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Parakarstenia phyllostachydis, a new genus and species of non-lichenized Odontotremataceae (Ostropales, Ascomycota)

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Abstract

The new species Parakarstenia phyllostachydis was discovered on stems of Phyllostachys heteroclada in Sichuan Province of China and is placed in a new genus within Odontotremataceae in this paper. A multigene analysis of a combined nuclear ITS and LSU rDNA and mtSSU sequence dataset and comparable morphologies suggests the taxonomic affinity of the new taxon in this family. Maximum likelihood and Bayesian inference phylogenetic analyses provide evidence that the fungus is best placed in a distinct genus within this family. The new genus is compared with similar genera of Ostropales and a comprehensive description and illustration are offered. Parakarstenia is characterized by its distinct suite of features, such as initially immersed, intracortical, later erumpent and seemingly superficial, sessile and usually gregarious apothecia with a flat to slightly convex, greyish white or pale brown disc; a hairless, buff to yellow receptacle; a non-protruding margin, absent periphysoids and crystals, cylindrical to clavate asci with conical apex and a hemiamyloid (type RR) outer wall; and narrowly cylindrical-clavate to fusoid, vermiform, straight to medium curved, initially non-septate, at maturity transversely multiseptate ascospores. An updated phylogram for Ostropales with selected, predominantly non-lichenized members based on multigene analysis is provided.
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Mycological Progress
ISSN 1617-416X
Volume 18
Number 6
Mycol Progress (2019) 18:833-845
DOI 10.1007/s11557-019-01492-4
Parakarstenia phyllostachydis, a new
genus and species of non-lichenized
Odontotremataceae (Ostropales,
Ascomycota)
Chunlin Yang, Hans-Otto Baral, Xiulan
Xu & Yinggao Liu
1 23
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ORIGINAL ARTICLE
Parakarstenia phyllostachydis, a new genus and species
of non-lichenized Odontotremataceae (Ostropales, Ascomycota)
Chunlin Yang
1
&Hans-Otto Baral
2
&Xiulan Xu
1,3
&Yinggao Liu
1
Received: 19 December 2018 / Revised: 31 March 2019 / Accepted: 4 April 2019
#German Mycological Society and Springer-Verlag GmbH Germany, part of Springer Nature 2019
Abstract
The new species Parakarstenia phyllostachydis was discovered on stems of Phyllostachys heteroclada in Sichuan Province of
China and is placed in a new genus within Odontotremataceae in this paper. A multigene analysis of a combined nuclear ITS and
LSU rDNA and mtSSU sequence dataset and comparable morphologies suggests the taxonomic affinity of the new taxon in this
family. Maximum likelihood and Bayesian inference phylogenetic analyses provide evidence that the fungus is best placed in a
distinct genus within this family. The new genus is compared with similar genera of Ostropales and a comprehensive description
and illustration are offered. Parakarstenia is characterized by its distinct suite of features, such as initially immersed, intracortical,
later erumpent and seemingly superficial, sessile and usually gregarious apothecia with a flat to slightly convex, greyish white or
pale brown disc; a hairless, buff to yellow receptacle; a non-protruding margin, absent periphysoids and crystals, cylindrical to
clavate asci with conical apex and a hemiamyloid (type RR) outer wall; and narrowly cylindrical-clavate to fusoid, vermiform,
straight to medium curved, initially non-septate, at maturity transversely multiseptate ascospores. An updated phylogram for
Ostropales with selected, predominantly non-lichenized members based on multigene analysis is provided.
Keywords New genus and species .Bambusicolous fungi .Karstenia .Phylogeny .Taxo nomy
Introduction
The class Lecanoromycetes O.E. Erikss. & Winka, formally
erectedbyErikssonandWinka(1997), constitutes one of the
largest classes of Ascomycota with more than 14,200 species
(Wedin et al. 2005a; Miadlikowska et al. 2014; Gueidan et al.
2015; Lücking et al. 2017;Kraichaketal.2018) and currently
includes four subclasses, namely Acarosporomycetidae,
Lecanoromycetidae, Ostropomycetidae and
Umbilicariomycetidae (Voglmayr et al. 2019). This class com-
prises the largest number of lichen-forming ascomycetes, of
which the majority (over 95%) are lichenized species
(Eriksson et al. 2004; Lumbsch and Huhndorf 2007,2010;
Kirk et al. 2008; Miadlikowska et al. 2014; Gueidan et al.
2015;Kraichaketal.2018; Wijayawardene et al. 2018).
However, several genera comprising non-lichenized species
are incorporated within this lineage (Sherwood 1977;
Mayrhofer and Poelt 1985; Sherwood-Pike 1987; Holm and
Holm 1993; Kohlmeyer and Volkmann-Kohlmeyer 1996;
Döbbeler 2003,2006; Wedin et al. 2005b; Evans et al. 2010;
Barreto et al. 2012; Flakus and Kukwa 2012;Balochetal.
2013; Miadlikowska et al. 2014; Gueidan et al. 2015; van
Nieuwenhuijzen et al. 2016; Ohmura and Mayrhofer 2016;
Koukol et al. 2017;Jahnetal.2017; Fernández-Brime et al.
2017), namely Deltopyxis,Malvinia and Spirographa (incertae
sedis); Claviradulomyces,Coccomycetella,Odontotrema,
Odontura,Potriphila,Rogellia and Stromatothecia
(Odontotremataceae); Mycowinteria and Protothelenella
(Protothelenellaceae); and Acarosporina,Cryptodiscus,
Cyanodermella,Dendroseptoria,Karstenia,Lillicoa,Ostropa,
Propoliopsis,Robergea,Schizoxylon,Sphaeropezia,Stictis,
Stictophacidium,Thelopsis and Glomerobolus (Stictidaceae).
Most non-lichenized genera with more than 130 species are
nested within the order Ostropales of the Ostropomycetidae
(Lumbsch et al. 2007;Balochetal.2010; Gueidan et al.
2015; Diederich et al. 2018). They grow as saprophytes or
Section Editor: Gerhard Rambold
*Yinggao Liu
lyg927@263.net
1
College of Forestry, Sichuan Agricultural University, Huiming Road
211, Wenjiang, Chengdu 611130, China
2
Blaihofstraße 42, D-72074, Tübingen, Germany
3
Forestry Research Institute, Chengdu Academy of Agricultural and
Forestry Sciences, Nongke Road 200, Chengdu 611130, China
Mycological Progress (2019) 18:833845
https://doi.org/10.1007/s11557-019-01492-4
Author's personal copy
sometimes parasites on leaves, herbaceous stems, bark and
wood of branches and trunks, mosses and ferns and lichens.
Sometimes species include several life strategies (lichenized
and saprotrophic) (Wedin et al. 2004,2006). Most species occur
on plants, but no bamboos are recorded in the known literature
(Sherwood 1977; Eriksson 1981; Sherwood-Pike 1987;
Wilberforce 1999; Döbbeler 2003,2006;Balochetal.2010,
2013; Miadlikowska et al. 2014; Gueidan et al. 2015;Liand
Hou 2016; Koukol et al. 2017; Fernández-Brime et al. 2017).
