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Histone Lysine Methylation Modification and Its Role in Vascular Calcification

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Frontiers in Endocrinology
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Histone methylation is an epigenetic change mediated by histone methyltransferase, and has been connected to the beginning and progression of several diseases. The most common ailments that affect the elderly are cardiovascular and cerebrovascular disorders. They are the leading causes of death, and their incidence is linked to vascular calcification (VC). The key mechanism of VC is the transformation of vascular smooth muscle cells (VSMCs) into osteoblast-like phenotypes, which is a highly adjustable process involving a variety of complex pathophysiological processes, such as metabolic abnormalities, apoptosis, oxidative stress and signalling pathways. Many researchers have investigated the mechanism of VC and related targets for the prevention and treatment of cardiovascular and cerebrovascular diseases. Their findings revealed that histone lysine methylation modification may play a key role in the various stages of VC. As a result, a thorough examination of the role and mechanism of lysine methylation modification in physiological and pathological states is critical, not only for identifying specific molecular markers of VC and new therapeutic targets, but also for directing the development of new related drugs. Finally, we provide this review to discover the association between histone methylation modification and VC, as well as diverse approaches with which to investigate the pathophysiology of VC and prospective treatment possibilities.
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Histone Lysine Methylation
Modication and Its Role in
Vascular Calcication
Ye-Chi Cao
1
, Su-Kang Shan
1
, Bei Guo
1
, Chang-Chun Li
1
, Fu-Xing-Zi Li
1
,
Ming-Hui Zheng
1
, Qiu-Shuang Xu
1
, Yi Wang
1
, Li-Min Lei
1
, Ke-Xin Tang
1
,
Wen-Lu Ou-Yang
1
, Jia-Yue Duan
1
, Yun-Yun Wu
1
, Muhammad Hasnain Ehsan Ullah
1
,
Zhi-Ang Zhou
2
, Feng Xu
1
, Xiao Lin
3
, Feng Wu
4
, Xiao-Bo Liao
2
and Ling-Qing Yuan
1
*
1
National Clinical Research Center for Metabolic Diseases, Department of Metabolism and Endocrinology, The Second
Xiangya Hospital, Central South University, Changsha, China,
2
Department of Cardiovascular Surgery, The Second Xiangya
Hospital, Central South University, Changsha, China,
3
Department of Radiology, The Second Xiangya Hospital, Central
South University, Changsha, China,
4
Department of Pathology, The Second Xiangya Hospital, Central South University,
Changsha, China
Histone methylation is an epigenetic change mediated by histone methyltransferase, and
has been connected to the beginning and progression of several diseases. The most
common ailments that affect the elderly are cardiovascular and cerebrovascular disorders.
They are the leading causes of death, and their incidence is linked to vascular calcication
(VC). The key mechanism of VC is the transformation of vascular smooth muscle cells
(VSMCs) into osteoblast-like phenotypes, which is a highly adjustable process involving a
variety of complex pathophysiological processes, such as metabolic abnormalities,
apoptosis, oxidative stress and signalling pathways. Many researchers have
investigated the mechanism of VC and related targets for the prevention and treatment
of cardiovascular and cerebrovascular diseases. Their ndings revealed that histone lysine
methylation modication may play a key role in the various stages of VC. As a result, a
thorough examination of the role and mechanism of lysine methylation modication in
physiological and pathological states is critical, not only for identifying specic molecular
markers of VC and new therapeutic targets, but also for directing the development of new
related drugs. Finally, we provide this review to discover the association between histone
methylation modication and VC, as well as diverse approaches with which to investigate
the pathophysiology of VC and prospective treatment possibilities.
Keywords: epigene tics modication, histone lysine methyl ation, histone lysine methyltransfe rases (HKMTs),
vascular calcication, signalling pathways
1 INTRODUCTION
Vascular calcication (VC) is a pathological condition prevalent in persons with atherosclerosis,
hypertension, chronic kidney disease and diabetic vascular disease. It presents a substantial risk
factor of cardiovascular disease (CVD) occurrence and death, as well as an independent predictor of
CVD occurrence (1). According to the location of calcied plaque formation and development,
Frontiers in Endocrinology | www.frontiersin.org June 2022 | Volume 13 | Article 8637081
Edited by:
Valentina Perissi,
Boston University, United States
Reviewed by:
Xiaoqiang Tang,
Sichuan University, China
Tao Yang,
Van Andel Institute, United States
*Correspondence:
Ling-Qing Yuan
allenylq@csu.edu.cn
Specialty section:
This article was submitted to
Cellular Endocrinology,
a section of the journal
Frontiers in Endocrinology
Received: 27 January 2022
Accepted: 06 May 2022
Published: 16 June 2022
Citation:
Cao Y-C, Shan S-K, Guo B, Li C-C,
Li F-X-Z, Zheng M-H, Xu Q-S,
Wang Y-L, Lei L-M, Tang K-X,
Ou-Yang W, Duan J-Y, Wu Y-Y,
Ullah MHE, Zhou Z-A, Xu F, Lin X,
Wu F, Liao X-B and Yuan L-Q (2022)
Histone Lysine Methylation
Modication and Its Role
in Vascular Calcication.
Front. Endocrinol. 13:863708.
doi: 10.3389/fendo.2022.863708
REVIEW
published: 16 June 2022
doi: 10.3389/fendo.2022.863708
VCis classied as either intimal calcication or medial
calcication (2). Intimal calcication is evident in
atherosclerotic plaques (3), where vascular cells undergo
metamorphosis and functional changes that encourage the
creation of calcium and phosphorus crystals in the lipid
necrosis nuclei of atheromatous plaques. Medial calcication is
seen in distal arteries (4), which can cause vascular compliance to
decrease and pulse pressure to rise, resulting in cardiac
insufciency. Both forms of calcication can occur individually
or simultaneously in patients with CKD. VC is primarily caused
by phenotypic changes of vascular smooth muscle cells
(VSMCs), a highly changeable process analogous to bone
development. VC is caused by a variety of factors, including
oxidative stress, inammatory response, autophagy (5), vesicle
production, vascular injury, high calcium and phosphorus levels,
and a lack of calcication inhibitory factors, all of which
contribute to mineral deposition in the extracellular matrix
and to VC (6,7). Various studies have been carried out to
understand the intricate molecular pathways that govern gene
expression and protein function, in order to slow down the
process of VC and identify appropriate treatments for
cardiovascular disease.
Post-translational regulations are covalent modications that
occur after protein synthesis and are important targets for the
regulation of signalling pathways. Histone lysine methylation
modications are one of these, mediated by histone lysine
methyltransferases (HKMTs), which may operate on both
histones and non-histones and play important roles in many
biological processes through heterochromatin formation,
transcriptional control, and so forth. A range of pathological
conditions can be caused by abnormalities in lysine methylation
modication, and studies have revealed that lysine methylation
modication is intimately linked to VC formation
and development.
This review summarizes well-known mechanisms of VC,
followed by recent updates regarding lysine methylation
associated VC pathogenesis and related pathways. Further
studies are needed to uncover the complicated interactions
during lysine methylation modication and to achieve a
breakthrough in therapy for VC-associated diseases. These
complex and cross-talking mechanisms closely support the
postulate that VC is affected by histone lysine methylation.
Understanding specic VC pathologies associated with
HKMTs and exploring the potential application of epigenetics
to treatment would be of profound signicance.
2 MECHANISMS OF VC
VSMCs exist in and can interconvert between two phenotypic
states, namely the contractile (differentiation) and synthetic
(de-differentiation) states (8). The change from a contractile to
a synthetic state, which is a pivotal phase at the onset of severe
vascular proliferative diseases, results in increased VSMC
proliferation and migration, extracellular matrix secretion and
synthesis, and the formation of neointimal membranes. Bone-
related genes, such as bone morphogenetic proteins (BMPs),
runt-related transcription factor 2 (Runx2) (8), and osteocalcin
can have increased expression followed by transition. Abnormal
calcium and phosphorus metabolism, inammation and
oxidative stress, pro- and anti-calcication factor imbalance,
and autophagy, all of which interact to inuence the formation
and progression of VC, have been identied as the etiology of
VC. In short, multiple factors that contribute to alterations of
body homeostasis have been shown to be strongly associated
with the onset and progression of VC.
2.1 Abnormal Metabolism of Calcium
and Phosphorus
Abnormal mineral homeostasis caused by elevated calcium and
phosphorus concentrations can mediate VC. High phosphate in
serum leads to VSMC calcication in vitro (9) and to coronary
artery calcication in human (10), suggesting that phosphate
plays a critical role in the pathophysiology of VC, and the degree
of calcication is dose-dependent on phosphorus concentration.
Meanwhile, it is worth noting that under conditions of normal
phosphorus concentration, the degree of VC in VSMCs can be
upregulated when the calcium concentration increases (11), and
high levels of calcium can lead to the formation and development
of hydroxyapatite crystals in the VSMCs. High phosphate
upregulates Pit1 to raise intracellular levels of inorganic
phosphate, followed by downregulation of calcication
inhibitors, release of extracellular vesicles, remodelling of the
extracellular matrix and apoptosis of VSMCs (9). Eventually,
various signalling pathways trigger phosphate-induced osteo-/
chondrogenic transdifferentiation of VSMCs, leading to VC, and
the main feature of the osteogenic signalling pathway in VC is
the upregulation of Runt-related transcription factor 2 (Runx 2).
In addition, previous studies showed that high extracellular
phosphate levels induced apoptosis and necrosis of VSMCs,
and so apoptotic bodies released from VSMCs could serve as a
nidus for calcium phosphate deposition (12). Briey, the
disturbance in calcium and phosphorus metabolism has a
relatively direct role in the progression of VC, and attention to
the physiopathological processes associated with calcium and
phosphorus metabolism may provide direction for the treatment
and prevention of VC.
2.2 Inammation and Oxidative Stress
The inammatory response pathway is an important venue
associated with pathogenesis of VSMCs calcication (13), and
the progression of VC is aided by many inammatory cells and
factors. Interleukin-1 beta (IL-1b) stimulates VSMC calcication
in vitro (14). Interleukin-6 (IL-6)/soluble interleukin-6 receptor
(sIL-6R) complexes induces VSMC transformation into an
osteoblast phenotype (15). IL-11 plays an important role in
VSMC phenotype switching and vascular inammation (16).
When macrophages are exposed to calcium or phosphate
nanocrystals, they release inducible nitric oxide synthase
(iNOS) and tumour necrosis factor (TNF), implying that
inammatory immune cells are recruited to the calcication
site (17). According to previous work, macrophages from
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Frontiers in Endocrinology | www.frontiersin.org June 2022 | Volume 13 | Article 8637082
various subsets can undergo polarity drift, meaning that
macrophages from different subsets can turn into one another.
