ArticlePDF Available

Two new Phragmidium species identified on Rosa plants native to China

Authors:

Abstract and Figures

Two new Phragmidium species, Phragmidium zhouquensis and Ph. longissima, were identified on two native plants, Rosa omeiensis and R. lichiangensis respectively, during an investigation of the occurrence of rust fungi in western China. Phragmidium zhouquensis is mainly characterized by 3–9-celled teliospores bearing minute verrucae on the surface. Phragmidium longissima differs from other Phragmidium species in that it possesses echinulate urediniospores with a pore membrane at the germ pore. Phylogenetic analyses based on 28S rRNA partial gene sequences revealed that specimens of Ph. zhouquensis and Ph. longissima formed two distinct lineages. Phragmidium longissima is the first Phragmidium species to be identified on R. lichiangensis.
Content may be subject to copyright.
Phytotaxa 217 (2): 182–190
www.mapress.com/phytotaxa/
Copyright © 2015 Magnolia Press Article PHYTOTAXA
ISSN 1179-3155 (print edition)
ISSN 1179-3163 (online edition)
182 Accepted by Samantha Karunarathna: 3 Jun. 2015; published: 23 Jun. 2015
http://dx.doi.org/10.11646/phytotaxa.217.2.8
Licensed under a Creative Commons Attribution License http://creativecommons.org/licenses/by/3.0
Two new Phragmidium species identified on Rosa plants native to China
TING YANG 1, WEI CHANG 1, BIN CAO 1, CHENG-MING TIAN 1, LONG ZHAO 2 & YING-MEI LIANG 3*
1 The Forestry Institute, Beijing Forestry University, Beijing 100083, China
2 Gansu Natural Forest Protection Center, Gansu 730000, China
3 Museum of Beijing Forestry University, Beijing 100083, China
* Correspondence author: liangym@bjfu.edu.cn
Abstract
Two new Phragmidium species, Phragmidium zhouquensis and Ph. longissima, were identified on two native plants, Rosa
omeiensis and R. lichiangensis respectively, during an investigation of the occurrence of rust fungi in western China. Phrag-
midium zhouquensis is mainly characterized by 3–9-celled teliospores bearing minute verrucae on the surface. Phragmidium
longissima differs from other Phragmidium species in that it possesses echinulate urediniospores with a pore membrane at
the germ pore. Phylogenetic analyses based on 28S rRNA partial gene sequences revealed that specimens of Ph. zhouquensis
and Ph. longissima formed two distinct lineages. Phragmidium longissima is the first Phragmidium species to be identified
on R. lichiangensis.
Key words: molecular phylogeny, Pucciniales, rose rusts, taxonomy
Introduction
The genus Rosa L. (Rosaceae) is of worldwide economic importance as the centre of a large ornamental shrub and cut
flower industry. Rosa species are widely distributed throughout the temperate and subtropical habitats of the northern
hemisphere (Matthews 1995). Rosa omeiensis Rolfe and R. lichiangensis T. T. Yu & T. C. Ku are two species native to
central and western China (Lu et al. 2003).
The genus
Phragmidium Link is a common rust fungus restricted to plants belonging to the family Rosaceae,
especially the genera Potentilla, Rosa and Rubus. Phragmidium is characterized by Caeoma-type aecia with catenulate
aeciospores, Uredo-type or Calodion-type uredinia with peripheral paraphyses and dark brown teliospores that are
typically festooned with several transverse septa along with 2–3 germ pores per teliospore cell (Cummins & Hiratsuka
2003, Yun et al. 2011). Most species within this genus produce subcuticular spermogonium, caeomatoid aecium,
uredinium and telium during the autoecious macrocyclic life cycle (Cummins & Hiratsuka 2003, Zhuang et al.
2012).
Approximately 60 to 65 species have been recognised as Phragmidium, and 30 of these have been reported to
infect wild Rosa species and ornamental Rosa cultivars (Cummins & Hiratsuka 2003). Wahyuno et al. (2001) described
seven Phragmidium species by analysing the morphological characteristics of a maximum of four spore stages from
ten previously recorded species. These authors determined that the length, width, degree of tapering toward both ends,
and apiculus length were sufficient to determine gross teliospore morphology, and these have been considered as
important taxonomic characters. The cell number, wall colour, surface rugosity, and hygroscopicity of the lower part
of the pedicel also have been used as taxonomic features at the telial stage. A total of 11 Phragmidium species have
been reported on Rosa in China, including Ph. butleri H. Sydow & P. Sydow, Ph. fusiforme J. Schröter, Ph. handelii
Petrak, Ph. hashiokai Hiratsuka f., Ph. kamtschatkae (F. W. Anderson) Arthur & Cummins, Ph. montivagum Arthur,
Ph. rosae-multiflorae Dietel., Ph. mucronatum (Persoon) Schlechtendal, Ph. robustum J. Y. Zhuang & S. X. Wei, Ph.
rosae-omeiensis S. X. Wei, and Ph. tuberculatum Jul. Müller. The latter four species have been described on Rosa
omeiensis (Tai 1979, Wei 1988, Hiratsuka et al. 1992, Cao & Li 1996, 1999, Zhuang & Wei 2003, Zhuang 2005,
Zhuang & Wang 2006, Zhuang et al. 2012, Xu 2013).
During an investigation of rust fungi in western China, two previously unknown Phragmidium species were
TWO NEW PHRAGMIDIUM SPECIES Phytotaxa 217 (2) © 2015 Magnolia Press 183
found on Rosa omeiensis and R. lichiangensis. Phylogenetic analyses were performed to confirm that the isolates were
distinct species. Consequently, they were illustrated and described as the two novel species Phragmidium zhouquensis
and Ph. longissima.
TABLE 1. Sequence data analyzed in this study or obtained from GenBank (new species in bold).
Fungal taxon Host plant Specimen no Locality and date of collection GenBank accession no.