The order Ostropales was established by Nannfeldt (1932)
and was for a long time the largest order in Ostropomycetidae
(Baloch et al. 2010;Miadlikowskaetal.2014; Gueidan et al.
2015). Now only two families are recognized with over 180
species (Kraichak et al. 2018; Index Fungorum 2019), viz.
Odontotremataceae and Stictidaceae, while other families
were transferred to Baeomycetales, Graphidales and
Gyalectales. In the new circumscription, a majority of mem-
bers of Ostropales are characterized by a special type of
hemiangiocarpous ascoma ontogeny and the hymenia and asci
being hemiamyloid, i.e. the entire ascus wall reacts red in
Lugols solution (IKI), while no reaction is obtained in
Melzers reagent (MLZ) and a blue reaction in either reagent
when KOH-pretreated (Baral 2009; Lumbsch et al. 2007;
Baloch et al. 2010; Gueidan et al. 2015). Due to the huge
diversity in phenotypic characters and large-scale phylogeny,
the circumscription of Ostropales has frequently changed over
time (Table 1). It is worth mentioning that Kraichak et al.
(2018) recently addressed the circumscription of families
and orders within Ostropomycetidae using the temporal
banding approach, which is an effective method to appraise
the phylogenetic placement of taxa above familial level, and
accepted eight orders and 32 families in Ostropomycetidae. In
this study, this delimitation is followed.
The family Odontotremataceae was introduced by
Hawksworth and Sherwood (1982) who initially accepted
eight genera, with Odontotrema as the type genus.
Sherwood-Pike (1987) subsequently presented a monograph
of Odontotremataceae and reappraised the circumscription in
which Spilomela was excluded and two genera
(Coccomycetella and Pleospilis)were included. Since that
time, five genera were introduced to the family (Döbbeler
1996,1999;Magnes1997; Calatayud et al. 2001;Lumbsch
and Huhndorf 2007; Evans et al. 2010) and nine transitional
genera were transferred to other groups or determined as syn-
onymous (Holien and Triebel 1996; Diederich et al. 2002,
2018;Balochetal.2009,2013; Zhurbenko and
Yakovchenko 2014; Suija et al. 2015; Wijayawardene et al.
2018), namely Bryodiscus (a synonym of Sphaeropezia in
Table 1 The circumscription of the order Ostropales as it changed during the past decade
Lumbsch and
Huhndorf (2007)
Lumbsch and
Huhndorf (2010)
Miadlikowska et al. (2014);
Gueidan et al. (2015)
Lücking et al.
(2017)
Wijayawardene
et al. (2018)
Zhurbenko and Etayo (2013);
Diederich (2014,2018);
Kraichak et al. (2018); This study
Families
Coenogoniaceae Coenogoniaceae Coenogoniaceae Coenogoniaceae Coenogoniaceae Odontotremataceae
Gomphillaceae Gomphillaceae Graphidaceae Gomphillaceae Gomphillaceae Stictidaceae
Graphidaceae Graphidaceae Gyalectaceae Graphidaceae Graphidaceae
Gyalectaceae Gyalectaceae Myeloconidaceae Gyalectaceae Gyalectaceae
Myeloconidaceae Myeloconidaceae Odontotremataceae Phlyctidaceae Odontotremataceae
Odontotremataceae Odontotremataceae Phaneromycetaceae Porinaceae Phaneromycetaceae
Phaneromycetaceae Phaneromycetaceae Phlyctidaceae Protothelenellaceae Phlyctidaceae
Phlyctidaceae Phlyctidaceae Porinaceae Sagiolechiaceae Porinaceae
Porinaceae Porinaceae Sagiolechiaceae Stictidaceae Protothelenellaceae
Stictidaceae Stictidaceae Stictidaceae Thelenellaceae Sagiolechiaceae
Thelotremataceae Thrombiaceae Stictidaceae
Thelenellaceae
Thrombiaceae
Genera incertae sedis
Amphorothecium Amphorothecium Amphorothecium Amphorothecium Aabaarnia
?Leucogymnospora ?Leucogymnospora Anzina Anzina Amphorothecium
Malvinia Malvinia Corticifraga Biazrovia
?Phaeographopsis ?Phaeographopsis Malvinia Malvinia
Platygramme Platygraphopsis Normanogalla
Platygraphopsis ?Xyloschistes Paralethariicola
?Xyloschistes
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Stictidaceae), Geltingia (a genus of Helicogoniaceae in
Phacidiales), Lethariicola (a synonym of Sphaeropezia in
Stictidaceae), Paschelkiella (a synonym of Cryptodiscus in
Stictidaceae), Pleospilis (a synonym of Spirographa in
Ostropomycetidae), Rhymbocarpus and Skyttea (two genera
of Cordieritidaceae in Helotiales) and Sphaeropezia (a genus
of Stictidaceae). Spirographa is a pendulous genus which was
transferred to Ostropomycetidae or Ostropales incertae sedis
(Diederich et al. 2018; Wijayawardene et al. 2018). Currently,
nine genera are recognized in Odontotremataceae (Diederich
et al. 2018; Wijayawardene et al. 2018; This study), i.e.
