ArticlePDF Available

A new rust species of Diaphanopellis on Rhododendron oreodoxa from Southern China

Authors:

Abstract and Figures

A novel rust species Diaphanopellis purpurea on Rhododendron oreodoxa collected in Southern China was identified and described. Light and scanning electron microscopy observations indicated that this rust species was morphologically distinct from other known Diaphanopellis species and Chrysomyxa species in teliospore morphology and urediniospore surface structure. Diaphanopellis purpurea can be phylogenetically separated from other Chrysomyxa species based on analysis of internal transcribed spacer (ITS) partial gene sequences. The aecial stage of the new species was also confirmed.
Content may be subject to copyright.
Phytotaxa 309 (1): 055–065
http://www.mapress.com/j/pt/
Copyright © 2017 Magnolia Press Article PHYTOTAXA
ISSN 1179-3155 (print edition)
ISSN 1179-3163 (online edition)
Accepted by Samantha Karunarathna: 14 May 2017; published: 9 Jun. 2017
https://doi.org/10.11646/phytotaxa.309.1.5
55
Licensed under a Creative Commons Attribution License http://creativecommons.org/licenses/by/3.0
A new rust species of Diaphanopellis on Rhododendron oreodoxa from Southern
China
JING CAO1, CHENG-MING TIAN1, YING-MEI LIANG2 & CHONG-JUAN YOU1*
1The Key Laboratory for Silviculture and Conservation of Ministry of Education, Beijing Forestry University, Beijing 100083, China
2Museum of Beijing Forestry University, Beijing 100083, China
*Corresponding author: chongjuanyou@bjfu.edu.cn
Abstract
A novel rust species Diaphanopellis purpurea on Rhododendron oreodoxa collected in Southern China was identified and
described. Light and scanning electron microscopy observations indicated that this rust species was morphologically distinct
from other known Diaphanopellis species and Chrysomyxa species in teliospore morphology and urediniospore surface
structure. Diaphanopellis purpurea can be phylogenetically separated from other Chrysomyxa species based on analysis of
internal transcribed spacer (ITS) partial gene sequences. The aecial stage of the new species was also confirmed.
Keywords: Molecular phylogeny, phylogeny, Pucciniales, taxonomy
Introduction
Rust genus Diaphanopellis was established by Crane with the type species Diaphanopellis forrestii P. E. Crane
occurring on Rhododendron selense Franch (Crane 2005, Kirk et al. 2008). Diaphanopellis is characterized by the
teliospores enclosed in hyaline sheaths, and the uredinia surrounded by a peridium with ornamented cells (Barclay
1891, Balfour-Browne 1955, Crane 2005). Most rusts infecting Rhododendron belong to the genus Chrysomyxa,
which are morphologically different from Diaphanopellis species in having uredinial peridium and distinct teliospores.
Chrysomyxa species produce catenulate teliospores without gelatineous layers and uredinia covered by an inconspicuous
peridium (Berndt 1999).
During an investigation of rust fungi in China, we collected a rust species on Rhododendron oreodoxa Franch.,
producing urediniospores and teliospores that were different from these of Diaphanopellis forrestii and other known
Chrysomyxa species. In this paper, we described and illustrated this rust as a new species. We also performed
phylogenetic analysis of rDNA to confirm the aecial stage of this new taxon discovered on Picea purpurea.
Materials and methods
Specimen collection and herbaria
Fresh specimens were collected in Sichuan and Yunnan Province in China and deposited at the Mycological Herbarium,
Museum of Beijing Forestry University (BJFC) in China. Herbaria were borrowed from the Mycological Herbarium,
Chinese Academy of Sciences (HMAS). Host plants, locality of collection and accession numbers for sequence data
from GenBank and Barcode of Life Database (BOLD, www.barcodinglife.org) were listed in Table 1.
Morphological characteristics observation
Spores and hand sections of telia were mounted in lactophenol or lactophenol-cotton blue solution on the microscopic
slides. For each specimen, approximately 30 spores were randomly selected and measured using a DM2500 upright
microscope (Leica, Germany). The surface macro-structures of samples were examined by using scanning electron
microscopy (SEM). Aeciospores and urediniospores were adhered onto aluminum stubs covered with double-sided
CAO ET AL.
56 Phytotaxa 309 (1) © 2017 Magnolia Press
adhesive tape, coated with gold using the SCD-005 Sputter Coater (Hitachi, Tokyo, Japan), and then observed using a
S-3400N scanning electron microscope (Hitachi, Tokyo, Japan) operated at 10–15 kV.
DNA extraction, PCR and sequencing
Genomic DNA was extracted using the modified method of Tian et al. (2004). The internal transcribed spacer (ITS)
and 5.8S region of rDNA was amplified with primers ITS1F (5-CTTGGTCATTTAGAGGAAGTAA-3) and ITS4
(5-TCCTCCGCTTATTGATATGC-3) (White et al. 1990, Gardes & Bruns 1993). Amplifications were performed in
25 L of PCR solution containing 1 L of DNA template, 2.5 L of sense primer (2 M), 2.5 L of antisense primer
(2 M), 12.5 L of 2×Es Taq MasterMix (Cwbio, Beijing, China), and 6.5 L of dd H2O.The PCR conditions were as
follows: 94°C for 3 min, 35 cycles of 94°C for 30 s, 50°C for 1 min, and 72°C for 1 min, and a final step of 72°C for
10 min. PCR products were purified and cloned for sequencing (TSINGKE, Beijing, China).
Phylogenetic analysis
The raw sequences obtained were aligned using ClustalX1.83 and MAFFT v.7 (Thomson et al. 1997, Katoh & Standley
2013). We compiled two datasets for phylogenetic analyses: (A) an rDNA ITS dataset that consisted of sequence data
obtained from this study, and rust species of Coleosporiaceae from BOLD (Feau et al. 2011) and GenBank (Table 1),
and (B) a rDNA ITS dataset, which included the related rust genera with Chrysomyxa, representing major lineages of
Pucciniaceae, Pucciniastraceae, Coleosporiaceae, Cronartiaceae and Melampsoraceae (Table 3). Phylogenetic trees
obtained from analyses (A) and (B) were rooted with Melampsora epitea (AY471646) and Puccinia melampodii
(EU659697) respectively. Maximum parsimony (MP) analysis was carried out using the heuristic search option with
1,000 random-addition sequences and tree bisection and reconnection as the branch-swapping algorithm implemented
in PAUP v.4.0b10 (Swofford 2002). In the MP analyses, gaps were treated as missing data, and all characters were
equally weighted. Clade stability was assessed using a bootstrap analysis with 1,000 replicates (Felsenstein 1985).
Tree length (TL), consistency index (CI), retention index (RI), and rescaled consistency (RC) were also calculated.
Bayesian analysis was performed with MrBayes 3.1.2 (Ronquist & Huelsenbeck 2003) using the Markov Chain
Monte Carlo (MCMC) method, the best-fit substitution models were estimated using Modeltest ver. 3.7 based on the
implementation of the Akaike information criterion (AIC) (Posada and Crandall 1998). GTR + I + G was selected as
the best evolutionary model for the rDNA ITS datasets, and the Markov chains were run for 1,000,000 generations.
The trees were sampled every 100 generations, resulting in 10,000 total trees. Sequence alignments were deposited at
TreeBase (http://www.treebase.org/) under the accession number 19266.
TABLE 1. Sequence data analyzed in this study or obtained from GenBank and BOLD. (new species in bold).
