ArticlePDF Available

Abstract and Figures

Pea is the second most important food legume crop in the world. Rust is a pea disease widely distributed, particularly in regions with warm, humid weather. Pea rust can be incited by Uromyces viciae-fabae and by U. pisi. U. viciae-fabae prevails in tropical and subtropical regions such as India and China, while U. pisi prevails in temperate regions. Chemical control of rust is possible, but the use of host plant resistance is the most desired means of rust control. In this paper we revise and discuss the occurrence and incidence of both pathogens on peas, the availability of resistance sources and the present state of the art in pea breeding against this disease.
Content may be subject to copyright.
135
Review Czech J. Genet. Plant Breed., 50, 2014 (2): 135–143
Resistance to Rusts (Uromyces pisi and U. viciae-fabae) in Pea
E BARILLI 1, J C SILLERO 2, E PR ATS 1 and D RUBIALES1
1Institute for Sustainable Agriculture, Spanish National Research Council (CSIC), Córdoba,
Spain; 2Andalusian Institute of Agricultural Research and Training (IFAPA), Córdoba, Spain
Abstract
B E., S J.C., P E., R D. (2014): Resistance to rusts (Uromyces pisi and U. viciae-fabae)
in pea. Czech J. Genet. Plant Breed., 50: 135–143.
Pea is the second most important food legume crop in the world. Rust is a pea disease widely distributed, par-
ticularly in regions with warm, humid weather. Pea rust can be incited by Uromyces viciae-fabae and by U. pisi.
U. viciae-fabae prevails in tropical and subtropical regions such as India and China, while U. pisi prevails in
temperate regions. Chemical control of rust is possible, but the use of host plant resistance is the most desired
means of rust control. In this paper we revise and discuss the occurrence and incidence of both pathogens on
peas, the availability of resistance sources and the present state of the art in pea breeding against this disease.
Keywords: breeding; histology; Pisum sativum; resistance; rust
Grain legumes are important crops which can de-
crease the marked deficit of high-protein feedstuff
and contribute to a large extent to the sustainability
of crop-livestock systems (C et al. 2003;
A & I 2008). Among them,
dry pea (Pisum sativum L.) is the second most im-
portant food legume crop in the world because of its
high yield potential (A & I
2008; R et al. 2011a; S et al. 2012).
Pea rust has become an important pathogen of
dry pea since the mid-1980s and is mostly distrib-
uted in Europe, North and South America, India,
China, Australia and New Zealand, particularly in
regions with warm, humid weather (EPPO 2012).
The pathogen usually appears during mid-spring
when the crop is at flowering or podding stage. In
years of epidemics, affected leaves dry up and fall off,
and pods remain undeveloped, which consequently
results in yield losses of higher than 30% (EPPO
2012). Chemical control of rust is possible (S
et al. 2004; E et al. 2011), but the use of host
plant resistance is the most desired means of rust
control (R et al. 2011a).
Pea rust has been reported to be caused either by
the fungus Uromyces viciae-fabae (Pers.) J. Schröt
[syn. U. fabae (Pers.) de Bary] (P et al. 1980; X
& W 2001; S et al. 2004; V-
 et al. 2005; K et al. 2006) or by U.pisi
[(Pers.) Wint.] (E et al. 2005; B et al.
2009a, b). The species complex U. viciae-fabae, com-
monly referred to as faba bean rust, is an autoecious
fungus reported to infect pea besides faba bean (Vi-
cia faba L.), lentil (Lens culinaris L.) and common
vetch (Vicia sativa L.) (C 1978). Isolates of
U. viciae-fabae are specialized with respect to their
hosts, with each isolate exclusively infecting cultivars
of the species from which it was collected (E
et al. 2005; R et al. 2013). U. viciae-fabae is
the principal causal agent of pea rust in tropical and
subtropical regions like India and China, where warm
humid weather is suitable for the appearance of both
the uredial and the aecidial stage (K et al.
2006). However, in temperate regions, it has been
observed that although pea seedlings can be infected
by U. viciae-fabae, it barely gets established and pro-
gresses under field conditions slowly (B et al.
2009c). These observations were confirmed by gath-
ering several rust isolates from highly damaged pea
crops from different geographical regions (Canada,
Czech Republic, Egypt, Morocco and Spain). Mo-
lecular analyses confirmed that all isolates belonged
to U. pisi rather than to U. viciae-fabae (B et
al. 2011). U. pisi is a heteroecious macrocyclic fun-
gus that completes its life cycle on the spontaneous
136
Czech J. Genet. Plant Breed., 50, 2014 (2): 135–143 Review
Euphorbia cyparissias (cypress spurge) (P 1952),
over the vegetation residues of which the fungus
overwinters as teliospores (P & R 2000).
Spermatogonia and aecia develop on this alternate
host, while the pathogen produces several generations
of urediniospores on pea leaves and stems. In India
it has been reported that U. viciae-fabae aeciospores
act as repeating spores and play an important role in
the outbreak of the disease (K et al. 2006),
whereas in temperate regions urediospores are the
only infecting spores in the case of U. pisi (X &
W 2001).
The U. pisi host range is wide, being able to affect
plant species from many other genera (Astragalus,
Cicer, Euphorbia, Lathyrus, Lens, Medicago, Oro-
bus, Pisum and Vicia, among others) (B et al.
2012a; F et al. 2008; V P et al. 2009a).
U.viciae-fabae is circumglobal on Lathyrus, Pisum
and Vicia, with V. f aba the host of the neotype (C-
 1978). However, host-specialized isolates that
cannot infect V. fab a have been reported (E
et al. 2005, 2008; R et al. 2013). In addition,
the pathogen has been described infecting plants
from the genera Ervum, Lens, Melilotus and Orobus
(F et al. 2008).
Screening and sources of resistance
Many efforts have been made to identify sources
of resistance in pea against U. viciae-fabae (P
et al. 1980; X & W 2001; Set al.
2004; V et al. 2005; K et
al. 2006). These studies revealed that the major-
ity of the studied pea genotypes were susceptible,
though genotypic differences in the rust intensity
described as of slow rusting type have been reported
(K et al. 1994; C et al. 2006) (Table 1).
Slow rusting resistance against U. viciae-fabae has
been characterised by measuring the area under the
disease progress curve (AUDPC), the disease sever-
ity (DS), the number of pustules/leaf or infection
frequency(IF) and the pustule size (C et al.
2006). The authors considered that AUDPC values
were more precise for genotype selection than DS.
An exception was reported for the accessions
PJ22211, PJ207508, EC109188, which were found
to be immune to U. viciae-fabae infection (P et
al. 1979), while in F2 and backcross generation there
were symptoms of hypersensitive reaction to the
pathogen that were typified by the presence of large
numbers of minute brown islands on the leaves.
Little work has been performed with U. pisi resist-
ance in Pisum and only recently a pea germplasm
collection has been screened to identify sources of
resistance to this pathogen both under field and growth
chamber conditions (B et al. 2009b) (Table 1).
Different epidemiological parameters, such as DS and
AUDPC (as mentioned above), as well as infection
type(IT), epidemic growth rate (r) and time of the
first pustule appearance (t0) were investigated, as well
as the relationship between them, in order to identify
the parameters that better characterize the resistance
to U. pisi in both conditions. No complete resistance
has been identified so far. However, incomplete resist-
ance was common in the collection, with more than
60% of the accessions showing markedly lower severity
values than the susceptible check. All the accessions
displayed a compatible interaction (high infection
type) both in adult plants under field conditions and
in seedlings under growth chamber conditions, but
with varying levels of disease reduction (B et al.