Claviradulomyces,Coccomycetella,Odontotrema,
Table 2 Molecular data used in this study and GenBank accession numbers. The newly generated sequences are highlighted in bold and red
Species Specimen voucher Family Order LSU mtSSU ITS
Absconditella sphagnorum 17 Feb 02 Palice (HB Palice) Stictidaceae Ostropales AY300824 AY300872
Absconditella sphagnorum M24 Stictidaceae Ostropales EU940095 EU940247 EU940172
Acarosporina microspora CBS 338.39 Stictidaceae Ostropales AY584643 AY584612 DQ782834
Carestiella socia GG2437a Stictidaceae Ostropales AY661682 AY661678 AY661682
Carestiella socia GG2410 Stictidaceae Ostropales AY661687 AY661677 AY661687
Claviradulomyces dabeicola IMI 393994 Odontotremataceae Ostropales GQ337897 GQ337898 GQ337899
Claviradulomyces xylopiae CBS 133260 Odontotremataceae Ostropales JX843525 JX843524
Coccomycetella richardsonii EB74 Odontotremataceae Ostropales HM244761 HM244737
Cryptodiscus muriformis UPS F-647154 Stictidaceae Ostropales MG281962 MG281972 MG281962
Cryptodiscus muriformis H.B. 6773 Stictidaceae Ostropales MG281963 MG281973 MG281963
Cryptodiscus pallidus EB152 Stictidaceae Ostropales FJ904679 FJ904701 FJ904679
Cryptodiscus pallidus EB173 Stictidaceae Ostropales FJ904680 FJ904702 FJ904680
Cryptodiscus tabularum EB169 Stictidaceae Ostropales FJ904689 FJ904711 FJ904689
Cryptodiscus tabularum CO205 Stictidaceae Ostropales FJ904690 FJ904712 FJ904690
Cyanodermella asteris 03HOR06-2-4 Stictidaceae Ostropales KT758843 KT758843
Cyanodermella banksiae CPC 32105 Stictidaceae Ostropales MH327850 MH327814
Dendroseptoria mucilaginosa PRC3990 Stictidaceae Ostropales LT934543 LT934540
Geisleria sychnogonoides Caceres & Aptroot 13560 (ABL) Stictidaceae Ostropales KC689752 KC689751
Geisleria sychnogonoides GESY7510 Stictidaceae Ostropales KF220304 KF220306
Glomerobolus gelineus OSC 100192 Stictidaceae Ostropales DQ247803 DQ247783 DQ247782
Ingvariella bispora BCNLich 17183 Stictidaceae Ostropales HQ659185 HQ659174
Ingvariella bispora MALich 15288 Stictidaceae Ostropales HQ659184 HQ659173
Karstenia macer H.B. 10084a Odontotremataceae Ostropales ––UDB035013
Karstenia macer H.B. 9770 Odontotremataceae Ostropales ––UDB034357
Karstenia rhopaloides EB100 Odontotremataceae Ostropales FJ904685 FJ904707 FJ904685
Odontotrema phacidiellum EB54 Odontotremataceae Ostropales HM244769 HM244748
Odontotrema phacidioides EB168 Odontotremataceae Ostropales HM244770 HM244749
Ostropa barbara EB85 Stictidaceae Ostropales HM244773 HM244752 HM244773
Ostropa barbara S F302817 Stictidaceae Ostropales MG281965 MG281965
Parakarstenia phyllostachydis SICAU 16-0002 Odontotremataceae Ostropales MK296470 MK305901
Placopsis cribellans KS167 Trapeliaceae Baeomycetales KU844626 KU844570 KU844762
Placopsis perrugosa KS168 Trapeliaceae Baeomycetales KU844627 KU844571 KU844763
Robergea cubicularis G.M. 2013-05-09.1 Stictidaceae Ostropales KY611899 KY611899
Schizoxylon albescens GG2443a Stictidaceae Ostropales AY661690 AY661681 AY661690
Schizoxylon albescens GG2365 Stictidaceae Ostropales AY661689 AY661680 AY661689
Sphaeropezia capreae GG2560 Stictidaceae Ostropales AY661684 AY661674
Sphaeropezia lyckselensis EB 2012a Stictidaceae Ostropales JX266158 JX266156
Stictis radiata MW6493 Stictidaceae Ostropales AY527309 AY527338 AY527309
Stictis radiata GG2449a Stictidaceae Ostropales AY527308 AY340532 AY527308
Trapelia coarctata KS46 Trapeliaceae Baeomycetales KR017170 KR017353 KR017072
Xyloschistes platytropa H:Bjork 05-242 Stictidaceae Ostropales KJ766680 KJ766517
The newly generated sequences are highlighted in bold
Mycol Progress (2019) 18:833845 835
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Fig. 1 Phylogram generated from maximum likelihood analysis (RAxML)
based on a combined LSU, mtSSU and ITS sequenced data of taxa from the
order Ostropales. The tree is rooted to Placopsis cribellans (KS167),
P. perrugosa (KS168) and Trapelia coarctata (KS46). Bootstrap support
values (left) and Bayesian posterior probabilities (right) are given at the nodes.
The newly introduced taxon is highlighted in bold and red
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Odontura,Potriphila,Rogellia,Stromatothecia,Tryb lis and
Xerotrema. The family is morphologically close to
Stictidaceae, and its delimitation could be based on the ab-
sence of both a crystalline ascoma margin and filiform asco-
spores (Sherwood 1977,1981; Sherwood-Pike 1987).
However, these morphological characters do not have high
phylogenetic significance to permit differentiation and the ne-
cessity of using multigene sequence data to separate them
needs to be emphasized.
The present study is part of our work on fungi associated
with bamboo in Sichuan Province of China, which is the
hometown of the giant panda which eats bamboo species
(Wang et al. 2010,2017). This study resulted in the introduc-
tion of a new genus and species in Odontotremataceae which
was discovered on stems of Phyllostachys heteroclada Oliv. in
Yaan City of Sichuan Province. Combined three gene (ITS,
LSU, mtSSU) analyses were performed to confirm its taxo-
nomic placement in Ostropales. Detailed description and illus-
tration are provided and a comparison with similar genera is
carried out.
Materials and methods
Morphological studies
The holotype was collected in Sichuan Province, China and
deposited in the Herbarium of Sichuan Agricultural
University (SICAU). External shape, size and colour of
apothecia were observed and photographed in fresh state
using a dissecting microscope (Shanghai Advanced
Photoelectric Technology Co., Ltd., NVT-GG, China). The
material was dried and 2 weeks later rehydrated for micro-
scopic examination. Mature apothecia were selected for mor-
phological observation. Their anatomical details were obtain-
ed using a Nikon ECLIPSE Nicompound microscope fitted to
a Canon 600D digital camera or an OPTEC BK-DM320 mi-
croscope matched to a VS-800C microdigital camera
(Shenzhen Weishen Times Technology Co., Ltd., China).
Median sections were performed freehand with a razor blade.
Mounting media were sterilized water and different lethal me-
dia. Symbols were used for the living (*) and dead state ()of
the observed cells according to Baral (1992). Iodine reactions
of the ascus wall were tested in Lugols solution (IKI, ca. 1%
I
2
concentration) and Melzers reagent (MLZ) without or with
3% potassium hydroxide (KOH) pretreatment. The type RR
means a red reaction at both low and high iodine concentration
(without KOH pretreatment), while type RB means a blue
reaction at low concentration and dirty red at high concentra-
tion (Baral 2009). Measurements were taken from median
sections and from squash mounts in lactophenol cotton blue
or Congo red solution. The gelatinous sheath was observed in
Black Indian ink. The minimum and maximum measurements
of ascospores and other anatomical features were based on the
examination of 2030 different apothecia.
DNA extraction, PCR and sequencing
Genomic DNA was extracted directly from apothecial tissue,
following the protocol of Zheng and Zhuang (2013). LR0R
Table 3 Morphological comparison of Parakarstenia and similar genera
Genera Apothecia Periphysoids Asci Ascospores References
Coccomycetella Broadly immersed in
substrate. Margin dark,
protruding, ± dentate
Present, reaching down
to hymenial base
48-spored,
hemiamylo-
id
Narrowly cylindrical,
helicoid, transversely
13-septate
von Höhnel (1917),
Sherwood-Pike (1987),
Holien and Diederich
(2012), Personal obs.
Cryptodiscus Broadly immersed in
substrate. Margin pale,
protruding, ± even
Present but only above
hymenium
8-spored,
hemiamylo-
id (type
RB/RR)
Narrowly
cylindric-ellipsoid to
ellipsoid or
ellipsoid-fusoid,
transversely 17-septate
Sherwood (1977),
Fernández-Brime et al.
(2018); Personal obs.