Fungal taxon Host plant Specimen no Date of
collection
Geograpphic origin GenBank or
BOLD
accession no.(ITS)
Diaphanopellis
purpurea
Picea purpurea BJFC-R02299* 2014-07-21 Sichuan,China KX225401a
Picea purpurea BJFC-R02300* 2014-07-21 Sichuan,China KX225402a
Rhododendron oreodoxa HMAS-55188* 1987-05-01 Sichuan,China KX225403a
Rhododendron oreodoxa BJFC-R01698* 2014-05-21 Sichuan,China KX225404a
Rhododendron oreodoxa BJFC-R01699* 2014-05-21 Sichuan,China KX225405a
Chrysomyxa
arctostaphyli
Picea mariana DAOM 229628 1986-06-30 Klondike Loop, Yukon,
Canada
CHITS040-08b
Arctostaphylos uva-ursi DAOM 183586 1982-06-16 Kenora district, Ontario,
Canada
CHITS053-08b
C. cassandrae Picea mariana QFB 25005 2004-09-10 Abitibi, Quebec, Canada CHITS052-08b
Chamaedaphne
calyculata
QFB 25007 2006-08-06 Le ´vis, Quebec, Canada CHITS004-08b
C. chiogenis Gaultheria hispidula QFB 25026 2007-06-22 Charlevoix, Quebec,
Canada
CHITS022-08b
Gaultheria hispidula Only DNA extraction 2007-07-25 Charlevoix, Quebec,
Canada
CHITS031-08b
C. empetri Empetrum nigrum QFB 25033 2007-08-04 Radisson, Quebec,
Canada
CHITS032-08b
Empetrum nigrum QFB 25060 2007-09-05 Charlevoix, Quebec,
Canada
CHITS033-08b
...continued on the nex page
A NEW RUST SPECIES OF DIAPHANOPELLIS Phytotaxa 309 (1) © 2017 Magnolia Press 57
TABLE 1. (Continued)
Fungal taxon Host plant Specimen no Date of
collection
Geograpphic origin GenBank or
BOLD
accession no.(ITS)
C. ledi Ledum palustre DAOM 138900 1966-09-05 Bialowieza Forest,
Poland
CHITS056-08b
Picea abies DAOM 162213 1975-07-28 Pudasjärvi, Jonku,
Finland
CHITS059-08b
C. ledicola Ledum groenlandicum Only DNA extraction 2005-06-17 Waswanipi River,
Quebec, Canada
CHITS060-08b
Picea glauca QFB 25034 2007-08-04 Chisasibi, Quebec,
Canada
CHITS028-08b
C. monesis Moneses (= Pyrola)
uniflora
DAOM 221985 1957-06-03 Graham Island, British CHITS044-08b
Picea sitchensis DAVFP 10017 1956-09-01 Columbia, Canada CHITS107-09b
C. nagodhii Rhododendron
groenlandicum
Only DNA extraction 2007-06-21 Manicouagan, Quebec,
Canada
CHITS065-08b
Picea mariana QFB 25054 2007-07-25 Charlevoix, Quebec,
Canada
CHITS030-08b
C. neoglandulosi Ledum glandulosum DAOM 229530 1999-08-21 Okanagan, British
Columbia,
Canada
CHITS042-08b
C. piperiana Ledum macrophyllumc DAFVP 14998 1963-06-06 Hope, British Columbia,
Canada
CHITS113-09b
C. pyrolae Picea glauca QFB 25055 2006 Lac St-Jean, Quebec,
Canada
CHITS013-08b
Pyrola sp. QFB 25056 2008-05-31 Bic, Quebec, Canada CHITS066-08b
C. rhododendri Picea abies WM 1183 1999-08-22 Obere Chlusi, Bernese CHITS009-08b
Oberland, Switzerland
Rhododendron
ferrugineum
QFB 19829 1972-07-12 Simplon, Valais,
Switzerland
CHITS036-08b
Ledum lapponicum DAFVP 14606 1962-08-10 Summit Pass, British CHITS105-09b
Columbia, Canada
Ledum lapponicum DAFVP 14607 1962-07-27 Summit Pass, British CHITS106-09b
Columbia, Canada
C. vaccinii Vaccinium parvifolium DAOM 45774 1952-07-08 Graham Island, British CHITS070-08b
Columbia, Canada
Vaccinium parvifolium DAVFP 18160 1968-05-18 Victoria Island, British CHITS115-09b
Columbia, Canada
C. woroninii Ledum groenlandicum QFB 25009 2006-06-26 Charlevoix, Quebec,
Canada
CHITS006-08b
Picea abies DAOM 230441 1996-07-16 Sodankylä, Ruosselkä,
Finland
CHITS072-08b
Coleosporium
campanulae
Campanula sp. HMBF-41501 China KP017555a
Coleosporium
phellodendri
Phellodendron amurense HMBF-12 China KP017556a
Coleosporium
phellodendri
Phellodendron chinense BJFC-R00700 2006-07-14 Shaanxi,China KX225406a
Melampsora
epitea
Salix bebbiana SB2002-3 Minnesota,USA AY471646ab
BJFC: Museum of Beijing Forestry University, Beijing, China; DAFVP: Forest Pathology Herbarium, Canadian Forest Service, Pacific
Forestry Centre,Victoria, British Columbia, Canada; DAOM: Agriculture and Agri-Food Canada, Ottawa, Ontario, Canada; HMAS:
Herbarium Mycologicum Academiae Sinicae, Beijing, China; QFB: Rene Pomerleau Herbarium, Canadian Forest Service, Laurentian
Forestry Centre, Quebec, Canada.
astands for sequences used in the current study in GenBank; bstands for sequences from BOLD; abstands for sequences used as outgroup.
* stands for specimens used in this study.
—stands for no information available.
CAO ET AL.
58 Phytotaxa 309 (1) © 2017 Magnolia Press
Results
Morphology
The telia of the rust fungus on R. oreodoxa were abundant, pulvinate without stalk cells, and had a waxy or gelatinous
appearance. Teliospores were covered by gelatineous sheaths (Figs 2B, 2C), which is the key characteristics for
identification of the genus Diaphanopellis. The uredinia were surrounded by a conspicuous peridium with square and
ornamented cells, the outter surface of peridium was deeply convave and smooth, while the inner surface was densely
warted.
This taxon clearly differs from D. forrestii (Crane 2005) in its urediniospore surface structure and smaller-size
teliospores. Moreover, the morphology of uredinia peridium is different in these two species. Detailed morphological
comparisons of specimens of the two species, including measurements in the uredinial and telial stages, are presented
in Table 2.
TABLE 2. Comparison of morphological characteristics of Diaphanopellis forrestii and Diaphanopellis purpurea.
Diaphanopellis forrestii Diaphanopellis purpurea
Spermogonial
stage
Unknown Unknown
Aecial stage Unknown Aecia amphigenous, ligulate. Aeciospores ellipsoidal,
oblong,globose,
or subglobose; 16–28× 11–24 m, densely echinulate,
a small numbers of central spines arise frequently;
Peridium outer surface deeply convex, striate or rugulose;
Peridium inner surface flat and smooth
Uredinial stage Urediniosporaes size: 19–35×12–29 m Urediniosporaes size: 22–38×20–30 m
Urediniosporaes surface: densely warted, one side
covered
Urediniosporaes surface: densely warted;
by a shallowly warted, longitudinal cap with a ragged
edge;
one side covered by longitudinal cap,cap with bumps and
broken edge;
Warts crowded, annulate, cylindrical or irregular in shape Warts coronate,fingerlike,cylindrical or irregular in
shape;
with broad tops, interspersed with much smaller,
shallower warts
the heads are acutely and minutely dentate or tubercular.