2009b) (Figure 1), suggesting the existence of partial
resistance sensu P (1983). The correlation
observed between DS values measured under field
conditions during three growing seasons, and between
DS and AUDPC was high (B et al. 2009b) sug-
gesting that the final DS estimation on pea provides a
feasible estimation of partial resistance. DS estimation
Table 1. Reported sources of pea resistance to Uromyces viciae-fabae and U. pisi
Disease Source of resistance Gene related References
U. viciae-fabae Bridzor,EC4294, EC9218, EC955 EC9908,
NP29, Perf 3268, IC4604
S et al. (1974)
PJ207508, PJ22211, EC109188 monogenic inheritance P et al. (1979, 1980)
RPB-22, RA-10-5, RC-35-2 A and P (1990)
Pant P11, FC1, HUDP 16, JPBB 3, HUP 14 monogenic (putative Ruf )
inheritance
C et al. (2006);
K et al. (2006)
U. pisi IFPI3260, PI347321, PI347336, PI347347,
PI343935, PI343965, PI347310
inheritance under study B et al. (2009a, b)
137
Review Czech J. Genet. Plant Breed., 50, 2014 (2): 135–143
needs less computation and is less time-consuming
than assessing AUDPC, epidemic growth rate (r) or
the first pustule appearance (t0). The epidemic growth
rate and the first pustule appearance were poor esti-
mators of U. pisi partial resistance as they were less
discriminating than the other parameters and showed
a low correlation within experimental designs.
Growth chamber studies have shown that DS values
are higher on the abaxial than on the adaxial leaf
surface. The vertical shape of a U. pisi substomatal
vesicle that penetrates deeper into the leaf mesophyll
should be the cause of this finding (E et al.
2005). There was a good correlation between DS
measured in the growth chamber and adult plants in
the field, proving that selection for partial resistance
to pea rust can be effectively performed in seedlings.
Lack of durability of resistance is a problem of
airborne fungal pathogens like rusts. Several mecha-
nisms may prevent the rust infection prior to stomatal
penetration (R & N 1996; S & R-
 2002; S et al. 2006; Pet al. 2007a;
R et al. 2011b). These can include limited
germination or germling adhesion to the leaf surface
(M 1978) and/or altered stomatal guard
cell morphology (W 1976). The limited varietal
differences in spore germination observed in the
U.pisi-pea pathosystem agreed with previous reports
in which reduction of urediospore germination and
fungal development on the leaf surface are of marginal
importance in reducing infection levels within the
host species (N & R 2002). In general,
most resistance mechanisms to rust infection occur
after the formation of substomatal vesicles, before
or after mesophyll cell penetration. A relatively high
proportion of germlings failing to form any haustoria
in mesophyll cells causing “early aborted colonies”
has been observed in some pea accessions (Table 2).
Probably, epidermal cells developed papillae and/or
cell wall strengthening under the site of the attempted
attack avoiding the fungus penetration, as described
previously in other plant-rust interactions (P
et al. 2007b; R-M et al. 2007). Further
studies are currently carried out to study host cell
Figure 1. Symptoms observed two weeks after Uromyces
pisi inoculation on pea susceptible (Messire, right) and
partially resistant (PI347321, left) genotypes
Table 2. Reaction of selected accessions of Pisum spp. to inoculation with Uromyces pisi under growth chamber condi-
tions (according to B et al. 2009a)
Accession Species
Macroscopical components
of resistance
Microscopical components of resistance
2 DAI 6 DAI
IT LP (%) IF early abortion
(%)
No. of haust/
colony
colony size
(mm2)
Messire (check)
P. sativum
4100 100.0 0.0 10.8 0.6
PI347321 4108* 25.9* 10.5* 3.5* 0.38*
PI347336 4106* 30.9* 3.5* 6.4* 0.38*
PI347347 4104* 30.2* 6.0* 5.2* 0.41*
PI343965 4104* 30.9* 0.0 6.3* 0.36*
PI347310 4104* 29.5* 0.0 4.2* 0.41*
IFPI3260 P. fulvum 4107* 13.7* 20.0* 2.2* 0.26*
*Significantly different from Messire (LSD test, P <0.01); IT – infection type according to S et al. (1962) scale;
LP – latent period measured as period of time (h) between inoculation and sporulation of 50% of the pustules; values
are presented as % with respect to the susceptible Messire (= 200 h); IF – infection frequency measured as number of
pustules per cm2; values are presented as % with respect to the susceptible Messire (= 139 pustules/cm2); DAI– days
after inoculation
138
Czech J. Genet. Plant Breed., 50, 2014 (2): 135–143 Review
wall modifications in response to U. pisi. In several
resistant genotypes the first haustorial mother cells
succeeded in penetrating the mesophyll cell and form-
ing a haustorium, subsequent penetration attempts
by secondary hyphae failed, reducing the number
of haustoria per colony and therefore hindering the
number of hyphal tips and the growth of the colony
(B et al. 2009a). A similar resistance mecha-
nism was found in Lathyrus sativum and L. cicera,
Medicago truncatula, wheat, garlic, chickpea and
faba bean against U. pisi (V  P  et al. 2009a,b),
U.striatus (R & M 2004; R
et al. 2011b), Puccinia triticina (R & N
1995), P. allii (F-A et al. 2011),
U.ciceris-arietini (S et al. 2012) and U.viciae-
fabae (S et al. 2000; S & R
2002), respectively. All the selected accessions to
U. pisi showed a critical decrease in the number of
hyphal tips per colony compared to the susceptible
check suggesting that haustorial mother cells have
been formed but are not functional or that they have
a reduced ability to successfully develop a hausto-
rium in the plant cell, as found in faba bean against
U. viciae-fabae (R & S 2003). Thus,
penetration resistance is an important mechanism
to prevent the full development of U.pisi infection
structures. This resistance is initially expressed with
the arrest of the infection by early abortion, and con-
tinued by hampering subsequent haustoria formation.
Macroscopically, penetration resistance resulted in
smaller colonies that developed more slowly than
the susceptible control as reflected by the negative
correlation observed between latent period (LP) and
colony size (CS) at any day after inoculation.
When the haustoria invade host cells, hypersensi-
tive response (HR) can be triggered. The HR is often
mediated by the genetic interaction of a host-encoded
resistance (R) gene product with that of a pathogen
avirulence (avr) gene leading to programmed cell
death, thus limiting fungal development (S &
R 2002). The HR is common in biotrophic
pathogen-plant interactions and was described in
cereal and legume responses to rust, among others
(T & R 1990; S & R
2002; S et al. 2006). HR may be triggered early
or late depending on the specific host genotype. How-
ever, we did not observe any HR in pea against U. pisi.
Resistance was not associated with host cell death
2days after inoculation (DAI) in any of the accessions
studied (B et al. 2009a), discarding the fast HR
hypothesis. Neither was host cell death observed later
(6 DAI) (B et al. 2009b) discarding also the pos-
sibility of late-acting HR that was reported in other
interactions such as L. cicera-U. viciae-fabae (V 
P et al. 2009b), V. f ab a-U. viciae-fabae (H
et al. 2001; S & R 2002) and barley-
Puccinia hordei (N 1986). Incomplete resistance
identified in pea against U. pisi is not therefore based
on HR, fitting the definition of Partial Resistance (PR)
(P & V O 1975). Similarly, PR
against rusts has also been reported in other legumes
such as faba bean (S et al. 2000; H et
al. 2001), common bean (S & MV 1987),
grass pea (V P et al. 2009a), chickling pea
(V P et al. 2009b) and chickpea (M et
al. 2008; S et al. 2012).
The fact that the studied resistant accessions
showed pre-penetration resistance offers breeding
opportunities for this trait. This is important since
penetration resistance is usually non-race dependent
and based on multiple genes. Thus, such resistance
is expected to be more durable than single gene
controlled race-specific resistance that, although
easily manipulated in plant breeding, is also easily
overcome by new races of pathogens. Accessions
IFPI3260 and PI347321 have been included in our
breeding programmes and their molecular bases of
resistance to U. pisi are under study.
Inheritance of resistance
To date, studies on the genetic basis of resistance
to U. viciae-fabae have indicated either monogenic
(P et al. 1979; K & R 1987) or polygenic
control (K et al. 1994; V et al.
2005). The dominant nature of partial resistance
against faba bean rust U. viciae-fabae in pea, recorded
as reduced infection frequency, has been justified
as the expression of a single major gene, for which
the symbol Ruf was proposed (V et al.
2005), but the authors also presented some evidence
suggesting involvement of some polygenes as well.
Further, none of the pea genotypes has been reported
to be free from U. viciae-fabae infection (S &
S 1985; C et al. 2006) suggesting a
polygenic type of resistance or based on incomplete
gene expression.