For example, under specic conditions, M1 and M2 may bio-
transform into each other. Macrophages can promote VC
through diverse mechanisms, such as the release of reactive
oxygen species, pro-inammatory cytokines and matrix
vesicles (MVs) (18). This process is regulated by cartilage
oligomeric matrix protein (COMP), which can polarize
macrophages into M1 phenotypes (i.e., they tend to be
osteogenic phenotypes), and inhibits macrophages
differentiation into M2 and osteoclast-like cells (19). M1 can
directly release oncostatin M (OSM) to promote the
differentiation of VSMCs into osteoblastic phenotypes through
the JAK3-STAT3 pathway (20), whereas M2 can secrete anti-
inammatory factors, as well as phagocytize necrotic fragments
and apoptotic cells, to prevent the formation of calcied
nucleation sites (21). However, the persistent state of chronic
inammation caused by M1 may also impair the normal
development and transformation of VSMCs into osteoblasts.
The macrophages can produce BMP2 as well as Runx2, and this
ability can be maintained in aortic plaques (18). This process
reveals a novel therapy avenue in which controlling the M1-to-
M2 transition and reducing inammation may help to reduce
VC. Researchers found that inhibition of Runx2 regulation
mediates the anti-calcication effect by inhibiting the
inammation-associated NF-kBpathway(22), suggesting a
strong link between inammation and calcication in the
pathogenesis of VC. Thus, these discoveries indicate a strong
causal relationship between inammation and VC, and the
research of VC should be accompanied by attention to
inammatory indicators, suggesting that certain inammatory
indicators can be used as tools to evaluate VC.
2.3 VC Activator
2.3.1 FGF23
FGF23 is produced by osteocytes, which have been found to be
one of the most powerful phosphomodulators (23)andan
important inducer of VC. It acts in collaboration with the
transmembrane protein Klotho as a cofactor, primarily
regulating the metabolic balance of blood phosphorus and
vitamin D in the body (24). Klotho has been identied as an
anti-aging gene (25) and Klotho protein has anti-aging and
cardiovascular protective effects. Lim et al. discovered that
human VSMCs express Klotho protein (26). They also
discovered that Klotho expression was signicantly reduced
and Runx2 was increased in vascular tissues, and that Klotho
protein inhibited the transdifferentiation of VSMCs into
osteoblasts by inhibiting phosphorus uptake by cells. Klotho
deciency can promote the osteogenic phenotype of VSMCs by
regulating phosphorus uptake in VSMCs, through the induction
of the sodium-phosphorus cotransporter Pit1/2 (27). Numerous
experiments have shown that Klotho deciency is an important
causal factor in VC. Elevated levels of Klotho may regulate
phosphorus and calcium homeostasis in vivo, either directly in
the kidney and vascular cells or indirectly (28). The effect of
Klotho on calcication may be associated with the classic Wnt/-
catenin pathway (29,30), and a study involving stem cells
demonstrated Klotho may act as a Wnt antagonist and
immunoprecipitates with a number of Wnt isoforms, including
Wnt1, Wnt3, Wnt4 and Wnt5a (31). Hum et al. found that
upregulation of Klotho alleviated VC (32); for example,
intermedinl-53, a member of the adrenomedullin family, has
been shown to reduce the degree of VC by activating the cyclic
adenosine monophosphate/protein kinase A (cAMP/PKA)
signalling pathway (33). However, Lindberg (34)couldnot
detect mRNA expression of FGF23 or its coreceptor, Klotho, in
human or mouse VSMCs, nor normal or calcied mouse aorta.
There still exists controversy as to whether VSMCs express
Klotho, and whether Klotho is involved in the development
and progression of VC. Therefore, insights into FGF23 may
provide a new indication for the development of VC, which may
provide a direction for treatment and prevention, while a
complete understanding of this pathway and other roles in VC
remain to be conrmed.
2.3.2 BMP
BMPs are powerful osteogenic differentiation activators, and
were discovered in calcied VSMCs. BMP-2 and BMP-4, in
particular, are intimately linked to VC among BMP family
members. BMP-2 may promote VC by activating muscle
segment homeobox2 (MSX2) and inhibiting matrix Gla protein
(MGP), and may also promote apoptosis of VSMCs (35). BMP-2
and MSX2 can activate the Wnt/b-catenin pathway, one of the
major osteo-inductive signalling pathways in VC, and then
induce VSMC calcication (36). Nuclear factor-kappa B ligand
(RANKL) promotes VC by inducing the release of BMP-2 from
human aortic endothelial cells, which, in turn, acts in a paracrine
manner on the adjacent human aortic smooth muscle cells to
increase osteoblastic activity (37). In vascular media, BMP2 was
observed to act through the type III sodium-dependent
phosphate cotransporter, Pit1, and downregulate microRNA-
30b and 30c (38), resulting in an increased expression of Runx2,
calcium deposition, and mineralization to accelerate medial or
intimal calcication. BMP2 signalling is involved in the
maintenance of the contractile phenotype and has been shown
to inhibit VSMCs proliferation and neointimal hyperplasia (39).
Serum BMP4 levels are higher in patients with chronic renal
disease and coronary artery disease, and they are independently
and positively linked with coronary artery calcication indices
(40). BMP-4 may participate in leptin-induced calcication of
VSMCs via ERK1/2/RANKL/BMP-4 and PI3K/Akt/RANKL/
BMP-4 signalling pathways (41,42). In addition, BMP4 can
promote foam cell production, inhibit lipid carrier expression
and lipid export, and contribute to atherosclerosis through the
BMPR1/2/Smad1/5/8 signalling pathway (43). These discoveries
systematically and clearly illustrate the role of BMP as an
activator in VC, which affects the onset and progression of
the disease.
In addition to the above two activators of calcication that are
more associated with histone lysine methylation modications,
there exist many other risk factors that promote calcication,
including osteocalcin (OC) (44), alkaline phosphatase
Cao et al. Histone Lysine Methylation Modication
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(ALP) (45), osteopontin (OPN) (46), PTH (47) and Cathepsin K
(48). Together, these activators of calcication are involved in
key aspects of the VC signalling pathway and focusing on these
activators to nd HKMTs which produce inhibitory effects is an
important therapeutic direction for the alleviation and treatment
of VC.
2.4 VC Inhibitors
As the external environment changes, the corresponding
decrease in calcication inhibitors and functional deciencies
can exacerbate VC. There are natural inhibitors of calcication
including osteoprotegerin (OPG) (49), matrix Gla protein
(MGP) (50), fetuin-A (Fet-A) (51), BMP7 (35)and
pyrophosphate (PPi) (52). Paloian identied a novel protein
involved in the bone-vascular axis, osteosclerin (OPN), which is
mainly secreted by osteoblasts and chondrocytes. As a specic
and regulated negative regulator of the Wnt pathway,
osteosclerin plays a protective role in the development of VC
(53). These ndings about VC inhibitors provide some directions
for the identication of new therapeutic targets, suggesting
analysis of the differential expression of these inhibitors may
provide novel outlooks on diagnosis and therapy.
2.5 Disturbed Autophagy Regulation
Autophagy is a cell protective mechanism occurring through
removal of mistake proteins, damaged organelles or unwanted
metabolites (54), which is vital to maintain normal VSMC
function (5557). However, excessively activated autophagy
can induce autophagic death of VSMCs (58). For example,
hyperphosphatemia can induce calcication by promoting
osteogenic transformation of VSMCs through activating
abnormal autophagy (54,59). Cell death by apoptosis or
necrosis leads to the release of apoptotic bodies, or necrotic
debris, which may act as nucleation sites for calcium phosphate
deposition and further aggravate calcication. In contrast,
research showed that autophagy could counteract against ROS-
induced VC at high Pi concentrations in vitro (59). In addition,
emerging evidences indicates that autophagy also regulates
extracellular matrix homeostasis and mitigates VC process
(60). To summarise, whether autophagy is a protective or
harmful mechanism in VC pathology remains controversial.
The idea of modulating autophagy offers an attractive direction
to treat or prevent VC. For example, oestrogen-induced
autophagy inhibits the osteogenic differentiation of VSMCs
and arterial calcication via the ERapathway (57). Therefore,
further studies are required to investigate autophagy and their
signicance in pathophysiology of VC.
3 HISTONE LYSINE METHYLATION
In eukaryotes the nucleosome is the main structural element of
chromatin, which consists of DNA and a core histone octamer
including two copies of H2A, H2B, H3 and H4, with histone H1
acting as a junction between the nucleosome and DNA (61).
Histone acetyltransferase, histone methyltransferase and histone
phosphotransferase can all produce post-translational
modications, of which histone lysine methylation is one of
the most characterized post-translational modication. With
more clues uncovered, lysine methylation modication plays a
signicant role in the progress of VC. Mechanistically speaking,
only lysine and arginine were thought to be the locations of
histone methyltransferase action, based on early investigations
on a vast number of protein sequences, and the N-terminal tails
of histone residues can be methylated once or repeatedly,
resulting in monomethylation, dimethylation or trimethylation.
HKMTs are a family of proteins that include the SET domain,
named after the rst three genes that expressed it: Su(var)3-9,
enhancer of zeste [E(z)] and trithorax (trx) (62). Apart from
Dot1 enzyme (63), which methylates H3K79, all HKMTs have a
SET domain. Histone lysine methylation is directly linked to
chromatin concentration and gene silencing (64), and can play a
role in physiological and pathological states via a variety of
pathways. Thus, HKMTs can be summarized into two categories
based on their different functions on the substrate, one activating
and the other inhibiting. H3K4, K26, K36, K79 and H4K12
methylations are mostly engaged in gene activation, whereas
H3K9, K27, K56, H4K5, and K20 methylations are involved in
gene silencing (Figure 1).
4 HKMTS SUBSTRATES LYSINE FROM
HISTONE TO CONTROL VC
4.1 Transcriptional Activation-Associated
Histone Lysine Methylation Modications
in VC
4.1.1 H3K4 Locus Methylation and its Potential Role
in Facilitating VC
H3K4 methylation is recognized as a marker of gene
transcriptional activation. H3K4 methyltransferases, also
known as MLL (mixed lineage leukaemia) family proteins,
include MLLl, MLL2, MLL3, MLLL4, SET1A, SET1B, SETD7,
SMYD2 and SMYD3. SMYD2 methylates histone H3K4 and
H3K36 with the SET-dependent manner. TGF -binduces
increased deposition of the extracellular matrix when the level
of H3K4me methylated by SMYD2 increases (65), and TGF-b1
or BMP2-stimulated valvular endothelial cells transform into
osteoblast-like cells by increasing ALP expression, eventually
resulting in VC (66). SMYD3 catalyzes dimethylation and
trimethylation of H3K4 to form H3K4me2 and H3K4me3 near
the promoter regions of target genes, which usually serve as
transcriptional activators involved in promoting cell growth (67).