Peridial cells outer wall surface deeply concave, smooth
or
Peridial cells outer wall surface deeply concave, with
sharply defined edges,
finely warted; smooth to slightly rough surface
Peridial cells inner wall surface densely warted; Peridial cells inner wall surface flat or slightly convex,
warts shallow,
sometimes appearing labyrinthine irregular, and discrete
Telial stage The telial stage occurs on R. selense Franch The telial stage occurs on R. oreodoxa Franch
Teliospores catenulate, covered by a hyaline, thin-walled
sheath
Teliospores catenulate, covered by a hyaline, thin-walled
sheath
Teliospores size:17–33× 6–20 m Teliospores size:10–28× 5–12 m
TABLE 3. Sequence data of related rust genus analyzed in this study or obtained from GenBank and BOLD. (new species
in bold).
Fungal taxon Host plant Specimen no Date of
collection
Geograpphic origin GenBank accession
no. ITS
Diaphanopellis
purpurea
Picea purpurea BJFC-R02299* 2014-07-21 Sichuan,China KX225401
Picea purpurea BJFC-R02300* 2014-07-21 Sichuan,China KX225402
Rhododendron oreodoxa HMAS-55188* 1987-05-01 Sichuan,China KX225403
Rhododendron oreodoxa BJFC-R01698* 2014-05-21 Sichuan,China KX225404
Rhododendron oreodoxa BJFC-R01699* 2014-05-21 Sichuan,China KX225405
Chrysomyxa
arctostaphyli
Picea mariana DAOM 229628 1986-06-30 Klondike Loop,
Yukon,Canada
GU049458b
Arctostaphylos uva-ursi DAOM 183586 1982-06-16 Kenora district,
Ontario,Canada
GU049459b
...continued on the next page
A NEW RUST SPECIES OF DIAPHANOPELLIS Phytotaxa 309 (1) © 2017 Magnolia Press 59
TABLE 3. (Continued)
Fungal taxon Host plant Specimen no Date of
collection
Geograpphic origin GenBank accession
no. ITS
Chrysomyxa
woroninii
Ledum groenlandicum QFB 25009 2006-06-26 Charlevoix, Quebec,
Canada
GU049495b
Picea abies DAOM 230441 1996-07-16 Sodankylä, Ruosselkä,
Finland
GU049494b
Coleosporium
phellodendri
Phellodendron amurense BJFC-QL12 — KP017556b
Phellodendron chinense BJFC-R00700 2006-07-14 Shaanxi,China KX225406b
Coleosporium
campanulae
Campanula sp. HMAS-41501 — China KP017555b
BJFC-ZL001 — China JQ219672b
Melampsora epitea Salix sp. BPI-US0022745 1950 Abisko,Sweden AY471648b
Salix arctica BPI-FC2002-8 Fort Conger, Ellesmere
Island, Nunavut
AY471634b
Canada
Melampsora
populnea
2006-09-23 France EU808037b
2006-09-23 France EU808036b
Pucciniastrum tiliae Tilia japonica IBA7878 — Aomori,Japan AB221454b
Tilia japonica IBA7670 — Miyazaki,Japan AB221453b
Pucciniastrum
boehmeriae
Boehmeria tricuspis TSH-R21290 — Aomori,Japan AB221449 b
Boehmeria tricuspis TSH-R21289 — Aomori,Japan AB221450b
Melampsoridium
betulinum
Birch sp. — — EU391657b
— — JN581986b
Melampsoridium
hiratsukanum
Alnus incana (alder) Trentino region,Italy KC888944b
Alnus rhombifolia PDR1480181 2010-08-08 Santa Cruz County,
California,USA
KC313889b
Thekopsora ostryae Ostrya japonica BJFC -GS-78 2012-08-09 Gansu,China KC415787b
Ostrya japonica BJFC -GS-129 2012-08-11 Gansu,China KC415796b
Thekopsora areolata Picea abies Buskerud, Ovre Eiker,
Hokksund,Norway
EF363336b
Picea abies Ostfold, Eidsberg,
Ramstad,Norway
DQ087230b
Cronartium ribicola Ribes odoratum — USA KF387533b
2010-06-01 USA JN587805b
Cronartium
flaccidum
Vincetoxicum nigrum — France JN802139b
Melampyrum nemorosum — — AY566270b
Puccinia
melampodii
Parthenium hysterophorus — — EU659697ab
BJFC: Museum of Beijing Forestry University, Beijing, China; BPI: U.S. National Fungal Herbarium; DAOM: Agriculture and Agri-
Food Canada, Ottawa, Ontario, Canada; HMAS: Herbarium Mycologicum Academiae Sinicae, Beijing, China; QFB: Rene Pomerleau
Herbarium, Canadian Forest Service, Laurentian Forestry Centre, Quebec, Canada; TSH: Mycological Herbarium of the Graduate School
of Life and Environmental Sciences, University of Tsukuba, Japan.
bstands for sequences from GenBank.
abstands for sequences used as outgroup.
* stands for specimens used in this study.
—stands for the information is not found.
Molecular phylogeny
The final alignment consisted of 36 ingroup taxa contained 666 total characters, with 398 constant characters and 93
parsimony-uninformative variable characters. MP analysis yielded a single parsimonious tree (TL = 430, CI = 0.798,
RI = 0.887, and RC = 0.707), resulting in 18 terminal clades (Fig. 3). Bayesian analysis generated a tree of the same
topology. The ITS tree indicated that the rust fungus on P. purpurea and R. oreodoxa formed a monophyletic group in
Coleosporiaceae with strong bootstrap support (100) and Bayesian probabilties (1.00) (Fig. 3). They were also distinct
CAO ET AL.
60 Phytotaxa 309 (1) © 2017 Magnolia Press
from other known Chrysomyxa species. Moreover, the current rust fungus was phylogenetically distinct from other
Coleosporium species, which also belong to the family of Coleosporiaceae.
The ITS dataset (Fig. 4) of 9 rust genera yielded a highly resolved phylogenetic framework. The data matrix
contained 35 fungal specimens. Of 719 total characters, 332 characters were constant and 37 were parsimony-
uninformative variable characters. MP analysis of sequence data yielded a single parsimonious tree (TL = 845, CI
= 0.611, RI = 0.882, and RC = 0.307). Bayesian analysis resulted in one of identical topology. The topology of the
ITS phylogram indicated that the present rust fungus on P. purpurea and R. oreodoxa formed a sister relationship to
Chrysomyxa species, and they clustered as a distinct clade from Chrysomyxa species and Coleosporium species, all of
which belong to the family of Coleosporiaceae. The present rust fungus represents a new genus because it is different
from Chrysomyxa, Coleosporium and Melampsora.
Life cycle
Sequence data of the rust fungus on P. purpurea and that on R. oreodoxa were identical, and they formed a monophyletic
group with strong bootstrap support and Bayesian probabilities (Fig. 3). This suggested that the fungus on P. purpurea
is the aecial state of the new species Diaphanopellis purpurea. The aecial stage of D. forrestii was not discovered
(Crane 2005). Molecular comparisons and inoculations to obtain its aecial states would facilitate further investigations
of the two species.
Diaphanopellis purpurea produced amphigenous and ligulate, single or confluent aecia on needles of P. purpurea.
Aeciospores were variable in shape from globose to ellipsoidal or oblong, densely echinulate, a small numbers of
central spines arose frequently on a separated flat columnar verruca. Aecial peridium cells were rectangle, larger
than the spores, outer surface was deeply convex, striate or rugulose, while inner surface was flat and smooth. The
aeciospore wall ornamentation of this new species is unique and different from all other described Chrysomyxa species
on Picea, and distinct from other rust fungi with verruose or annulate aeciospores. The connection of the aecial and
telial stages of new species D. purpurea was established by phylogenetic analysis of ITS data.