Karstenia Broadly immersed in
substrate. Marginal pale to
dark, protruding, ± dentate
Present, reaching down
to hymenial base
8-spored,
hemiamylo-
id (type RB,
rarely RR)
Cylindrical to clavate,
transversely
315-septate
Sherwood (1977),
Wilberforce (1999);
Personal obs.
Odontotrema Broadly immersed in
substrate. Margin dark,
protruding, ± dentate
Present, reaching down
to hymenial base, in
a few species
indistinct
8-spored,
hemiamylo-
id (type
RB/RR)
Ellipsoid or cylindrical
suballantoid,
transversely 17-septate,
rarely submuriform
Sherwood-Pike (1987),
Diederich et al. (2002),
Baloch et al. (2013);
Personal obs.
Parakarstenia Only narrow stipe-like base
immersed in substrate.
Margin pale, not
protruding, ± even
Absent 8-spored,
hemiamylo-
id (type RR)
Narrowly cylindric-clavate
to fusoid, transversely 3-
-septate
This study
Mycol Progress (2019) 18:833845 837
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Phylogenetic analysis
Phylogenetic analyses were performed based on a combined
LSU, mtSSU and ITS molecular dataset. We cited all represen-
tative sequences within the order Ostropales through BLAST
searches against GenBank using newly generated sequences
and recent studies (Baloch et al. 2009,2010; Fernández-Brime
et al. 2011,2018). Placopsis cribellans (KS167), P. perrugosa
(KS168) and Trapelia coarctata (KS46) were regarded as
outgroupings. Single-gene sequence was aligned using
MAFFT v.7.110 online version (Katoh and Standley 2013)
and manually adjusted with BioEdit v. 7.0 (Hall 2004). The
congruence of overall topology was affirmed after a single-
gene sequence data compared, and consensus sequences were
allied by Mesquite v. 3.11 (build 766) (Maddison and Maddison
19972016). The evolutionary model was determined indepen-
dently for each gene using MrModeltest 2.2 under the Akaike
Information Criterion (AIC) (Nylander 2004). The best-fit mod-
el (GTR + I + G) was selected finally in the analysis.
Maximum likelihood analysis was run by applying the
CIPRES Science Gateway Web Server (Miller et al. 2010)with
default parameters in RAxML-HPC2 on XSEDE (8.2.10)
(Stamatakis 2014). Maximum likelihood bootstrap values
(MLBP) equal or greater than 50% were provided (Fig. 1).
Bayesian analysis was performed by using MrBayes v. 3.2.2
(Ronquist and Huelsenbeck 2003). The Bayesian inference of
the phylogeny was carried out by a Markov chain Monte Carlo
with Metropolis coupling (MCMCMC). Six simultaneous
Markov chains were run for 8,000,000 generations and trees
were sampled every 100th generation, and the program was
automatically terminated when the average standard deviation
of split frequencies reached below 0.01 (Maharachchikumbura
et al. 2015). Bayesian Posterior Probabilities (BYPP) equal or
greater than 0.95 were given (Fig. 1).
The phylograms were visualized in FigTree v. 1.4.3
(Rambaut and Drummond 2008), and additionally, layouts
were compiled with Adoble Illustrator CS6 v. 16.0.0.
Alignments were submitted to TreeBase (http://www.
treebase.org, ID number 23698).
Results
Phylogenetic analyses
The DNA matrix contains 41 taxa (Table 2) with 4460 characters
including gaps (2262 characters for LSU, 969 for mtSSU and
1229 for ITS). Single-gene datasets of LSU, mtSSU and ITS were
initially analysed and checked for topological congruence, but
these were not significantly different (data not shown). The phy-
logenetic trees were carried out from ML analyses which are the
best scoring trees (Fig. 1) and basically similar to recent studies
(Baloch et al. 2013;Fernández-Brimeetal.2018).
The alignment had 2371 distinct alignment patterns, and
the final optimization likelihood value was 30,870.705671.
Estimated base frequencies were as follows: A = 0.275588,
C = 0.215112, G = 0.262566 and T = 0.246735, with substitu-
tion rates AC = 0.995809, AG = 1.703836, AT = 1.823362,
CG = 0.827656, CT = 4.343897 and GT = 1.000000. The
gamma distribution shape parameter α= 0.406018 and the
tree length= 3.598570. Bayesian posterior probabilities were
determined by MCMCMC, and the final average standard
deviation of split frequencies was 0.009397.
Parakarstenia phyllostachydis clusters within the family
Odontotremataceae with moderate support (78% MLBP/0.99
BYPP). The multigene analyses show that our new genus is
phylogenetically close to the genus Karstenia Fr. with moder-
ately supported value in maximum likelihood analysis (80%
MLBP) and appears to be sister to the genus Coccomycetella
and Odontotrema (61% MLBP/0.98 BYPP).
Taxonomy
Parakarstenia C.L. Yang, H.O. Baral & X.L. Xu, gen. nov.
MycoBank number: MB 829065
Etymology: name reflects a relationship and partial mor-
phological similarity with the genus Karstenia.
Type species: Parakarstenia phyllostachydis C.L. Yang,
H.O. Baral & X.L. Xu.
Parasitic on living to nearly dead stems. Sexual morph:
Apothecia initially immersed, intracortical, raising the sub-
strate and rupturing it to form sessile fruiting bodies, scattered
to gregarious, usually confluent, becoming erumpent,
obrotund to irregular shape, flat to slightly convex, white to
pale brown, turning concave, brown to fuscous when dry,
periphysoids lacking, without any crystals. Receptacle hair-
less, pale yellowish-cream. Ectal excipulum of vertically
Mycol Progress (2019) 18:833845 839
and LR5 (Vilgalys and Hester 1990), NS1 and NS4, ITS1 and
ITS4 (White et al. 1990) and EF1-983F and EF1-2218R
(Rehner 2001) primers were used for the amplification of large
subunit rDNA (28S, LSU), small subunit rDNA (18S, SSU),
internal transcribed spacers (5.8S, ITS) and translation elon-
gation factor 1-αgene region (TEF1-α) respectively. The
PCR procedure in 25-μl reactions was carried out as outlined
by Dai et al. (2016). The PCR products were purified and
sequenced by TsingKe Biological Technology Co., Ltd.
(Chengdu, China). The newly generated sequences were sub-
mitted to GenBank and the others included in this study were
retrieved from GenBank or UNITE (https://unite.ut.ee/search.
php#fndtn-panel2)(Table2).
Fig. 2 Parakarstenia phyllostachydis (SICAU 16-0002, holotype). ac
Gross morphology of apothecia on natural substrate (fresh state). d
Apothecium in median section. eBasal part with medullary excipulum.
fEctal excipulum at flanks. g,hMargin at flanks. All in sterilized water.