SMYD3 promotes vascular cellular senescence by binding to the
promoter region of p21 gene, implicated in cell cycle arrest and
cellular senescence via H3K4 methylation (68). Other research
also shows that SMYD3 can bound to promotors of PARP16
through increased H3K4me3 levels, to mediate vascular
senescence and ER stress existing in cell models (69). Research
on SMYD3 in VC has not yet been carried out, but there are
many common points of contact between vascular senescence
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Frontiers in Endocrinology | www.frontiersin.org June 2022 | Volume 13 | Article 8637084
and calcication in terms of their mechanisms, which can
provide a novel direction for the study of VC. Increasing
evidence suggests that SETD7 plays a critical role in a number
of physiological and pathological processes, such as metabolism,
immunity, vascular pathology and cancer (70). Hypoxia-
inducible factor 1a(HIF-1a) is a transcription factor
upregulated by hypoxia, and SETD7 can inhibit its
transcriptional activity by methylating H3K4 (71). HIF-1acan
upregulate Runx2 to induce VC (72) and plays a critical role in
Pi-induced VC (73). However, our understanding of the
relationship between H3K4 methylation and VC is
rudimentary and is based on the association of other vascular
pathological alterations and VC in previous studies. In
conclusion, H3K4 methylation contributes to an enhanced
interpretation of VSMCs physiology and pathology.
Current studies on MLL family methylation modications are
mainly in the tumour area, with few reports investigating the VC
area. It is noteworthy that MLL1 facilitates the proliferation of
myoblastsbyepigeneticallyregulatingMyf5via mediating
H3K4me3 on its promoter (74). Also, SETD7 has been shown
to be associated with transcriptional activation of myogenic
differentiation genes, such as MYOD, MYOGENIN, MHC and
MCK, via H3K4 methylation (75), providing an insight into the
mechanisms of HKMTs in VSMC pathophysiology. These
discoveries further support the potential role of HKMTs acting
on H3K4 in VC progression.
4.1.2 H3K36 Locus Methylation and its Potential
Associated Role in VC
H3K36 plays an important role in transcriptional elongation, and
its methylation modications may be seen in abundance in the
coding areas of transcriptionally active genes (76). H3K36me1 is
considered an intermediate modication without any signicant
role, whereas H3K36me2 and H3K36me3 each play a major role
in histone modications (77). Zhou et al. revealed that NSD2
could serve a new function in the etiology of pulmonary arterial
hypertension by elevating the H3K36me2 level, which regulates
trehalose metabolism and autophagy (78). According to a
genome-wide investigation, DNMT3A binding and activity co-
localize with H3K36me2 at non-coding areas of euchromatin,
and NSD1-mediated H3K36me2 is required for the recruitment
of DNMT3A and the maintenance of DNA methylation at
intergenic regions, showing the intrinsic interactions of histone
and DNA in epigenetic modications (79). SMYD2 inhibits
macrophage activation by facilitating H3K36 dimethylation at
TNF and IL6 promoters, and increased SMYD2 expression
decreases the production of pro-inammatory cytokines
including IL-6 and TNF. Then, as a result of enhanced TGF-
production and reduced IL-6 release, macrophages with elevated
SMYD2 expression promote regulatory T cell differentiation
(80). Although no direct links between VC and H3K36
methylation modications have been discovered, several
studies in other diseases have shown that H3K36 methylation
modications are involved in the regulation of VC risk factors,
suggesting that there may exist potential mechanisms for
researchers to investigate.
4.1.3 H3K79 Locus Methylation and its Potential
Associated Role in VC
H3K79me is a marker of activated chromosomes and is
signicantly expressed in areas with high gene transcriptional
activity (81). Disruptor of telomeric silencing 1-like (DOT1L) is a
methyltransferase that acts on lysine 79 of histone H3 (H3K79).
In addition to regulating transcriptional activation of certain
genes, DOT1L is also involved in DNA repair, cell differentiation,
and cell cycle regulation (82,83). In the G1 phase, DOT1L-
decient cells experience irreversible cell cycle arrest, resulting in
premature senescence (74). Increased levels of SIRT1 caused by
FIGURE 1 | Histones and the DNA wound around the histones together constitute the nucleosomes, which are the main structural elements of chromatin, mainly
composed of H2A, H2B, H3 and H4. Histone lysine methylation occurs mainly at H3 and H4, of which six sites are currently well studied. This gure summarizes the
role of lysine methylation activation or inhibition at these six sites and the frequently regulated enzymes for them. Created with BioRender.com.
Cao et al. Histone Lysine Methylation Modication
Frontiers in Endocrinology | www.frontiersin.org June 2022 | Volume 13 | Article 8637085
AMPK activation can lead to an increase in H3K79me3 via
DOT1L upregulation, and then to H3K79me3-induced up-
regulation of SIRT3 levels, enhancing mitochondrial biogenesis
function as well as delaying vascular senescence (84). Vascular
senescence and VC have many common contributors to the
mechanism, and this has given researchers new ideas as to
whether H3K79 methylation plays a similar role in VC. In a
nutshell, these results present the probably function of H3K79
associated enzymes in VC.
4.2 Transcriptional Repression-Associated
Histone Lysine Methylation Modications
in VC
4.2.1 H3K9 Locus MethylationAssociated Protective
Mechanisms of VC
H3K9 methylation plays an important role in X-chromosome
silencing, heterochromatin formation, DNA methylation and
transcriptional regulation. Researchers have conrmed that
methylation of H3K9 was signicantly reduced in
atherosclerotic plaques in SMCs and inammatory cells (85),
which illustrates the important role of H3K9 methylation in the
activation of SMCs in atherosclerosis and macrophages. G9a,
SUV39H2, SETDB1 and SUV39H1 are the primary
methyltransferases at this locus. G9a is the main euchromatin
H3K9 methyltransferase, catalyzing monomethylation and
dimethylation of H3K9 (86) in euchromatic regions, and is
involved in trimethylation of H3K9 (87). The methylation of
H3K9 by G9a is mostly associated with gene silencing. G9a can
epigenetically silence Klotho expression by monomethylating
H3K9 on the Klotho promoter (88), whereas silencing G9a has
the reverse effect, apparently reversing the repressive effect of
Klotho expression (89). As a result, inhibiting G9a expression
can control the development of VC via FGF23/Klotho axis,
which may provide an important therapeutic strategy for VC
and deserves consideration. Vascular inammation is an
important contributor to the development of VC, and
SUV39H1 exerts anti-inammatory effects in the vascular
inammatory response by inhibiting the transcription of
downstream target genes, such as NOS (90), and modulating
the NF-kB signalling pathway (91). Whether or not this role in
inhibiting the development of inammation delays VC deserves
further investigation. Therefore, future studies are required to
explore these mechanisms in detail. As more studies are
conducted, targeted therapies aimed at H3K9 methylation may
provide clinicians with a new therapy to attenuate
cardiovascular diseases.
4.2.2 H3K27 Locus MethylationAssociated
Protective Mechanisms of VC
H3K27 is associated with the transcriptional repression of genes
and can result in the inactivation of X-chromosomes (92). The
results of several studies suggest that the overall level of
H3K27me3 modication is reduced in VSMCs containing
atherosclerotic plaques (85,93). EZH2 is regarded as a
transcriptional suppressor that targets genes to alter cell
biological behaviour, by generally silencing the expression of
thetargetgene(94). EZH2 acts on H3K27 and catalyzes
methylation to form H3K27me3, which affects chromatin
conguration and genome stability. In addition to generating
H3K27me3, EZH2 can also recruit DNA methyltransferase 1
(DNMT1) (95) in the promoter region of target genes to directly
silence their expression, and DNA damage can, to a certain
extent, promote VC (96). Several studies have conrmed that
EZH2 expression is abnormally elevated in cancer tissues and is
positively correlated with the degree of malignancy of cancer
(97). Apart from functioning in cancer, EZH2 was also involved
in several signalling pathway modulations, including playing a
negative regulatory role in the process of muscle cell
differentiation and the pathophysiologic processes of VC (98).
EZH2 plays a critical role in the differentiation of skeletal muscle
cells in myoblast and myosatellite cells through miR-101a, which
promotes skeletal muscle cell differentiation directly through
EZH2 (99), instead of the terminal stage of differentiation (100).
Reduced EZH2 expression increases expression of ATG5 and
ATG7 and activates the MEKERK1/2 signalling pathway, which
induces excessive autophagosome formation and then leads to
VSMC loss (101). EZH2 promotes triple methylation of H3K27
in the promoter region of ATP-binding cassette transporter A1
gene and represses its transcriptional expression, which is
associated with atherosclerosis pathology and ultimately leads
to the appearance of VC. Han et al. discovered that H3K27me3
catalyzed by EZH2 was abundant in the promoter region of the
Klotho gene, due to directly binding to the Klotho promoter, and
suppressed Klotho gene expression (102) which also leads to VC.
H3K37 methylation changes can act on macrophages to promote
the process of VC, in addition to inuencing the phenotypic
alteration of VSMCs. Increased H3K27me3 levels on the
promoter of nuclear factor of activated T cells type c-1
(NFATc-1) causes epigenetic impairment of the NFATc-1
gene, resulting in macrophages in the vicinity of calcium
deposits being phenotypically decient and unable to resorb
calcication (103). The methylation modication H3K27 has
been shown to be a risk promoter for VC, and considering
H3K27 as a target for inhibition of methylation modication or
demethylation of H3K27me3 will provide new ideas for the
alleviation and treatment of VC.
4.2.3 H4K20 Locus MethylationAssociated
Protective Mechanisms of VC
H4K20 methylation plays key roles in DNA replication, gene
damage repair, and silenced heterochromatin (104), which was
once thought to be a methyltransferase target for gene silencing.
However, recent research suggests that H4K20-associated
methylation may play a dual roleinepigeneticregulation
(105). H4K20me1 is linked to transcriptional activity and
controls chromatin condensation, whereas H4K20me3 is a
hallmark of suppressed heterochromatic areas and is linked
to transcription repression and transposon activity (106).