Taxonomy
Diaphanopellis purpurea C. J. You & J. Cao, sp. nov. (Figs. 1, 2)
MycoBank :—MB819572
Etymology:—Epithet “purpurea refers to the aecial host of the holotype.
Diagnosis:—Differs from morphologically similar species, Diaphanopellis forrestii in the surface structure of uredinospore and uredium
peridium. In addition, it differs from other known Chrysomyxa species because of teliospore morphology.
Typ e:—CHINA, Sichuan Province: Kangding County, 29°5936N 101°5346E, alt. 3181 m, I on Picea purpurea Mast. (Pinaceae), 21
July 2014, C. J. You (Holotype, BJFC-R02299); CHINA, Sichuan Province: Kangding County, 29°5936N 101°5346E, alt. 3181
m, I on Picea purpurea: 21 July 2014, C. J. You (Isotype: BJFC-R02300).
Other Specimens examined:—CHINA, Sichuan Province: Kangding County, 22°5924N 101°5239E, alt. 3227 m,
II, III on Rhododendron oreodoxa Franch., 21 May 2014, Y. Bai (BJFC-R01698); Yunnan Province: the National
Forest Park of Shangari-La, 29°4535N 99°5941E, alt. 3565 m, I on Picea purpurea: 15 July 2014, C.J. You (BJFC-
R02301; BJFC-R02302): CHINA, Sichuan Province, Kangding County, 29°5921N 101°5240E, alt. 3263 m, 21
May 2014, Y. Bai (BJFC-R01699); Sichuan Province, Kangding County, May 1987, Y. L. Guo (HMAS-55188).
Spermogonia unknown.
Aecia amphigenous, ligulate, 0.3–1.1 mm wide. Aeciospores ellipsoidal, oblong, globose, or subglobose, 16–28 ×
11–24 m, with yellow inclusion, densely echinulate, a small numbers of central spines arise frequently on a separated
flat columnar verruca; wall hyaline, 0.4–0.6 m thick, wall plus spines 1.2–3.4 m thick; Aecial peridium dehiscing
at apex, later shredding, leaving a fringe around sorus; Peridial cells rectangle, larger than the spores, outer surface
deeply convex, striate or rugulose, inner surface flat, wall smooth. Uredinia subepidermal, erumpent, Aecidium-type,
covered by a conspicuous peridium; Peridial cells polygonal, round or square, similar in size or larger than the spores;
Outer peridium surface cells deeply concave, with sharply defined edges, smooth to slightly rough surface; inner
surface flat or slightly convex, warts shallow, irregular, and discrete. Urediniospores catenulate, globose, subglobose
to polygonal or ovoid, occasionally ellipsoidal, 22–38 × 20–30 m, densely warted, warts coronate, fingerlike, flame-
shaped or irregular in shape, the heads are acutely and minutely dentate or tubercular; wall 1.3–1.6 m thick, wall
A NEW RUST SPECIES OF DIAPHANOPELLIS Phytotaxa 309 (1) © 2017 Magnolia Press 61
plus warts 2.1–3.4 m. Telia in large groups, gelatinous, orange or aurantiaca, erumpent; from round to elongated or
irregular, 130–300 × 100–280 m, often sunken in the center; raised, slightly constricted at the base, without stalk
cells. Teliospores catenulate, 10–28 × 5–12 m, thin-walled, finely tuberculate, enclosed in a loose hyaline sheath with
a thin wall, not laterally adherent.
FIGURE 1. Diaphanopellis purpurea on Picea purpurea (BJFC-R02299). A. Oblong-ellipsoid aeciospores (LM); B. Aecial peridium
with smooth inner surface; C. aeciospores; D. Aecial peridium with deeply convex, striate or rugulose outer surface; E. Densely echinulate
on aeciospores surface. Scale bars: A, C, D, E = 10m; B = 20 m.
Discussion
Diaphanopellis purpurea on R. oreodoxa has all the characteristics of Diaphanopellis, its teliospores are covered
by transparent sheaths (Figs 2B, 2C) and its telia morphology is similar to Diaphanopellis forrestii. It is distinctly
different from Chrysomyxa - the common pathogen infecting Rhododendron, which produces teliospores covered by
hyaline sheath and uredinial anamorph in Aecidium rather than Caeoma (Crane 2005).
Diaphanopellis forrestii on R. selense was described by Crane (2005) and it was characterized by catenulate,
densely warted urediniospores, one side covered by a narrowly warted, longtitudinal cap with a ragged edge. The
peridial cells of uredinia were larger than the urediniospores, outter surface deeply convave, smooth, or slightly warted,
inner surface densely warted, sometimes labyrinthine, side walls striate (Crane 2005). The type specimen of D. forrestii
was unavailable, but detailed morphological examinations of the 2 paratype specimens (HMAS 46927, HMAS 46933)
were provided, and the morphological characteristics fitted well with the original description by Crane (2005). We
were unable to obtain the ITS sequences of the species since these specimens were too old for DNA extraction.
CAO ET AL.
62 Phytotaxa 309 (1) © 2017 Magnolia Press
FIGURE 2. Diaphanopellis purpurea on Rhododendron oreodoxa (BJFC-R01698). A. Telia in large groups, gelatinous, orange, erumpent;
B. Showing transparent sheaths extending beyond teliospores; C. Cross section of telium, showing transparent sheaths around teliospores;
D. Globose to subglobose urediniospores; E. Urediniospores; F. Urediniospores showing warts coronate, fingerlike, or irregular in shape;
G. Concave outer surface of peridial cells ; H. Warted inner surface of peridial cells. Scale bars: A = 200 m; B = 50 m; C, D, E, G = 10
m; F = 0.5 m; H = 20 m.
The new species D. purpurea is clearly distinct from D. forrestii by its unique urediospore-surface structure,
which is frequently used as important criterion for species identification, and by its smaller teliospores (Figs 2B, 2C).
The urediniospores (Figs 2D, 2E, 2F) are densely verrucose, crowded cylindrical, flame-shaped warts, lacking narrow
and irregular cap on spore surface, and the inner surface of peridial cells (Figs 2G, 2H) are discrete, shallow and
irregular warts, which are different from the densely warted inner surface of D. forrestii. In addition, the teliospore
size (10–28 × 5–12m) of D. purpurea is smaller than that of D. forrestii (17–33 × 6–20m; Crane 2005). The detailed
morphological differences between the two Diaphanopellis species are listed in Table 2. Although the sequence data of
D. forrestii is currently unavailable, the clearly distinct morphological characteristics between the two species suggest
that D. purpurea is a new species. As Crane (2005) mentioned, these unique features of Diaphanopellis including
peridium of uredinia and the gelatinous layer over the telium may be adaptations to avoid desiccation at high altitudes
and climate changes.
Diaphanopellis purpurea differs from other known Chrysomyxa species in its aeciospores surface ornamentation
and aecial peridium. The new species is characterized by its echinulate processes on aeciospores surface, while most
Chrysomyxa species produce aeciospores with annulate warts on spore surface. The densely echinulate aeciospores
with a small numbers of central spines arising frequently on a separated flat columnar verruca (Figs 1C, 1E) closely
resemble the ornamentation on urediniospores of Coleosporium phellodendri Kom. on Phellodendron (Kaneko 1981).
However, in phylogenetic analyses (Fig. 3) the new species on P. purpurea grouped in a distinct clade from two
Coleosporium species and other Chrysomyxa species.
A NEW RUST SPECIES OF DIAPHANOPELLIS Phytotaxa 309 (1) © 2017 Magnolia Press 63
FIGURE 3. Phylogenetic tree constructed by maximum parsimony and Bayesian analyses based on ITS sequences of rust species of
Coleosporiaceae. Bootstrap values were calculated from 1,000 replications. Parsimony bootstrap (before the slash marks) and Bayesian
posterior probabilities (after the slash marks) greater than 50% are shown. Bars: 10 nucleotide substitutions. New species are shown in
bold.
