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Urolithiasis (2020) 48:377–384
https://doi.org/10.1007/s00240-020-01202-w
INVITED REVIEW
Calcium oxalate crystal deposition inthekidney: identication, causes
andconsequences
R.Geraghty1· K.Wood2· J.A.Sayer1,3,4
Received: 23 June 2020 / Accepted: 17 July 2020 / Published online: 27 July 2020
© The Author(s) 2020
Abstract
Calcium oxalate (CaOx) crystal deposition within the tubules is often a perplexing finding on renal biopsy of both native and
transplanted kidneys. Understanding the underlying causes may help diagnosis and future management. The most frequent
cause of CaOx crystal deposition within the kidney is hyperoxaluria. When this is seen in native kidney biopsy, primary
hyperoxaluria must be considered and investigated further with biochemical and genetic tests. Secondary hyperoxaluria,
for example due to enteric hyperoxaluria following bariatric surgery, ingested ethylene glycol or vitamin C overdose may
also cause CaOx deposition in native kidneys. CaOx deposition is a frequent finding in renal transplant biopsy, often as a
consequence of acute tubular necrosis and is associated with poorer long-term graft outcomes. CaOx crystal deposition in
the renal transplant may also be secondary to any of the causes associated with this phenotype in the native kidney. The
pathophysiology underlying CaOx deposition is complex but this histological phenotype may indicate serious underlying
pathology and should always warrant further investigation.
Keywords Calcium oxalate· Oxalosis· Primary hyperoxaluria· Enteric hyperoxaluria
Introduction
Calcium oxalate (CaOx) crystal deposition within the
nephron [1–3], tubular cells [4] or interstitium [5] are
sometimes found by the histopathologist examining a renal
biopsy. CaOx, along with calcium phosphate (CaP) deposi-
tion may lead to nephrocalcinosis [6, 7], although in practice
CaOx crystal deposition is often referred to as renal oxalosis
or oxalate nephropathy. Bagnasco etal. examined biopsies
of both native and transplanted kidneys over the course of
6years [6]. Overall, 1% of native kidney biopsies and 4%
of transplanted kidney biopsies demonstrated CaOx crystal
deposition.
The presence of CaOx crystal deposition within a renal
biopsy may indicate serious underlying pathology and indi-
cate an underlying diagnosis that may not have previously
been considered [7, 8]. Of particular relevance are the pri-
mary hyperoxalurias (PH), which may cause end stage kid-
ney disease and may recur following kidney transplantation.
The diagnosis of PH has potentially life-changing effects
with a broad range of treatment options, up to and including
dual kidney and liver transplant [9, 10].
Crystalluria, although associated with hyperoxaluria [11],
is an uncommon finding [12–14]. There are no descriptions
of the association between CaOx crystalluria and renal oxa-
losis. Here we aim to explore the causes of CaOx crystal
deposition within a renal biopsy and therefore the implica-
tions and future management for the patient. We will review
the histological appearances, the substrates that are most
likely to cause CaOx crystal deposition and the pathophysi-
ology associated with CaOx crystal deposition.
* J. A. Sayer
John.sayer@newcastle.ac.uk
1 Renal Services, The Newcastle Hospitals NHS Foundation
Trust, NewcastleuponTyneNE77DN, UK
2 Histopathology Department, The Newcastle Hospitals NHS
Foundation Trust, NewcastleuponTyneNE14LP, UK
3 Translational andClinical Research Institute, Faculty
ofMedical Sciences, International Centre forLife, Newcastle
University, Central Parkway, NewcastleuponTyneNE13BZ,
UK
4 NIHR Newcastle Biomedical Research Centre,
NewcastleuponTyne, UK
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378 Urolithiasis (2020) 48:377–384
1 3
Histology ofcalcium oxalate deposition
Oxalate crystals precipitate in renal tubules causing tubular
injury and in the longer term, interstitial fibrosis and tubular
atrophy. They have a clear appearance on light microscopy
[15] (Fig.1a) but are much more easily seen when viewed
under polarised light where they show bright birefringence
(Fig.1b). Particularly abundant crystals are typically asso-
ciated with PH or ethylene glycol ingestion. Lesser degrees
of deposition can be seen in a wide variety of conditions,
which are discussed below. The main pathological differen-
tial diagnosis is 2,8 dihydroxyadenine crystalline nephropa-
thy other cause of polarisable crystals seen in the kidney by
the histopathologist. These patients, with biallelic mutations
in APRT, have adenine phosphoribosyltransferase deficiency
and often develop recurrent nephrolithiasis. Diagnosis can
be challenging but the crystals can be distinguished from
calcium oxalate crystals by their brown colour on haema-
toxylin and eosin staining [16].
