Article

Spatio-Temporal Distribution of the Cryptic Flies of the Drosophila willistoni (Diptera: Drosophilidae) Subgroup in a Neotropical Forest

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Abstract

Identifying cryptic species is a challenging but critical task for conservation biology because such identifications improve the resolution of taxonomic inventories and increase our ability to precisely assess the biodiversity of environments as well as the conservation status of rare species. To understand the temporal and spatial distribution of the cryptic species contained in the Drosophila willistoni subgroup, we re-examined all of the individuals of this subgroup identified in a previous work that analyzed drosophilids associated with a forest patch in the Brazilian Cerrado from December 2007 to November 2008. Each collection consisted of banana-baited traps distributed in three vertical strata of the forest (0-, 4-, and 8-m heights) at three horizontal positions (edge, transition between edge and river, and river area). Our results revealed that the specimens originally identified as D. willistoni consisted of three cryptic species: D. willistoni (n=1,344), D. paulistorum (n=1,001), and D. tropicalis (one male). Most D. willistoni and D. paulistorum specimens were collected during the rainy season on the ground of the edge forest patch. However, D. paulistorum was more temporally and spatially restricted than D. willistoni. Our findings confirm that these three cryptic species of the subgroup D. willistoni differ not only in abundance but also in ecological tolerance. This study contributes to the improved understanding of the Brazilian savanna communities, whose high levels of species richness and endemism are well documented for plants but poorly known for insects.

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... The drosophilid communities in the Brazilian Savanna have been studied since 1998 and support the name of the genus: "Drosophila" means "dew-loving". During the rainy summer, drosophilid populations typically expand through all vegetation types, whereas during the dry winter, they shrink and concentrate in the mild forest patches (Tidon 2006;Mata and Tidon 2013;Mata et al. 2015b;Roque et al. 2017). In this scenario, elongated wings would be adaptative for dispersing during the warm rainy season in the Brazilian Savanna. ...
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The genetic polymorphism, as manifested in heterozygosis for chromosomal inversions, has been studied in populations of Drosophila willistoni from the West Indies and Central America, and compared with the situation in South American populations. The genetic variability is depauperate in island and marginal populations compared to continental and central ones. The reduction of the genetic variability is especially pronounced on the Lesser Antilles, except for Trinidad which has a population not very different from some continental ones. The island of St. Kitts has the most nearly monomorphic population known in the species D. willistoni. The populations of the different islands differ from each other rather more strikingly than do continental populations living at comparable distances. Larger islands tend to have more polymorphism than smaller islands. This agrees with the more general rule, that the amount of adaptive polymorphism in a population tends to be proportional to the diversity of environmental opportunities which this population exploits.
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Molecular sequences now overwhelm morphology in phylogenetic inference. Nonetheless, most molecular studies are conducted on a limited number of taxa, as DNA rarely can be analysed from old museum types or fossils. During the last 20 years, more than 150 molecular studies have challenged the current phylogenetic classification of the family Drosophilidae Rondani based on morphological characters. Most studies concerned a single genus, Drosophila Fallén, and included only few representative species from 17 out of the 78 genera of the family. Therefore, these molecular studies were unable to provide an alternative classification scheme. A supermatrix analysis of seven nuclear and one mitochondrial genes (8248 bp) for 33 genera was conducted using outgroups from one calyptrate and four ephydroid families. The Bayesian phylogeny was consistent with previous molecular studies including whole genome sequences and divided the Drosophilidae into four monophyletic clades. Morphological characters, mostly male genitalia, then were compared thoroughly between the four clades and homologous character states were identified. These states were then checked for 70 genera and a revised phylogenetic, family-group classification for the Drosophilidae is proposed. Two genera –Cladochaeta Coquillett and Diathoneura Duda – of the tribe Cladochaetini Grimaldi are transferred to the family Ephydridae. The Drosophilidae is divided into two subfamilies: Steganinae Hendel (30 genera) and Drosophilinae Rondani (43 genera). A further two genera, Apacrochaeta Duda and Sphyrnoceps de Meijere, are incertae sedis, and Palmophila Grimaldi, is synonymized with Drosophilasyn.n. The Drosophilinae is subdivided into two tribes: the re-elevated Colocasiomyini Okada (nine genera) and Drosophilini Okada. The paraphyly of the genus Drosophila was not resolved to avoid affecting the binomina of important laboratory model species; however, its subgeneric classification was revised in light of molecular and morphological data. Three subgenera, namely Chusqueophila Brncic, Phloridosa Sturtevant and Psilodorha Okada, were synonymized with the subgenus Drosophila (Drosophila) Fallén syns.n. Among the 45 species groups and 5 species complexes of Drosophila (Drosophila), 22 groups and 1 complex were transferred to the subgenus Drosophila (Siphlodora) Patterson & Mainland and 6 groups, 2 species subgroups and 3 complexes are considered incertae sedis within the genus Drosophila. Different morphological characters provide different signals at different phylogenetic scales: thoracic characters (wing venation and presternal shape) discriminate families; grasping and erection-related characters discriminate subfamilies to tribes; whereas phallic paraphyses, i.e. auxiliary intromittent organs, discriminate genera and Drosophila subgenera. The study shows the necessity of analysing morphological characters within a molecular phylogenetic framework to translate molecular phylogenies into taxonomically-comprehensive classifications.