In the rDNA ITS phylogeny (Fig. 3), the present rust fungus on P. purpurea and R. oreodoxa was phylogenetically
distinct from the other Chrysomyxa species considered in this study. The new species was phylogenetically distinct
from morphologically similar species, i.e., Chrysomyxa cassandrae Tranzschel. and Chrysomyxa rhododendri de Bary.
Moreover, it was nested in all Chrysomyxa group in the rDNA ITS phylogeny, however, at genus rank phylogenetic
work based on molecular data found the present rust fungus to be a new rust genus, different from Chrysomyxa (Fig.
4).
CAO ET AL.
64 Phytotaxa 309 (1) © 2017 Magnolia Press
FIGURE 4. Phylogenetic tree constructed by maximum parsimony and Bayesian analyses based on ITS sequences of related rust genera.
Bootstrap values were calculated from 1,000 replications. Parsimony bootstrap (before the slash marks) and Bayesian posterior probabilities
(after the slash marks) greater than 50% are shown. Bars: 10 nucleotide substitutions. New species are shown in bold.
The monophyletic status of Chrysomyxa was supported by using 28S sequence data from the two closely related
Chysomyxa species (C. ledi and C. rhododendri) (Maier et al. 2003). However when integrated into a larger phylogenetic
framework based on ITS and 28S phylogenetic signals, Chysomyxa was proved to be polyphyletic. Chysomyxa species
were distributed in three distinct clades, moreover, some close relationships between C. pyrolae, C. monesis and the
Coleosporium genus and between C. weirii and the Melampsora genus were demonstrated (Feau et al. 2010).The
new species D. purpurea is nested in Chrysomyxa group, with a weakly supported sister group relationship with the
genus Chrysomyxa, it indicates that Diaphanopellis is polyphyletic, while the two genus are defined by clearly distinct
morphological characteristics. Further taxonomic investigation and multigene phylogenies are required to identify
evolutionary patterns that drive speciation within the genus Chrysomyxa and Diaphanopellis.
Acknowledgements
This work was supported by National Natural Science Foundation of China (No. 31300540), and The Fundamental
Research Funds for the Central Universities, China (No. BLX2012032) and. We would like to thank the Herbarium
Mycologicum Academiae Sinicae, Beijing, China (HMAS), for providing herbarium materials in this study.
A NEW RUST SPECIES OF DIAPHANOPELLIS Phytotaxa 309 (1) © 2017 Magnolia Press 65
References
Balfour-Browne, F.L. (1955) Some Himalayan fungi. Bulletin of the British Museum (Natural History), Botany (7): 187–218.
Barclay, A. (1891) Rhododendron Uredineae. Sci Mem Med Officers Army India 6: 71–74.
Berndt, R. (1999) Chrysomyxa rust: morphology and ultrastructure of D-haustoria, uredinia, and telia. Canadian Journal of Botany 77:
1469–1484.
http://dx.doi.org/10.1139/b99-113
Crane, P.E. (2001) Morphology, taxonomy and nomenclature of the Chrysomyxa ledi complex and related rust fungi on spruce and
Ericaceae in North America and Europe. Canadian Journal of Botany 79: 957–982.
https://doi.org/10.1139/b01-071
Crane, P.E. (2005) Rust fungi on rhododendrons in Asia: Diaphanopellis forrestii gen. et sp. nov., new species of Caeoma, and expanded
descriptions of Chrysomyxa dietelii and C. succinea. Mycologia 97 (2): 534–548.
http://doi.org/10.3852/mycologia.97.2.534
Cummins, G.B. & Hiratsuka, Y. (2003) Illustrated genera of rust fungi, 3rd edn. The American Phytopathological Society Press, St.
Paul.
Feau, N., Vialle, A., Allaire, M., Maier, W. & Hamelin, R.C. (2011) DNA barcoding in the rust genus Chrysomyxa and its implications for
the phylogeny of the genus. Mycologia 103 (6): 1250–1266.
https://doi.org/10.3852/10-426
Felsenstein, J. (1985) Phylogenies and the comparative method. The American Naturalist 125 (1): 1–15.
https://doi.org/10.1086/284325
Gardes, M. & Bruns, T.D. (1993) ITS primers with enhanced specificity for basidiomycetes: application to the identification of mycorrhizae
and rusts. Molecular Ecology 2: 113–118.
https://doi.org/10.1111/j.1365-294X.1993.tb00005.x
Kaneko, S. (1981) The species of Coleosporium, the causes of pine needle rusts in the Japanese Archipelago. Reports of the Tottori
Mycological Institute 19: 1–159.
Katoh, K. & Standley, D.M. (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability.
Molecular Biology and Evolution 30: 772–780.
https://doi.org/10.1093/molbev/mst010
Kirk, P.M., Cannon, P.F., Minter, D.W. & Stalpers, J.A. (2008) Dictionary of the Fungi. 10th ed. CABI, Wallingford, UK.
Maier, W., Begerow, D., Weiß, M. & Oberwinkler, F. (2003) Phylogeny of the rust fungi: an approach using nuclear large subunit
ribosomal DNA sequences. Canadian Journal of Botany 81: 12–23.
https://doi.org/10.1139/b02-113
Posada, D. & Crandall, K.A. (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817–818.
https://doi.org/10.1093/bioinformatics/14.9.817
Ronquist, F. & Huelsenbeck, J.P. (2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–
1574.
https://doi.org/10.1093/bioinformatics/btg180
Swofford, D.L. (2002) PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4.0b10. Sinauer, Sunderland, MA.
Thomson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. & Higgins, D.G. (1997) The ClustalX windows interface: flexible strategies for
multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25: 4876–4882.
https://doi.org/10.1093/nar/25.24.4876
Tian, C.M., Shang, Y.Z., Zhuang, J.Y., Wang, Q. & Kakishima, M. (2004) Morphological and molecular phylogenetic analysis of
Melampsora species on poplars in China. Mycoscience 45: 56–66.
https://doi.org/10.1007/S10267-003-0150-Z
White, T.J., Bruns, T., Lee, S. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics.
In: Innis, M.A., Gelfand, D.H., Snisky, J.J. & White, T.J. (Eds.) PCR protocols: a guide to methods and applications. San Diego,
USA, pp. 315–322.
https://doi.org/10.1016/b978-0-12-372180-8.50042-1
... Rust fungi of the genus Chrysomyxa Unger (Coleosporiaceae, Pucciniales) are widespread in the Northern hemisphere, causing spruce needle and cone rust diseases, which are responsible for significant economic losses, especially in spruce plantations and natural forests in northwest and southwest China [12][13][14][15][16]. Most Chrysomyxa species are heteroecious, macrocyclic and they produce the spermogonia and aecia on Pinaceae, while also the uredinia and telia on Ericaceae and Pyrolaceae, mostly on Rhododendron [2,4,12,15,16]. ...
... Morphological characters of studied specimens were compared to the type specimens and original descriptions [4,[12][13][14][15][16][29][30][31]. For each specimen, approximately 50-60 spores were mounted in a drop of lactophenol or lactophenol cotton blue solution on a microscopic slide and randomly measured. ...
... Despite these differences, species number estimations estimated by ABGD were closer to the number of species morphologically identified, and the number of lineages found by bPTP and mPTP was lower than those identified by morphology. Nevertheless, 12 putative species were recognized by all four of the methods, and these are supported by morphological diagnosis in previous taxonomic studies [13][14][15][16]. According to all species delimitation analyses, C. rhododendri from North America, Europe, and China were separated as three hypothetical species in GMYC and ABGD, and C. ledi from North America (CHITS056-08, CHITS059-08) and China (BJFC-R02705, BJFC-R02705-2) were divided into two candidate species in ABGD and GMYC. ...