Calcium andoxalate: atale oftwo substrates
Hypercalciuria and hyperoxaluria are both known to cause
crystal deposition within the kidney [17]. In patients with
hypercalciuria, the primary crystal deposited is CaP [2],
this nidus may form the focus of aggregation for either CaP
or CaOx [18] This variable aggregation has been demon-
strated invitro [19], in rat models [17, 20], and observed
in humans [2]. However, in patients with hyperoxaluria the
predominant crystal type is CaOx [21]; this has again been
demonstrated in a rat model [17], invitro [4, 5, 22] and in
humans [2].
Crystal type and the components of subsequent aggrega-
tion are dependent upon specific locations along the nephron
and degrees of supersaturation. In the urinary space, it seems
that a CaP nidus initiates subsequent CaOx aggregation in
the invitro model [19], as in nephrolithiasis.
In the kidney, the type of crystal deposition appears to be
different dependent on the location along the nephron. CaP
crystals have been observed in the interstitium surrounding
the ascending thin limb of the loop of Henle [2], in stone-
forming patients with hypercalciuria. CaOx crystal deposi-
tion is typically seen more distally, having been observed
within the collecting duct and the interstitium surrounding
it [1, 14].
The situation therefore appears that in hypercalciuria,
CaP crystals are deposited within and around the nephron,
especially near the loop of Henle. By contrast, in hyperox-
aluria, CaOx crystal deposition is found within collecting
duct nephron segments. To test this hypothesis, Khan and
Glenton examined hypercalciuric mice with increasing lev-
els of oxaluria [20]. They demonstrated that in the genetic
hypercalciuric stone-forming (GHS) rat model before die-
tary manipulation, only CaP crystals were formed. However,
as the oxalate precursor hydroxyproline was added to their
diet, CaOx crystals were observed. As hydroxyproline con-
centrations increased, inducing a hyperoxaluria, the crystal
type switched to become entirely CaOx. This suggests that
intrarenal CaOx crystal formation is dependent upon hyper-
oxaluria rather than hypercalciuria.
The mechanism of CaOx deposition within the kidney
is subject to several factors. These include supersatura-
tion and precipitation, crystal aggregation and deposition
within the tubule/epithelium/interstitium. Several studies
have demonstrated that hyperoxaluria induces intratubular
precipitation of CaOx crystals located in the collecting duct
[1, 23]. There are two potential mechanisms by which crys-
tal passage through the tubule is inhibited (crystal reten-
tion). They have either aggregated and become too large [24,
Fig. 1 a = Oxalate nephropathy. A transplant kidney biopsy show-
ing calcium oxalate crystals in dilated tubules. The crystals are clear
with a refractile quality on routine microscopy (haematoxylin and
eosin × 400). b = Oxalate nephropathy. The same calcium oxalate
crystals exhibit bright birefringence when viewed under polarised
light (polarised haematoxylin and eosin × 400)
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379Urolithiasis (2020) 48:377–384
1 3
25], or they have adhered to the epithelium [26]. Following
either of these mechanisms, CaOx crystals then migrate
into the epithelium [27] and interstitium [5]. The process
behind this migration is unclear. However, crystal contain-
ing macrophages have been observed in both animal [28,
29] and human [30] epithelium/interstitium. Therefore active
removal by macrophages is a possible mechanism for this
observation, although this has yet to be demonstrated.