28S
Phragmidium zhouquensis Y.M. Liang & T. Yang
Rosa omeiensis BJFC-R01516 Gansu, China, Aug. 20, 2014 KP407637
BJFC-R01529 Gansu, China, Aug. 20, 2014 KP407638
Ph. longissima Y.M. Liang & T. Yang
Rosa lichiangensis BJFC-R00338 Yunnan China, Sep. 18, 2011 KP407633
BJFC-R00360 Yunnan China, Sep. 19, 2011 KP407634
Ph. biloculare
Potentilla flabellifolia BPI881121 USA JF907670a
Ph. fragariae
Potentilla sterilis — — JF907670a
Ph. fusiforme
Rosa hugonis BJFC-R00942 Gansu China, July. 18, 2013 KP407632
Rosa pendulina — Switzerland AJ715522a
Ph. handelii
Rosa webbiana BJFC-R01030 — KP407631
BJFC-R01421 Gansu, China, Aug. 15, 2014 KP407628
BJFC-R01437 Gansu, China, Aug. 15, 2014 KP407629
BJFC-R01458 Gansu, China, Aug. 17, 2014 KP407630
Ph. ivesiae
Potentilla gracilis BPI877968 USA JF907673a
BPI863637 USA JF907672a
Ph. mexicanum
Potentilla hebiichigo BPI881108 South Korea JF907671a
P. indica BPI877884 USA JF907664a
Ph. montivagum
Rosa cf. woodsii FO47828 — AF426213a
Ph. mucronatum
Rosa corymbifera — Germany AJ715520a
R. rubiginosa — Germany AJ715521a
Ph. potentillae-canadensis
Potentilla canadensis BPI877885 USA JF907668a
Ph. rubi-idaei
Rubus idaeus — — AF426215a
Ph. sanguisorbae
Sanguisorba minor — — AF426216a
Ph. tormentillae
Potentilla simplex BPI877888 USA JF907669a
Ph. tuberculatum
Rosa rugosa BJFC-R00936 Gansu, China, July. 18, 2013 KP407635
BJFC-R00959 Qinghai, China, July. 22, 2013 KP407636
Rosa sp. BPI877980 USA KJ841922a
Rosa floribunda BPI877977 USA KJ841923a
Ph. violaceum
Rubus fruticosus — — AF426214a
Puccinia tanaceti
Artemisia brevifolia IBA5340 Japan AB190908ab
a stands for sequences from GenBank.
b stands for sequences used as outgroup.
YANG ET AL.
184 Phytotaxa 217 (2) © 2015 Magnolia Press
Materials and methods
Materials
Fresh specimens used in this study were collected in western China during 2011–2014 and deposited at the Mycological
Herbarium, Museum of Beijing Forestry University (BJFC), Beijing, China. This study also included dried specimens
on Rosa, which were loaned from the Herbarium Mycologicum Academiae Sinicae, Beijing (HMAS) (Tables 1 and
2).
TABLE 2. Comparison of telial characteristics of Phragmidium species on Rosa omeiensis in China used in this study (new species in bold).
Species
Telia Teliospores
Color Location on
hosts
Number of
cells
Size
(μm ×μm)
Papillae
(μm)
Length of
Pedicels
(μm)
Ph. zhouquensis dark brown hypophyllous (3–)6–8(–9) 67–103 × 32–39 3.5–6 80–160
Ph. mucronatum black hypophyllous (4–)6–8(–9) 55–104 × 29–36 5–17 62–184
Ph. robustum dark brown hypophyllous 3–7 50–106 × 35–45(–48) 2–8 75–190
Ph. rosae-omeiensis black stem (4–)7–9(–10) (67–)80–126 (–160) × 27–34 2–7(–10) up to 400
Ph. tuberculatum black hypophyllous (3–)4–6(–7) 52–101(–126) × 29–36 up to 20 up to 110
Microscopic analysis
For light microscopy (LM) observation, spores and leaf sections were mounted in a drop of lactophenol or lactophenol-
cotton blue. For each specimen, approximately 30 spores were randomly selected and measured using a LEICA DM2500
upright microscope (Leica, Germany). To prepare samples for surface structure examination using scanning electron
microscopy (SEM), urediniospores and leaf sections with uredinia were adhered onto aluminium stubs covered with
double-adhesive tape, coated with gold using the Hitachi SCD-005 Sputter Coater, and then observed with a Hitachi
S-3400N scanning electron microscope (Hitachi, Tokyo, Japan) operated at 5 kV.
DNA extraction and sequencing
DNA extraction and amplification of 28S rRNA were modified from the method of Tian et al. (2004) using the primers
NL1 (5-GCATATCAATAAGCGGAGGAAAAG-3) and NL4 (5-GGTCCGT GTTTCAAGACGG-3) (O’Donnell
1993). The methods for PCR analysis were according to the method of Yang et al. (2014). PCR products were examined
by electrophoresis on 1% (w/v) agarose gels stained with ethidium bromide in 1×TAE buffer. The sequences were
deposited in the GenBank database (Table 1).
Phylogenetic analysis
Sequences were aligned using ClustalX 1.83 (Thompson et al. 1997) and MEGA 6.0. Partitioned and combined
data matrices were analysed by maximum parsimony (MP) and Bayesian analyses (BA) using the Puccinia tanaceti
(AB190908) sequence obtained from GenBank as the out-group. Sequence alignments were deposited at TreeBase
(http://www.treebase.org/) under accession number 16998. Parsimony analyses were performed in PAUP* 4.0b10
(Swofford 2002), with all dataset characters treated as equally weighted and gaps treated as missing data. Trees
were inferred using the heuristic search option with tree bisection and reconnection (TBR) branch swapping and
1,000 random sequence additions. Clade stability was assessed using a bootstrap (BT) analysis with 1,000 replicates
(Felsenstein 1985). The BA was performed using MrBayes 3.1 (Ronquist et al. 2005) with Markov chain Monte Carlo
(MCMC) and Bayesian posterior probabilities (Larget & Simon 1999). Default parameters were selected, and the
TWO NEW PHRAGMIDIUM SPECIES Phytotaxa 217 (2) © 2015 Magnolia Press 185
evolutionary model was set to the GTR model with gamma-distributed rate variation across sites and a proportion of
invariable sites (Ronquist et al. 2005). The simultaneous Markov chains were run with 1,000,000 generations, and the
tree were sampled every 100th generation.