Scale bars: a,b2 mm, c500 μm, d,e50 μm, fh20 μm
Author's personal copy
840 Mycol Progress (2019) 18:833845
Author's personal copy
oriented textura prismatica or irregularly oriented textura
globosa-angularis, hyaline to pale greyish to greyish-brown-
ish, inner cells more thick-walled and larger than thin-walled
outer cells. Medullary excipulum of small-celled textura
angularis, hyaline to pale brown. Hymenium hyaline, pale
brown above, gelatinized. Asci cylindrical to clavate, 8-
spored, stipitate, apex strongly conical, with or without apical
wall thickening, entire ascus wall hemiamyloid. Ascospores
narrowly cylindrical-clavate to fusoid (vermiform), straight to
medium curved, hyaline, without gelatinous sheath, trans-
versely multiseptate. Paraphyses densely arranged, filiform,
hyaline, septate, branched, curved above, with more or less
thick gelatinous sheath. Asexual morph: Unknown.
Notes: Phylogenetic analyses based on a combined ITS, LSU
and mtSSU sequence dataset (Fig. 1)showthatParakarstenia is
closely related to Karstenia and both form a sister clade to
Coccomycetella and Odontotrema within Odontotremataceae.
These evolutionary relationships are comparatively poorly sup-
ported with the dataset analysed, besides the fact that molecular
data of very few taxa of Odontotremataceae are currently avail-
able. When comparing the DNA sequence data of the men-
tioned taxa, the base pair discrepancies are above 7.5% for
LSU and above 20% for ITS.
Morphologically, Karstenia shares some characters with
Parakarstenia, but it also shows several significant differences
(Karsten 1885; Sherwood 1977,1980; Graddon 1986;
Wilberforce 1999; Personal observations by second author), such
as apothecia immersed with their broad base in the substrate by
lifting large lobes of host tissue; with an irregularly dentate,
strongly protruding margin, with periphysoids reaching down to
hymenial base; with ascospores often above 5-septate. The mor-
phological delimitation among these similar genera is summa-
rized in Table 3. Other gene regions gained from
P. phyllostachydis include SSU (MG214899) and TEF 1-α
(MG214900) and are available for further analyses. Based on
comprehensive analyses of phenotypic and nucleotide differ-
ences combined with multigene phylogenies, a new non-
lichenized genus Parakarstenia is introduced within
Odontotremataceae to accommodate the new species
P. phyllostachydis,as recommended by Jeewon and Hyde (2016).
Parakarstenia phyllostachydis C.L. Yang, H.O. Baral &
X.L. Xu, sp. nov.
Mycobank number: MB 829066, Figs. 2,3and 4.
Etymology: phyllostachydis, referring to the host plant on
which the new species was collected.
Holotype: SICAU 16-0002.
Parasitic on living to nearly dead stems of Phyllostachys
heteroclada (Poaceae). Sexual morph: Apothecia sessile,
gregarious or scattered, without subiculum, usually confluent,
margin often with a white rim, subsequently inconspicuous,
not protruding. Receptacle lower part covered to varying ex-
tent by host epidermis, usually also at margin with some small
adherent host residues. Ectal excipulum 40160 μmthickat
flanks, cells at flanks and margin 511.5(14) × (2.5)3.5
6(7) μm, 3080 μm thick at margin, marginal cortical cells
3.56×34.5 μm, oriented at high angle. Medullary
excipulum 130240 μm thick in center, 2090 μmthickat
margin, cells (2)2.23.9(5.4) μm. Hymenium (94)119
186(210) μmthick.Subhymenium (6)9.515(16) μm
thick. Asci (95.5)122139(145) × (8.5)13.7
18.3(23.2) μm(
x=130.7×16 μm, n= 30), stipitate, stipe
1223 μm long, apex thin-walled or sometimes with a 1
2.5-μm-thick apical wall thickening, entire outer wall and api-
cal thickening deep red in IKI (I+ hemiamyloid, type RR),
KOH/IKI deep blue (difficult to observe individually due to
gelatinized hymenium). Ascospores (40)4251(
61.3) × (3)3.34.1(4.7) μm(
x= 46.5 × 3.8 μm, n=30),fi-
nally (2)3(4)-septate, rarely multiseptate (511-septate),
parallel or intertwined in the upper part of the dead asci, con-
taining a medium amount of lipid, multiguttulate. Paraphyses
sporadically branched below apex, occasionally anastomos-
ing, 1.42.0(2.4) μm wide from base to tip, twisted into coils
or spirals at the apex, forming a (7)8.514.5(18) μm thick
pale brownish epithecium.
Material examined: CHINA, Sichuan Province, Yaan
City, Yucheng District, Yanchang Township, alt. 951 m, 29°
4333.95N103°444.4E, on living to nearly dead stems of
Phyllostachys heteroclada, 8 April 2016, C.L. Yang & X.L.
Xu, YCL201604001 (SICAU 16-0002, holotype).
Discussion
Parakarstenia has distinct characters that can separate it from
other genera in Odontotremataceae in having a non-
periphysoid apothecium, absence of crystals and a conical
ascus apex. It is the first report of a member of Ostropales that
parasitizes on living stems of bamboo, and the remaining gen-
era in this family are mostly saprophytes on ligneous plants or
mosses (Nylander 1857;Rehm1881; Shaw and Hawksworth
1971;Döbbeler1996,1999,2003,2006; Evans et al. 2010;
Barreto et al. 2012; Holien and Diederich 2012). The discov-
ery of Parakarstenia broadens the familial concept of
Odontotremataceae. Most odontotremataceous genera were
erected merely based on morphology, and for most species,
the phylogenetic status remains unclear due to the lack of
molecular data. Most genera only include 12 described spe-
cies, Potriphila 3speciesandonlyaround1528 valid species
are recorded at present in this family (Sherwood-Pike 1987;
Mycol Progress (2019) 18:833845 841
Fig. 3 Parakarstenia phyllostachydis (SICAU 16-0002, holotype). a,b
Paraphyses. c,dTwisted and intertwined paraphyses at the apex (cin
water, din MLZ). ehAsci (ein water, fhin Congo red). ivAscospores
(ioin water, pvin MLZ). Scale bars: ah20 μm, iv10 μm. Living
state (at least partly) in ab,ij,ln
Author's personal copy
842 Mycol Progress (2019) 18:833845
Author's personal copy
Jaklitsch et al. 2016; Diederich et al. 2018; Index Fungorum
2019). Therefore, extensive sampling of genera and species
lacking molecular data is needed and more gene regions
should be extracted in future study.
The genus Karstenia Fr. (non Karstenia Britzelm., nom.
illegit.) was incipiently introduced by Fries (in Karsten 1885),
and its taxonomic placement has always been unclear
(Sherwood 1977,1980,1981; Graddon 1986; Wilberforce
1999). Some mycologists provisionally placed it in
Rhytismatales (Lumbsch and Huhndorf 2007,2010), and subse-
quently,it was transferred to Stictidaceae in Ostropales only based
on morphology (Wijayawardene et al. 2018). Until now, 1011
species are recognized in this genus (Wilberforce 1999; Jaklitsch
et al. 2016; Wijayawardene et al. 2017; Index Fungorum 2019).
Most species of Karstenia lack gene sequence data, and the
phylogenetic placement of the genus is still ambiguous.
