research facilities in Israel. The mushroom initials turned brown, were covered with a dense white mycelium of a foreign fungus and were disintegrated soon after. The isolation of a fungal contaminant from the infected mushroom revealed small colonies with a pinkish spore zone on potato dextrose agar medium. Molecular identification using partial large subunit 28S ribosomal DNA and rRNA internal transcribed spacer sequences identified the fungus as Purpureocillium lilacinum. Inoculation of Morchella colony on agar plat with the isolated fungus caused browning and inhibition of mycelial growth. Inoculation of a healthy primordium with P. lilacinum spores resulted in its browning and deterioration. This is the first report of an infection of indoor-cultivated mushroom and the first showing P. lilacinum as a pathogen of morels.
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