More recently, R et al. (2011) suggested that the
Ruf gene proposed by V et al. (2005)
be now redesigned as Qruf to signify the quantita-
tive nature of its action and detected another minor
quantitative trait loci (QTL) (named Qruf1). Both
QTLs were located on LGVII. Qruf was flanked by
SSR markers, AA505 and AA446 (10.8 cM), explaining
139
Review Czech J. Genet. Plant Breed., 50, 2014 (2): 135–143
22.2–42.4% and 23.5–58.8% of the total phenotypic
variation for IF and AUDPC, respectively. Qruf was
consistently identified across four environments.
Therefore, the SSR markers flanking Qruf would be
useful for marker-assisted selection for U. viciae-fabae
resistance. The minor QTL was environment-specific,
and it was detected only in the polyhouse (logarithm
(base 10) of odds values 4.2 and 4.8). It was flanked
by SSR markers, AD146 and AA416 (7.3 cM), and ex-
plained 11.2–12.4% of the total phenotypic variation.
In pea, two segregating populations derived from
the crosses between a resistant and a susceptible ac-
cession of P. fulvum L. (IFPI3260 × IFPI3251) and of
P. sativum (PI347321 × Messire) have recently been
developed to study the resistance against U.pisi. In
an early study using the IFPI3260 × IFPI3251 cross,
F2 plants were evaluated in the field and F3fami-
lies under growth chamber conditions assessing DS
and IT values as mentioned above. A wide range
of disease reactions was found in the population,
although high IT values, indicating the absence of
hypersensitive response, were observed on all the
lines. Preliminary results on this population revealed
polygenic inheritance. A single QTL was detected,
UP1, located between markers OPY11_1316 and
OPV17_1078 to govern the resistance of P. fulvum
accession IFPI3260 to U. pisi under controlled con-
ditions, although there was a hint of a second QTL
between markers OPAB12_125 and OPY11_1361. This
QTL, UP1, explained up to 60% of the phenotypic
variance (B et al. 2010a).
A RIL (Recombined Inbred Line) population de-
rived from this cross is being developed at present
in order to perform the required replications of field
tests, characterizing their effects and validating the
stability of QTLs across environments. Besides, a
RIL population derived from the cross PI347321×
Messire (P. sativum intraspecific cross) has also been
developed and F6 plants have been evaluated against
U. pisi under both natural and controlled conditions
(unpublished data) and QTL analysis is under study
in this moment.
Molecular markers linked to resistance genes could
facilitate the selection of rust resistant segregants
and thereby improve breeding efficiency. So far, re-
ports on molecular mapping of resistance to U. pisi
are limited and more robust markers are needed.
But rust resistance breeding is not only slow due to
these still insufficient genomic resources, but also,
and mainly because of the little knowledge of the
biology of various rust pathogens, it still lacks the
knowledge of the basic aspects such as the existence
of races and their distribution. Only after significant
input to improve the existing knowledge of biology
of the causal agents as well as of the plant, resistance
breeding will be efficiently accelerated.
Induced resistance
In order to validate alternative pea rust control
methods, a preliminary study on systemic acquired
resistance (SAR) induction on this plant-pathogen
interaction was developed using both biotic (U. pisi
and U. appendiculatus) and abiotic (salicylic acid
(SA), benzo-(1,2,3)-thiadiazole-7-carbothionic acid
(BTH) and DL-β-aminobutyric acid (BABA)) inducers
(B et al. 2010b). Results obtained showed a
significant reduction of infection levels locally and
systemically with BTH and BABA foliar treatments,
whereas neither biotic inducers nor SA had any
significant effect hampering the rust development.
BTH is a chemical SAR inducer against a wide range
of pathogens even though its effect varied with the
concentrations used and the pathosystems considered
(V L 2001). The expression of BTH-induced
SAR has been associated with transcriptional acti-
vation of gene encoding pathogenesis-related (PR)
proteins promoted by endogenous accumulation of
SA (J et al. 2008). In the rust-sunflower and rust-
wheat interaction, BTH-induced SAR has also been
associated with the excretion of phytoalexins to the
leaf surface, which inhibited urediospore germination
and appressorium formation (P  et al. 2002).
The cellular and molecular mechanisms through
which BABA exerts its action are not so well re-
ported as those of BTH. Also, its capacity to confer
protection against basidiomycetes in general, and
rusts in particular, is contradictory (A &
C 2007). In sunflower, unlikely BTH, BABA
does not seem to induce any inhibitory effect on
Puccinia helianthi on the events prior to stomatal
penetration (A & C 2007), suggesting
that the resistance induced by these two chemicals
operates via different pathways.
To clarify the underlying mechanisms acting in the
BTH and BABA-induced resistance in pea against
U. pisi, the specific enzymatic activity enhanced in
a susceptible and in a partially resistant pea geno-
type was studied (B et al. 2010c). The disease
reduction observed after treatment with the induc-
ers was not complete. Treatment with 10mM BTH
and 50mM BABA effectively reduced the infection
frequency, with this reduction being higher in the
partially resistant than in the susceptible genotype.
140
Czech J. Genet. Plant Breed., 50, 2014 (2): 135–143 Review
The reduction in IF cannot be attributed to the toxic
effect of the chemicals on the fungus, as neither of
them showed a fungistatic activity against U. pisi
urediospores. Furthermore, the observed protective
effect was related to triggering of defence responses,
as reported for other plant-pathogen interactions
(P et al. 2002; I & F 2003; A
& C 2007).
Resistance was characterized by reduced infection
frequency mainly due to decreases in appressorium
formation, stomatal penetration, growth of infec-
tion hyphae and haustorium formation. Changes in
β-1,3-glucanase, chitinase, phenylalanine ammonia-
lyase and peroxidase activities and in total phenolic
content demonstrate that U. pisi resistance is in-
duced by BTH and BABA treatments at early and
late stages of the fungal infection process, but that
the chemicals operate via different mechanisms. In
fact, we should observe that BTH treatment primed
the activity of pathogenesis-related proteins such as
β-1,3-glucanase, chitinase and peroxidase in both
susceptible and resistant genotypes. On the other
hand, BABA treatment did not increase the enzymatic
activities in the studied genotypes, but significantly
increased their total phenolic contents. This increase
was also observed in BTH treated plants. In addi-
tion, preliminary results showed differences in the
amount and nature of particular phenolic compounds,
excreted to the leaf surface following the treatment
with both inducers (unpublished). This suggests a role
for phenolic compounds in the induced resistance
exerted by both BTH and BABA. It has been well
documented in different pathosystems that phenolic
compounds can play an important role in disease
resistance, limiting fungal germ tube development
or appressorium formation and contributing to the
cell wall strengthening (lignins), thus preventing the
plant tissue colonisation (P et al. 2002). The
induction of the phenolic biosynthesis pathway by
both inducers might therefore actively contribute to
the resistance to U. pisi. In order to confirm this hy-
pothesis, a proteomic approach was applied (B
et al. 2012b). Two-dimensional electrophoresis (2-DE)
was used in order to compare the leaf proteome of the
susceptible and the partially resistant pea genotypes
in response to parasite infection under the effect
of BTH and BABA. Multivariate statistical analysis
identified 126 differential protein spots under the
experimental conditions (genotypes/treatments). All
of these 126 protein spots were subjected to MALDI-
TOF/TOF mass spectrometry to deduce their pos-
sible functions. A total of 50 proteins were identified
using a combination of peptide mass fingerprinting
(PMF) and MSMS fragmentation. Most of the identi-
fied proteins corresponded to enzymes belonging to
photosynthesis, metabolism, biosynthesis, binding
and defence response, whose behaviour pattern was
different in relation to susceptibility/resistance of the
studied genotypes and to the BTH/BABA induction
to pathogen response. Results obtained in this work
suggested that plants could reduce their photosyn-
thesis and other energy metabolism and enhance
the production of defence-related proteins to cope
with the stress. On the other side, we postulated that
resistance induced by the chemicals operates via
different mechanisms: BABA inducer could act via
phenolic biosynthesis pathway, whereas resistance
provided by BTH inducer seems to be mediated by
defence and stress-related proteins. These results
provide a step to understand the molecular basis of
the induced resistance to rust in pea. Nevertheless,
a higher collection of candidates will be essential
to elucidate target key elements involved in SAR
response using integrated studies.