SETD8 is the only methyltransferase known to catalyze
the monomethylation of H4K20, and can govern gene
transcription, maintain genomic integrity and regulate cell-
cycle progression by monomethylating H4K20. The vast
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majority of di- and tri-methylation modications are mediated
by the SUV4-20H1 and SUV4-20H2 enzymes (107). Besides
acting on lysine, SET8 also can methylate non-histone proteins
such as TWIST and p53 (105). On the one hand, SET8 binds
directly to and inactivates the target gene by monomethylating
H4K20, resulting in the inhibition of its downstream pathways in
the pathogenesis of some diseases (108); on the other hand,
SET8/H4K20me1 is enriched in the promoter and coding regions
of transcriptionally active genes, for example, mediating the
transcriptional activation of Wnt target gene (109), which can
regulate the expression of the target protein RUNX2 and, in turn,
may regulate the phenotypic transformation of VSMCs (110).
Furthermore, downregulation of SET8-mediated H4K20me1 is
involved in the increasing modulation of PTEN expression,
which mediates endothelial inammation to generate VC
(111). Yang et al. discovered that SET8 also acts as a protective
epigenetic modier on the TWIST promoters via its H4K20
monomethylation activity. When factors that contribute to the
inhibition of SET8 expression, such as high phosphorus, TWIST
target genes can be monomethylated to inhibit AKT expression
by negatively regulating their transcription, and then Caspase-3
expression can be promoted, which, in turn, promotes apoptosis
and increases the development of calcication in VSMCs
(112,113).
Although SET8 has a complex mechanism of action in H4K20
and non-histone catalysis, in terms of overall effect SET8 is
signicantly downregulated in the calcication model (114). The
methylation modication of H4K20 is highly complex due to the
different effects at different levels of methylation; therefore,
researchers may focus on the specic role of SET8 in different
pathways and the effects of other H4K20 methyltransferases
on VC.
5 HKMTS SUBSTRATES LYSINE FROM
NON-HISTONE TO CONTROL VC
According to current research, HKMTs have a broad function in
identifying methylated lysines on non-histone proteins. The area
of non-histone methylation is still in its early stages, and the
majority of applications identied thus far are p53-related.
Furthermore, HKMTs catalyze a variety of non-histone
proteins involved in the VC pathological process.
5.1 HKMTs Methylate p53 Lysine and
Participate in VC
The p53 oncogene, in addition to being one of the most
important tumour suppressors in cells, has recently been
discovered to play a vital role in VC (115,116). The HKMTs
SET9, SMYD2, G9a and SET8 can methylate four of the six lysine
sites at the C-terminus of the p53 protein to modulate its
function (117). Consequently, p53 activity can be enhanced or
lowered after methylation modication, and the response of p53-
mediated transcription activation suppression depends on target
genes. SET9 mono- and dimethylates p53K372 to regulate the
expression of p53 target genes, and positively affects p53 stability
(118,119). SMYD2 was thought to be a transcription coactivator
as it can deposit methyl groups on histones H3K4 and H3K36,
both of which are epigenetic signatures of active transcription
(120). However, unlike its action on histones, SMYD2 generally
performs an inhibitory role in regulating non-histone proteins.
For example, SMYD2 directly monomethylates p53 at K370 to
inhibit its transactivation (121). In addition, SMYD2 was
reported to act as an endogenous antagonist of p53-dependent
cardiomyocyte apoptosis (122), which may have a connection to
VSMCs. G9a dimethylates p53 at lysine 373 to inhabit p53
activity (123), and G9a inhibitors that restore p53 activity may
act as therapeutic agents for treating specic diseases (124). SET8
inhibits apoptosis and cell cycle arrest, by monomethylating the
lysine 382 site of p53 to p53K382me1 and decreasing p53
transcription (125). By regulating the p53/Bcl-2/caspase
signalling pathway, SET8 can downregulate the expression of
anti-apoptotic protein Bcl-2 and upregulate the expression of
pro-apoptotic proteins Bax and Caspase3, thus participating in
the regulation of calcication and apoptosis in VSMCs when its
expression is reduced by various factors (126). Meanwhile, lysine
methylation impairs the function of the Numb phosphotyrosine-
binding (PTB) domain, detaches Numb from p53, and prevents
it from performing its pro-apoptotic role (127). The mTOR
pathway may affect VSMC senescence through upregulation of
p53/p21/p16 (128). Upregulation of p53/p21/p16 by the mTOR
pathway impacts VSMC senescence (52), and downregulation of
p53 expression by activation of the ROS/p53/p21 pathway has
also been discovered to slow down the process of vascular aging
(129). Using p53 knockout or p21 knockout mice, however, it
was discovered that the atherosclerotic lesion developed faster
than the wild type, even though DNA damage and VSMC death
were reduced compared to the control. This could be due to the
multiple functions of the p53 and p21 genes, implying that there
may be another unknown mechanism in the p53-associated VC.
Researchers have identied HKMTs as p53-modifying enzymes
and have suggested analyzing how methylation may help
maintain normal physiological function to regulate different
p53 functions, in search of a dynamic equilibrium that can
both inhibit apoptotic pathways and reduce VC. Further, the
inuence of p53 is likely an important area of future research, as
their methylation state could affect different substrates to
modulate the dysregulation of multiple pathological states and
restore them to a relatively normal state.
5.2 Heat Shock Proteins Are Associated
With VC and Can Be Methylated by HKMTs
Several post-translational modications are also present in HSPs,
including methylation modications. The current research found
that the dimethylation of HSP70 lysine at position 561 was
catalyzed by SETD1A (112), while HSP90AB1 lysine at
position 531 and lysine at position 574 were dimethylated by
SMYD2 (130). Similarly, SMYD2 methylates Hsp90 in muscle to
maintain titin stability and muscular function (131). Yao et al.
illustrated that HSP70 mediated the procalcic effect on
calcifying vascular cells by binding to MGP and enhancing
BMP activity, showing a potential connection between cellular
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stress, inammation, and BMP signalling (132). Together, these
studies demonstrated that HKMTs can methylate HSPs and
HSPs serve a role in the VC progress-related pathways, so
what requires further conrmation is the specic mechanism
of HSPs in VC and whether HKMTs play an HSP-associated role
in VC.
5.3 p65 Is Involved in VC and Plays a Dual
Role via Different HKMTs
P65 is one of the most important components of the
transcription factor nuclear factor-kB (NF-kB), which regulates
the expression of a wide variety of genes (133). NF-kB -p65
activated by phosphorylation, in response to various factors,
promotes transcription of target genes (134). NSD1 was
discovered to catalyze the methylation of p65 K218/K221me,
enhancing the transcriptional activity of the NF-kB pathway
(135). Increased circulating levels of other inammatory factors,
such as TNF, IL-6 and NF-kB, can promote calcication in
VSMCs (136), and interleukin 1b(IL-1b) induces osteogenic
transformation of VSMCs through the activation of the NF-kB/
p53/p21 pathway, ultimately leading to VC (137). Six methylated
K sites, K37, 218, 221, 310, 314, and 315, have been identied on
the p65 subunit of NF-kB(138). Yang and colleagues reported
that p65 is monomethylated by SET9 on K314 and 315, resulting
in inhibition of NF-kB action by inducing the proteasome-
mediated degradation of the p65 promoter (139). However,
methylation of SET9 at the p65K37 site exhibited the opposite
effect, and could activate the NF-kB pathway (140). SETD6
monomethylates p65 on K310, leading to the induction of a
repressed state of NF-kB target genes through the binding of
G9a-like protein (141). Taken together, the NF-kB pathway is
critical in VC and in the development of many diseases. Various
HKMTs act on p65 in this pathway to inhibit or promote
pathogenesis, and it is worthwhile to investigate how to reduce
p65-related methylation activation, and, thus, control the NF-kB
pathway to reduce the occurrence of VC.
5.4 HKMTs Catalyze ERaLysine and
Control Its Downstream Function
Studies have shown that different HKMTs operate at different
locations on the oestrogen receptor alpha (ERa) and thus show
different effects in physiopathological processes. SETD7 catalyzes
the monomethylation of ERalysine position 302
(ERaK302me1) to stabilize the ERaprotein, which is
necessary for the efcient recruitment of ER to its target genes
and the activation of an oestrogen-driven transcriptional
response (142). SMYD2 catalyzes ERK266me1 and prevents
ER binding to chromatin, inhibiting ER target gene activation
(143). G9a methylates ERaat K235, attracting the PHF20/MOF
complex to deposit histone acetylation and boosting gene
activation (144). Oestrogen inhibits VC by modulating the
receptor activator of nuclear factor-kappa B (RANK) and
RANKL signalling pathways (145). Runx2, a major osteogenic
transcription factor expressed in calcied atherosclerotic
plaques, can be inhibited by estradiol in osteoblasts (132).
Meanwhile, McRobb et al. illustrated an opposite effect, that
oestrogen can promote calcication in advanced atherosclerotic
lesions by promoting the differentiation of VSMCs to osteoblast-
like cells, and this process could be augmented by inhibition of
ERaor ERbactivity (146). These ndings provide some
directions for the identication of novel ERamethylation
targets associated with VC in the later stage, and for the
development of novel therapies. Researchers may further
investigate how ER methylation can play a role in reducing
VC, based on numerous studies that have demonstrated the
preventive effects of oestrogen in cardiovascular disease.
5.5 Methylated MAPK Participates in
Various Diseases
The mitogen-activated protein kinase (MAPK) route, the P13K
system, and the cyclic adenosine phosphate (CAMP) pathway
are all implicated in controlling the phenotypic transition of
VSMCs. RAS/RAF/MEK/ERK1/2 is a typical MAPK signal
transduction pathway (147) and MAPK/ERK has a veried
relationship with vascular dysfunction (148). SMYD3
methylates MAP3K2 at lysine 260, increasing MAPK signalling
(149), and SMYD3 overexpression is associated with poor
prognosis in a variety of diseases (150). Overall, we believe that
theimpactofMAPKlysinemethylationshouldnotbe
overlooked in the VC research. Exploration of MAPK
methylation modications could explain the related pathway in
VC and become a new target with which to overcome VC in
the future.
6 HKMTS CATALYZE LYSINE
SUBSTRATES TO PARTICIPATE IN THE
MECHANISM OF VASCULAR
CALCIFICATION
As a classic saying goes, all roads lead to Rome. During
pathologic processes, many signal pathways work
independently to achieve the same goal. HKMTs have been
demonstrated to play an important role in each of these
pathways, either by inhibiting or boosting gene expression, or
by targeting critical components of a signalling system
implicated in physiopathological activity. The majority of
current research regarding the role of HKMTs in pathway
signallingmediated disease development is concentrated on
tumours, and evidence has shown that HKMTs and
pathological pathways associated with VC have sophisticated
cross-talk. HKMTs are involved in various pathological
alterations such as vascular inammation, atherosclerosis and
VC, and play seemingly minor epigenetic modifying roles
throughout the pathway. Because HKMTs are post-
translational modifying enzymes, they can affect gene
expression at almost every segment of the pathway. When all
pathways leading to VC are linked together, each location of the
pathway may behave as a possible target for HKMTs to act, either
activating or inhibiting the VC process. At the macroscopic level,
independent and distinct HKMTs may burst into a mighty ame
from little sparks (Figure 2).