Results
Morphology
Based on the characteristics of multiple-celled teliospores borne singly on hygroscopic pedicels and 23 germ pores
in each spore cell, the present two species identified on Rosa were assigned to Phragmidium and illustrated as Ph.
zhouquensis and Ph. longissima in the taxonomy section (Figs. 1, 2).
Molecular phylogeny
The 28S phylogenetic trees included the 30 samples listed in Table 1. Following alignment, the final dataset contained
620 total characters, with 461 constant characters and 54 parsimony-uninformative variable characters. MP analysis
with the remaining 105 parsimony-informative characters resulted in eight equally parsimonious trees with the
following parameters: tree length (TL) = 256; consistency index (CI) = 0.742; retention index (RI) = 0.912; and
rescaled consistency index (RC) = 0.677. The average standard deviation of split frequencies calculated by BA was
0.008781.
MP and BA gives the same topology that the two new species formed two distinct lineages with a BT value and
Bayesian posterior probability of 96/0.97 and 100/1.00, respectively (Fig. 3).
Taxonomy
Phragmidium zhouquensis Y. M. Liang & T. Yang, sp. nov. (Fig. 1)
MycoBank no.:—MB811453
Etymology:—Zhouquensis, referring to the location of the collection of this species.
Diagnosis:—Telia hypophyllous, dark brown, teliospores 67–103 × 32–39 m, (3–)6–8(–9)-celled, yellowish
brown, apical papilla 3.5–6 m, verrucose, 2–3 germ pores in each cell, pedicels 80–160 × 14–24 m.
Type :—CHINA, Gansu Province, Zhouqu County, on Rosa omeiensis Rolfe (Rosaceae), 20 August 2014, coll. Y.
M. Liang & B. Cao (Holotype: BJFC-R01516; Paratype: BJFC-R01529).
Spermogonia, aecia, and uredinia unknown.
Telia produced on the abaxial leaf, scattered or loosely grouped, minute, 0.5–2.5 mm, pulverulent, dark brown,
leaf colour turns rose-red to aubergine at the position of the sorus (Figs 1A, 1B); teliospores ellipsoid-oblong to
cylindrical, 67–103 × 32–39 m, 3–9-celled, mostly 6–8-celled, the uppermost cell longer than the others, rounded at
both ends, often somewhat attenuate at the apex, wall 2–5 m thick, yellowish brown (Figs 1E, 1F), with coarse and
nearly hyaline verrucae on the spore surface (Figs 1C, 1D), apical papilla conical, pale-coloured or hyaline with dense
tubercles, 3.5–6 m long, not constricted at the septa, with 2–3 germ pores in each cell (Fig. 1E); pedicels 80–160 m
long, persistent, upper part colourless or pale brown, lower part with coarse surface and yellowish content, slightly
swollen, gradually become lanceolate, approximately 14–24 wide at the broadest diameter (Figs 1D, 1E).
Notes:—Phragmidium primarily parasitise Potentilla, Rubus, and Rosa, and rust species do not overlap among
these three host genera. Of the 11 Phragmidium species reported on Rosa in China, four species colonise Rosa omeiensis,
including Ph. mucronatum, Ph. robustum, Ph. rosae-omeiensis, and Ph. tuberculatum (Table 2). Phragmidium
zhouquensis differed from Ph. mucronatum primarily by the dark brown telia (Figs 1A, 1B) and short papilla with
lengths up to 6 m (Figs 1D, E), whereas Ph. mucronatum telia were black and teliospores with papillae at the top
had lengths up to 17 m (Wei 1988, Zhuang et al. 2012). Phragmidium robustum was characterized by wider and
more robust teliospores (50–106 × 35–48 m), mostly 5–6-celled, with longer pedicels of 70–190 m (Zhuang & Wei
2009, Zhuang et al. 2012); these features can be used to distinguish it from the present species. The new species Ph.
zhouquensis could be distinguished from Ph. rosae-omeiensis by its verrucose teliospores (Fig. 1D); by contrast, the
surface of Ph. rosae-omeiensis teliospores was smooth. The common species, Ph. tuberculatum, can be distinguished
YANG ET AL.
186 Phytotaxa 217 (2) © 2015 Magnolia Press
from Ph. zhouquensis according to its 1–8-celled (mostly 6-celled) teliospores bearing long papillae (7–23 m) at the
spore apices; the papillae of Ph. zhouquensis were 3.5–6 m long (Figs 1D, 1E) (Wei 1988, Zhuang et al. 2012).
Phragmidium zhouquensis
can be distinguished from other morphologically closely-related Rosa species as
follows. Phragmidium fusiforme is one of the most widespread Phragmidium species in the northern hemisphere; it
is characterized by multiple-celled (mostly greater than 10-celled) and fusiform teliospore with long papilla up to 15
m at the spore apex, which is obviously different from that of the present species (Wei 1988, Hiratsuka et al. 1992,
Wahyuno 2001, Zhuang et al. 2012). Phragmidium zhouquensis also differed from Ph. montivagum by the dark brown
telia (Figs 1A, 1B) with ellipsoid-oblong to cylindrical teliospores and lanceolate pedicels (Figs 1D, 1E), whereas
the latter species had black telia aggregated by fusiform or subclavate teliospores with hygroscopic and bulbous
pedicels.
FIGURE 1. Phragmidium zhouquensis (BJFC-R01516, holotype). A. Gross features of infected leaves. B and C. Surface view of telium.
D. Teliospores with verrucose surface. E. Teliospores with yellow content and hyaline verrucae, 2–3 germ pores in each cell. F. Vertical
section of telium. Scale bars: A = 1 cm; B = 500 m; C and F = 200 m; D and E = 50 m.
Phragmidium longissima Y. M. Liang & T. Yang, sp. nov. (Fig. 2)
MycoBank no.:—MB811452
Etymology:—Longissima, referring to the characteristically long teliospores of this species.