CONCLUSIONS
Pea rust is a serious disease of pea of the world-
wide distribution. Although no completely effective
source of resistance has been found, considerable
progress has been made in identifying germplasm
with moderate levels of resistance. The effectiveness
of these incomplete levels of resistance in reducing
U. pisi infection remains to be quantified, but might
represent a major progress when compared to the
lack of any means for the control of this rust one
or two decades ago. Peas can be protected now by
combining this resistance with cultural management
options, selective fungicides and by biocontrol agents
representing opportunities that did not exist before.
The current focus in applied breeding is taking
advantage of biotechnological tools to develop more
and better markers to allow marker-assisted selection
with the hope that this will accelerate the delivery of
improved cultivars to the farmer. Our understand-
ing of the genetics of resistance to pea rust in the
available germplasm has improved considerably,
but progress in marker development and delivery
of useful markers is still limited. We are currently
facing an accelerated progress in genomic and bio-
technological research, which should soon provide
important understandings on pathogen-host interac-
tions and will provide candidate genes for resistance
to pea rust. The effectiveness of MAS might soon
141
Review Czech J. Genet. Plant Breed., 50, 2014 (2): 135–143
increase with the adoption of new improvements in
marker technology together with the integration of
comparative mapping and functional genomics. For
this reason, the new genome-wide approach is emerg-
ing as a powerful tool for identifying quantitative
characters, and its application to U. pisi resistance
offers a significant potential.
Comprehensive studies on the host status and
virulence of causal agents are often missing being
a major limitation for any breeding programme.
Only after a significant input to improve the exist-
ing knowledge of the biology of causal agents as
well as of the host plant, resistance breeding will be
accelerated efficiently.
Acknowledgements. e authors would like to thank pro-
jects AGL2011-22524, co-financed by FEDER for financial
support and to Ana Moral for technical assistance along the
years. Eleonora Barilli is postdoc funded by I3P program.
References
A B., P A.B. (1990): Association of rust resist-
ance with some biochemicals in peas. Indian Journal of
Horticulture, 47: 66–69.
A E., C Y. (2007): Comparative efficacy of sys-
temic acquired resistance-inducing compounds against
rust infection in sunflower plants. Phytopathology, 97:
179–186.
A P., I A. (2008): Adaptation strat-
egy, germplasm type and adaptive traits for field pea
improvement in Italy based on variety responses across
climatically contrasting environments. Field Crop Re-
search, 108: 133–142.
B E., S J.C., R D. (2009a): Characteri-
zation of resistance mechanisms to Uromyces pisi in pea.
Plant Breeding, 128: 665–670.
B E., S J.C., F-A M., R-
 D. (2009b): Identification of resistance to Uromyces
pisi (Pers.) Wint. in Pisum spp. germplasm. Field Crop
Research, 114: 198–203.
B E., S J.C., S A., R D. (2009c):
Differential response of pea (Pisum sativum) to rusts
incited by Uromyces viciae-fabae and U. pisi. Crop Pro-
tection, 28: 980–986.
B E., R D., T A.M. (2010a): Mapping
of quantitative trait loci controlling partial resistance
against rust incited by Uromyces pisi (Pers.) Wint. in
a Pisum fulvum L. intraspecific cross. Euphytica, 175:
151–159.
B E., S J.C., R D. (2010b): Induc-
tion of systemic acquired resistance in pea against rust
(Uromyces pisi) by exogenous application of biotic and
abiotic inducers. Journal of Phytopathology, 158: 30–34.
B E., P E., R D. (2010c): Benzothia-
diazole and BABA improve resistance to Uromyces pisi
(Pers.) Wint. in Pisum sativum L. with an enhancement of
enzymatic activities and total phenolic content. European
Journal of Plant Pathology, 128: 483–493.
B E., S Z., S J.C., R D., T
A.M. (2011): Phylogenetic analysis of Uromyces species
infecting grain and forage legumes by sequence analysis
of nuclear ribosomal Internal Transcribed Spacer region.
Journal of Phytopathology, 159: 137–145.
B E., M A., S J.C., R D. (2012a):
Clarification on rust species potentially infecting pea
(Pisum sativum L.) crop and host range of Uromyces pisi
(Pers.) Wint. Crop Protection, 37: 65–70.
B E., R D., C M.A. (2012b): Com-
parative proteomic analysis of BTH and BABA-induced re-
sistance in pea (Pisum sativum) toward infection with pea
rust (Uromyces pisi). Journal of Proteomics, 75: 5189–5205.
C B., C K., P C. (2003): Les pro-
téagineux: intérêt dans les systémes de production four-
ragers français et européens. Fourrages, 174: 163–182.
C R., S C.P., S B.D., S S.B.
(2006): Identification and characterization of slow rusting
components in pea (Pisum sativum L.). Genetic Resources
and Crop Evolution, 53: 219–224.
C G.B. (1978): Rust Fungi on Legumes and Com-
posites in North America. University of Arizona Press,
Tucson, 351–353.
E A.A., S J.C., N R.E., R D. (2005):
Infection structures of host-specialized isolates of Uro-
myces viciae-fabae and of others Uromyces infecting
leguminous crops. Plant Disease, 89: 17–22.
E A.A., R B., S J.C., S Z., R-
 D. (2008): Genetic variation among and within
Uromyces species infecting legumes. Journal of Phyto-
pathology, 156: 419–424.
E A.A., S J.C., F-A M.,
R D. (2011): Chemical control of faba bean rust
(Uromyces viciae-fabae). Crop Protection, 30: 907–912.
EPPO (2012): Standards Pea. Available at http://archives.
eppo.org/EPPOStandards/PP2_GPP/pp2-14-e.doc (ac-
cessed December 13, 2012).
F D.F., R A.Y., P M.E. (2008): Fungal data-
bases. Available at http://nt.ars-grin.gov/fungaldatabases.
Systematic Mycology and Microbiology Laboratory, ARS,
USDA.
F-A M., B E., M F., R-
 D. (2011): Identification and characterisation of
resistance against rust (Puccini a allii) in garlic (Alliumsp.)
germplasm. Annals of Applied Biology, 159: 93–98.
142
Czech J. Genet. Plant Breed., 50, 2014 (2): 135–143 Review
H I.H.M.H.B., S F.L., M D.R.
(2001): Evaluating faba beans for rust resistance using
detached leaves. Euphytica, 117: 47–57.
I M., F F. (2003): Benzothiadiazole (BTH) induces
cell-death independent resistance in Phaseolus vulgaris
against Uromyces appendiculatus. Journal of Phytopa-
thology, 151: 171–180.
J S., P P., I H. (2008): Ultrastructural study on
Acibenzolar-S-methyl-induced scab resistance in epider-
mal pectin layers of Japanese pear leaves. Phytopathology,
98: 585–591.
K R.P., R R.S. (1987): Genetics of rust resistance
in pea. Indian Journal of Genetics and Plant Breeding,
47: 46–48.
K T.B.A., R K.T., R K. (1994): Assess-
ment of tall field pea genotypes for slow rusting resist-
ance. Legume Research, 17: 79–82.
K C., C R., S C. (2006): Role
of aeciospores in outbreaks of pea (Pisum sativum) rust
(Uromyces fabae). European Journal of Plant Pathology,
115: 323–330.
M E., R D., M A., M M.T., M-
 T., G J., R J. (2008): Mechanism and molecular
markers associated with rust resistance in a chickpea
interspecific cross (Cicer arietinum × Cicer reticulatum).
European Journal of Plant Pathology, 121: 43–53.
M K. (1978): Attachment of bean rust cell wall
material to host and non-host plant tissue. Archives of
Microbiology, 119: 113–117.
N R.E. (1986): Failure of haustorial development as a
factor in slow growth and development of Puccinia hordei
in partially resistant barley seedlings. Physiological and
Molecular Plant Pathology, 28: 309–322.
N R.E., R D. (2002): Potentially durable resist-
ance mechanisms in plant to specialized fungal patho-
gens. Euphytica, 124: 201–216.
P A.B., B H.S., S H.S., R R.D. (1979):
Studies on inheritance to rust (Uromyces fabae (Pers) de
Barry) on peas. SABRAO Journal, 11: 101–103.
P A.B., B H.S., R R.D.,U B.A.