Available rDNA sequences in official repositories (GenBank,
UNITE)arethoseofK. rhopaloides (Sacc.) Baral (
Cryptodiscus rhopaloides Sacc.) and K. macer (P. Karst.)
Sherwood (see Table 2). Whether the type of Karstenia,
K. sorbina (P. Karst.) P. Karst., belongs in the current concept
of the genus requires a thorough restudy of the holotype. This
restudy should include clarification of ascus amyloidity, which
Sherwood (1977) reported as absent perhaps because of using
MLZ without KOH-pretreatment. We here follow the current
concept of Karstenia and propose a new genus for the here
described, morphologically distinct species.
Based on our three gene phylogenetic analyses (Fig. 1), we
here transfer Karstenia to the family Odontotremataceae. Its
morphological characteristics are basically consistent with
other members of Odontotremataceae, such as a non-
crystalline apothecial margin, pronounced periphysoids and
vermiform, cylindrical to clavate ascospores (Sherwood
1977; Wilberforce 1999).
Acknowledgements Chun-Lin Yang warmly thanks Xue Wang, Ming
Liu, Li-Juan Liu, and Ren-Hua Chen for their help of laboratory work.
Funding information Xiu-Lan Xu received support from the Resources
Investigation of Entomopathogenic Fungi in Sichuan Province and its
Controlling Benefits to Forest Pests (Grant number: 510100-
201700290-2017-00363).
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... A similar symptom record has been reported for fishscale bamboo (P. heteroclada) in Sichuan Province (103 • 3 0.41 E, 30 • 1 5.85 N), China, and three fungal species, Parakarstenia phyllostachydis, Neostagonosporella sichuanensis, and Podonectria sichuanensis, were collected and identified from the lesion tissues; nevertheless, none of them were tested in terms of their pathogenicity toward fishscale bamboo [6][7][8]. In addition, Fusarium oxysporum was considered the pathogen of rhomboid rot in Moso bamboo in Jiangxi Province (114 • 7 4.48 E, 26 • 39 18.29 N), China [9]. ...
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Culm rhomboid rot is a new disease of Moso bamboo (Phyllostachys edulis) and mainly occurs on Moso bamboo grown at an altitude above 800 m. The typical symptoms start with black spots and irregular shapes, which expand vertically into an elongated, fusiform, or rhomboid shape up to 15 cm in length. Eleven fungal isolates were isolated from infected tissue, and the isolate BBB1 was confirmed as the pathogen following Koch’s postulates in vitro and in vivo. Regarding morphology, BBB1 was identified as Arthrinium sp.–conidia single-celled, brown to dark, smooth, globose to subglobose, with an equatorial slit, 5.0–9.3 × 3.1–7.3 μm in size. The conidiophores were reduced to conidiogenous cells, pale brown to dark, smooth, and ampulliform. Phylogenetic analysis based on ITS-TEF1-α-TUB2 concatenate sequences identified BBB1 as A. arundinis. Furthermore, the sensitivity of the pathogen against six common fungicides was investigated with mycelial growth assays. Prochloraz exhibited the most potent inhibition with an EC50 value of 0.019 mg/L; another effective fungicide was difenoconazole, with an EC50 value of 0.195 mg/L. This is the first report of A. arundinis causing culm rhomboid rot of Moso bamboo in China; the results provide a basis for managing Moso bamboo culm rhomboid rot.
... The previous studies have revealed a high fungal diversity associated with bamboo Phyllostachys. In recent years, 10 species belonging to seven genera have been described from bamboo of Phyllostachys, including two new genera, Neostagonosporella and Parakarstenia, established by Yang et al. on P. heteroclada in Sichuan Province [54,58,[63][64][65][66][67][68][69]. However, the knowledge about bambusicolous fungi is incomplete and mainly remains at cataloguing stage [14]. ...
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In the present study, we surveyed the ascomycetes from bamboo of Phyllostachys across Sichuan Province, China. A biphasic approach based on morphological characteristics and multi-gene phylogeny confirmed seven species, including one new genus, two new species, and five new host record species. A novel genus Paralloneottiosporina is introduced to accommodate Pa. sichuanen-sis that was collected from leaves of Phyllostachys violascens. Moreover, the newly introduced species Bifusisporella sichuanensis was isolated from leaves of P. edulis, and five species were newly recorded on bamboos, four species belonging to Apiospora, viz. Ap. yunnana, Ap. neosubglobosa, Ap. jiang-xiensis, and Ap. hydei, and the last species, Seriascoma yunnanense, isolated from dead culms of P. heterocycla. Morphologically similar and phylogenetically related taxa were compared. Comprehensive descriptions, color photo plates of micromorphology are provided.
... There are currently 32 genera in the family Stictidaceae, including 19 sexual, 5 asexual, 7 sexual and asexual, and 1 monotypic genus (Kohlmeyer & Volkmann 1996, Schoch et al. 2006, Wei et al. 2021. In the previous studies, singlegene LSU/SSU was used to classify Stictidaceae (Winka et al. 1998, Crous et al. 2018, while, recently multigene sequence data LSU-mtSSU-RPB2 and LSU-ITS-mtSSU were used for phylogenetic analyses of Stictidaceae (Baloch et al. 2009, Tibpromma et al. 2018, Yang et al. 2019, Lu et al. 2021, Wei et al. 2021. However, RPB2 is not commonly used in the phylogenetic analyses due to lack of sequences in the family Stictidaceae. ...
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A total of approximately 104,000 fungal species can be expected in Yunnan. However, approximately 6000 fungal species have been reported from the province leaving much to be described. This study introduces a new species, Fitzroyomyces xishuangbannaensis sp. nov and a new collection of Fit. cyperacearum from Yunnan province, China. The taxa were characterized based on morphological characteristics and combined multi-gene phylogenetic analyses. Both maximum likelihood (ML) and Bayesian inference posterior probabilities (PP) were conducted for combined LSU, ITS and mtSSU sequences data. The new Fitzroyomyces species formed a distinct clade among the extant species of Fitzroyomyces with high statistical supports in the phylogenetic analyses while our new isolate nested together with the corresponding strains of Fit. cyperacearum. A key to Fitzroyomyces species and a synopsis table of morphological characteristics for Fitzroyomyces are provided to support the taxonomic placement.
... The closest relatives of the new sequences based on BLAST searches were retrieved from GenBank. Additional taxa were selected mainly from Baloch et al. Yang et al. (2019), in order to include an exhaustive list of taxa belonging to different families of the Ostropales s. lat., and a wide array of taxa belonging to the Gyalectaceae. One nuLSU sequence of Gyalecta leucaspis (AF465462) was not included owing to its poor quality (including 31 'N' distributed throughout the sequence): the species groups with G. ulmi (Sw.) ...