Diagnosis:—Urediniospores uniformly echinulate, with pore membrane at the germ pore, telia black, teliospores
(8–)9–11(–12)-celled, 85–122 × 21–30 m, wall dark brown, verrucose, papilla 2.5–5.5 m, verrucose, pedicel length
0.51 times the spore length.
Holotype:—CHINA, Yunnan Province, Lanping County, Mt. Changyan, on Rosa lichiangensis T. T. Yu & T. C .
Ku, 18 September 2011, coll. T. Yang, Exsiccate BJFC-R00338.
TWO NEW PHRAGMIDIUM SPECIES Phytotaxa 217 (2) © 2015 Magnolia Press 187
FIGURE 2. Phragmidium longissima (BJFC-R00338, holotype). A. Vertical section of paraphyses in uredinium. B. Urediniospore with
echinulate surface. C. Globose or sub-globose urediniospores with pore membrane at the germ pore (arrow indicates the position of the
pore membrane). D. Teliospore with two germ pores in each cell. E. Black telium on the abaxial leaf. F. Vertical section of telium. G.
Surface view of telium. H and I. Teliospores with verrucose surface and smooth pedicel. Scale bars: A and C = 20 m; B = 10 m; C and
I = 20 m; D and H = 50 m; E = 200 m; F and G = 100 m.
Paratype:—CHINA, Yunnan Province, Lanping County, Mt. Luoguqing, on Rosa lichiangensis T. T. Yu & T. C.
Ku, 19 September 2011, coll. T. Yang, Exsiccate BJFC-R00360.
Spermogonia and aecia unknown.
Uredinia hypophyllous, scattered or loosely grouped, minute, rounded, 0.05–0.2 mm across, pale yellow;
paraphyses numerous, clavate or broadly clavate, 42–75 × 16–30 m, sub-erect or incurved, located around the sorus,
wall smooth, colourless (Fig. 2A); urediniospores globose or sub-globose, 20–26 × 18–21 m, wall approximately 1
m thick, uniformly echinulate, colourless, wall at germ pore conspicuously intruding in the spore lumen to form a
pore membrane (Figs 2B, 2C). Telia produced on the abaxial leaf, scattered or grouped, minute, irregular in shape, 0.1–
0.3 mm across, early naked, pulverulent, black (Fig. 2E); teliospores cylindrical, 8–12-celled, generally 9–11-celled,
85–122 × 21–30 m, round at both ends, not constricted at the septum, apical papillae obtuse, approximately 2.5–5.5
m long, brownish-yellow, densely verrucose, usually two germ pores in each cell, wall approximately 2–5 m thick,
dark brown, densely and minutely verrucose, with colourless tubercles (Figs 2D, 2F–2I); pedicles persistent, 65–111
m long, average length 0.51 times the spore length, swelling broadly clavate at the lower half, approximately 11–17
m at the broadest diameter, brownish-yellow in the upper half, nearly colourless in the lower half, smooth (Figs 2C,
2H).
Notes:—Phragmidium longissima differed from Ph. rosae-multiflorae in that it had uniformly echinulate
urediniospores (Fig. 2B) and generally 9–11-celled teliospores (Figs 2D, 2F), whereas the latter was characterized
by verrucose urediniospores and mostly 7–8-celled teliospores. Phragmidium. rosae-multiflorae pedicels were
YANG ET AL.
188 Phytotaxa 217 (2) © 2015 Magnolia Press
obviously wider (up to 30 m) than those of Ph. longissima (Wei 1988, Hiratsuka et al. 1992, Zhuang et al. 2012).
Phragmidium americanum was similar to Ph. longissima with respect to teliospore size and cell number, but was
distinct in that teliospores were sometimes slightly narrowed above and the pedicel length averaged 11.5 times the
spore length (Cummins 1931, Wahyuno 2001). Phragmidium longissima resembled Ph. rosae-californicae in the size
of teliospores and pedicels, but was distinguished by the rounded cells at both teliospore ends (Fig. 2D). Phragmidium
rosae-californicae was characterized by teliospores strikingly acuminate above and with a typically longer apical
cell, which graded directly into the apiculus (Cummins 1931). Phragmidium americanum and Ph. rosae-californicae
are distributed primarily in North America and have never been recorded in China (Cummins 1931). Phragmidium
longissima was the first Phragmidium species reported on Rosa lichiangensis, which obviously differed from all the
previously described Phragmidium species by the uredinial and telial host range (Wei 1988, Hiratsuka et al. 1992,
Wahyuno 2001, Tykhonenko 2007, Zhuang & Wei 2009, Zhuang et al. 2012).
FIGURE 3. Phylogram constructed by maximum parsimony and Bayesian analyses based on 28S sequences. Bootstrap values were
calculated from 1,000 replications. Parsimony bootstrap (before the slash marks) and Bayesian posterior probabilities (after the slash
marks) greater than 50% are shown. Bars: 10 nucleotide substitutions. New species are shown in bold.
TWO NEW PHRAGMIDIUM SPECIES Phytotaxa 217 (2) © 2015 Magnolia Press 189
Discussion
The new species Ph. zhouquensis was characterized by dark brown telia and 3–9-celled teliospores (Fig. 1E) with
minute verrucae on the surface and a 3.5–6 m long papilla at the spore apex (Fig. 1D). The other new species, Ph.
Longissima, was characterized by echinulate urediniospores (Fig. 2B), with a pore membrane at the germ pore (Fig.
2C), 9–11-celled teliospores with typically two germ pores per cell, and hygroscopic pedicels of about 0.51 times the
spore length (Fig. 2D).