Pathologies associated withcalcium oxalate crystal
deposition
CaOx crystal deposition may be noted in both native and
transplanted kidneys, as a consequence of hyperoxalu-
ria. Oxalate has both endogenous and exogenous sources
[31, 32] and both are equally able to induce hyperoxalu-
ria (defined as > 40–45mg per 24h or > 0.45–0.5 mmol
per 24h). Tubular CaOx deposition leading to acute or
chronic tubular injury, interstitial fibrosis and progressive
renal insufficiency is termed oxalate nephropathy or renal
oxalosis.
Both native and transplanted kidneys are susceptible
to hyperoxaluria and subsequent oxalate nephropathy and
the causes for hyperoxaluria and crystal deposition differ
(Table1).
On light microscopy 2,8-hydroxyadenine crystals may
mimic CaOx crystals under polarized light, because of
their high birefringence [15]. However, the finding of
2,8-hydroxyadenine crystals mimicking CaOx crystals can
lead to a rare, often missed and important genetic diagnosis
being made. Likewise, genuine CaOx deposition can lead
to other important diagnoses being made and should never
be ignored.
Diabetes mellitus is a common cause of nephropathy
and it is unclear whether it is associated with renal oxa-
losis. Diabetics have demonstrably higher urinary oxalate
concentrations than healthy patients [33]. They have also
been observed to develop oxalate nephropathy in several
case reports [34, 35]. However, in these case reports, the
patients had independent risk factors for renal oxalosis
including Roux-en-Y bypass and increased dietary oxalate.
Moreover, CaOx crystals are not among the number of his-
tological features of diabetic nephropathy [36, 37]. A large
study of cadaveric renal biopsies examined risk factors asso-
ciated with renal oxalosis [38] Diabetes mellitus was shown
not to be associated with renal oxalosis. Therefore, if CaOx
crystals are seen on renal biopsy of a patient with diabetes,
the likely driving factor is hyperoxaluria. The type and cause
of hyperoxaluria should therefore be investigated as this may
lead to important changes in patient management.
Primary hyperoxaluria
Primary hyperoxaluria is a rare autosomal recessive disorder
associated with renal CaOx crystal deposition. Oxalate is an
end metabolite for glyoxylate and the three types of primary
hyperoxalurias (PH1-3) affect enzymes of glyoxylate metab-
olism. The enzymes implicated are: alanine glyoxylate ami-
notransferase (PH1) [39], glycolate reductase/hydroxypyru-
vate reductase (PH2) [40] and 4-hydroxy-2-ketoglutarate
aldolase (PH3) [41, 42]. These disorders tend to present in
childhood to early adolescence with severe recurrent nephro-
lithiasis, although given some may be asymptomatic (espe-
cially PH3), they may not present until the development of
advanced renal failure. PH may also present in late adult life
with calcium oxalate stone formation or insidious chronic
kidney disease.
Table 1 Causes of Calcium Oxalate crystal deposition within the native and transplanted kidney
Calcium oxalate crystal deposition
Native kidney Transplanted kidney
Primary hyperoxaluria – types 1–3 Causes as per native kidney
Secondary hyperoxaluria: Transient hyperoxaluria due to sudden increase in GFR and
previous systemic oxalosis secondary to end stage kidney
disease
Enteric hyperoxaluria (fat malabsorption) Acute tubular necrosis
High oxalate diet Chronic allograft nephropathy
Ethylene glycol intoxication
Thiamine/Pyridoxine deficiency
Vitamin C overdose (precursor of oxalic acid)
Orlistat use
Alterations in intestinal flora
Genetic variations of oxalate transporters
Acute tubular necrosis
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380 Urolithiasis (2020) 48:377–384
1 3
The majority of cases are PH1, which have the most
severe disease phenotypes. PH1 and PH2 both cause pro-
gressive nephrocalcinosis, nephrolithiasis and renal dam-
age resulting in early end stage renal failure [13, 26–28].
With the progressive decline in renal function comes rising
plasma oxalate levels. At a glomerular filtration rate < 45ml/
min/1.73m2 plasma oxalate concentrations exceed the
supersaturation threshold leading to systemic deposition of
CaOx (systemic oxalosis) [43]. This leads to early death if
left untreated [44].