Article
The genus Thelopsis was classified in the family Stictidaceae but its systematic position has never been investigated by molecular methods. In order to determine its family placement and to test its monophyly, fungal DNA of recent collections of Thelopsis specimens was sequenced. Phylogenetic analyses using nuLSU, RPB 2 and mtSSU sequences reveal that members of Thelopsis form a monophyletic group within the genus Gyalecta as currently accepted. The placement of Thelopsis , including the generic type T. rubella , within the genus Gyalecta challenges the generic circumscription of this group because Thelopsis is well recognized by the combination of morphological characters: perithecioid ascomata, well-developed periphysoids, polysporous asci and small, few-septate ellipsoid-oblong ascospores. The sterile sorediate Opegrapha corticola is also placed in the Gyalectaceae as sister species to Thelopsis byssoidea + T. rubella . Ascomata of O. corticola are illustrated for the first time and support its placement in the genus Thelopsis . The hypothesis that O. corticola might represent the sorediate fertile morph of T. rubella is not confirmed because the species is phylogenetically and morphologically distinct. Thelopsis is recovered as polyphyletic, with T. melathelia being placed as sister species to Ramonia . The new combinations Thelopsis corticola (Coppins & P. James) Sanderson & Ertz comb. nov. and Ramonia melathelia (Nyl.) Ertz comb. nov. are introduced and a new species of Gyalecta , G. amsterdamensis Ertz, is described from Amsterdam and Saint-Paul Islands, characterized by a sterile thallus with discrete soralia. Petractis luetkemuelleri and P. nodispora are accommodated in the new genus Neopetractis , differing from the generic type ( P. clausa ) by having a different phylogenetic position and a different photobiont. Francisrosea bicolor Ertz & Sanderson gen. & sp. nov. is described for a sterile sorediate lichen somewhat similar to Opegrapha corticola but having an isolated phylogenetic position as sister to a clade including Gyalidea praetermissa and the genera Neopetractis and Ramonia . Gyalecta farlowii , G. nidarosiensis and G. carneola are placed in a molecular phylogeny for the first time. The taxonomic significance of morphological characters in Gyalectaceae is discussed.
... Ostropales was introduced by Nannfeldt in 1932 to encompass a single family Ostropaceae, which is a younger synonym of Stictidaceae [19]. Various molecular studies have been conducted to resolve the phylogenetic relationships within Ostropales [18][19][20][21][22][23][24][25][26][27][28]. The delimitation of Ostropales has changed over time due to a high level of morphological plasticity [18,19], and the taxonomy of various groups remains unresolved [29]. ...
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Ostropales sensu lato is a large group comprising both lichenized and non-lichenized fungi, with several lineages expressing optional lichenization where individuals of the same fungal species exhibit either saprotrophic or lichenized lifestyles depending on the substrate (bark or wood). Greatly variable phenotypic characteristics and large-scale phylogenies have led to frequent changes in the taxonomic circumscription of this order. Ostropales sensu lato is currently split into Graphidales, Gyalectales, Odontotrematales, Ostropales sensu stricto, and Thelenellales. Ostropales sensu stricto is now confined to the family Stictidaceae, which includes a large number of species that are poorly known, since they usually have small fruiting bodies that are rarely collected, and thus, their taxonomy remains partly unresolved. Here, we introduce a new genus Ostropomyces to accommodate a novel lineage related to Ostropa, which is composed of two new species, as well as a new species of Sphaeropezia, S. shangrilaensis. Maximum likelihood and Bayesian inference analyses of mitochondrial small subunit spacers (mtSSU), large subunit nuclear rDNA (LSU), and internal transcribed spacers (ITS) sequence data, together with phenotypic data documented by detailed morphological and anatomical analyses, support the taxonomic affinity of the new taxa in Stictidaceae. Ancestral character state analysis did not resolve the ancestral nutritional status of Stictidaceae with confidence using Bayes traits, but a saprotrophic ancestor was indicated as most likely in a Bayesian binary Markov Chain Monte Carlo sampling (MCMC) approach. Frequent switching in nutritional modes between lineages suggests that lifestyle transition played an important role in the evolution of this family.
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While conducting a survey of bambusicolous fungi in northern Thailand and southwestern China, several saprobic fungi were collected from dead branches, culms and twigs of bamboos, which were preliminarily identified as species belonging to Pleosporales (Dothideomycetes) based on a morphological approach. Multigene phylogenetic analyses based on ITS, LSU, SSU, rpb2, tef1-α and tub2 demonstrated four novel taxa belonging to the families Parabambusicolaceae, Pyrenochaetopsidaceae and Tetraploasphaeriaceae. Hence, Paramultiseptospora bambusae sp. et gen. nov., Pyrenochaetopsis yunnanensis sp. nov. and Tetraploa bambusae sp. nov. are introduced. In addition, Anastomitrabeculia didymospora found on bamboo twigs in terrestrial habitats is reported for the first time. Detailed morphological descriptions and updated phylogenetic trees of each family are provided herein.
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Stictidaceae comprises taxa with diverse lifestyles. Many species in this family are drought resistant and important for studying fungal adaptation and evolution. Stictidaceae comprises 32 genera, but many of them have been neglected for decades due to the lack of field collections and molecular data. In this study, we introduce a new species Fitzroyomyces hyaloseptisporus and a new combination Fitzroyomyces pandanicola. We also provide additional morphological and molecular data for Ostropomyces pruinosellus and O. thailandicus based on new collections isolated from an unidentified woody dicotyledonous host in Chiang Rai, Thailand. Taxonomic conclusions are made with the aid of morphological evidence and phylogenetic analysis of combined LSU, ITS and mtSSU sequence data. Characteristics such as the shape and septation of ascospores and conidia as well as lifestyles among genera of Stictidaceae are discussed.
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Immotthia is a poorly known genus, and currently, no DNA sequence data are available to ascertain its proper phylogenetic placement and evolutionary relationships with other bitunicate fungi. To date, there are only two species accepted in the genus. During our ongoing research study of bambusicolous fungi in southwest China and Thailand, a fungus associated with stromata of Hypoxylon sp. was found on dead bamboo culms in Loei Province, Thailand. Preliminary morphological identification revealed that the fungal collection belongs to Immotthia. A novel species, Immotthia bambusae, is introduced herein based on a comparison of morphological characteristics with the type specimen of I. hypoxylon (≡ Amphisphaeria hypoxylon Ellis and Everh.), a synonym of I. atrograna (Cooke and Ellis) M. E. Barr. Phylogenetic analyses of a concatenated ITS, LSU, SSU, and TEF1-α DNA sequence matrix showed that Immotthia belongs to Dictyosporiaceae, Pleosporales. Despite I. bambusae strains constituting a supported subclade, they are nested with the genus Pseudocoleophoma. Pseudocoleophoma clematidis is morphologically different from all other Pseudocoleophoma species, while its conidial characteristics are similar to Cyclothyriella. Multigene phylogenetic analyses showed that P. clematidis formed a clade basal to Immotthia, separated from Pseudocoleophoma with strong statistical support. Therefore, we introduce a monotypic genus, Pseudocyclothyriella Phukhams. and Phookamsak, gen. nov. to accommodate the single species, Pseudocyclothyriella clematis (Phukhams. and K. D. Hyde) Phukhams. and Phookamsak, comb. nov. Detailed descriptions, color micrographs, and phylogenetic trees to show the placement of the new taxa are provided. In addition, an updated taxonomic treatment of the genera Immotthia and Pseudocyclothyriella is also provided based on the study of the type materials and phylogeny generated from DNA sequence data.