The phylogenetic results indicate that Ph. zhouquensis and Ph. longissima are two distinct lineages with high BT and
Bayesian posterior probability (96/0.97 and 100/1.00, respectively) (Fig. 3). The two new species are phylogenetically
distinct from other Phragmidium species. Phragmidium zhouquensis is more closely related to Ph. fragariae, which
is parasitic to Potentilla plants; however, they are clearly different in terms of telial characteristics. The telia of Ph.
fragariae are often present on the petioles of Potentilla, while the telia of Ph. zhouquensis are only found on the leaf
surfaces of Rosa. Except for the difference of host range and infect different portions of the plants. Ph. zhouquensis
is characterized by larger teliospores (67–103 × 32–39 m) with mostly 6–8-celled and conical papillae at the top of
spores, while Ph. fragariae has 2–5-celled teliospores (46.5–77.5 × 24–34.5 m) without papillae. Furthermore, Ph.
fragariae also differs from Ph. zhouquensis in that it has shorter pedicels (24.5–57 m in length vs. about 80–160 m
in length) (Petrova & Denchev, 2004). The high supported cluster formed by two Ph. longissima specimens is treated
as a sister clade of Ph. mucronatum, which is also found on Rosa plants. However, they are morphologically different
in many respects. Phragmidium longissima is characterized by long, mostly 9–11-celled teliospores (85–122 × 21–30
m), while the teliospores of Ph. mucronatum are commonly 5–9-celled and 67.5–103.5 m long. In addition, Ph.
mucronatum has papilla at the top of the teliospore (up to 13.5 m long), which are clearly longer than those of Ph.
longissima (Wei 1988, Hiratsuka et al. 1992, Wahyuno 2001, Zhuang et al. 2012).
According to the consensus results of morphological and phylogenetic analyses, Ph. zhouquensis and Ph. longissima,
which were collected from two native Rosa species (R. omeiensis and R. lichiangensis, respectively), are two distinct
taxa.
Acknowledgements
This research was supported by the National Natural Science Foundation of China (no. 31470646). We wish to thank
the Herbarium Mycologicum Academiae Sinicae, Beijing, China (HMAS), for providing herbarium specimens.
References
Cao, Z.M. & Li, Z.Q. (1996) Rust fungi of Qinling flora (in Chinese with English summary). Journal of Northwest Forestry College 11:
91–98.
Cao, Z.M. & Li, Z.Q. (1999) Rust fungi of Qinling Mountains. China Forestry Publishing House, Beijing. [in Chinese]
Cummins, G.B. (1931) Phragmidium species of North America: differential teliospore and aecial characters. Mycologia 23 (6): 433–445.
http://dx.doi.org/10.2307/3753907
Cummins, G.B. & Hiratsuka, Y. (2003) Illustrated genera of rust fungi, 3rd edn. The American Phytopathological Society Press, St.
Paul.
Felsenstein, J. (1985) Phylogenies and the comparative method. The American Naturalist 125 (1): 1–15.
http://dx.doi.org/10.1086/284325
Hiratsuka, N., Sato, S., Katsuya, K., Kakishima, M., Hiratsuka, Y., Kaneko, S., Ono, Y., Sato, T., Harada, Y., Hiratsuka, T. & Nakayama,
K. (1992) The rust flora of Japan. Tsukuba Shuppankai, Tsukuba.
Larget, B. & Simon, D.L. (1999) Markov Chain Monte Carlo algorithms for the Bayesian Analysis of phylogenetic trees. Molecular
Biology and Evolution 16 (6): 750–759.
http://dx.doi.org/10.1093/oxfordjournals.molbev.a026160
Lu, L.D., Gu, C.Z., Li, C.L., Alexander, C., Bartholomew, B., Brach, A.R., Boufford, D.E., Ikeda, H., Ohba, H., Robertson, K.R. &
Spongberg, S.A. (2003) Rosaceae. Flora of China 9: 46–434.
Matthews, V.A. (1995) Rosa Linnaeus. In: Cullen, J., Alexander, J.C.M., Brady, A., Bickell, C.D., Green, P.S., Heywood, V.H., Jörgensen,
YANG ET AL.
190 Phytotaxa 217 (2) © 2015 Magnolia Press
P.M., Jury, S.L., Knees, S.G., Leslie, A.C., Matthews, V.A., Robson, N.K.B., Walters, S.M., Wijnands, D.O. & Yeo, P.F. (Eds.) The
European garden flora, a manual for the identification of plants cultivated in Europe, both out-of-doors and under glass. Cambridge
University Press. Cambridge, pp. 358–379.
O’Donnell, K. (1993) Fusarium and its near relatives. In: Reynolds, D.R. & Taylor, J.W. (Eds.) The fungal holomorph: mitotic, meiotic
and pleomophic speciation in fungal systematics. CABI, Wallingford, pp. 225–233.
Petrova, R.D. & Denchev C.M. (2004) A taxonomic study of Phragmidiaceae (Uredinales) in Bulgaria. Mycologia Balcanica 1: 95–115.
Posada, D. & Crandall, K.A. (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817–818.
http://dx.doi.org/10.1093/bioinformatics/14.9.817
Ronquist, F., Huelsenbeck, J.P. & van der Mark, P. (2005) MrBayes 3.1 Manual.
Swofford, D.L. (2002) PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4.0b10. Sinauer, Sunderland, MA.
Tai, F.L. (1979) Sylloge fungorum sinicorum. Science Press, Beijing. [in Chinese]
Thomson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. & Higgins, D.G. (1997) The ClustalX windows interface: exible strategies for
multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25: 4876–4882.
http://dx.doi.org/10.1093/nar/25.24.4876
Tian, C.M., Shang, Y.Z., Zhuang, J.Y., Wang, Q. & Kakishima, M. (2004) Morphological and molecular phylogenetic analysis of
Melampsora species on poplars in China. Mycoscience 45: 56–66.
http://dx.doi.org/10.1007/S10267-003-0150-Z
Tykhonenko, Y.Y. (2007) Geographical distribution of the genus Phragmidium Link. Ukrainian Botanical Journal 64 (1): 35–41.
Wahyuno, D., Kakishima, M. & Ono, Y. (2001) Morphological analyses of urediniospores and teliospores in seven Phragmidium species
parasitic on ornamental roses. Mycoscience 42: 519–533.
http://dx.doi.org/10.1007/BF02460950
Wei, S.X. (1988) A taxonomic study of the genus Phragmidium of China. Mycosystema 1: 179–210.
Xu, B., Zhao, Z.Y. & Zhuang, J.Y. (2013) Rust fungi hitherto known from Xinjiang (Sinkiang), northwestern China. Mycosystema 32:170–
189.