(1980): Field resistance of pea germplasm to powdery
mildew (Erysiphe polygoni) and rust (Uromyces fabae).
Plant Disease, 64: 1085–1086.
P J.E. (1983): Models explaining the specificity
and durability of host resistance derived from the obser-
vations on the barley-Puccinia hordei system. In: L-
 F., W J.M., V G N.A. (eds.): Durable
Resistance in Crops. Plenum Press, New York, 57–80.
P J.E., V O A. (1975): Partial resist-
ance of barley rust, Puccinia hordei. II. Relationship
between field trials, microplot tests and latent period.
Euphytica, 24: 293–303.
P M., R B. (2000): Pollinator-mediated interac-
tions between a pathogenic fungus, Uromyces pisi (Puc-
ciniaceae), and its host plant, Euphorbia cyparrissias
(Euphorbiaceae). American Journal of Botany, 87: 48–55.
P P.E. (1952): Etude physiologique du parasitisme de
l’Uromyces pisi (Pers.) de By., sur l’Euphorbia cyparissias
L. Experientia, 9: 300–302.
P E., R D., J J. (2002): Acibenzolar-S-
methyl-induced resistance to sunflower rust (Puccinia
helianthi) is associated with an enhancement of cou-
marins on foliar surface. Physiological and Molecular
Plant Pathology, 60: 155–162.
P E., L M.J., J J., R D. (2007a):
Constitutive coumarin accumulation on sunflower leaf
surface prevents rust germ tube growth and appressorium
differentiation. Crop Science, 47: 1119–1124.
P E., M F., R-M M.M., R
D. (2007b): Differential effects of phenylalanine ammonia
lyase, cinnamyl alcohol dehydrogenase, and energetic
metabolism inhibition on resistance of appropriate host
and nonhost cereal–rust interactions. Phytopathology,
97: 1578–1583.
R R., S A.K., S B.D., J A.K., C R.,
S C.P. (2011): Molecular mapping for resistan-
ce to pea rust caused by Uromyces fabae (Pers.) de-Bary.
Theoretical and Applied Genetics, 123: 803–813.
R-M M.M., R D., P E., S J.C.
(2007): Effects of phenylpropanoid and energetic metabo-
lism inhibition on Faba bean resistance mechanisms to
rust. Phytopathology, 97: 60–65.
R D., N R.E. (1995): Characterization of Lr34,
a major gene conferring nonhypersensitive resistance to
wheat leaf rust. Plant Disease, 79: 1208–1212.
R D., N R.E. (1996): e pre-appressorial avoid-
ance mechanism to rust fungi in Hordeum chilense geno-
types. Physiological and Molecular Plant Pathology, 49:
89–101.
R D., S J.C. (2003): Uromyces viciae-fabae
haustorium formation in susceptible and resistant faba
bean lines. European Journal of Plant Pathology, 109:
71–73.
R D., M A. (2004): Prehaustorial resistance
against alfalfa rust (Uromyces striatus) in Medicago
truncatula. European Journal of Plant Pathology, 110:
239–243.
R D., A M.J., D C., B J.
(2011a): Pea (Pisum sativum L.). In: P   V
M., T A.M., C J.I., K C. (eds): Genetics,
Genomics and Breeding of Cool Season Grain Legumes.
Science Publishers, Enfiled, New Hampshire, 1–49.
R D., C M.A., M E., B E.,
R N. (2011b): Legume breeding for rust resistance:
143
Review Czech J. Genet. Plant Breed., 50, 2014 (2): 135–143
lessons to learn from the modelMedicago truncatula.
Euphytica, 180: 89–98.
R D., S J.C., E A.A. (2013): Response of
vetches (Vicia spp.) to specialized forms of Uromyces vicia-
fabae and to Uromyces pisi. Crop Protection, 46: 38–43.
S M.J.Y., S J.C., R D. (2006): Identifi-
cation of resistance against a new pathotype of Puccinia
hordei with virulence for the resistance gene Rph7. Eu-
ropean Journal Plant Pathology, 115: 309–321.
S J.C., R D. (2002): Histological characteriza-
tion of resistance to Uromyces viciae-fabae in faba bean.
Phytopathology, 92: 294–299.
S J.C., M M.T., R D. (2000): Char-
acterization of new sources of resistance to Uromyces
viciae-fabae in a germplasm collection of Vicia faba.
Plant Pathology, 49: 389–395.
S J.C., F S., D J., V P
M.C., W T.D., T J., R D. (2006):
Screening techniques and sources of resistance to rusts
and mildews in grain legumes. Euphytica, 147: 255–272.
S J.C., M-A I., R D. (2012): Identi-
fication and characterization of resistance to rust (Uromy-
ces ciceris-arietini (Grognot) Jacz. & Boyd) in a germplasm
collection of Cicer spp. Euphytica, 188: 229–238.
S R.M., S C.P. (1985): Evaluation, classifi-
cation and usefulness of pea germplasm for quantitative
characters. Legume Research, 8: 68–73.
S R.A., D R.K., C R.G. (2004): Influence of
spray time of mancozeb on pea rust caused by Uromyces
viciae-fabae. Indian Journal of Agricultural Sciences,
74: 502–504.
S P., A G., B J., C C.J., E
N.T.H., F A.J., F R., H M., M J.,
N P., MP K.E., R R.J., R
D., W J.L., W T.D. (2012): Pea (Pisum
sativum L.) in the genomic era. Agronomy, 2: 74–115.
S H.S., S S.S., R R.D. (1974): Varietal reac-
tion of peas to powdery mildew (Erysiphe polygoni) and
rust (Uromyces fabae). Mysore Journal of Agriculture and
Science, 8: 529–532.
S E.C., S D.M., L W.Q. (1962):
Identification of Physiologic Races of Puccinia graminis
var. tritici. USDA, Agricultural Research Service. E617.
Washington.
S G.D., MV M.A. (1987): Partial resistance to
Uromyces appendiculatus in dry edible beans. Phytopa-
thology, 77: 1101–1103.
T R., R H.J. (1990): Resistance of wheat to
Puccinia g raminis f. sp. tritici association of the hypersen-
sitive reaction with the cellular accumulation of lignin-
like material and callose. Physiological and Molecular
Plant Pathology, 36: 109–120.
V L L.C. (2001): Systemic induced resistance. In:
S A.J., F R.S.S., V L L.C. (eds):
Mechanisms of Resistance to Plant Diseases. Kluwer
Academic Publishers, Dordrecht, 521–574.
V P M.C., R D. (2009a): Identification and
characterization of partial resistance to rust in a germ-
plasm collection of Lathyrus sativus L. Plant Breeding,
128: 495–500.
V P M.C., F-A M., M A.,
R D. (2009b): Pre and posthaustorial resistance
to rusts in Lathyrus cicera L. Euphytica, 165: 27–34.
V S., Y K., K C., S S.B.,
S C.P., C R., S B.D. (2005): Identi-
fication of RAPD markers linked to the rust (Uromyces
fabae) resistance gene in pea (Pisum sativum). Euphytica,
144: 265–274.
W W.K. (1976): Appressorial formation over stomata
by bean rust: Response to a surface contact stimulus.
Phytopathology, 66: 136–146.
X A.G., W T.D. (2001): Reaction of field pea
varieties to three isolates of Uromyces fabae. Plant Sci-
ence, 82: 253–255.
Receieved for publication June 16, 2013
Accepted after corrections November 27, 2013
Corresponding author:
Dr. E B, Institute for Sustainable Agriculture, Spanish National Research Council (CSIC),
Apdo. 4084, E-14080 Córdoba, Spain; e-mail: ebarilli@ias.csic.es
... Similar observations on effects of pea rust (U. fabae) on pea were studied very earlier by Thatcher (1939) which revealed that this rust pathogen causes the secretion of some metabolites from infected host cells. This aspect on effects of pea rust on pea crops were investigated by Barilli et al. (2009); Barilli et al. (2014); Singh et al. (2014) and Osuna-Caballero et al. (2022) where they highlighted the effects of U. fabae on growth characteristics of this crop. The increased permeability of infected cells, synthesis of proteins and change in protein and several enzymes in susceptible plants was observed in bean leaves infected with U. fabae (Staples and Stahmann, 1964;Staples, 1968;Hahn et al., 1997;Singh et al., 2012;Barilli et al., 2014;More et al., 2020). ...