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Biodiversity of Ascomycota fungi in Serbia is still scarcely known although mostly phytopathogenic literature data can be found from the last decade, including previous checklists for classes Leotiomycetes and Pezizomycetes. This paper presents data on the new findings of fungal species of the classes Leotiomycetes and Pezizomycetes in Serbia, found mainly in the period from 2016 to 2020. Only those species whose presence is not mentioned in the existing checklists are included in the presented list.
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Taxonomic ranks above the species level are inherently arbitrary. However, there is a growing number of publications aimed at more consistent classifications with comparable ranks among taxa. For this study, we use a recently developed temporal approach that utilizes time-calibrated chronograms to identify and define temporal bands for comparable ordinal and family ranks in Lecanoromycetes, the most diverse lineage of lichen-forming fungi. A multilocus dataset consisting of 539 taxa in the two major subclasses of Lecanoromycetes, Lecanoromycetidae and Ostropomycetidae, was used to address the circumscription of families and orders. Based on the temporal banding approach, clades that share a common ancestor between 176 and 194 Mya and a time window of 111-135 Mya correspond to order-level and family-level, respectively. Most currently accepted orders and families were supported in their current circumscription, but some new taxa are described. Here we propose a revised, temporally based classification for the two subclasses. Specifically, three new orders are proposed: Sporastatiales, Schaereriales and Thelenellales. Arctomiales, Hymeneliales and Trapeliales are synonymized with Baeomycetales. Varicellariaceae are proposed as a new family, and Diploschistaceae and Thelotremataceae are resurrected. Squamarinaceae and Stereocaulaceae are synonymized with Cladoniaceae, Carbonicolaceae are synonymized with Lecanoraceae, Letrouitiaceae are synonymized with Brigantiaeaceae, Lobariaceae and Nephromataceae are synonymized with Peltigeraceae, Thrombiaceae are synonymized with Protothelenellaceae, and Miltideaceae are synonymized with Agyriaceae. This study represents an important step towards more consistent, comparable deeper-level taxonomic rankings in the most diverse lineages of lichen-forming fungi.
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Lichenicolous fungi represent a highly specialized and successful group of organisms that live exclusively on lichens, most commonly as host-specific parasites, but also as broad-spectrum pathogens, saprotrophs or commensals. We present here the most recent update to the classification of lichenicolous fungi in the Ascomycota and Basidiomycota to genus level, arranged phylogenetically according to published classifications. For each genus, all known lichenicolous taxa (obligately lichenicolous taxa, lichenicolous lichens, and facultatively lichenicolous taxa) are listed, along with information about types, synonyms, pertinent literature and whether or not molecular data are available for any of the listed species. The number of accepted lichenicolous fungi is now 2319, with 2000 obligately lichenicolous species, subspecies or varieties, 257 lichenicolous lichens and 62 facultatively lichenicolous taxa. These species are found in 10 different classes of Fungi (Ascomycota and Basidiomycota), 55 orders, 115 families and 397 genera. The 2319 total taxa is an increase from the 1559 total species reported in the last published catalogue in 2003, and a larger number than the approximately 1800 reported in the most recent online checklist (www.lichenicolous.net) posted in January 2018. Of the total number of taxa, 2219 (96%) are ascomycetes and 100 (4%) are basidiomycetes. Of the 397 genera containing lichenicolous species, c. 50% (198) are entirely lichenicolous. In addition, six families (Abrothallaceae, Adelococcaceae, Cyphobasidiaceae, Obryzaceae, Polycoccaceae, Sarcopyreniaceae) and two orders (Abrothallales, Cyphobasidiales) are entirely lichenicolous. Sequence information is available for lichenicolous species in 128 (32%) of the 397 genera containing lichenicolous species, and in 56 (28%) of the 198 entirely lichenicolous genera. Many species are known from only one host lichen, but it is likely that broader host ecologies will be discovered as new sequence information is obtained from ongoing microbiome studies. Phaeopyxis Rambold & Triebel is considered as a new synonym of Bachmanniomyces D.Hawksw., resulting in five new combinations B. australis (Rambold & Triebel) Diederich & Pino-Bodas (≡ P. australis), B. carniolicus (Arnold) Diederich & Pino-Bodas (≡ Biatora carniolica), B. muscigenae (Alstrup & E.S.Hansen) Diederich & Pino-Bodas (≡ P. muscigenae), B. punctum (A.Massal.) Diederich & Pino-Bodas (≡ Nesolechia punctum) and B. varius (Coppins, Rambold & Triebel) Diederich & Pino-Bodas (≡ P. varia). As a consequence of a phylogenetic analysis including new sequences, Dactylospora Körb. is regarded as a new synonym of Sclerococcum Fr.: Fr., resulting in one new name (S. acarosporicola Ertz & Diederich) and 46 new combinations. Sclerococcaceae Réblová, Unter. & W.Gams is considered as a new synonym of Dactylosporaceae Bellem. & Hafellner. The new Sclerococcum ophthalmizae Coppins is described. Sclerophyton occidentale Herre is lectotypified on the lichenicolous fungus present in the type specimen and becomes a younger synonym of Sclerococcum parasiticum. A replacement name is Arthonia polydactylonis Diederich & Ertz (≡ A. ceracea). Further new combinations are Abrothallus lobariae (Diederich & Etayo) Diederich & Ertz (≡ Phoma lobariae), A. psoromatis (Zhurb. & U. Braun) Diederich & Zhurb. (≡ P. psoromatis), Asteroglobulus pyramidalis (Etayo) Diederich (≡ Cornutispora pyramidalis), Didymocyrtis grumantiana (Zhurb. & Diederich) Zhurb. & Diederich (≡ Phoma grumantiana), Epithamnolia atrolazulina (Etayo) Diederich (≡ Hainesia atrolazulina), Gyalolechia epiplacynthium (Etayo) Diederich (≡ Fulgensia epiplacynthium), Nesolechia doerfeltii (Alstrup & P.Scholz) Diederich (≡ Phacopsis doerfeltii), N. falcispora (Triebel & Rambold) Diederich (≡ P. falcispora), N. oxyspora var. fusca (Triebel & Rambold) Diederich (≡ P. oxyspora var. fusca), Preussia peltigerae (Brackel) Diederich (≡ Sporormiella peltigerae), Scutula curvispora (D.Hawksw. & Miadl.) Diederich (≡ Libertiella curvispora), S. didymospora (D.Hawksw. & Miadl.) Diederich (≡ L. didymospora), Stigmidium haesitans (Nyl.) Diederich (≡ Verrucaria haesitans), and S. parvum (Henssen) Diederich (≡ Pharcidia parvum). © 2018 by The American Bryological and Lichenological Society, Inc.
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