Yun, H.Y., Minnis, A.M., Kim, Y.H., Castlebury, L.A. & Aime, M.C. (2011) The rust genus Frommeëlla revisited: a later synonym of
Phragmidium after all. Mycologia 103 (6): 1451–1463.
http://dx.doi.org/10.3852/11-120
Zhuang, J.Y. & Wang, S.R. (2006) Uredinales of GanSu in northwestern China. Journal of Fungal Research 4: 1–11.
Zhuang, J.Y. & Wei, S.X. (2003) Uredinales of Kilien Mountains and their adjacent areas in Qinghai, China. Mycosystema 22: 107–112.
Zhuang, J.Y., Wei, S.X. & Wang, Y.C. (2012). Flora fungorum sinicorum. Vol. 41. Uredinales IV. Science Press, Beijing. [in Chinese]
Zhuang, W.Y. (2005) Fungi of northwestern China. Mycotaxon Ltd, New York, 430 pp.
Zhuang, J.Y. & Wei, S.X. (2009) Three new species and two new Chinese records of the genus Phragmidium (Uredinales, Phragmidiaceae).
Mycosystema 28 (5): 623–629.
... Phragmidium species are parasitic on plants of the family Rosaceae, particularly those in the genera Potentilla, Rosa, and Rubus (Dietel 1905). More than 65 Phragmidium species have been established (Cummins 1931;Arthur 1934;Hiratsuka 1935;Wahyuno et al. 2001;Cummins and Hiratsuka 2003;Yang et al. 2015;Ali et al. 2017). Species identification in Phragmidium has traditionally been based on morphological characteristics of teliospores, urediniospores, and aeciospores (Zhuang 1989;Wahyuno et al. 2001;Zhuang et al. 2012). ...
... Some authors divided the aeciospore-surface structures of Phragmidium species living on the genus Rosa into seven types (E-1, E-2, E-3, E-4, E-5, AA, and AV) and concluded that the aeciospore-surface structures are valuable diagnostic taxonomic markers (Wahyuno et al. 2002b). For China,39 Phragmidium species have been reported, of which 12 species occur in Tibet (Wei 1988;Zhuang and Wei 2003;Zhuang et al. 2012;Yang et al. 2015). ...
... The apical papillae of Ph. rosaemultiflorae and Ph. zhouquensis are clearly longer than those of Ph. chayuensis (Hiratsuka et al. 1992;Wei 1988;Yang et al. 2015). Phragmidium chayuensis is the first Phragmidium species reported on Rosa duplicata and is distinct from all previously described Phragmidium species based on the morphology of the urediniospores and teliospores (Hiratsuka et al. 1992;Tykhonenko 2007;Wahyuno et al. 2001;Wei 1988;Zhuang et al. 2012). ...
Article
Full-text available
Phragmidum spp. are rust fungi that are serious pathogens of plants in the Rosaceae. We characterized 15 Phragmidium species from Tibet, including 12 previously described and 3 new species. All the taxa, including the three new species (Ph. chayuensis, Ph. cibanum, Ph. zangdongii) are described and illustrated based on morphological characteristics. These taxa have multi-celled teliospores with firm pedicels. Phragmidium chayuensis is characterized by (5)7–9-celled teliospores with short papillae. Phragmidium cibanum is characterized by smooth teliospores that are distinctly constricted at the septa. Phragmidium zangdongii is characterized by large uredinia and 11–13-celled teliospores. Five types of urediniospore-surface structures were identified based on the gross shape of ornamentations and their distribution on the urediniospore wall. Molecular sequence data from the LSU rDNA analysis showed that the new taxa formed distinct clades independent from previously recorded species represented by LSU rDNA sequence data. The phylogenetic tree indicated that Phragmidium species are highly host specific.
... Based on morphological features or host associations, 1200 species belonging to 71 genera of 15 families were previously reported in China. Over 70 Phragmidium species have been described (Cummins 1931;Arthur 1934;Zhuang et al. 1998Zhuang et al. , 2003Zhuang et al. , 2005Zhuang et al. , 2012Wahyuno et al. 2001;Cummins and Hiratsuka 2003;Yang et al. 2015;Ali et al. 2017;Aime et al. 2018;Liu et al. 2018Liu et al. , 2019Liu et al. , 2020Ono and Wahyuno 2019;Aime and McTaggart 2021;Zhao et al. 2021). ...
... Phragmidium rosae-roxburghii was the first species of Phragmidium described on Rosa roxburghii. It is easily to distinguish species by its unique square to diamond-shaped urediniospores, since in other Phragmidium species the urediniosporas are oval to nearly spherical (Yun et al. 2011;Ono 2012;Zhuang et al. 2012;Yang et al. 2015;Liu et al. 2018Liu et al. , 2019Liu et al. , 2020Ono and Wahyuno 2019). In phylogeny, this species only kept a close relationship to Ph. warburgiana (Fig. 1) but its urediniospores are yellowish to orange-colored different to Ph. warburgiana with colorless urediniospores (Ono 2012). ...
Article
Full-text available
In this study, four new species of Phragmidium were proposed based on morphological and molecular characters. In morphology, Phragmidium rosae-roxburghii sp. nov. was distinguished to related taxa by its unique square to diamond-shaped urediniospores; Ph. rubi-coreani sp. nov. differed from Ph. barclayi and Ph. cibanum because of teliospores with fewer cells and shorter pedicels; urediniospores of Ph. potentillae-freynianae sp. nov. were bigger than Ph. duchesneae-indicae ; and Ph. rosae-laevigatae sp. nov. produced bigger urediniospores than Ph. jiangxiense . The phylogenetic analyses based on the combination of two loci (ITS and LSU) also supported our morphological conclusion. In the meantime, three previously known species were also described herein.