... This aspect on effects of pea rust on pea crops were investigated by Barilli et al. (2009); Barilli et al. (2014); Singh et al. (2014) and Osuna-Caballero et al. (2022) where they highlighted the effects of U. fabae on growth characteristics of this crop. The increased permeability of infected cells, synthesis of proteins and change in protein and several enzymes in susceptible plants was observed in bean leaves infected with U. fabae (Staples and Stahmann, 1964;Staples, 1968;Hahn et al., 1997;Singh et al., 2012;Barilli et al., 2014;More et al., 2020). Because of such harmful effects, it becomes necessary to use suitable preventive and curative control measures to avoid heavy losses in final yield. ...
Article
Full-text available
Pea is third most important pulse crop of the world which is being cultivated all over the globe over the land area of two million hectares. Despite of its being grown in large area, this crop is infected by numerous pathogens including rust disease. This rust is disease of pea is caused by Uromyces viciae fabae affect the pea crop all over the mid-hill conditions of Himachal Pradesh. Therefore, the present study was conducted in mid-hill regions lies in District Mandi of Himachal Pradesh out to know the epidemiology of rust disease on pea (Pisum sativum). A survey of total thirteen study sites was carried out and effects on different plant characteristics like plant height, number of leaves, pods (number of pods and seeds per pod), leaf length and length of pods was evaluated. Results revealed that rust disease on pea crop was observed from seven study areas. Disease symptoms appeared as rust sori of aecia, uredia and telia which poses severe infection on entire plant. Variable degrees of disease severity and incidence of pea rust was observed in different study areas where infection was observed. An increase in disease severity and incidence was observed with the growth of pea crop. The disease severity (DS) was found in the range of 1.4-46.3% whereas, diseases incidence (DI) was observed in the range of 3.3-47.5%. Analysis of results revealed that infected plants showed significant decline in plant height, number of leaves, pods (number of pods and seeds per pod) and leaf length as compare to healthy plants. The plant height of infected plants was observed in the range of 17.8-16.3cm, whereas, number of leaves, pods (number of pods and seeds per pod) and leaf length were observed in the range of 87-65.6, 16-14, 11-7 and 4-3cm respectively. However, no significant difference was recorded in length of pods in infected and healthy plants. It is necessary to use suitable preventive and curative control measures to avoid heavy losses in final yield. Besides the use of chemical pesticides, the use of mycorrhizal fungi now days is proving beneficial to enhance overall growth performance of the plants for sustainable agricultural production.
... As for the majority of rust pathogens, germ tube development must be directed towards a stomata entrance, in which an appressorium will be formed and penetrate the stomata complex. Once inside the substomatal cavity, the pathogen will develop a substomatal vesicle (SSV), from which a hyphae emerges and attempt to penetrate the mesophyll cells [16]. Consequently, plants will perceive the physical and chemical pressure imposed on the cuticle and cell-wall and respond with inducible pre-penetration defense responses. ...
... Susceptibility (S) genes encode for plant proteins that are targeted by pathogens to facilitate host colonization. As described before, often the released effectors by the adapted pathogen target key components of the plant's immune system, in an attempt to subvert the onset of further defense responses [16,100]. However, effectors released can also interact and activate specific plant components, encoded by S genes, not necessarily involved with the plant's immune system, that function as negative regulators of plant immunity by activating or stabilizing S genes and/or their products [127]. ...
Article
Full-text available
Legume species are recognized for their nutritional benefits and contribution to the sustainability of agricultural systems. However, their production is threatened by biotic constraints with devastating impacts on crop yield. A deep understanding of the molecular and genetic architecture of resistance sources culminating in immunity is critical to assist new biotechnological approaches for plant protection. In this review, the current knowledge regarding the major plant immune system components of grain and forage legumes challenged with obligate airborne biotrophic fungi will be comprehensively evaluated and discussed while identifying future directions of research. To achieve this, we will address the multi-layered defense strategies deployed by legume crops at the biochemical, molecular, and physiological levels, leading to rapid pathogen recognition and carrying the necessary information to sub-cellular components, on-setting a dynamic and organized defense. Emphasis will be given to recent approaches such as the identification of critical components of host decentralized immune response negatively regulated by pathogens while targeting the loss-of-function of susceptibility genes. We conclude that advances in gene expression analysis in both host and pathogen, protocols for effectoromics pipelines, and high-throughput disease phenomics platforms are rapidly leading to a deeper understanding of the intricate host-pathogen interaction, crucial for efficient disease resistance breeding initiatives.
... In warm and humid areas, the main causative pathogen is Uromyces viciae-fabae, while U. pisi is responsible for pea rust in more temperate regions (Singh et al. 2023). Complete resistance to rust in peas has not yet been identified, with partial resistance being the primary source of genetic resistance available so far to control this disease in pea (Barilli et al. 2014). In this study, we applied a GWAS approach to identify regions of the pea genome associated with traits linked to the partial resistance response. ...
Preprint
Pea is an important temperate legume crop providing plant-based proteins for food and feed worldwide. Pea yield can be limited by a number of biotic stresses, among which, rust represents a major limiting factor. Some efforts have been made to assess the natural variation in pea resistance, but its efficient exploitation in breeding is limited since the resistance loci identified so far are scarce and their responsible gene(s) unknown. To overcome this knowledge gap, a comprehensive Genome-Wide Association Study (GWAS) on pea rust, caused by Uromyces pisi , has been performed to uncover genetic loci associated with resistance. Utilizing a diverse collection of 320 pea accessions, we evaluated phenotypic responses to two rust isolates using both traditional methods and advanced image-based phenotyping. We detected 95 significant trait-marker associations using a set of 26,045 DArT-seq polymorphic markers. Our in-silico analysis identified 62 candidate genes putatively involved in rust resistance, grouped into different functional categories such as gene expression regulation, vesicle trafficking, cell wall biosynthesis, and hormonal signalling. This research highlights the potential of GWAS to identify resistance sources, molecular markers associated with resistance and candidate genes against pea rust, offering new targets for precision breeding. By integrating our findings with current breeding programs, we can facilitate the development of pea varieties with improved resistance to rust, contributing to sustainable agricultural practices and food security. This study sets the stage for future functional genomic analyses and the application of genomic selection approaches to enhance disease resistance in peas. Key message Candidate genes and metabolic pathways controlling resistance to rust disease in pea have been proposed through GWAS using 26,045 DArTseq polymorphic markers and phenotypic data from field and controlled conditions.
... The fungal class Pucciniomycetes (formerly known as Urediniomycetes) of the Basidiomycota phyla contains most plant pathogens that cause fungal rust (Swann et al. 2001). In this study, we identified the presence of two rust fungi, namely the wheat leaf rust fungi P. recondita and faba-beans rust fungi Uromyces viciae-fabae (Barilli et al. 2014) (belonging to the fungal class Pucciniomycetes) in the bioaerosol samples. Hence, it was evident that the wheat field in the study region was susceptible to brown leaf rust infection. ...
Article
Full-text available
This study proposes the relationship between fungal bioaerosols and biotic stress on crops using a case study on wheat leaf rust reported from northern India. We sampled and quantified the size-resolved fungal bioaerosols using the next-generation sequencing technique from a wheat crop field during winter. Puccinia recondita, the fungal pathogen that causes wheat leaf rust, was identified during the study period. The pathogen is known for its frequent and widespread occurrence of new variants that causes disease-resistant crop varieties susceptible to infections. This reveals the need for frequent and systematic monitoring to prevent rust infection. In the current study, the size-resolved fungal bioaerosol characterization was linked to the dispersal properties of the fungal propagules, and using a theoretical dispersion model, originating source and the areas of high risk for wheat leaf rust infection were identified. Our findings may serve as a vital reference for crop pathologists, agro technologists, environmentalists, and policymakers to expand the investigation on the biotic stress caused by the invasion of fungal bioaerosols on various crops and to implement preventive measures to ensure global food security.
... Despite being widely used, visual DS estimations can be imprecise and biased for diseases with small and numerous lesions like rust [25]. Therefore, researchers usually also analyse IF and/or PS that are less prone to user bias to quantify more precisely partial resistance in pea [71]. Some previous studies reported the estimation of some of these disease components through RGB image analysis with variable efficiency [38,62,72,73]. ...
