This paper proposes a control method of the magnetorheological (MR) damper semi-active suspension controlling system with an L1 adaptive controller. The suspension system can be represented as a non-homogeneous system. Therefore, the proposed controller design method is introduced for avoiding the solving process of the convolution of a transfer matrix in the non-homogeneous system and guaranteeing the performance of the system within an acceptable level. The result, which is simulated by MATLAB/SIMULINK, proves that the proposed control architecture can work well for reducing calculation process. Moreover, this method is compared with the auto-tuned PID function in SIMULINK; as a result, the method shows a better overall performance by adjusting a few parameters.