It is unclear if patients with PH3 have the same natu-
ral history as PH1/2 given its rarity and recent description.
Recent data has shown children with PH3 show a decline in
renal function [45]. However, there remains a lack of long-
term follow-up data to allow for an accurate description of
its clinical course. It is possible that all types of PH may
present with unexplained chronic kidney disease and CaOx
crystal deposition on renal biopsy.
Secondary hyperoxalurias
Secondary hyperoxaluria may be due to a number of differ-
ent causes. The passage of oxalate through the body helps
illustrate why differing mechanisms cause hyperoxaluria.
There is a large oxalate content in certain foods [46], which
is both metabolized by gut commensals (Oxalobacter formi-
genes) [47] and absorbed into the enterohepatic circulation
[48, 49]. Absorbed oxalate is then filtered and excreted in the
kidney [48, 49] along with oxalate produced as an end-point
of glyoxylate metabolism.
At each of these points, excess oxalate may occur. Case
reports describing high intakes of oxalate containing foods
[46] or vitamin C [50] (which is catabolized into oxalate) are
associated with hyperoxaluria. Deficiencies, dietary or oth-
erwise, in thiamine or pyridoxine [51–54], deliberate inges-
tion of orlistat [55] or ethylene glycol [56, 57] may also lead
to hyperoxaluria. High doses of vitamin C [50], some foods
[58–61], excessive dieting [62] and ethylene glycol [56] have
been demonstrated to induce acute oxalate nephropathy.
The gut commensal Oxalobacter formigenes, catabolizes
oxalate thus diminishing gut absorption [63, 64]. There has
been an attempt to exploit this phenomenon for PH, which
showed initial promise, but unfortunately failed in phase II/
III trials [65]. Although touted as a treatment, there have not
been further studies of its effectiveness to treat secondary
hyperoxaluria.
Several case reports have associated hyperoxaluria with
bariatric surgery [66, 67] as well as chronic pancreatitis
[68, 69], with both conditions associated with acute oxa-
late nephropathy [66, 68]. Increased oxalate absorption is a
function of fat malabsorption (enteric hyperoxaluria). In the
normal state, oxalate is bound to calcium within the gut. Fat
malabsorption leads to free fatty acids binding to calcium,
leaving the oxalate in its absorbable, ionised state [49].
Mice and humans with genetic variations of gut oxalate
transporters have also been demonstrated to have increased
urinary oxalate [70] Deletion of Slc26a6 in mice [71, 72]
along with variants V185M in the SLC26A6 transporter in
humans [73] have both been associated with hyperoxaluria.
None of these studies performed renal biopsies and therefore
further study is required to see if these are risk factors for
oxalate nephropathy and CaOx deposition.
Transplanted kidneys
Around 4% of transplanted kidneys will display CaOx crys-
tals on biopsy [6]. Crystals can be found early or late, dis-
tributed throughout the kidney or only in focal segments.
In the initial post-operative period it is thought that, due
to the poor renal function indicating the need for transplant,
there is systemic oxalosis. With the improvement in renal
function attained by transplantation there is rapid excretion
of the excess oxalate. This leads to a transient hyperoxaluria
with a small proportion developing subsequent renal precipi-
tation of CaOx [74]. There is debate as to whether or not this
initial transient hyperoxaluria is pathological, and long-term
outcomes of this have not been proven.
There is more evidence for the implications of CaOx crys-
tals on renal biopsy, albeit conflicting. In the short term, the
presence of CaOx crystals on graft biopsy up to 3months
after transplantation seems to be associated with poorer
longer term graft survival [75]. Although a later study dem-
onstrated that, although graft function at 1year was signifi-
cantly poorer in those with CaOx deposition, there was no
statistically significant difference in renal function at 2years
[6]. In this second study however, there was an overall drop
in both control and crystal graft function in the second year
compared to the first. It is likely that CaOx crystals are a
negative prognostic indicator for long-term graft survival in
the initial period following transplantation. These patients
should be followed-up closely.