Article
Full-text available
Background Rust is a damaging disease affecting vital crops, including pea, and identifying highly resistant genotypes remains a challenge. Accurate measurement of infection levels in large germplasm collections is crucial for finding new resistance sources. Current evaluation methods rely on visual estimation of disease severity and infection type under field or controlled conditions. While they identify some resistance sources, they are error-prone and time-consuming. An image analysis system proves useful, providing an easy-to-use and affordable way to quickly count and measure rust-induced pustules on pea samples. This study aimed to develop an automated image analysis pipeline for accurately calculating rust disease progression parameters under controlled conditions, ensuring reliable data collection. Results A highly efficient and automatic image-based method for assessing rust disease in pea leaves was developed using R. The method’s optimization and validation involved testing different segmentation indices and image resolutions on 600 pea leaflets with rust symptoms. The approach allows automatic estimation of parameters like pustule number, pustule size, leaf area, and percentage of pustule coverage. It reconstructs time series data for each leaf and integrates daily estimates into disease progression parameters, including latency period and area under the disease progression curve. Significant variation in disease responses was observed between genotypes using both visual ratings and image-based analysis. Among assessed segmentation indices, the Normalized Green Red Difference Index (NGRDI) proved fastest, analysing 600 leaflets at 60% resolution in 62 s with parallel processing. Lin’s concordance correlation coefficient between image-based and visual pustule counting showed over 0.98 accuracy at full resolution. While lower resolution slightly reduced accuracy, differences were statistically insignificant for most disease progression parameters, significantly reducing processing time and storage space. NGRDI was optimal at all time points, providing highly accurate estimations with minimal accumulated error. Conclusions A new image-based method for monitoring pea rust disease in detached leaves, using RGB spectral indices segmentation and pixel value thresholding, improves resolution and precision. It rapidly analyses hundreds of images with accuracy comparable to visual methods and higher than other image-based approaches. This method evaluates rust progression in pea, eliminating rater-induced errors from traditional methods. Implementing this approach to evaluate large germplasm collections will improve our understanding of plant-pathogen interactions and aid future breeding for novel pea cultivars with increased rust resistance.
... The fungal class Pucciniomycetes (formerly known as Urediniomycetes) of the Basidiomycota phyla contains most plant pathogens that cause fungal rust (Swann et al. 2001). In this study, we found the presence of the wheat leaf rust fungi Puccinia recondita and faba-beans rust fungi Uromyces viciae-fabae (Barilli et al. 2014) (belonging to the fungal class Pucciniomycete) in the bioaerosol samples. Hence, it was evident that the wheat eld in the study region was susceptible to brown leaf rust infection. ...
Preprint
Full-text available
This study proposes the relationship between fungal bioaerosols and biotic stress on crops using a case study on wheat leaf rust reported from northern India. We sampled and quantified the size-resolved fungal bioaerosols using the Next-Generation Sequencing technique from a wheat crop field during winter. Puccinia recondita , the fungal pathogen that causes wheat leaf rust, was identified during the study period. The pathogen is known for its frequent and widespread occurrence of new variants that causes disease-resistant crop varieties susceptible to infections. This reveals the need for frequent and systematic monitoring to prevent rust infection. In the current study, the size-resolved fungal bioaerosol characterisation was linked to the dispersal properties of the fungal propagules, and using a theoretical dispersion model, originating source and the areas of high risk for wheat leaf rust infection were identified. Our findings may serve as a vital reference for crop pathologists, agro technologists, environmentalists, and policymakers to expand the investigation on the biotic stress caused by the invasion of fungal bioaerosols on various crops and to implement preventive measures to ensure global food security.
... Infecting plants produce pseudo flowers, similar to true flowers in colour and shape and also leaves at the top of stem appear in rosette pattern (PFUNDER and ROY, 2000). Many authors have described rust symptoms on pea (BARILLI et al., 2009;BARILLI et al., 2014;KUSHWAHA et al., 2006;KUSHWAHA et al., 2010;CHAND et al., 2006;XUE et al., 2002). In pea plant, early rust symptoms develop on abaxial side of older leaves and form round to oval aecidia. ...
Article
Full-text available
Pea is a self-pollinating, cool season leguminous crop with a diploid chromosome number of 14. Pea is cultivated extensively and because of high protein content, pea is a crop with great significance. However, cultivation of pea gets affected by numerous biotic and abiotic stresses. Fungal diseases such as rust, powdery mildew, fusarium wilt etc. comes under the biotic stresses which are most widespread. Rust and powdery mildew cause major damage to the crop in both tropical and temperate locales of the world. Use of fungicide to control plant diseases is a good approach but excessive use of fungicide can cause environmental pollution and disasters throughout the world and can also built resistance in the pathogens. Therefore, to remove these constraints, disease resistant varieties must be used. Use of resistant varieties is a safe and efficient alternative method to control plant diseases. Breeding for rust and powdery mildew resistance has been started globally and a number of resistant sources have been identified. To introgress resistant gene into commercial varieties of pea, molecular tools must be integrated with conventional breeding techniques. Till date only one linkage map has been generated for rust resistance in pea; while for powdery mildew, three genes have been mapped. Molecular markers linked to these genes can be used in breeding programs of resistance varieties. To improve the efficiency of selection for rust and powdery mildew resistance and enhance varietal development, the integrated approach of genomic resources, effective molecular tools and high resolution phenotyping tools must be used. An overview of pea rust and powdery mildew, pathogen structure, yield losses and breeding techniques implied to control these diseases, is provided in this review article.
Article
Full-text available
Pea rust is a major disease worldwide caused by Uromyces pisi in temperate climates. Only moderate levels of partial resistance against U. pisi have been identified so far in pea, urging for enlarging the levels of resistance available for breeding. Herein, we describe the responses to U. pisi of 320 Pisum spp. accessions, including cultivated pea and wild relatives, both under field and controlled conditions. Large variations for U. pisi infection response for most traits were observed between pea accessions under both field and controlled conditions, allowing the detection of genotypes with partial resistance. Simultaneous multi-trait indexes were applied to the datasets allowing the identification of partial resistance, particularly in accessions JI224, BGE004710, JI198, JI199, CGN10205, and CGN10206. Macroscopic observations were complemented with histological observations on the nine most resistant accessions and compared with three intermediates and three susceptible ones. This study confirmed that the reduced infection of resistant accessions was associated with smaller rust colonies due to a reduction in the number of haustoria and hyphal tips per colony. Additionally, a late acting hypersensitive response was identified for the first time in a pea accession (PI273209). These findings demonstrate that screening pea collections continues to be a necessary method in the search for complete resistance against U. pisi. In addition, the large phenotypic diversity contained in the studied collection will be useful for further association analysis and breeding perspectives.
