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Gupta, M., Naqvi, N., Kumar, P. (2017). i AMF – Centralized database of arbuscular mycorrhizal distribution, phylogeny and taxonomy. Journal of Recent Advances in Applied Sciences, 30 (1). 1 - 5 < http://www.jraas.org/ >
Abstract
Arbu
scular mycorrhizal fungal database, named
i
AMF (
www.amfungi.aurobindo.du.ac.in
) is first digital database on
biodiversity and phylogeny of these beneficial fungi in India. It provides access to data on 161 species of arbuscular
mycorrhizal fungi (AMF) along with comprehensive information on their GPS location of reported occurrence,
taxonomy,
molecular sequence, phylogeny and bibliography. The database is based on primary data collected by authors through
ongoing surveys (year 2009
-
2017) and secondary data from earlier studies (2008
–
2016). Data is carefully curated to verify
that it
corresponds to the reference publication and a valid species name is used. Apart from being ecological meta
-
analysis
data source, it would have significant application
in selection of non
-
indigenous AMF inoculum in agriculture, reforestation,
horticultural
and land reclamation practices.
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Zygomycete fungi were classified as a single phylum, Zygomycota, based on sexual reproduction by zygospores, frequent asexual reproduction by sporangia, absence of multicellular sporocarps, and production of coenocytic hyphae, all with some exceptions. Molecular phylogenies based on one or a few genes did not support the monophyly of the phylum, however, and the phylum was subsequently abandoned. Here we present phyloge-netic analyses of a genome-scale data set for 46 taxa, including 25 zygomycetes and 192 proteins, and we demonstrate that zygomycetes comprise two major clades that form a paraphyletic grade. A formal phylogenetic classification is proposed herein and includes two phyla, six subphyla, four classes and 16 orders. On the basis of these results, the phyla Mucoromycota and Zoopago-mycota are circumscribed. Zoopagomycota comprises Entomophtoromycotina, Kickxellomycotina and Zoopa-gomycotina; it constitutes the earliest diverging lineage of zygomycetes and contains species that are primarily parasites and pathogens of small animals (e.g. amoeba, insects, etc.) and other fungi, i.e. mycoparasites. Mucor-omycota comprises Glomeromycotina, Mortierellomy-cotina, and Mucoromycotina and is sister to Dikarya. It is the more derived clade of zygomycetes and mainly consists of mycorrhizal fungi, root endophytes, and decomposers of plant material. Evolution of trophic modes, morphology, and analysis of genome-scale data are discussed.
Experiences worldwide reveal that degraded lands restoration projects achieve little success or fail. Hence, understanding the underlying causes and accordingly, devising appropriate restoration mechanisms is crucial. In doing so, the ever-increasing aspiration and global commitments in degraded lands restoration could be realized. Here we explain that arbuscular mycorrhizal fungi (AMF) biotechnology is a potential mechanism to significantly improve the restoration success of degraded lands. There are abundant scientific evidences to demonstrate that AMF significantly improve soil attributes, increase above and belowground biodiversity, significantly improve tree/shrub seedlings survival, growth and establishment on moisture and nutrient stressed soils. AMF have also been shown to drive plant succession and may prevent invasion by alien species. The very few conditions where infective AMF are low in abundance and diversity is when the soil erodes, is disturbed and is devoid of vegetation cover. These are all common features of degraded lands. Meanwhile, degraded lands harbor low levels of infective AMF abundance and diversity. Therefore, the successful restoration of infective AMF can potentially improve the restoration success of degraded lands. Better AMF inoculation effects result when inocula are composed of native fungi instead of exotics, early seral instead of late seral fungi, and are consortia instead of few or single species. Future research efforts should focus on AMF effect on plant community primary productivity and plant competition. Further investigation focusing on forest ecosystems, and carried out at the field condition is highly recommended. Devising cheap and ethically widely accepted inocula production methods and better ways of AMF in situ management for effective restoration of degraded lands will also remain to be important research areas.