Article
The Brazilian cerrado (savanna) biome covers 2 million km2representing 23% of the area of the country. It is an ancient biome with rich biodiversity, estimated at 160000 species of plants, fungi and animals. There are about 800 species of trees and large shrubs in the savanna vegetation and several times that number of ground species (herbs and subshrubs). When the flora of gallery forests, mesophytic forests and other habitats occurring in the biome are included, the total number of vascular plant species is estimated to reach about 10000. During the last 25 years modern agriculture has been developed in the cerrado to produce soya, maize, rice, etc and enormous numbers of cattle are raised in planted pastures. Charcoal production for the Brazilian steel industry also causes great destruction of the cerrado. By 1994 an estimated 695000 km2of cerrado (representing 35% of its area) had been converted to ‘anthropic landscape’. This compares to the destruction of about 400000 km2of Brazilian Amazonian forest representing 12 or 13% of the area of this biome. Conservation initiatives are now desperately needed. Only 1.5% of the cerrado biome is preserved as Federal Reserves and this area needs to be at least tripled. Surveys of the vascular flora aimed at discovering biogeographic patterns are now in progress with the objective of choosing representative areas and biodiversity ‘hot spots’ for conservation.
Article
Morphologically cryptic species act as a wild card when it comes to biodiversity assessments and conservation, with the capacity to dramatically alter our understanding of the biological landscape at the taxonomic, ecological, biogeographic, evolutionary, and conservation levels. We discuss the potential effects that cryptic species may have on biodiversity assessments and conservation, as well as some of the current issues involving the treatment of cryptic species both at taxonomic and conservation levels. In addition, using a combination of advertisement call and morphological data, we describe a new species of the Leptodactylus marmoratus group from the upper Amazon basin, and we assess how cryptic species can affect conservation assessments of species in the Leptodactylus marmoratus group by examining how recent findings affect our understanding of the distribution of what is assumed to be a widespread Amazonian species, Leptodactylus andreae.
Article
The Drosophila willistoni group consists of 23 species of which six are sibling species and belong to the D. willistoni subgroup: D. willistoni, Drosophila equinoxialis, Drosophila tropicalis, Drosophila insularis, Drosophila pavlovskiana and Drosophila paulistorum. These sibling species are abundant in the Neotropical region and can hardly be differentiated by the usual taxonomic traits. Four of them (D. willistoni, D. equinoxialis, D. tropicalis and D. paulistorum) cover extensive geographic distribution areas overlapping in places while two of them are endemic (D. insularis and D. pavlovskiana). In this study, we presented a method for the identification of five sibling species of the D. willistoni subgroup based on the allozyme variation of acid phosphatase-1 (Acph-1) in acrylamide gel electrophoresis. Our work showed that Acph-1 allozyme differences can be used for species-diagnostic characterization. This method was shown to be a more efficient tool for species identification than others because it is both quicker and produces reliable results.