Article
Full-text available
Chrysomyxa rusts are fungal pathogens widely distributed in the Northern hemisphere, causing spruce needle and cone rust diseases, and they are responsible for significant economic losses in China. Taxonomic delimitation and precise species identification are difficult within this genus because some characters often overlap in several species. Adequate species delimitation, enhanced by the use of DNA-based methodologies, will help to establish well-supported species boundaries and enable the identification of cryptic species. Here, we explore the cryptic species diversity in the rust genus Chrysomyxa from China. Species delimitation analyses are conducted using a distance-based method (ABGD) and three tree-based methods (GMYC, bPTP, and mPTP) based on combined LSU and ITS sequences of over 60 specimens. Although there is some incongruence among species delimitation methods, two new species and three putative cryptic species are identified. The key to 20 Chrysomyxa species distributed in China is presented. These results suggest that a significant level of undiscovered cryptic diversity is likely to be found in Chrysomyxa from China. Future studies should consider multiple analytical methods when dealing with multi-locus datasets.
... Morphologically, it differs from all Chrysomyxa species in producing aseptate teliospores with a discoid head on minute basal stalks (Fig. 12;Zhuang and Zheng 2017;You et al. 2019;Ji et al. 2020 Notes: Our molecular data revealed that Diaphanopellis purpurea on Rhododendron oreodoxa was phylogenetically close to Chrysomyxa diebuensis and C. zhuoniensis (Fig. 3). This species was first described as a member of Diaphanopellis because of its teliospores enclosed in transparent sheaths, however, rDNA phylogeny showed that it was phylogenetically allied to C. arctostaphyli and C. woroninii (Cao et al. 2017 ...
... Phylogenetic relationships of the order Pucciniales based on rDNA SSU-ITS-LSU sequence data ( adopted from Zhao et al. 2020). Family names were marked at each clade followed by generic names in the bracket agreed with that of Cao et al. (2017) and revealed its affinity to Chrysomyxa rather than Diaphanopellis (Fig. 3). We thus transfer Diaphanopellis purpurea into Chrysomyxa. ...
... DNA-based methods promote precise species identification for rusts, but obtaining good quality sequences from rusts is still challenging because they are unculturable on artificial media. Until recently, morphological and molecular data were gradually combined and utilized to clarify the diversity of species in several rust genera in China, i.e., Chrysomyxa (You et al. 2019), Cronartium (Qi et al. 2018), Gymnosporangium (Cao et al. 2017;Zhao et al. 2020), Melampsora (Tian et al. 2004;Zhao et al. 2017a, b), Phragmidium (Liu et al. 2019), Pucciniastrum (Ji et al. 2019), Thekopsora (Yang 2015). Our attempt to explore the diversity of rust fungi in China recognized 377 rust species. ...
Article
Full-text available
Rust fungi taxonomically belonging to Pucciniales (Basidiomycota) are important phytopathogens that cause many significant diseases to agricultural crops and forest trees. Hitherto, ca. 8000 and 1200 species have been reported from worldwide and China, respectively. To investigate and document the diversity of rust fungi in China, we have sampled from 86 natural reserves and national parks in the past several years, and 6627 specimens have been collected. Our identification using both morphological and molecular data assigned 1654 collections to 337 species in 43 genera of 15 families, as cataloged in this paper. Among them, 34 new species are formally described based on their morphological distinctions and phylogenetic relationships. In addition, three new families Endoraeciaceae, Neophysopellaceae and Uromycladiaceae are proposed based on their morphological distinctions, phylogenetic independences and divergent times. Considering the traditionally morphologically defined families in Pucciniales have been increasing revealed to be discordant with phylogenetic groupings, taxonomic revisions are needed in future study to establish a natural classification system in Pucciniales. We also discussed the importance of morphologies in spermogonia and aecia for the delimitation of Puccinia and related genera. This study presents a significant contribution to the knowledge of rust flora in China. Taxonomic novelties: new families: Endoraeciaceae P. Zhao & L. Cai; Neophysopellaceae P. Zhao & L. Cai; Uromycladiaceae P. Zhao & L. Cai; new species: Chrysomyxa jinghongensis P. Zhao & L. Cai; Coleosporium sichuanense P. Zhao & L. Cai; Coleosporium smilacis P. Zhao & L. Cai; Cystopsora yunnanense P. Zhao & L. Cai; Gerwasia guanganensis P. Zhao & L. Cai; Gerwasia rubus-playfairianus P. Zhao & L. Cai; Hamaspora rubus-pirifolius P. Zhao & L. Cai; Macruropyxis guizhouensis P. Zhao & L. Cai; Macruropyxis paederiae P. Zhao & L. Cai; Melampsora hyperici-sampsonii P. Zhao & L. Cai; Melampsora linearis P. Zhao & L. Cai; Melampsora salicis-delavayanae P. Zhao & L. Cai; Neophysopella vitis-davidii P. Zhao & L. Cai; Phakopsora sophorae P. Zhao & L. Cai; Phragmidium nonapiculatum P. Zhao & L. Cai; Phragmidium kanas P. Zhao & L. Cai; Phragmidium duchesneae-indicae P. Zhao & L. Cai; Pileolaria medogensis P. Zhao & L. Cai; Puccinia amygdalus-iridis P. Zhao & L. Cai; Puccinia aphananthe-aspera P. Zhao & L. Cai; Puccinia microsorus P. Zhao & L. Cai; Puccinia nandina-domestica P. Zhao & L. Cai; Puccinia persicaria-odorata P. Zhao & L. Cai; Puccinia polygonum-aviculare P. Zhao & L. Cai; Puccinia pulverulentus P. Zhao & L. Cai; Puccinia saposhnikoviae P. Zhao & L. Cai; Puccinia sonchus-oleraceus P. Zhao & L. Cai; Puccinia thalictrum-finetii P. Zhao & L. Cai; Puccinia thalictrum-minus P. Zhao & L. Cai; Puccinia xingwenensis P. Zhao & L. Cai; Puccinia xinjiangensis P. Zhao & L. Cai; Puccinia zanthoxyli-chinensis P. Zhao & L. Cai; Uromyces aconiticola P. Zhao & L. Cai; Uromycladium yunnanense P. Zhao & L. Cai; new combinations: Chrysomyxa purpurea (C.J. You & J. Cao) P. Zhao & L. Cai; Neophysopella verannonae (Beenken) P. Zhao & L. Cai.
... Coleosporium phellodendri is present in Fujian (Zhuang, 1983), Heilongjiang, Jilin, Liaoning (Dossier Section 2.0; EPPO, online), Shaanxi (Cao et al., 2000;Cao et al., 2017) and Sichuan (Zhang et al., 1997). ...
Article
Full-text available
The European Commission requested the EFSA Panel on Plant Health to prepare and deliver a scientific opinion on the risk posed by bonsai plants from China consisting of Pinus parviflora grafted on Pinus thunbergii taking into account the available scientific information, including the technical information provided by China. All pests associated with P. parviflora and/or P. thunbergii were evaluated against specific criteria for their relevance for this Scientific Opinion. Forty-three pests that fulfilled all relevant criteria were selected for further evaluation. For 24 pests that are not quarantine in the EU, the risk mitigation measures described in the technical dossier from China were evaluated taking into account the possible limiting factors. For these pests, an expert judgement is given on the likelihood of pest freedom taking into consideration the risk mitigation measures acting on the pest, including uncertainties associated with the assessment. While the estimated degree of pest freedom varied among pests, Setoptus parviflorae was the pest most frequently expected on the commodity. The Expert Knowledge Elicitation indicated, with 95% certainty, that 9,114 or more bonsai plants per 10,000 will be free from Setoptus parviflorae. For 19 pests that are quarantine in the EU, the implementation of specific measures defined in point 30 and 31 of Annex VII of Commission Implementing Regulation (EU) 2019/2072 was evaluated. The requirements of point 31 are met, whereas those of point 30 are not completely fulfilled.