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6.1 Wnt/b-Catenin Pathway
The Wnt/b-catenin signalling pathway is a cell/receptor context
dependent route to activate the nuclear functions of b-catenin
and can activate the expression of target genes, and this pathway
is involved in virtually all physiological or pathological
mechanisms in a variety of organisms. In the classical Wnt
signalling pathway, when the Wnt ligand binds to the FZD-
LRP5-LRP6 co-receptor, it promotes the phosphorylation of
glycogen synthase kinase 3b(GSK3b), thereby b-catenin can
be prevented from being degraded. In addition, b-catenin
accumulates stably in the cytoplasm before it enters the
nucleus to bind to T-cell factor/Lymphoid enhancer-binding
factor (Tcf/Lef), triggering target gene transcription (151).
Multiple studies have suggested that the Wnt signalling
pathway is involved in VSMC calcication (152,153), and Hao
et al. identied elevated expressions of b-catenin and Wnt-5a in
VC (154). Meanwhile, abnormalities in Wnt signalling are
associated with aberrant epigenetic modication mechanisms
(155). The histone H3K27 methyltransferase EZH2 is abundant
in Wnt promoters, according to genome-wide proling studies
(156). H3K27me3 is an important modication involved in Wnt/
b-catenin pathways, acting as a marker of gene repression (157).
EZH2-regulated H3K27me3 plays a negative role on the b-
catenin promoter during the odontogenic differentiation of
hDPCs (158), and Lu et al. indicated that activation of EZH2
can inhibit the expression of Wnt and BMP targets and that
PRC2 dysfunction can elevate Wnt signalling, shown by genomic
occupancy and transcriptomic analyses. Together, reducing
EZH2 activity and H3K27me3 levels may induce
demyelinating diseases (159). Researchers have recently begun
to investigate the existence and signicance of histone lysine
methylation modications in the Wnt/bcatenin pathway in
investigations into the mechanisms of VC. Advanced glycation
end products (AGEs) can activate the Wnt/bcatenin signalling
pathway by binding to the receptor for advanced glycation end
products (RAGE) on the cell membrane (160), and it has been
shown that AGEs signicantly stimulate the expression of
osteopontin (OPN), osteocalcin (OC) and Runx2 mRNA in rat
aortic smooth muscle cells (161), during which b-catenin and
OPG gene expressions are upregulated, leading to the
differentiation of VSMCs into osteoblasts and ultimately to the
development of VC (162). RAGE induces the conversion of
VSMCs to osteoblasts through activation of signalling pathways
such as ERK (163), NF-kB(164)andWnt(160); thus,
participating in VC. AGEs decrease EZH2 expression in
podocytes and, consequently, reduces H3K27me3, causing an
upregulated expression of pathological factors and contributing
to podocyte injury in diabetic kidney disease (165). EZH2 is
required in Wilmstumour1(WT1)-mediatedb-catenin
inactivation via repression of secreted frizzled-related protein 1
(SFRP-1), which is a Wnt antagonist, and EZH2-mediated
silencing of SFRP-1 is due to increased H3K27me3 at its
promoter area(s) (166). H3K27 methyltransferase EZH2
represses Wnt genes directly to facilitate adipogenesis, and
deletion of EZH2 eliminates H3K27me3 on WNT promoters
and de-represses Wnt expression, leading to activation of Wnt/
beta-catenin signalling (167). The mechanism of SET8 activation
of the Wnt signalling pathway is yet to be revealed, despite
numerous studies (104). However, after activation of the Wnt
signalling pathway, SET8 has been found to act as a
transcriptional activation cofactor for H4K20me1 modication
of histones, regulating chromosomal conformation and thus
recruiting more transcription factors to accumulate and initiate
downstream gene transcription (105). Through these ndings, it
is evident that the Wnt/b-catenin pathway plays an essential role
in vascular calcication, as well as that HKMTs regulate VC
FIGURE 2 | Complex network of relevant pathways involving mutual interactions in vascular calcication via HKMTs. The entire process of vascular calcication is
the consequence of a complex integrated effect which is determined by multiple pathways. HKMTs, as a post-translational modifying enzyme that can act on both
histone lysine and catalyze lysine from non-histone, have been shown to perform a sophisticated function in inhibiting or promoting multiple pathways of VC
progression. This gure summarizes the pathways constituted by the mechanisms involved in vascular calcication by HKMTs and their role in the process of
vascular calcication. Created with BioRender.com.
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progression by methylating critical factors in the pathway.
Considering that HKMTs have a bidirectional effect on the
regulation of the pathway, we couldnt help wondering which
modality of regulation is more benecial in reducing the
occurrence of vascular calcication?
6.2 NF-kB Pathway
In normally unstimulated conditions, nuclear factor kappa B
(NF-kB) in the cytoplasm is inactivated and binds to inhibitor of
kappa B proteins (IkBs), forming a trimeric complex. In the
presence of external stimuli, TNF receptors on the cell
membrane surface bind cytokines and multimerize, and then
interact with TRADD molecules in the cytoplasm. IkB then
dissociates from the p50/p65/IkB heterotrimer and is degraded;
thus, NF-kB is released from repression and enters the nucleus,
where it binds to specic sequences on intranuclear DNA to
initiate or enhance the transcription of related genes (168). NF-
kB signalling has been implicated in osteogenic differentiation of
VSMCs in response to diverse stimuli such as high glucose (169),
high phosphate (9,170) and oxidative stress (171), as well as pro-
inammatory cytokines. TNFNF-kB signalling can signicantly
increase ALP activity and TNF-activated NF-kBpromotes
inammation-accelerated VC (172). In addition to enhancing
ALP activity, NF-kB activation also upregulates BMP-2 and
Runx2 expression, thereby interfering with the anti-
calcication pathway in VSMCs (172). Barroso et al. revealed
that EZH2 suppression promoted the expression of
inammatory cytokines by the reduction of H3K27me3 in
promoters of related genes, and activated the NF-kB pathway
in the vasculature (173). For example, the decrease of H3K27me3
at the IL-1bpromoter can increase IL-1bexpression, which acts
on IL-1bR to activate the NF-kB pathway (174). EZH2 deciency
enhances tumour necrosis factor receptor-associated factor 2
(TRAF2) expression, thereby enhancing TNF-a-induced NF-kB
signalling (175). SMYD2-mediated TRAF2 methylation
continuously activates the NF-kB signalling axis by sustaining
its own stability (176). In addition to the amplied inammatory
program caused by inhibition of EZH2, inhibition of G9a
expression can also enhance the NF-kB pathway by reducing
H3K9me2 expression, inducing an inammatory response in
VSMCs (177). Therefore, increasing H3K9me2 or H3K27me3
levels of NF-kB pathwayassociated sites, by regulating HKMTs
activity or inhibiting relative demethylases, may provide a novel
target strategy for VC.
6.3 BMP Pathway
BMP signalling exists mainly in the form of specic binding of
ligands to serine/threonine kinase receptors on the cell
membrane, forming a ligand-receptor binary complex. The
type I receptors phosphorylate Smad proteins (Smad1, Smad5,
and Smad8), prompting Smad molecules to detach from the cell
membrane and enter the nucleus after binding Smad4 molecules
(common-Smad, Co-Smad) in the cytoplasm. In the nucleus,
the Smad multiplex acts on specic target genes with the
participation of other DNA-binding proteins, regulating the
transcription of the target genes (178). Researchers have
conrmed since decades ago that BMP signalling was involved
in VC (179) and that the BMP signalling pathway crosstalks
with the Wnt signalling pathway (180). SMYD2 was shown to
have a strong association with the BMP pathway by methylating
BMPR2, which, in turn, facilitates Smad1/5 phosphorylation,
nuclear entry, and interaction with Smad4 and, consequently,
BMP target gene expression (181). EZH2 deletion increases the
BMP-dependent Smad1/5 phosphorylation by decreasing
H3K27me3 near transcriptional start sites (182). Suv39h2
interacts with Smad5, and can silence the myogenic promoters
by methylation of histone H3K9 which induces the expression of
osteoblast-specic genes (183). Wang et al. described the reduced
level of H3K9me3 and H3K27me3 and their occupancy at
promoters of Bmp2 and Bmp4 without affecting the expression
of HKMTs, implying that histone demethylases may be
responsible for the reduction in methylation (184). In
summary, according to the most recent ndings, HKMTs act
at several levels of the BMP signalling pathway, and BMP is
regarded as a major contributor in VC promotion. Researchers
should investigate other undiscovered mechanisms of the BMP
pathway in VC advancement, as well as ways to control VC
progression by controlling HKMTsactivation or inhabitation.
6.4 PI3K/AKT Pathway
PI3K/AKT signalling plays a critical role in cellular physiology
(185) and it is conrmed that calcication of VSMCs could be
signicantly reduced by applying LY294002, a specic inhibitor
of the PI3K/AKT pathway, indicating that activation of the PI3K/
AKT pathway could promote VC (186). One of the pathways of
AGEs that lead to VC includes activation of the PI3K/AKT
signalling pathway (187). Researchers have also identied that
AKT can increase the stability and transcriptional activity of
Runx2 protein to regulate osteoblast differentiation (188). In
addition, PI3K/AKT and ERK signalling pathways can elevate
BMP-4 and ALP expression through activation of RANKL, and
this process can be reversed after pretreatment with LY294002
(42). The mechanism of interaction between the PI3K/AKT
pathway and histone lysine methylation has also been widely
studied. EZH2 can act as a substrate for AKT, and the activation
of AKT signalling pathway phosphorylates EZH2, which
decreases the afnity between EZH2 and histone, leading to
the loss of EZH2 methylation histone function and the decrease
of H3K27me3 level, promoting the development of disease (189).
These discoveries demonstrate that the interaction of the PI3K/
AKT pathway with altered methylation catalyzed by HKMTs has
critical properties for VC progression. In conclusion, enhanced
understanding of the role of HKMTs in the PI3K/AKT pathway
affecting VC helps to enhance the physiological and
pathological interpretation.