Article
Biologists are still trying to grasp the global dimensions of the phylum Arthropoda and its major class the Insecta, in spite of the fact that over a million species of arthropods have been described. The canopy of rain forest trees is believed by many to hold the key to the immense diversity of insects. In recent years the use of knock-down insecticides to sample insects from rain forest canopy has revealed information on the canopy's arthropod inhabitants and community structure. The sampling techniques involved are outlined and data reviewed on taxonomic and guild structure, species abundance, body size and biomass of insects, and the faunal similarity of trees. Calculations by Erwin (1982), based on knock-down insecticide studies of the beetle fauna of one species of Central American tree, suggest there may be 30 million species of tropical forest arthropods. Reanalysis of these calculations, using additional data, produces a range of possible estimates from about 10 to 80 million. The unknown range of plant host-specificities of tropical insects is the main weakness of this method of calculation. Assessment of the faunal importance of the canopy in relation to that of other rain forest biotopes requires comparative quantitative studies. The preliminary results of one such simple study suggest that over 42 million arthropods may be found in a hectare of Seram rain forest (at the time of study), and that 70% occur in the soil and leaf litter and 14% in the canopy. They also suggest that Collembola and Acarina are the dominant groups in this hectare, and that there are as many ants as all the other insects (excluding Collembola).
Article
Although natural populations of drosophilid flies have been the subject of ecological studies, the population ecology of these insects in the tropics is still poorly known. This paper discusses aspects of the relationship between droso-philids and their environment, based on 28 monthly collections made in two contrasting vegetations of the Brazilian Cerrado biome: gallery forest and savanna. Exotic species were found in both types of environment; but 14 of the 30 captured Neotropical species occurred exclusively in the gallery forests, probably because of their climatic stability and greater environmental heterogeneity. Even though some endemic species were more abundant in the dry and cold months, most populations exhibited peaks of abundance in the wet season. The species diversity indexes (H ′ and D), higher in the dry season, were probably affected by increased evenness at this time of year, when the populations of practically all the species are greatly reduced. As species richness in the savanna vegetation clearly decreased in the dry season, increasing again in the wet season, it is suggested that some drosophilids migrate to the forests when climatic conditions are too stressful in the savannas.
Article
Erwin's much debated estimate of 30 million species of arthropods is revised. The original estimate is based on the evaluation of host specificity of guilds in beetle samples, and subsequent hierarchical ratio extrapolations. The growing number of studies including mass sampling of arthropods have provided several data sets suitable for obtaining an empirical basis of this estimate. The structure in this modified version is somewhat changed compared to the original estimate in order to make each hierarchical step more easily testable. Plant species are separated into different growth forms, and host specificity measures are based only on phytophagous species. Effective specialization is applied as a measure of host specificity to correct for the fauna shared between plant species. A between community correction factor is applied to correct for differences in host specificity at different spatial scales. There are still great uncertainties attended with such estimates. The largest problems refer to the between community correction factor and the proportion of canopy species to total species. Further work on host specificity and the least known hyperdiverse groups are also needed. The revised version of the estimate does not support hyperestimates of 30 100 million species. Rather, it compares nicely with estimates derived from other estimation methods, indicating a global arthropod species richness of 5–10 million species.
Article
The Cerrado is one of the world's biodiversity hotspots. In the last 35 years, more than 50% of its approximately 2 million km² has been transformed into pasture and agricultural lands planted in cash crops. The Cerrado has the richest flora among the world's savannas (>7000 species) and high levels of endemism. Species richness of birds, fishes, reptiles, amphibians, and insects is equally high, whereas mammal diversity is relatively low. Deforestation rates have been higher in the Cerrado than in the Amazon rainforest, and conservation efforts have been modest: only 2.2% of its area is under legal protection. Numerous animal and plant species are threatened with extinction, and an estimated 20% of threatened and endemic species do not occur in protected areas. Soil erosion, the degradation of the diverse Cerrado vegetation formations, and the spread of exotic grasses are widespread and major threats. The use of fire for clearing land and to encourage new growth for pasture has also caused damage, even though the Cerrado is a fire-adapted ecosystem. Ecosystem experiments and modeling show that change in land cover is altering the hydrology and affecting carbon stocks and fluxes. Cerrado agriculture is lucrative, and agricultural expansion is expected to continue, requiring improvements in and extension of the transportation infrastructure, which will affect not only the Cerrado but also the Amazon forest. Large-scale landscape modification and threats to numerous species have led to renewed interest from various sectors in promoting the conservation of the Cerrado, particularly through strengthening and enlarging the system of protected areas and improving farming practices and thus the livelihoods of local communities.