Delayed graft function and acute tubular necrosis (ATN)
or acute cell‐mediated rejection is associated with focal
CaOx deposition [76, 77]. The long-term impact of these
acute events is unclear. The majority of transplanted kidneys
demonstrated normal function at follow-up [76]. However,
these observations were underpowered, lacked follow-up
biopsies, and biochemical data for clinical correlation. The
authors postulated this observation was due to high oxalate
excretion using the mechanism previously described. How-
ever, inferring this mechanism from the data is difficult due
to the lack of clinical context and small numbers of patients.
In the longer term, CaOx crystals are seen on biopsy of
those with chronic allograft nephropathy [76]. In the two
patients studied, CaOx crystal deposition was widespread
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381Urolithiasis (2020) 48:377–384
1 3
in keeping with chronic renal failure (mechanism discussed
below). An earlier study by Memeo etal. of forty allograft
nephrectomies showed 87% had widespread CaOx crystals
[78]. Again, given the low numbers it is difficult to draw con-
clusions from these case reports, but they suggest CaOx crys-
tals, identified at any point in time from biopsy, are associated
with long-term graft failure.
Transplanted kidneys can also be affected by any of the
primary or secondary hyperoxalurias. Failure to diagnose PH
prior to transplantation may result in early graft failure [79,
80]. Likewise for secondary hyperoxalurias, failure to recog-
nise may lead to acute kidney injury [81] or even graft failure.
There have been graft failure case reports for enteric hyperox-
aluria [82, 83] and excessive vitamin C intake [84].
Pathophysiology ofrenal damage associated
withcrystal deposition
Severe hyperoxaluria has been demonstrated to be clinically
associated with acute or chronic renal failure, although it
is unclear which is causative of the other. It is also unclear
whether mild to moderate hyperoxaluria, such as that seen
in PH3, is associated with renal damage, despite evidence of
CaOx crystal deposition in both conditions.
There is a large body of evidence from rat and invitro mod-
els, and human observation that CaOx crystal deposition is
associated with renal epithelial damage [4, 5, 85–89]. Differ-
ing structures of CaOx crystals can damage renal epithelial
cells inducing apoptosis [22]. This body of evidence suggests
that epithelial injury and progressive inflammation is caused
by CaOx crystals, rather than CaOx crystals forming second-
ary to renal damage. This explains the findings in PH and
severe secondary hyperoxaluria.
The observation that CaOx crystals are only found in focal
segments of acute tubular necrosis in transplanted kidneys
[76, 77] however, does not fit with the widespread renal dam-
age and CaOx crystals of hyperoxaluria. It implies that CaOx
crystal deposition seen in this situation is secondary to focal
epithelial damage [4], rather than crystal precipitation and sub-
sequent epithelial damage.
The pathophysiology of renal oxalosis secondary to severe
hyperoxaluria has been described. However, the mechanism
of focal CaOx crystal deposition in acute tubular necrosis
remains unclear. CaOx crystals on renal biopsy should always
prompt investigation for serious underlying conditions in both
the native and transplanted kidney (Table1), that could lead to
progressive renal failure.
Conclusion
CaOx crystals identified histologically on renal biopsy are
indicative of a potential underlying pathology. This finding
warrants further investigation to determine the cause, the
most serious of which is PH. Much of the clinical litera-
ture describing conditions associated with CaOx crystal
deposition are case reports. In the long-term there appears
to be a potential association between CaOx deposition and
increased risk of chronic kidney disease. Larger studies are
needed to examine this association in more depth.
Acknowledgements RG is supported by the National Institute for
Health Research. JAS is supported by the Northern Counties Kidney
Research Fund and Kidney Research UK.
Compliance with Ethical Standards
Conflicts of interest The authors have no conflicts of interest to de-
clare.
Statement of human and animal rights All procedures performed in
studies involving human participants were in accordance with the ethi-
cal standards of the institutional research committee and with the 1964
Helsinki declaration and its later amendments or comparable ethical
standards.
Informed consent Informed written consent was obtained for use of
patient biopsy images in this article.
Open Access This article is licensed under a Creative Commons Attri-
bution 4.0 International License, which permits use, sharing, adapta-
tion, distribution and reproduction in any medium or format, as long
as you give appropriate credit to the original author(s) and the source,
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