7 HKMTS REGULATOR AND THE CLINICAL
APPLICATION PROSPECTS IN VC
Given that HKMTs-mediated histone or non-histone lysine
methylation plays an important role in various pathways of VC
development, we can investigate how targeting HKMTs or
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demethylases through small molecules can affect enzyme
function, which may be an efcient therapy for VC. Since the
discovery of histone lysine specic demethylase 1 (LSD1) (190),
the thought that histone methylation is an irreversible process
has been overturned, and researchers have begun to recognize
that the histone methylation process is dynamically active, so
how to use this dynamism to regulate disease onset and
progression deserves the attention of researchers. Based on
the previous studies, we expect mis-regulated genes can be re-
expressed after treatment with methyltransferase inhibitors or
activators in vascular calcication. A variety of researches have
shownthatinhibitorsofHKMTscanbeusedincancer
treatment, for example, Tazemetostat, an EHZ2 inhibitor, for
which researchers have started clinical trials to prove its efcacy
in tumors such as lymphoma (191). However, few studies have
investigated the treatment of VC by targeting methylated lysine
associated with HKMTs, and the epigenetic regulatory
medicines that researchers have identied that may be
applied to control VC include inhibitors of histone
deacetylase and histone acetyltransferases (192,193). To date,
these epigenetic mechanism-related small molecule inhibitors
or activators have not been applied to clinical trials for the
treatment of VC and related cardiovascular diseases. Therefore,
researchers can focus on molecules which can regulate
HKMTsanddevelopnewepi-drugstargetingHKMTsto
maintain the physiological homeostasis of the organism. It is
expected to nd an effective way to target VC through histone
methylation modications.
In addition, another application of epigenetic modications
in VC can be the determination of disease progression and
prognosis by specic biomarkers. The current research
indicates that methylated lysine sites such as H3K4me3 can be
identied as epigenetic marks associated with Myh7 gene
expression (194). And EZH2 has been proven to be a
promising therapeutic and prognostic biomarker for tumors
(195). In summary, investigators have conrmed in studies on
other diseases that HKMTs and methylated substrates can be
used as biomarkers for diagnosis and prognosis of diseases.
Although there are no research results so far to suggest that
HKMTs can be used as biomarkers for VC, it also gives
researchers ideas to identify new markers that can contribute
to the diagnosis and prognosis of VC.
8 CONCLUSION
In summary, histone lysine methylation modication is an
important component of epigenetics, and their abnormal
expression and function are receiving increasing attention with
regard to the pathogenesis of VC. The study of histone lysine
methylation in relation to VC has also made initial progress,
showing that histone lysine methylation is associated with
transcriptional activation or repression in different conditions
in VC, and inhibiting or activating the expression of HKMTs can
affect the progression. However, the exact mechanism of histone
methylation modication is not well understood to date.
Therefore, although abnormal histone lysine methylation has
been veried to be associated with VC, further research is needed
to elucidate the relationship between the two phenomena at the
molecular level. An in-depth study of the pathogenesis of VC in
combination with the characteristics of HKMTs will help to gain
a deeper understanding of the bridgebetween histone lysine
methylation modication and VC. The development of effective
prevention and treatment tools based on this mechanism will be
of great signicance in controlling the development of VC and
reducing mortality in the elderly, especially in patients with
concomitant cardiovascular disease.
AUTHOR CONTRIBUTIONS
L-QY wrote the manuscript and approved the nal version of the
manuscript. Y-CC contributed to study conduct, data analysis,
and manuscript writing. S-KS, BG, C-CL, F-X-ZL, M-HZ, Q-SX,
YW, L-ML, K-XT, W-LO-Y, J-YD, Y-YW, MU, Z-AZ, FX, X-BL,
FW and XL contributed to data analysis. All authors reviewed the
manuscript. All authors contributed to the article and approved
the submitted version.
FUNDING
This work was supported by funding from the National Natural
Science Foundation of China (Nos. 81770881 and 82070910).
Key R & D plan of Hunan Province (2020SK2078). Natural
Science Foundation of Hunan Province (2021JJ30036).
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Cao et al. Histone Lysine Methylation Modication
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Copyright © 2022 Cao, Shan, Guo, Li, Li, Zheng, Xu, Wang, Lei, Tang,
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Cao et al. Histone Lysine Methylation Modication
Frontiers in Endocrinology | www.frontiersin.org June 2022 | Volume 13 | Article 86370817
... Methylation of H3K4, H3K26, H3K36, H3K79, and H4K12 is mainly involved in gene activation, while methylation of H3K9, H3K27, H3K56, H4K5, and H4K20 is related to gene silencing. 157 Highly expressed in tumors, SUV39H1, SETDB2 and G9a mainly target H3K9 for methylation, and H3K4 is the methylated target of KMT2A-E and KMT7. KMT3A-G can methylate H3K36 and is overexpressed in multiple cancers. ...
... Notably, much attention has been paid to the fact that EZH2 is mainly involved in tumorigenesis by regulating histone H3 lysine 27 (H3K27) methylation, whose overexpression is associated with poor prognosis. [157][158][159][160] Histone methyltransferases are closely related to drug resistance ( Fig. 3). High expression of EZH2 can activate cell survival pathways to promote ovarian cancer resistance to cisplatin. ...
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Drug resistance is mainly responsible for cancer recurrence and poor prognosis. Epigenetic regulation is a heritable change in gene expressions independent of nucleotide sequence changes. As the common epigenetic regulation mechanisms, DNA methylation, histone modification, and non-coding RNA regulation have been well studied. Increasing evidence has shown that aberrant epigenetic regulations contribute to tumor resistance. Therefore, targeting epigenetic regulators represents an effective strategy to reverse drug resistance. In this review, we mainly summarize the roles of epigenetic regulation in tumor resistance. In addition, as the essential factors for epigenetic modifications, histone demethylases mediate the histone or genomic DNA modifications. Herein, we comprehensively describe the functions of the histone demethylase family including the lysine-specific demethylase family, the Jumonji C-domain-containing demethylase family, and the histone arginine demethylase family, and fully discuss their regulatory mechanisms related to cancer drug resistance. In addition, therapeutic strategies, including small-molecule inhibitors and small interfering RNA targeting histone demethylases to overcome drug resistance, are also described.
... In addition, phosphorus and calcium can individually or jointly promote the dysfunction and calcification of VSMCs [20]. High concentration of phosphorus can not only directly promote the phenotypic transformation of VSMCs into osteoblast-like cells, reduce the expression of smooth muscle cell markers and enhance the expression of osteochondrogenic genes [21], but also cause the calcification of VSMCs by increasing the apoptosis and mitochondrial oxidative stress of VSMCs, as well as the release of calcifying matrix vesicles [9,22,23]. Thi Nguyen et al. found that phosphate carrier (PiC) is important for mitochondrial phosphorus uptake and mediates superoxide production and calcification in VSMCs induced by high phosphorus [9]. Our recent study demonstrated that exosomes (Exos) secreted from ECs induced by high phosphate could significantly promote VSMCs calcification by enriching miR-670-3p in ECs-derived exosomes [24]. ...
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Vascular calcification often occurs in patients with chronic renal failure (CRF), which significantly increases the incidence of cardiovascular events in CRF patients. Our previous studies identified the crosstalk between the endothelial cells (ECs) and vascular smooth muscle cells (VSMCs), and the paracrine effect of VSMCs, which regulate the calcification of VSMCs. Herein, we aim to investigate the effects of exosomes secreted by high phosphorus (HPi) -induced adventitial fibroblasts (AFs) on the calcification of VSMCs and the underlying mechanism, which will further elucidate the important role of AFs in high phosphorus vascular wall microenvironment. The conditioned medium of HPi-induced AFs promotes the calcification of VSMCs, which is partially abrogated by GW4869, a blocker of exosomes biogenesis or release. Exosomes secreted by high phosphorus-induced AFs (AFsHPi-Exos) show similar effects on VSMCs. miR-21-5p is enriched in AFsHPi-Exos, and miR-21-5p enhances osteoblast-like differentiation of VSMCs by downregulating cysteine-rich motor neuron 1 (Crim1) expression. AFsHPi-Exos and exosomes secreted by AFs with overexpression of miR-21-5p (AFsmiR21M-Exos) significantly accelerate vascular calcification in CRF mice. In general, AFsHPi-Exos promote the calcification of VSMCs and vascular calcification by delivering miR-21-5p to VSMCs and subsequently inhibiting the expression of Crim1. Combined with our previous studies, the present experiment supports the theory of vascular wall microenvironment. Graphical Abstract
... MAC is an important part of vascular ageing. It is a systemic vascular disease that is distinct from atherosclerosis and is commonly seen in diabetes, end stage renal disease and ageing, resulting in increased vascular stiffness [10,11], diastolic heart failure [12], impaired coronary perfusion [13] and chronic limb ischaemia [14]. MAC was previously thought to be a simple passive deposition of calcium and phosphorus. ...
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Medial arterial calcification (MAC), a systemic vascular disease different from atherosclerosis, is associated with an increased incidence of cardiovascular events. Several studies have demonstrated that ambient temperature is one of the most important factors affecting cardiovascular events. However, there has been limited research on the effect of different ambient temperatures on MAC. In the present study, we showed that cold temperature exposure (CT) in mice slowed down the formation of vitamin D (VD)-induced vascular calcification compared with room temperature exposure (RT). To investigate the mechanism involved, we isolated plasma-derived exosomes from mice subjected to CT or RT for 30 days (CT-Exo or RT-Exo, respectively). Compared with RT-Exo, CT-Exo remarkably alleviated the calcification/senescence formation of vascular smooth muscle cells (VSMCs) and promoted autophagy by activating the phosphorylation of AMP-activated protein kinase (p-AMPK) and inhibiting phosphorylation of mammalian target of rapamycin (p-mTOR). At the same time, CT-Exo promoted autophagy in β-glycerophosphate (β-GP)-induced VSMCs. The number of autophagosomes and the expression of autophagy-related proteins ATG5 and LC3B increased, while the expression of p62 decreased. Based on a microRNA chip microarray assay and real-time polymerase chain reaction, miR-320a-3p was highly enriched in CT-Exo as well as thoracic aortic vessels in CT mice. miR-320a-3p downregulation in CT-Exo using AntagomiR-320a-3p inhibited autophagy and blunted its anti-calcification protective effect on VSMCs. Moreover, we identified that programmed cell death 4 (PDCD4) is a target of miR-320a-3p, and silencing PDCD4 increased autophagy and decreased calcification in VSMCs. Treatment with CT-Exo alleviated the formation of MAC in VD-treated mice, while these effects were partially reversed by GW4869. Furthermore, the anti-arterial calcification protective effects of CT-Exo were largely abolished by AntagomiR-320a-3p in VD-induced mice. In summary, we have highlighted that prolonged cold may be a good way to reduce the incidence of MAC. Specifically, miR-320a-3p from CT-Exo could protect against the initiation and progression of MAC via the AMPK/mTOR autophagy pathway. Graphic Abstract
... Recently, SMYD2 and SMYD3, together with other SET proteins, have been shown to function in the development of vascular disease. The methylation of H3K4 and H3K36 was dependent on SET and associated with vascular calcification [104,105]. To evaluate the pathophysiology of vascular calcification, the development of pharmacologic agents that target and reverse the methylation of lysine groups on histones to restore homeostasis has been proposed. ...