Article
Focuses on tropical environments, examining how insects respond to seasonality in rainfall and in sunshine (in part related to diurnal rainfall distribution). Attention is paid not only to physiological and ecological constraints which affect seasonal timing of activity, but also responses to non-seasonal activity patterns. -P.J.Jarvis
Article
Forest canopies contain a major proportion of the diversity of organisms on Earth and constitute the bulk of photosynthetically active foliage and biomass in forest ecosystems. For these reasons canopy research has become integral to the management of forest ecosystems, and to a better understanding of global change. Ecological research in forest canopies is relatively recent and has been primarily descriptive in scope. The development of new methods of canopy access has enabled scientists to conduct more quantified research in tree crowns. Studies of sessile organisms, mobile organisms, and canopy interactions and processes have emerged as subdisciplines of canopy biology, each requiring different methods for collecting data. Canopy biology is beginning to shift from a descriptive autecology of individuals to a more complex ecosystem approach, although some types of field work are still limited by access. Questions currently addressed in canopy research are extremely diverse but emphasize comparisons with respect to sapatial and temporal variation. Spatial scales range from leaves (e.g. quantifying the number of mites on individual phylloplanes) to trees (e.g. measuring photosynthesis between sun and shade leaves), to forest stands (e.g.measuring turbulence above the canopy), and entire landscapes (e.g. comparing mammals between different forest types). Temporal variation is of particular significance in tropical forest canopies, where populations of organisms and their resources have diurnal, seasonal, or even annual periodicity. As the methods for canopy access improve, more rigorous hypotheses-driven field studies remain a priority of this newly coalesced discipline.
Article
Conservationists are far from able to assist all species under threat, if only for lack of funding. This places a premium on priorities: how can we support the most species at the least cost? One way is to identify 'biodiversity hotspots' where exceptional concentrations of endemic species are undergoing exceptional loss of habitat. As many as 44% of all species of vascular plants and 35% of all species in four vertebrate groups are confined to 25 hotspots comprising only 1.4% of the land surface of the Earth. This opens the way for a 'silver bullet' strategy on the part of conservation planners, focusing on these hotspots in proportion to their share of the world's species at risk.
Article
Examination of genetic and ecological relationships within sibling species complexes can provide insights into species diversity and speciation processes. Alpheus angulatus and A. armillatus, two snapping shrimp species with overlapping ranges in the north-western Atlantic, are similar in morphology, exploit similar ecological niches and appear to represent recently diverged sibling species. We examined phylogenetic and ecological relationships between these two species with: (i) sequence data from two mitochondrial genes (16S rRNA and COI); (ii) data on potential differences in microhabitat distribution for A. armillatus and A. angulatus; and (iii) data from laboratory experiments on the level of reproductive isolation between the two species. DNA sequence data suggest A. armillatus and A. angulatus are sister species that diverged subsequent to the close of the Isthmus of Panama, and that haplotype diversity is lower in A. armillatus than in A. angulatus. Both species are distantly related to A. heterochaelis and A. estuariensis, two species with which A. angulatus shares some similarities in coloration. Ecological data on the distribution of A. angulatus and A. armillatus from two locations revealed differences in distribution of the two species between habitat patches, with each patch dominated by one or the other species. However, there was no apparent difference in distribution of the two species within habitat patches with respect to microhabitat location. Ecological data also revealed that heterospecific individuals often occur in close proximity (i.e. within metres or centimetres) where sympatric. Behavioural data indicated that these species are reproductively isolated, which is consistent with speciation in transient allopatry followed by post-divergence secondary contact. Our data further resolve taxonomic confusion between the sibling species, A. armillatus and A. angulatus, and suggest that sympatry in areas of range overlap and exploitation of similar ecological niches by these two recently diverged species have selected for high levels of behavioural incompatibility.