Article
Full-text available
The EFSA Plant Health Panel performed a pest categorisation of Coleosporium phellodendri Kom., a basidiomycete fungus belonging to the order Pucciniales, causing rust diseases on Pinus spp. (aecial host) and on Phellodendron spp. (telial host). C. phellodendri has been reported only from Asia (namely, China, Republic of Korea, Japan and Russia) and is not known to be present in the EU territory. The pathogen is not listed in Annex II of Commission Implementing Regulation (EU) 2019/2072, an implementing act of Regulation (EU) 2016/2031, or in any emergency plant health legislation. The pathogen could enter into, become established in, and spread within the EU territory via host plants for planting and host plant parts (e.g. foliage, branches) other than seeds and fruits, respectively. Spread within the EU territory may also occur by natural means if Phellodendron spp. were present. Availability of the Pinus spp. and climate suitability factors occurring in the EU are favourable for the establishment of the pathogen in areas where Phellodendron spp. are also present. Phytosanitary measures are available to prevent the introduction and spread of the pathogen in the EU. C. phellodendri does not satisfy all the criteria assessed by EFSA for consideration as a Union quarantine pest as no economic and environmental impact of this pathogen is expected without widespread presence of Phellodendron spp. in the EU.
Article
Full-text available
Rust fungi in the order Pucciniales represent one of the largest groups of phytopathogens, which occur on mosses, ferns to advanced monocots and dicots. Seven suborders and 18 families have been reported so far, however recent phylogenetic studies have revealed para- or polyphyly of several morphologically defined suborders and families, particularly in Melampsorineae. In this study, a comprehensive phylogenetic framework was constructed based on a molecular phylogeny inferred from rDNA sequences of 160 species belonging to 16 genera in Melampsorineae (i.e. Chrysomyxa, Cerospora, Coleopuccinia, Coleosporium, Cronartium, Hylospora, Melampsora, Melampsorella, Melampsoridium, Milesina, Naohidemyces, Pucciniastrum, Quasipucciniastrum, Rossmanomyces, Thekopsora, Uredinopsis). Our phylogenetic inference indicated that 13 genera are monophyletic with strong supports, while Pucciniastrum is apparently polyphyletic. A new genus, Nothopucciniastrum was therefore established and segregated from Pucciniastrum, with ten new combinations proposed. At the family level, this study further demonstrates the importance of applying morphologies of spore-producing structures (basidia, spermogonia, aecia, uredinia and telia) in higher rank taxonomy, while those traditionally applied spore morphologies (basidiospores, spermatia, aeciospores, urediniospores and teliospores) represent later diverged characters that are more suitable for the taxonomy at generic and species levels. Three new families, Hyalopsoraceae, Nothopucciniastraceae and Thekopsoraceae were proposed based on phylogenetic and morphological distinctions, towards a further revision of Pucciniales in line with the phylogenetic relationships.
Article
The Basidiomycota constitutes a major phylum of the kingdom Fungi and is second in species numbers to the Ascomycota. The present work provides an overview of all validly published, currently used basidiomycete genera to date in a single document. An outline of all genera of Basidiomycota is provided, which includes 1928 currently used genera names, with 1263 synonyms, which are distributed in 241 families, 68 orders, 18 classes and four subphyla. We provide brief notes for each accepted genus including information on classification, number of accepted species, type species, life mode, habitat, distribution, and sequence information. Furthermore, three phylogenetic analyses with combined LSU, SSU, 5.8s, rpb1, rpb2, and ef1 datasets for the subphyla Agaricomycotina, Pucciniomycotina and Ustilaginomycotina are conducted, respectively. Divergence time estimates are provided to the family level with 632 species from 62 orders, 168 families and 605 genera. Our study indicates that the divergence times of the subphyla in Basidiomycota are 406–430 Mya, classes are 211–383 Mya, and orders are 99–323 Mya, which are largely consistent with previous studies. In this study, all phylogenetically supported families were dated, with the families of Agaricomycotina diverging from 27–178 Mya, Pucciniomycotina from 85–222 Mya, and Ustilaginomycotina from 79–177 Mya. Divergence times as additional criterion in ranking provide additional evidence to resolve taxonomic problems in the Basidiomycota taxonomic system, and also provide a better understanding of their phylogeny and evolution.
Article
Many rust fungi that infect Rhododendron belong to the genus Chrysomyxa or the anamorph genus Caeoma. Their morphological resemblance suggests a close taxonomical relationship, however, their phylogenetic relatedness remains unknown. To reveal the phylogenetic affinity and clarify informative morphological characters, we analyzed the sequences of the internal transcribed spacer region of the nuclear ribosomal DNA of 56 isolates representing four species of Caeoma and their allied genus Chrysomyxa, which infect Rhododendron from China. The analysis revealed that Caeoma and Chrysomyxa cluster in the same clade and intermix, thus new combinations in Chrysomyxa have been provided for Caeoma that infect Rhododendron. We also provide expanded descriptions and illustrations of the aecia of Chrysomyxa yunnanensis and the uredinia of Chrysomyxa zhuoniensis for the first time. This study advances our understanding of evaluating some asexually typified generic names of rust fungi using molecular data to determine their correct placement.
Article
Full-text available
We report a major update of the MAFFT multiple sequence alignment program. This version has several new features, including options for adding unaligned sequences into an existing alignment, adjustment of direction in nucleotide alignment, constrained alignment and parallel processing, which were implemented after the previous major update. This report shows actual examples to explain how these features work, alone and in combination. Some examples incorrectly aligned by MAFFT are also shown to clarify its limitations. We discuss how to avoid misalignments, and our ongoing efforts to overcome such limitations.
Article
Many rust fungi (Uredinales) that infect rhododendrons are difficult to identify because of similar spore size and overall morphology. As part of a morphological study of rusts in the genus Chrysomyxa, herbarium specimens of Asian rhododendron rusts were examined by light and scanning electron microscopy. They were compared with similar taxa from Europe and North America. Revised and illustrated descriptions are provided for the uredinia and telia of Chrysomyxa dietelii and Chrysomyxa succinea; details of the conspicuous uredinial peridium of both species are described for the first time. A new genus and species, Diaphanopellis forrestii, is proposed to accommodate a rust fungus with uredinia covered by a peridium of ornamented cells (Aecidium-type) and teliospores enclosed in transparent outer sheaths. This species includes the previously described anamorphs Aecidium rhododendri and A. sino-rhododendri. Three new anamorphic species with unique urediniospore morphology also are described: Caeoma clemensii from Philippines, Caeoma spinulospora from Tibet, and Caeoma yunnanensis from Yunnan, China. For morphological and nomenclatural reasons Uredo rhododendri (‘rhododendronis’) is renamed as Caeoma dumeticola and Uredo rhododendri-capitati is transferred to Caeoma. A key to Asian rhododendron rusts that form uredinia is provided. In general morphological groups of rhododendron rusts correlate with the subgenera of Rhododendron on which they occur, suggesting coevolution of these parasites with their hosts.