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A comprehensive understanding of the mechanisms involved in epigenetic changes in gene expression is essential to the clinical management of diseases linked to the SMYD family of lysine methyltransferases. The five known SMYD enzymes catalyze the transfer of donor methyl groups from S-adenosylmethionine (SAM) to specific lysines on histones and non-histone substrates. SMYDs family members have distinct tissue distributions and tissue-specific functions, including regulation of development, cell differentiation, and embryogenesis. Diseases associated with SMYDs include the repressed transcription of SMYD1 genes needed for the formation of ion channels in the heart leading to heart failure, SMYD2 overexpression in esophageal squamous cell carcinoma (ESCC) or p53-related cancers, and poor prognosis associated with SMYD3 overexpression in more than 14 types of cancer including breast cancer, colon cancer, prostate cancer, lung cancer, and pancreatic cancer. Given the importance of epigenetics in various pathologies, the development of epigenetic inhibitors has attracted considerable attention from the pharmaceutical industry. The pharmacologic development of the inhibitors involves the identification of molecules regulating both functional SMYD SET (Suppressor of variegation, Enhancer of Zeste, Trithorax) and MYND (Myeloid-Nervy-DEAF1) domains, a process facilitated by available X-ray structures for SMYD1, SMYD2, and SMYD3. Important leads for potential pharmaceutical agents have been reported for SMYD2 and SMYD3 enzymes, and six epigenetic inhibitors have been developed for drugs used to treat myelodysplastic syndrome (Vidaza, Dacogen), cutaneous T-cell lymphoma (Zoinza, Isrodax), and peripheral T-cell lymphoma (Beleodag, Epidaza). The recently demonstrated reversal of SMYD histone methylation suggests that reversing the epigenetic effects of SMYDs in cancerous tissues may be a desirable target for pharmacological development.
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Non-alcoholic fatty liver disease (NAFLD) poses a significant health challenge in modern societies due to shifts in lifestyle and dietary habits. Its complexity stems from genetic predisposition, environmental influences, and metabolic factors. Epigenetic processes govern various cellular functions such as transcription, chromatin structure, and cell division. In NAFLD, these epigenetic tendencies, especially the process of histone methylation, are intricately intertwined with fat accumulation in the liver. Histone methylation is regulated by different enzymes like methyltransferases and demethylases and influences the expression of genes related to adipogenesis. While early-stage NAFLD is reversible, its progression to severe stages becomes almost irreversible. Therefore, early detection and intervention in NAFLD are crucial, and understanding the precise role of histone methylation in the early stages of NAFLD could be vital in halting or potentially reversing the progression of this disease.
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Vascular calcification is a severe complication of cardiovascular diseases. Previous studies demonstrated that endothelial lineage cells transitioned into osteoblast-like cells and contributed to vascular calcification. Here, we found that inhibition of cyclin-dependent kinase (CDK) prevented endothelial lineage cells from transitioning to osteoblast-like cells and reduced vascular calcification. We identified a robust induction of CDK1 in endothelial cells (ECs) in calcified arteries and showed that EC-specific gene deletion of CDK1 decreased the calcification. We found that limiting CDK1 induced E-twenty-six specific sequence variant 2 (ETV2), which was responsible for blocking endothelial lineage cells from undergoing osteoblast differentiation. We also found that inhibition of CDK1 reduced vascular calcification in a diabetic mouse model. Together, the results highlight the importance of CDK1 suppression and suggest CDK1 inhibition as a potential option for treating vascular calcification.
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Purpose The purpose of this study was to investigate the antitumor effects of GSK-J4 on retinoblastoma, as well as its related biological functions and molecular mechanisms. Methods The antitumor effect of GSK-J4 on retinoblastoma was evaluated by in vitro and in vivo assays. CCK-8, EdU incorporation, and soft agar colony formation assays were performed to examine the effect of GSK-J4 on cell proliferation. Flow cytometry was used to evaluate the effect of GSK-J4 on the cell cycle and apoptosis. RNA-seq and Western blotting were conducted to explore the molecular mechanisms of GSK-J4. An orthotopic xenograft model was established to determine the effect of GSK-J4 on tumor growth. Results GSK-J4 significantly inhibited retinoblastoma cell proliferation both in vitro and in vivo, arrested the cell cycle at G2/M phase, and induced apoptosis. Mechanistically, GSK-J4 may suppress retinoblastoma cell growth by regulating the PI3K/AKT/NF-κB signaling pathway. Conclusions The antitumor effects of GSK-J4 were noticeable in retinoblastoma and were at least partially mediated by PI3K/AKT/NF-κB pathway suppression. Our study provides a novel strategy for the treatment of retinoblastoma.
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Vascular calcification (VC) is a common complication of chronic kidney disease (CKD) and contributes to an increased risk of cardiovascular morbidity and mortality. However, effective therapies are still unavailable at present. It has been well established that VC associated with CKD is not a passive process of calcium phosphate deposition, but an actively regulated and cell-mediated process that shares many similarities with bone formation. Additionally, numerous studies have suggested that CKD patients have specific risk factors and contributors to the development of VC, such as hyperphosphatemia, uremic toxins, oxidative stress and inflammation. Although research efforts in the past decade have greatly improved our knowledge of the multiple factors and mechanisms involved in CKD-related VC, many questions remain unanswered. Moreover, studies from the past decade have demonstrated that epigenetic modifications abnormalities, such as DNA methylation, histone modifications and noncoding RNAs, play an important role in the regulation of VC. This review seeks to provide an overview of the pathophysiological and molecular mechanisms of VC associated with CKD, mainly focusing on the involvement of epigenetic modifications in the initiation and progression of uremic VC, with the aim to develop promising therapies for CKD-related cardiovascular events in the future.
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Cervical cancer (CC) is an important public health problem for women, and perspectives and information regarding its prevention and treatment are quickly evolving. Human papilloma virus (HPV) has been recognized as a major contributor to CC development; however, HPV infection is not the only cause of CC. Epigenetics refers to changes in gene expression levels caused by non-gene sequence changes. Growing evidence suggests that the disruption of gene expression patterns which were governed by epigenetic modifications can result in cancer, autoimmune diseases, and various other maladies. This article mainly reviews the current research status of epigenetic modifications in CC based on four aspects, respectively DNA methylation, histone modification, noncoding RNA regulation and chromatin regulation, and we also discuss their functions and molecular mechanisms in the occurrence and progression of CC. This review provides new ideas for early screening, risk assessment, molecular targeted therapy and prognostic prediction of CC.
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New therapeutic approaches are needed for metastatic osteosarcoma (OS), as survival rates remain low despite surgery and chemotherapy. Epigenetic changes, such as histone H3 methylation, play key roles in many cancers including OS, although the underlying mechanisms are not clear. In this study, human OS tissue and OS cell lines displayed lower levels of histone H3 lysine trimethylation compared with normal bone tissue and osteoblast cells. Treating OS cells with the histone lysine demethylase inhibitor 5-carboxy-8-hydroxyquinoline (IOX-1) dose-dependently increased histone H3 methylation and inhibited cellular migratory and invasive capabilities, suppressed matrix metalloproteinase expression, reversed epithelial-to-mesenchymal transition by increasing levels of epithelial markers E-cadherin and ZO-1 and decreasing the expression of mesenchymal markers N-cadherin, vimentin, and TWIST, and also reduced stemness properties. An analysis of cultivated MG63 cisplatin-resistant (MG63-CR) cells revealed lower histone H3 lysine trimethylation levels compared with levels in MG63 cells. Exposing MG63-CR cells to IOX-1 increased histone H3 trimethylation and ATP-binding cassette transporter expression, potentially sensitizing MG63-CR cells to cisplatin. In conclusion, our study suggests that histone H3 lysine trimethylation is associated with metastatic OS and that IOX-1 or other epigenetic modulators present promising strategies to inhibit metastatic OS progression.
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Previous studies have shown that the apoptosis of vascular smooth muscle cells (VSMCs) underlies the mechanism of pathological calcification in patients with chronic kidney disease (CKD). SET domain-containing protein 8 (SET8) is an efficient protein that modulates apoptosis in hepatocellular carcinoma cells, esophageal squamous cells, and neuronal cells by regulating pathological processes, such as cell cycle progression and transcription regulation. However, whether SET8 is involved in high phosphorus-induced vascular calcification by mediating apoptosis remains unclear. Here, we report that SET8 is located both in the nucleus and cytoplasm and is significantly downregulated in calcification models. SET8 deficiency promoted apoptosis of VSMCs, as indicated by the increased Bax/Bcl-2 and cleaved caspase-3/total caspase-3 ratios. Mechanistically, the PI3K/Akt pathway was mediated by SET8, and inhibition of the PI3K/Akt signaling pathway by administering LY294002 or transfecting the Akt phosphorylation-inactivated mutation plasmid increased apoptosis and calcification. Akt phosphorylation constitutively activated mutations can reduce the apoptosis and calcification of VSMCs. Furthermore, exogenous overexpression of SET8 reversed the effect of PI3K/Akt inhibition on VSMC apoptosis and calcification. In summary, our research suggests that SET8 overexpression ameliorates high phosphorus-induced calcification of VSMCs by activating PI3K/Akt mediated anti-apoptotic effects.
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Background The methylation of lysine residues has been involved in the multiple biological and diseases processes. Recently, some particular non-histone proteins have been elucidated to be methylated by SMYD2, a SET and MYND domain protein with lysine methyltransferase activity. Methods SMYD2 was evaluated in synovial tissue and cells derived from rheumatoid arthritis patients. We confirmed TRAF2 could be methylated by SMYD2 using Mass spectrometry, pull-down, immunoprecipitation, methyltransferase assay, ubiquitination assay, luciferase reporter assays, and western blot analyses. Using loss- and gain-of function studies, we explored the biological functions of SMYD2 in vitro and in vivo. Using acute and chronic inflammation with different mice models to determine the impact of SMYD2. Results Here, we first time confirmed that the cytoplasmic protein TRAF2 as the kernel node for NF-κB signaling pathway could be methylated by SMYD2. SMYD2-mediated TRAF2 methylation contributed to the durative sensitization of NF-κB signaling transduction through restraining its own proteolysis and enhancing the activity. In addition, we found knocking down of SMYD2 has different degrees of mitigation in acute and chronic inflammation mice models. Furthermore, as the lysine-specific demethylase, LSD1 could resist methylation on TRAF2 induced by SMYD2. Conclusions Our data uncovered an unprecedented cytoplasmic protein network that employed methylation of TRAF2 for the maintenance of NF-κB activation during inflammatory diseases.