Mycorrhizal associations are recognized as key symbioses in a changing world, yet our understanding of their geographic distribution and temporal dynamics remains limited. We combined data on mycorrhizal associations and historical dominant vegetation to map the pre-European Settlement mycorrhizal associations of the conterminous United States of America (USA). As a demonstration of the map's utility, we estimated changes in mycorrhizal associations due to urbanization, agriculture and the establishment of non-native species in two regions. We found that the conterminous USA was dominated by vegetation associated with arbuscular mycorrhizas, but that ∼40% of vegetation types included multiple mycorrhizal associations. Shifting land use to agriculture and the introduction of non-native species has disproportionately affected ectomycorrhizas, as did urbanization. These preliminary results set a baseline for mycorrhizal biogeography of the USA and illustrate how synthesis of available data can help us understand the impact of anthropogenic changes on an important mutualism.
Plants form belowground associations with mycorrhizal fungi in one of the most common symbioses on Earth. However, few large-scale generalizations exist for the structure and function of mycorrhizal symbioses, as the nature of this relationship varies from mutualistic to parasitic and is largely context-dependent. We announce the public release of MycoDB, a database of 4,010 studies (from 438 unique publications) to aid in multi-factor meta-analyses elucidating the ecological and evolutionary context in which mycorrhizal fungi alter plant productivity. Over 10 years with nearly 80 collaborators, we compiled data on the response of plant biomass to mycorrhizal fungal inoculation, including meta-analysis metrics and 24 additional explanatory variables that describe the biotic and abiotic context of each study. We also include phylogenetic trees for all plants and fungi in the database. To our knowledge, MycoDB is the largest ecological meta-analysis database. We aim to share these data to highlight significant gaps in mycorrhizal research and encourage synthesis to explore the ecological and evolutionary generalities that govern mycorrhizal functioning in ecosystems.
The global biogeography of microorganisms remains largely unknown, in contrast to the well-studied diversity patterns of macroorganisms. We used arbuscular mycorrhizal (AM) fungus DNA from 1014 plant-root samples collected worldwide to determine the global distribution of these plant symbionts. We found that AM fungal communities reflected local environmental conditions and the spatial distance between sites. However, despite AM fungi apparently possessing limited dispersal ability, we found 93% of taxa on multiple continents and 34% on all six continents surveyed. This contrasts with the high spatial turnover of other fungal taxa and with the endemism displayed by plants at the global scale. We suggest that the biogeography of AM fungi is driven by unexpectedly efficient dispersal, probably via both abiotic and biotic vectors, including humans.
Copyright © 2015, American Association for the Advancement of Science.
The roots of most plants are colonized by symbiotic fungi to form mycorrhiza, which play a critical role in the capture of nutrients from the soil and therefore in plant nutrition. Mycorrhizal Symbiosis is recognized as the definitive work in this area. Since the last edition was published there have been major advances in the field, particularly in the area of molecular biology, and the new edition has been fully revised and updated to incorporate these exciting new developments. . Over 50% new material . Includes expanded color plate section . Covers all aspects of mycorrhiza . Presents new taxonomy . Discusses the impact of proteomics and genomics on research in this area.
We analysed the spatial distribution patterns of plant species’ arbuscular mycorrhizal status across an intermediate geographical scale (i.e. the country of Germany) and related this distributions to environmental drivers. Three levels of arbuscular mycorrhizal status of plant species could be defined: (1) obligate arbuscular mycorrhizal species that are always colonised by mycorrhizal fungi, (2) facultative arbuscular mycorrhizal species that are colonised under some conditions but not colonised under others and (3) non-mycorrhizal species that are never found to be colonised by mycorrhizal fungi. We aimed to investigate whether plant species assemblages at the studied grid cell scale are composed of different proportions of species regarding their arbuscular mycorrhizal status, and whether the variation of these proportions can be linked to the geographical variation of ecological and environmental factors. We fitted a vector generalised additive model (VGAM) for log-ratios of proportions of plant species’ arbuscular mycorrhizal status per grid cell (2859 grid cells, each c. 130 km2). The spatially explicit plant arbuscular mycorrhizal status distribution model was based on environmental predictors related to climate, geology and land use. The spatial distribution of plant arbuscular mycorrhizal status can be explained as a function of nine environmental predictors (D2 = 0.54). Proportion of obligate arbuscular mycorrhizal plant species per grid cell increased with increasing temperature range, mean annual temperature, urban area and area of lime as geological parent material and decreased with increasing area of mixed forest and coniferous forest. Annual temperature range was by far the most important predictor. These results extend the comparative context of former studies that established relationships between mycorrhizal status and other plant characteristics at species level, including those describing species ecological requirements, to a context at the level of assemblages and species distributions. We encourage integrating plant mycorrhizal status as a functional trait in future macroecological analyses.