Book
— We studied sequence variation in 16S rDNA in 204 individuals from 37 populations of the land snail Candidula unifasciata (Poiret 1801) across the core species range in France, Switzerland, and Germany. Phylogeographic, nested clade, and coalescence analyses were used to elucidate the species evolutionary history. The study revealed the presence of two major evolutionary lineages that evolved in separate refuges in southeast France as result of previous fragmentation during the Pleistocene. Applying a recent extension of the nested clade analysis (Templeton 2001), we inferred that range expansions along river valleys in independent corridors to the north led eventually to a secondary contact zone of the major clades around the Geneva Basin. There is evidence supporting the idea that the formation of the secondary contact zone and the colonization of Germany might be postglacial events. The phylogeographic history inferred for C. unifasciata differs from general biogeographic patterns of postglacial colonization previously identified for other taxa, and it might represent a common model for species with restricted dispersal.
Article
Rust fungi in the genus Chrysomyxa Unger occur in boreal forests of the northern hemisphere on Pinaceae (mostly Picea A. Dietr.), and most species alternate to angiosperm hosts in the Ericaceae. About 30 species are known worldwide. Although several species are economically important pathogens of spruce and rhododendrons, knowledge about species delineations, relationships among species on different continents, and life cycles is lacking. A group of species with similar spore size, including the Chrysomyxa ledi de Bary complex, was re-examined using field observations, inoculation experiments, and light and scanning electron microscopy. In addition to host specificity, characters found useful in species delineation were urediniospore and aeciospore size and shape, and ornamentation of spores and the aecial peridium. Detailed descriptions are given for eight Chrysomyxa species, including synonyms, types, distribution, relationship to other species, and disease impact. The members of the C. ledi complex are considered separate species: Chrysomyxa ledi on Ledum palustre, Chrysomyxa nagodhii sp.nov. on Ledum groenlandicum and Ledum decumbens, Chrysomyxa neoglandulosi sp.nov. on Ledum glandulosum, Chrysomyxa cassandrae on Chamaedaphne calyculata, Chrysomyxa rhododendri on Rhododendron spp., and Chrysomyxa vaccinii comb.nov. on Vaccinium parvifolium. Chrysomyxa chiogenis, with similar spore size, is included for comparison. A previously unrecognized small-spored species, Chrysomyxa reticulata sp.nov., is described on Ledum spp. and Rhododendron spp. Evidence is presented that C. reticulata spreads from native Ledum spp. in North America to cultivated rhododendrons. A new anamorphic species, Peridermium zilleri, likely belonging in Chrysomyxa, is described on Picea sitchensis from coastal British Columbia.
Article
An electron- and light-microscopic study revealed that D-haustoria of Chrysomyxa rhododendri (DC.) De Bary and Chrysomyxa pirolata Winter were pedicellate and had a more or less tuber-shaped haustorial body. The haustorial necks were wrapped by a fold of the extrahaustorial membrane (velopedunculate haustorial type). The aecioid uredinia of Chrysomyxa rhododendri and Chrysomyxa empetri (Pers.) Schröter were covered by a one-layered peridium of the pucciniastreous type. In Chrysomyxa pirolata, young uredinia were covered by one to three layers of sterile fungal cells. In all investigated species, urediniospore mother cells were formed blastically by proliferating basal cells. Subsequent cell divisions of the urediniospore mother cells led to the formation of urediniospores and intercalary cells. In Chrysomyxa rhododendri, the intercalary cells had a pronounced proximal thickening of the radial wall. In Chrysomyxa pirolata andChrysomyxa empetri, the wall was uniformly thickened. Telial morphology of Chrysomyxa rhododendri and Chrysomyxa pirolata was very similar. In Chrysomyxa rhododendri, the probasidia formed true chains without intercalary cells, and they are probably of thallic origin. During maturation they partly separated at their septa by dissolution of the primary wall of the septa between the probasidia. No sterile elements were present in the telia. The occurrence of velopedunculate D-haustoria and a uredinial peridium of the pucciniastreous type confirm the systematic position of Chrysomyxa close to pucciniastreous rusts, Cronartium, and Coleosporium within Melampsoraceae.
Article
Rust fungi in the genus Chrysomyxa Unger occur in boreal forests of the northern hemisphere on Pinaceae (mostly Picea A. Dietr.), and most species alternate to angiosperm hosts in the Ericaceae. About 30 species are known worldwide. Although several species are economically important pathogens of spruce and rhododendrons, knowledge about species delineations, relationships among species on different continents, and life cycles is lacking. A group of species with similar spore size, including the Chrysomyxa ledi de Bary complex, was re-examined using field observations, inoculation experiments, and light and scanning electron microscopy. In addition to host specificity, characters found useful in species delineation were urediniospore and aeciospore size and shape, and ornamentation of spores and the aecial peridium. Detailed descriptions are given for eight Chrysomyxa species, including synonyms, types, distribution, relationship to other species, and disease impact. The members of the C. ledi complex are considered separate species: Chrysomyxa ledi on Ledum palustre, Chrysomyxa nagodhii sp.nov. on Ledum groenlandicum and Ledum decumbens, Chrysomyxa neoglandulosi sp.nov. on Ledum glandulosum, Chrysomyxa cassandrae on Chamaedaphne calyculata, Chrysomyxa rhododendri on Rhododendron spp., and Chrysomyxa vaccinii comb.nov. on Vaccinium parvifolium. Chrysomyxa chiogenis, with similar spore size, is included for comparison. A previously unrecognized small-spored species, Chrysomyxa reticulata sp.nov., is described on Ledum spp. and Rhododendron spp. Evidence is presented that C. reticulata spreads from native Ledum spp. in North America to cultivated rhododendrons. A new anamorphic species, Peridermium zilleri, likely belonging in Chrysomyxa, is described on Picea sitchensis from coastal British Columbia.Key words: Uredinales, Rhododendron, needle rust, Ledum, systematics.
Article
We have designed two taxon-selective primers for the internal transcribed spacer (ITS) region in the nuclear ribosomal repeat unit. These primers, ITS1-F and ITS4-B, were intended to be specific to fungi and basidiomycetes, respectively. We have tested the specificity of these primers against 13 species of ascomycetes, 14 of basidiomycetes, and 15 of plants. Our results showed that ITS4-B, when paired with either a ‘universal’ primer ITS1 or the fungal-specific primer ITS1-F, efficiently amplified DNA from all basidiomycetes and discriminated against ascomycete DNAs. The results with plants were not as clearcut. The ITS1-F/ITS4-B primer pair produced a small amount of PCR product for certain plant species, but the quantity was in most cases less than that produced by the ‘universal’ ITS primers. However, under conditions where both plant and fungal DNAs were present, the fungal DNA was amplified to the apparent exclusion of plant DNA. ITS1-F/ITS4-B preferential amplification was shown to be particularly useful for detection and analysis of the basidiomycete component in ectomycorrhizae and in rust-infected tissues. These primers can be used to study the structure of ectomycorrhizal communities or the distribution of rusts on alternate hosts.
Article
Many species of Melampsora on Populus have been reported in China, based on morphological characteristics of both uredial and telial states, and on host species, but their morphology and taxonomy are still poorly defined. In this study, 196 specimens representing Melampsora species on poplars and collected from various areas of China were used for morphological observations. The morphological characteristics of urediniospores and teliospores were examined with light and scanning electron microscopy. The specimens could be classified into five groups based on their morphology. For the sequencing of the nuclear large subunit rDNA (D1/D2), 5.8S rDNA and their internal transcribed spacers, ITS1 and ITS2 region, 54 specimens were selected from the specimens used in morphological observations. These specimens were separated into six clades by phylogenetic analyses of the D1/D2 and ITS regions. Correlations among morphological groups and phylogenetic clades based on these results suggest a revision of these species. In particular, no evidence to discriminate specimens of M. acedioides, M. magnusiana, and M. rostrupii was found from either morphological characteristics or sequence analysis.