Chapter
Pea (Pisum sativum L.) is an annual pulse crop which is eaten fresh and dried form around the world. It is widely accepted as a culinary best due to its protein rich nature. Pea crop is devastated due to various abiotic and biotic factors, which sometimes leads to complete crop loss worldwide. Biotic stresses in pea are mainly characterized by pathogens like virus, fungus, bacteria, insect pests, and nematodes. Infestation of insect pests not only damages the pea crop but also acts as vectors to spread viruses. These pathogens cause severe productivity loss if proper control measures and integrated disease management (IDM) strategies are not implemented. Various measures like cultural, chemical and biocontrol methods help reduce the crop damage. Severe damage by these pathogens leads to more than 80% crop loss in pea. Utilization of the available genetic resource for resistant sources from the Pisum genera will make the introgression of novel traits to develop disease resistant lines. It mainly includes primary, secondary, and tertiary gene pool sources which could be included for developing lines resistant to various biotic stresses. Classical genetics and conventional breeding techniques have doubled the pea productivity during the last six decades. Various molecular markers like SSR, STMS and SNP have been developed in pea for various biotic stresses which have led to marker assisted breeding. QTLs for various fungal, bacterial and insect resistance have been detected though mapping studies in pea. Whole genome sequencing of pea has been accomplished and this has opened a plethora of opportunities to carry out genomics-assisted breeding for developing resistant varieties against various pests and diseases in pea. Functional genomics techniques by reverse genetics approach like TILLING by sequencing (TbyS) has increased the relevance of development of non-GMO by utilizing conventional mutation breeding techniques along with next generation sequencing (NGS) technologies for obtaining variability in pea germplasm. Development of transgenics has been done in pea by Agrobacterium mediated transformation techniques for insect and fungal resistance. Gene editing techniques with CRISPR-Cas9 has been used in pea for precisely editing genes of importance for developing resistant lines for various biotic stresses. Bioinformatics tools with the development of various databases have increased the knowledge of genomics, proteomics and metabolomics in pea for biotic stresses. With the advent of modern tools like gene editing the conservation of wild type and landraces has raised concern with regulatory framework drafted in different countries. A combined effort from the conventional breeding with utilizing the modern biotech tools along with nanotechnology and speed breeding will help molecular breeders to design climate resilient pea varieties with resistance to biotic stress.KeywordsBiotic stressPisum sativum L.FungusVirusInsectsNematodesMolecular breedingResistance genesQTL
Article
Full-text available
Growth and yield of pea crops are severely affected by various fungal diseases, including root rot, Ascochyta blight, powdery mildew, and rust, in different parts of the world. Conventional breeding methods have led to enhancement of host plant resistance against these diseases in adapted cultivars, which is the primary option to minimize the yield losses. To support the breeding programs for marker-assisted selection, several successful attempts have been made to detect the genetic loci associated with disease resistance, based on SSR and SNP markers. In recent years, advances in next-generation sequencing platforms, and resulting improvements in high-throughput and economical genotyping methods, have been used to make rapid progress in identification of these loci. The first reference genome sequence of pea was published in 2019 and provides insights on the distribution and architecture of gene families associated with disease resistance. Furthermore, the genome sequence is a resource for anchoring genetic linkage maps, markers identified in multiple studies, identification of candidate genes, and functional genomics studies. The available pea genomic resources and the potential application of genomic technologies for development of disease-resistant cultivars with improved agronomic profile will be discussed, along with the current status of the arising improved pea germplasm.
Article
Full-text available
Crown rust (Puccinia coronata f. sp. avenae) is the main disease in the oat crop (Avena sativa L.) and the use of resistant cultivars is the most important control method. This study had as objective to determine the genetic control of resistance to crown rust in oat and to identify different gene sources for resistance to this disease. Three resistant genotypes (UFRGS 15, UFRGS 881920 and UFRGS 86A1194-2), three susceptible genotypes (UFRGS 7, UFRGS 8 and UFRGS 14) and the F 3 progenies derived from crosses between these genotypes were used. The plants were evaluated individually with regard to the presence or absence of crown rust symptoms, and the data from these evaluations were used to perform a genetic analysis in which the hypothesis of one or two resistance genes were tested by the chi-square test. Results showed one dominant resistance gene in UFRGS 881920 and two complementary resistance genes in UFRGS 15, when they were crossed with the susceptible genotypes. The genetic analysis performed did not allow to determine whether these two genotypes are or are not the same source of resistance.
Article
Full-text available
A collection consisting of 140 accessions of chickpea (Cicer arietinum L.) and 109 accessions of related wild species (Cicer spp.) was screened for resistance to chickpea rust (Uromyces ciceris-arietini (Grognot) Jacz. & Boyd). Varying levels of partial resistance were identified, based on a reduced disease severity and area under disease progress curve without any macroscopically visible host cell necrosis. Higher levels of resistance were observed in wild Cicer species, but neither associated with hypersensitivity. Components of resistance have been macros- and microscopically studied in selected C. arietinum accessions. Resistance was expressed as longer latent period and lower infection frequency, which were associated with increased percentage of early aborted colonies, reduced number of haustorial mother cells and haustoria per colony, and reduced colony size.
Book
Plant-pathogen interactions is a rapidly developing area among the plant sciences. Molecular genetics has provided the tools to analyse and manipulate mechanisms of pathogenicity and resistance responses and has facilitated their study from the population to the molecular level. The book brings together the views of experts in the field and provides an overview of the genetic basis of interactions between fungi, bacteria, viruses and their host plants, the triggering of plant defences and the complex array of plant responses to stop pathogen invasion, as well as possible applications for improved plant protection. The chapters are organised and written to make an advanced textbook rather than simply a collection of reviews or something resembling conference proceedings. Thus, authors have largely concentrated on a didactic approach and the book should remain useable for several years in spite of the rapid progress in research. The text is aimed at advanced students in the field of plant pathology as well as researchers requiring an integrated picture of plant resistance to pathogens.
Article
A study carried out to find out the influence of time of mancozeb sprays on rust of pea (Pisum sativum L.) incited by Uromyces viciae-fabae (Pers.) Schroet. revealed that 4 sprays (0.2%) at 10-day intervals commencing with initiation of the disease were most effective in reducing rust severity from 69.7% to 10.2% and increasing seed yield from 1 108.3 kg to 1 824.9 kg/ha. This was followed by 3 timely sprays with 24.1% disease severity and 1 683.3 kg/ha seed yield. However, under 2 timely sprays applied at inception of disease and subsequent 10 days later, the net profit was Rs 4 720/ha with benefit : cost ratio of 6.05 and appeared feasible for resource poor farmers. One timely spray provided just after disease appearance gave benefit : cost ratio of 4.77 with net profit of Rs 1 860 /ha. Spray schedule started immediately after the rust appearance was more effective and beneficial than sprays applied 10 days after disease appearance.
Article
Reactions of 93 field pea varieties to three isolates of Uromyces fabae (Pers.) de Bary (Uf-1, Uf-2, and Uf-3) were measured as leaf area with symptoms (LAS) under controlled environmental conditions. Significant differences (P < 0.05) were observed from pea varieties and rust isolates, and variety x isolate interaction. Of these varieties, Tara and Century were most resistant (LAS <2%) to both Uf-1 and Uf-3 isolates; Victoria and Topper were most resistant to Uf-2 only; and Titan, Tipu, Emerald, and Yellowhead were most resistant to Uf-3 only. The remaining varieties had LAS of 2-67% for Uf-1 2-86% for Uf-2 and 2-45% for Uf-3, and were considered susceptible to the respective isolates. Over the average of 93 varieties, Uf-3 had LAS of 8.6% and was considered a less virulent isolate compared to Uf-1 (16.2%) and Uf-2 (15.2%). It is suggested that several different pathogenic isolates are required to test pea lines for rust resistance. A growth room inoculation and assessment method was developed in this study and can be used for evaluating pea lines for susceptibility to U. fabae.
Article
Article
The genus Vicia includes many species of agricultural interest, such as faba bean and the various vetches that may be infected by rust, with little understanding of the specificity of these interactions. This work contributes to the clarification of host range of Uromyces viciae-fabae and Uromyces pisi, and confirms host specialization within U. viciae-fabae. The differential response of Vicia faba, Vicia sativa and Lens culinaris checks confirms the existence of specialized isolates of U. viciae-fabae. Host range of these host specialized forms of U. viciae-fabae was not so clear cut when we test other species of Vicia. The most specialized form was U. viciae-fabae ex V. faba that was able to infect profusely only faba bean (V. faba), all other Vicia species being highly resistant. Conversely, susceptibility against U. viciae-fabae ex V. sativa was very common in Vicia spp., particularly in those belonging to the subgenus Vicia, although not in V. faba. Still, susceptibility could be identified in a number of accessions of section Cracca such as Vicia cracca, Vicia monantha, Vicia sicula or Vicia villosa. Most Vicia accessions were highly resistant to U. viciae-fabae ex L. culinaris, but a number of accessions could be severely rusted, particularly in species of the subgenus Vicilla but also in some of section Peregrinae of subgenus Vicia. Similarly, most Vicia accessions were highly resistant to U. pisi but a number of accessions could be severely rusted, particularly in species of the subgenus Vicilla and in sections Hypechusa and Peregrinae of subgenus Vicia. This work also identified sources of resistance to the various rusts that can be used in rust resistance breeding. In spite of the susceptibility against various rusts, interesting levels of resistance were identified in crops and related species being based either on hypersensitive response or on reduced severity in spite of a compatible interaction making resistance breeding feasible.