During the last few years there have been revolutionary changes in understanding of arbuscular mycorrhizal (AM) fungi distribution, conservation and prospecting using computational databases and platforms. In the present study a searchable biodiversity database available at http://amfungi.aurobindo.du.ac.in and www.amfungi.in is presented using MS access and visual basic applications (VBA). A consolidated region-wise distribution checklist of 148 species of AM fungi belonging to 21 genera of the phylum Glomeromycota is developed, which can be searched either species-wise or state-wise to retrieve information about latest consensus classification, type specimen description, apart from occurrence and abundance. We report Funneliformis mosseae to be the most widely distributed species of Glomeromycota in India, present in the largest number of states which is in dissent with earlier reports of Glomus fasciculatum and Glomus macrocarpum as the most widely distributed species. The genus Glomus is represented by the highest number of species followed by Acaulospora and Scutellospora. The states falling in the Western Ghats region, i.e. Karnataka, Goa and Maharashtra, contain more than 68.9 % of total AM fungal species reported from India. Many important states of India especially Himachal Pradesh, North Eastern India which covers the region of Himalayas and Aravallis remain less represented. We hope that the checklist serves as a quick reference for knowing which Glomeromycota are expected at any Indian location and can be further used to fill gaps in world distribution maps of AMF apart from providing latest classification and quick links to the availability of monospore cultures and original species description.
Plant traits have been widely used to characterize different aspects of the ecology of plant species. Despite its wide distribution and its proven significance at the level of individuals, communities, and populations, the ability to form mycorrhizal associations has been largely neglected in these studies so far. Analyzing plant traits associated with the occurrence of mycorrhizas in plants can therefore enhance our understanding of plant strategies and distributions. Using a comparative approach, we tested for associations between mycorrhizal status and habitat characteristics, life history traits, and plant distribution patterns in 1752 species of the German flora (a major part of the Central European flora). Data were analyzed using log-linear models or generalized linear models, both accounting for phylogenetic relationships. Obligatorily mycorrhizal (OM) species tended to be positively associated with higher temperature, drier habitats, and higher pH; and negatively associated with moist, acidic, and fertile soils. Competitive species were more frequently OM, and stress tolerators were non-mycorrhizal (NM), while ruderal species did not show any preference. Facultatively mycorrhizal (FM) species showed the widest geographic and ecological amplitude. Indigenous species were more frequently FM and neophytes (recent aliens) more frequently OM than expected. FM species differed markedly from OM and NM species in almost all analyzed traits. Specifically, they showed a wider geographic distribution and ecological niche. Our study of the relationships between mycorrhizal status and other plant traits provides a comprehensive test of existing hypotheses and reveals novel patterns. The clear distinction between FM and OM + NM species in terms of their ecology opens up a new field of research in plant-mycorrhizal ecology.
The publication of a large number of taxon names at all levels within the arbuscular mycorrhizal fungi (Glomeromycota) has resulted in conflicting systematic schemes and generated considerable confusion among biologists working with these important plant symbionts. A group of biologists with more than a century of collective experience in the systematics of Glomeromycota examined all available molecular-phylogenetic evidence within the framework of phylogenetic hypotheses, incorporating morphological characters when they were congruent. This study is the outcome, wherein the classification of Glomeromycota is revised by rejecting some new names on the grounds that they are founded in error and by synonymizing others that, while validly published, are not evidence-based. The proposed "consensus" will provide a framework for additional original research aimed at clarifying the evolutionary history of this important group of symbiotic fungi.
Minor project entitled -Evaluation of Mycorrhizal status of the region and production of inoculum for economically important plants
Minor project entitled -Evaluation of
Mycorrhizal status of the region and production of
inoculum for economically important plants" University
Grants Commission, 35, Firoze Shah Road, Delhi, India
-110001.2009-11.
The Glomeromycota: a species list with new families and new genera. The Royal Botanic Garden Edinburgh, The Royal Botanic Garden Kew
- A Schüßler
- C Walker
Schüßler A, Walker C, The Glomeromycota: a
species list with new families and new genera. The Royal
Botanic Garden Edinburgh, The Royal Botanic Garden
Kew, Botanische 2010.