... Phragmidium was originally characterized by transversely septate multicellular teliospores with a basally thickened pedicel (Link 1816). Since then, the number of species ascribed to Phragmidium substantially increased (Dietel 1905a(Dietel , 1905bCummins 1931;Hiratsuka 1935;Wahyuno et al. 2002;Cummins and Hiratsuka 2003;Zhuang et al. 2012;Yang et al. 2015;Ali et al. 2017;Liu et al. 2018). By contrast, Kuehneola was distinguished from Phragmidium based on colorless, transversely septate, multicellular teliospores with a pedicel, with the type species originally classified as P. uredinis (Link) Arthur (= P. albidum (J.G. ...
... Twenty-two species of Kuehneola and over 70 species of Phragmidium have been reported around the world. Among these, four species of Kuehneola and 57 species of Phragmidium have been reported in East Asia (Hiratsuka et al. 1992;Wahyuno 2002;Yun et al. 2011;Ono 2012Ono , 2019Zhuang et al. 2012;Yang et al. 2015;Liu et al. 2018). This study aimed to determine the taxonomic status of Kuehneola species on Rosa from East Asia in relation to Phragmidium by morphological and molecular phylogenetic analyses. ...
Article
Full-text available
Kuehneola japonica and K. warburgiana are the only species of genus Kuehneola that parasitize plants belonging to genus Rosa (Rosaceae). Systematic revision of the genus Phragmidium and related genera by molecular phylogenetic analyses using nuc rDNA internal transcribed spacer (5.8S-ITS2 = ITS2) and nuc rDNA 28S (28S) sequences indicated that K. japonica and K. warburgiana belong to a group of Phragmidium species that also occur on Rosa. Morphological and molecular phylogenetic analyses revealed that these Kuehneola species were transferred to Phragmidium and renamed as P. japonicum and P. warburgianum. Two new Phragmidium species were also discovered on Rosa from China that could be distinguished from other species in the genus based on aeciospore or urediniospore morphology and phylogenetic placement. The first species, P. jiangxiense, is characterized by a urediniospore surface structure with stout spines that are basally embedded in the wrinkled spore wall. The second species, P. leucoaecium, is characterized by an aeciospore surface structure with irregularly elongated verrucae. Taxonomic descriptions and illustrations are provided.
... Phragmidium species typically have type 10 or 11 spermogonia, Calidion-type or Uredo-type uredinia, phragmosporous teliospores with two-three germ pores per cell of teliospore and Caeoma-type aecia (Cummins & Hiratsuka 2003). More than 70 taxa belonging to this genus are reported cosmopolitan (Cummins 1931, Arthur 1934, Hiratsuka 1935, Wahyuno et al. 2001, Cummins & Hiratsuka 2003, Zhuang et al. 2012, Yang et al. 2015, Ali et al. 2017, Liu et al. 2018, Liu et al. 2020. Eighteen species of Phragmidium are reported from Pakistan. ...
... (≡ Puccinia mucronata Pers.), which was found on Rosa. Almost 70 species of Phragmidium have been reported in the genus (Cummins 1931, Hiratsuka 1935, Wahyuno et al. 2001, Cummins and Hiratsuka 2003, Zhuang et al. 2012, Yang et al. 2015, Ali et al. 2017, Liu et al. 2018. Most of them are parasitic on plants of Potentilla, Rosa and Rubus (Dietel 1905). ...
Article
Phragmidium altaicum, a new causal fungus of a rose rust disease, is described and illustrated. The species, collected in Xinjiang Province, northwestern China, is well distinguished by its morphology and rDNA LSU and ITS sequences from the other Phragmidium species on Rosa. The new rust species is characterized primarily by 4–7-celled teliospores, bearing robust verrucae on the surface, aeciospore-surface structure of ‘Echinulate type 4,’ and urediniospore surface completely covered with echinulae with inapparent mushroom-shaped base. The sequence analysis showed that this species is closely allied to P. tuberculatum, but they differ in their morphological characteristics.
... Over 200 species names have been proposed for the genus, but currently some 70 species are accepted as valid. Seventeen species are known on Rosa in eastern Asia (Ali, Sohail, Mumtaz, & Berndt, 2017;Hiratsuka, Kaneko, & Nishigaki, 1980;Liu, Cao, Tao, Tian, & Liang, 2018;Yang et al., 2015;Zhuang, Wei, & Wang, 2012) and six in Japan (Hiratsuka et al., 1992;. Several species often cause serious rust diseases of ornamental roses in horticultural gardens and home gardens, although they are usually well managed in commercial cut-flower farms. ...
Article
The causal fungus of a rust disease of Rosa hirtula, endemic to mountainous areas of Fuji-Hakone-Izu National Park, Japan, was thought to be a common species Phragmidium rosae-multiflorae. Continued field observations, morphological examination, and experimental inoculations proved that the fungus produced laterally three-angled aeciospores and urediniospores together with multi-cellular teliospores on the same R. hirtula trees. These morphological features were different from those of P. rosae-multiflorae. The fungus parasitized only R. hirtula. Experimental inoculations and field observations did not prove that R. banksiae, R. laevigata, and R. multiflora supported infection and sporulation of the fungus. Under the field observations, R. multiflora, the most common host of P. rosae-multiflorae, was not proven to harbor the R. hirtula fungus. Therefore, the fungus was concluded to be a species distinct from P. rosae-multiflorae; and a new name, P. satoanum, was proposed for it.
... More than 65 species of Phragmidium have been described and almost half of them are known to parasitize wild and ornamental roses (e.g. Dietel 1905, 1905a, Cummins 1931, Hiratsuka 1935, Wahyuno et al. 2001, Helfer 2005, Yang et al. 2015, Farr & Rossman 2016. ...
Article
Full-text available
A new rust fungus, Phragmidium punjabense sp. nov., is described on Rosa brunonii from the Punjab province in Pakistan. The species can be readily distinguished from other Phragmidium spp. on Rosa but is very similar to a number of species on Rubus that belong to the "Phragmotelium group" within Phragmidium. In addition to the new species Phragmidium yangii is proposed as a new name for the illegitimate P. longissima Y.M.Liang & T.Yang and the new combination Phragmidium mysorense for Phragmotelium mysorense Thirum. & Mundk. In addition, the new rust fungus was sequenced using LSU and ITS markers and the sequences were submitted to GenBank as future barcode reference.
