This paper discusses the concept of vulnerable marine ecosystems (VME) developed by Food and Agriculture Organization of United Nations (FAO), in particular for protection of marine environment and resources in the areas beyond national jurisdictions. VME is a regulatory notion. From the ecological standpoint, it includes in most cases only part of integral marine ecosystem, i.e. bottom biotopes and communities forming by habitat-making organisms (aedificators), such as deep-water corals, sponges, mollusks and some other taxa building biogenic structures. Usage of the term VME and other notions, similar in meaning but not completely overlapping (such as Ecologically and Biologically Significant Areas, Vulnerable Habitats or Biotopes, Essential Fish Habitats, Habitat Areas of Particular Concern) are determined by traditions and task of the international and national institutions that have introduced them. The term VME is recommended to use generally with regards to meeting the FAO criteria. For marine biotopes and communities with significant contribution of biogenic structures, meeting at least some of five FAO criteria and regardless of jurisdiction, the term Vulnerable Biotopes is recommended. The approaches to identification of VME and vulnerable biotopes in the international fisheries areas, and in the EEZs of Norway and USA (Bering Sea) are reviewed. Using the VME concept in the Marine Stewardship Council (MSC) Standard for sustainable fisheries is discussed. Vulnerable bottom biotopes are considered in the context of the assessment of the fisheries impact in the Barents and other Russian seas. There is a need of gradual introduction of the concept of vulnerable benthic biotopes into Russian fisheries and marine management on the basis of development of integrated management plans for marine areas.