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Hydroxamate-based lysine deacetylase inhibitors (KDACis) are approved for clinical use against certain cancers. However, intrinsic and acquired resistance presents a major problem. Treatment of cells with hydroxamates such as trichostatin A (TSA) leads to rapid preferential acetylation of histone H3 already trimethylated on lysine 4 (H3K4me3), although the importance of this H3K4me3-directed acetylation in the biological consequences of KDACi treatment is not known. We address this utilizing Dictyostelium discoideum strains lacking H3K4me3 due to disruption of the gene encoding the Set1 methyltransferase or mutations in endogenous H3 genes. Loss of H3K4me3 confers resistance to TSA-induced developmental inhibition and delays accumulation of H3K9Ac and H3K14Ac. H3K4me3-directed H3Ac is mediated by Sgf29, a subunit of the SAGA acetyltransferase complex that interacts with H3K4me3 via a tandem tudor domain (TTD). We identify an Sgf29 orthologue in Dictyostelium with a TTD that specifically recognizes the H3K4me3 modification. Disruption of the gene encoding Sgf29 delays accumulation of H3K9Ac and abrogates H3K4me3-directed H3Ac. Either loss or overexpression of Sgf29 confers developmental resistance to TSA. Our results demonstrate that rapid acetylation of H3K4me3 histones regulates developmental sensitivity to TSA. Levels of H3K4me3 or Sgf29 will provide useful biomarkers for sensitivity to this class of chemotherapeutic drug.
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In the course of chronic kidney disease (CKD), alterations in the bone-vascular axis augment the risk of bone loss, fractures, vascular and soft tissue calcification, left ventricular hypertrophy, renal and myocardial fibrosis, which markedly increase morbidity and mortality rates. A major challenge to improve skeletal and cardiovascular outcomes in CKD patients requires a better understanding of the increasing complex interactions among the main modulators of the bone-vascular axis. Serum parathyroid hormone (PTH), phosphorus (P), calcium (Ca), fibroblast growth factor 23 (FGF23), calcidiol, calcitriol and Klotho are involved in this axis interact with RANK/RANKL/OPG system and the Wnt/β-catenin pathway. The RANK/RANKL/OPG system controls bone remodeling by inducing osteoblast synthesis of RANKL and downregulating OPG production and it is also implicated in vascular calcification. The complexity of this system has recently increased due the discovery of LGR4, a novel RANKL receptor involved in bone formation, but possibly also in vascular calcification. The Wnt/β-catenin pathway plays a key role in bone formation: when this pathway is activated, bone is formed, but when it is inhibited, bone formation is stopped. In the progression of CKD, a downregulation of the Wnt/β-catenin pathway has been described which occurs mainly through the not coincident elevations of sclerostin, Dickkopf1 (Dkk1) and the secreted Frizzled Related Proteins (sFRPs). This review analyzes the interactions of PTH, P, Ca, FGF23, calcidiol, calcitriol and Klotho with the RANKL/RANKL/OPG system and the Wnt/β-catenin, pathway and their implications in bone and cardiovascular disorders in CKD.
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Background Vascular calcification contributes to morbidity and mortality in patients with ESRD on maintenance hemodialysis. Aims To study the relationship between osteocalcin and vascular calcification. Methods 160 patients with ESRD on maintenance hemodialysis and 60 age-and sex-matched healthy controls were recruited. Serum vitamin K2 and osteocalcin both intact and undercarboxylated were measured. Transthoracic echocardiography was done for valvular calcification and thickening, and carotid duplex was done for carotid intimal medial calcification and thickening. Results Hemodialysis patients have higher median serum vitamin K2 (p < 0.001), higher undercarboxylated osteocalcin (p < 0.001). Only older age, duration of hypertension, and duration of established cardiovascular disease are associated with carotid media-intimal calcification. Old age is a strong predictor of carotid media intimal thickening. Female sex is associated with a valvular thickening. Conclusions Functional vitamin K deficiency is present in maintenance hemodialysis patients and serum osteocalcin is not associated with cardiovascular calcification.
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Histone methyltransferases of the nuclear receptor-binding SET domain protein (NSD) family, including NSD1, NSD2 and NSD3, have crucial roles in chromatin regulation and are implicated in oncogenesis1,2. NSD enzymes exhibit an autoinhibitory state that is relieved by binding to nucleosomes, enabling dimethylation of histone H3 at Lys36 (H3K36)3–7. However, the molecular basis that underlies this mechanism is largely unknown. Here we solve the cryo-electron microscopy structures of NSD2 and NSD3 bound to mononucleosomes. We find that binding of NSD2 and NSD3 to mononucleosomes causes DNA near the linker region to unwrap, which facilitates insertion of the catalytic core between the histone octamer and the unwrapped segment of DNA. A network of DNA- and histone-specific contacts between NSD2 or NSD3 and the nucleosome precisely defines the position of the enzyme on the nucleosome, explaining the specificity of methylation to H3K36. Intermolecular contacts between NSD proteins and nucleosomes are altered by several recurrent cancer-associated mutations in NSD2 and NSD3. NSDs that contain these mutations are catalytically hyperactive in vitro and in cells, and their ectopic expression promotes the proliferation of cancer cells and the growth of xenograft tumours. Together, our research provides molecular insights into the nucleosome-based recognition and histone-modification mechanisms of NSD2 and NSD3, which could lead to strategies for therapeutic targeting of proteins of the NSD family.
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In this study, we studied the effect and possible mechanism of TGF-β1 on vascular calcification. We found that the serum levels of TGF-β1 and cycloxygenase-2 (COX-2) were significantly increased in patients with chronic kidney disease. Phosphate up regulated TGF-β1 in vascular smooth muscle cells (VSMCs). TGF-β1 decreased the markers of VSMCs, but increased osteogenic markers and calcification in aortic segments. The phosphate-induced osteogenic markers were reduced by the TGFβR I inhibitor (LY364947), which also attenuated the potential of phosphate to reduce VSMC markers in VSMCs. Both phosphate and TGF-β1 increased the protein level of β-catenin, which was partially mitigated by LY364947. TGF-β1 decreased sclerostin, and exogenous sclerostin decreased the mineralization induced by TGF-β1. LY364947 reduced the phosphate and TGF-β1 induced COX-2. Meanwhile, the effects of TGF-β1 on osteogenic markers, β-catenin, and sclerostin, were partially reversed by the COX-2 inhibitor. Mechanistically, we found that p-Smad2/3 and p-CREB were both enriched at the promoter regions of sclerostin and β-catenin. TGF-β1 and COX-2 were significantly elevated in serum and aorta of rats undergoing renal failure. Therapeutic administration of meloxicam effectively ameliorated the renal lesion. Our results suggested that COX-2 may mediate the effect of TGF-β1 on vascular calcification through down-regulating sclerostin in VMSCs.
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SMYD3 (SET and MYND domain-containing protein 3) is a protein lysine methyltransferase that was initially described as an H3K4 methyltransferase involved in transcriptional regulation. SMYD3 has been reported to methylate and regulate several nonhistone proteins relevant to cancer, including mitogen-activated protein kinase kinase kinase 2 (MAP3K2), vascular endothelial growth factor receptor 1 (VEGFR1), and the human epidermal growth factor receptor 2 (HER2). In addition, overexpression of SMYD3 has been linked to poor prognosis in certain cancers, suggesting SMYD3 as a potential oncogene and attractive cancer drug target. Here we report the discovery of a novel SMYD3 inhibitor. We performed a thermal shift assay (TSA)-based high-throughput screening (HTS) with 410,000 compounds and identified a novel benzodiazepine-based SMYD3 inhibitor series. Crystal structures revealed that this series binds to the substrate binding site and occupies the hydrophobic lysine binding pocket via an unprecedented hydrogen bonding pattern. Biochemical assays showed substrate competitive behavior. Following optimization and extensive biophysical validation with surface plasmon resonance (SPR) analysis and isothermal titration calorimetry (ITC), we identified BAY-6035, which shows nanomolar potency and selectivity against kinases and other PKMTs. Furthermore, BAY-6035 specifically inhibits methylation of MAP3K2 by SMYD3 in a cellular mechanistic assay with an IC 50 <100 nM. Moreover, we describe a congeneric negative control to BAY-6035. In summary, BAY-6035 is a novel selective and potent SMYD3 inhibitor probe that will foster the exploration of the biological role of SMYD3 in diseased and nondiseased tissues.
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Cross-talk between histone modifications Histone modifications play pivotal roles within the intricate protein networks that underlie transcription and gene silencing in eukaryotic genomes. The enzymes that deposit them undergo spatiotemporal fine-tuning of their catalytic activity; one example is trans-histone cross-talk, in which one histone modification activates an enzyme responsible for another histone modification. Valencia-Sánchez et al. show that histone H4 lysine 16 acetylation (H4K16ac), a hallmark of decondensed, transcriptionally permissive chromatin, directly stimulates the Dot1 histone H3 lysine 79 methyltransferase. Structural, biochemical, and cellular data explain Dot1's regulation by H4K16ac and show how it coordinates with a second positive regulator of Dot1, histone H2B ubiquitination. Science , this issue p. eabc6663
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Vascular calcification (VC), the ectopic deposition of calcium phosphate crystals in the vessel wall, is one of the primary contributors to cardiovascular death. The pathology of VC is determined by vascular topography, pre-existing diseases, and our genetic heritage. VC evolves from inflammation, mediated by macrophages, and from the osteochondrogenic transition of vascular smooth muscle cells (VSMC) in the atherosclerotic plaque. This pathologic transition partly resembles endochondral ossification, involving the chronologically ordered activation of the β-catenin-independent and-dependent Wingless and Int-1 (WNT) pathways and the termination of peroxisome proliferator-activated receptor γ (PPARγ) signal transduction. Several atherosclerotic plaque studies confirmed the differential activity of PPARγ and the WNT signaling pathways in VC. Notably, the actively regulated β-catenin-dependent and-independent WNT signals increase the osteochondrogenic transformation of VSMC through the up-regulation of the osteochondrogenic transcription factors SRY-box transcription factor 9 (SOX9) and runt-related transcription factor 2 (RUNX2). In addition, we have reported studies showing that WNT signaling pathways may be antagonized by PPARγ activation via the expression of different families of WNT inhibitors and through its direct interaction with β-catenin. In this review, we summarize the existing knowledge on WNT and PPARγ signaling and their interplay during the osteochondrogenic differentiation of VSMC in VC. Finally, we discuss knowledge gaps on this interplay and its possible clinical impact.