Article
Full-text available
During the research on rust fungi in medicinal plants of Guizhou Province, China, a total of 9 rust fungal species were introduced, including 3 new species (Hamaspora rubi-alceifolii, Nyssopsora altissima, and Phragmidium cymosum), as well as 6 known species (Melampsora laricis-populina, Melampsoridium carpini, Neophysopella ampelopsidis, Nyssopsora koelrezidis, P. rosae-roxburghii, P. tormentillae). Notably, N. ampelopsidis and P. tormentillae were discovered for the first time in China, while M. laricis-populina, Me. carpini, and Ny. koelreuteriae were first documented in Guizhou Province. Morphological observation and molecular phylogenetic analyses of these species with similar taxa were compared to confirm their taxonomic identities, and taxonomic descriptions, illustrations and host species of those rust fungi on medicinal plant are provided.
Article
Full-text available
Rust fungi taxonomically belonging to Pucciniales (Basidiomycota) are important phytopathogens that cause many significant diseases to agricultural crops and forest trees. Hitherto, ca. 8000 and 1200 species have been reported from worldwide and China, respectively. To investigate and document the diversity of rust fungi in China, we have sampled from 86 natural reserves and national parks in the past several years, and 6627 specimens have been collected. Our identification using both morphological and molecular data assigned 1654 collections to 337 species in 43 genera of 15 families, as cataloged in this paper. Among them, 34 new species are formally described based on their morphological distinctions and phylogenetic relationships. In addition, three new families Endoraeciaceae, Neophysopellaceae and Uromycladiaceae are proposed based on their morphological distinctions, phylogenetic independences and divergent times. Considering the traditionally morphologically defined families in Pucciniales have been increasing revealed to be discordant with phylogenetic groupings, taxonomic revisions are needed in future study to establish a natural classification system in Pucciniales. We also discussed the importance of morphologies in spermogonia and aecia for the delimitation of Puccinia and related genera. This study presents a significant contribution to the knowledge of rust flora in China. Taxonomic novelties: new families: Endoraeciaceae P. Zhao & L. Cai; Neophysopellaceae P. Zhao & L. Cai; Uromycladiaceae P. Zhao & L. Cai; new species: Chrysomyxa jinghongensis P. Zhao & L. Cai; Coleosporium sichuanense P. Zhao & L. Cai; Coleosporium smilacis P. Zhao & L. Cai; Cystopsora yunnanense P. Zhao & L. Cai; Gerwasia guanganensis P. Zhao & L. Cai; Gerwasia rubus-playfairianus P. Zhao & L. Cai; Hamaspora rubus-pirifolius P. Zhao & L. Cai; Macruropyxis guizhouensis P. Zhao & L. Cai; Macruropyxis paederiae P. Zhao & L. Cai; Melampsora hyperici-sampsonii P. Zhao & L. Cai; Melampsora linearis P. Zhao & L. Cai; Melampsora salicis-delavayanae P. Zhao & L. Cai; Neophysopella vitis-davidii P. Zhao & L. Cai; Phakopsora sophorae P. Zhao & L. Cai; Phragmidium nonapiculatum P. Zhao & L. Cai; Phragmidium kanas P. Zhao & L. Cai; Phragmidium duchesneae-indicae P. Zhao & L. Cai; Pileolaria medogensis P. Zhao & L. Cai; Puccinia amygdalus-iridis P. Zhao & L. Cai; Puccinia aphananthe-aspera P. Zhao & L. Cai; Puccinia microsorus P. Zhao & L. Cai; Puccinia nandina-domestica P. Zhao & L. Cai; Puccinia persicaria-odorata P. Zhao & L. Cai; Puccinia polygonum-aviculare P. Zhao & L. Cai; Puccinia pulverulentus P. Zhao & L. Cai; Puccinia saposhnikoviae P. Zhao & L. Cai; Puccinia sonchus-oleraceus P. Zhao & L. Cai; Puccinia thalictrum-finetii P. Zhao & L. Cai; Puccinia thalictrum-minus P. Zhao & L. Cai; Puccinia xingwenensis P. Zhao & L. Cai; Puccinia xinjiangensis P. Zhao & L. Cai; Puccinia zanthoxyli-chinensis P. Zhao & L. Cai; Uromyces aconiticola P. Zhao & L. Cai; Uromycladium yunnanense P. Zhao & L. Cai; new combinations: Chrysomyxa purpurea (C.J. You & J. Cao) P. Zhao & L. Cai; Neophysopella verannonae (Beenken) P. Zhao & L. Cai.
Article
Full-text available
This paper is the seventh in the Fungal Diversity Notes series, where 131 taxa accommodated in 28 families are mainly described from Rosa (Rosaceae) and a few other hosts. Novel fungal taxa are described in the present study, including 17 new genera, 93 new species, four combinations, a sexual record for a species and new host records for 16 species. Bhatiellae, Cycasicola, Dactylidina, Embarria, Hawksworthiana, Italica, Melanocucurbitaria, Melanodiplodia, Monoseptella, Uzbekistanica, Neoconiothyrium, Neopaucispora, Pararoussoella, Paraxylaria, Marjia, Sporormurispora and Xenomassariosphaeria are introduced as new ascomycete genera. We also introduce the new species Absidia jindoensis, Alternaria doliconidium, A. hampshirensis, Angustimassarina rosarum, Astragalicola vasilyevae, Backusella locustae, Bartalinia rosicola, Bhatiellae rosae, Broomella rosae, Castanediella camelliae, Coelodictyosporium rosarum, Comoclathris rosae, C. rosarum, Comoclathris rosigena, Coniochaeta baysunika, C. rosae, Cycasicola goaensis, Dactylidina shoemakeri, Dematiopleospora donetzica, D. rosicola, D. salsolae, Diaporthe rosae, D. rosicola, Endoconidioma rosae-hissaricae, Epicoccum rosae, Hawksworthiana clematidicola, H. lonicerae, Italica achilleae, Keissleriella phragmiticola, K. rosacearum, K. rosae, K. rosarum, Lophiostoma rosae, Marjia tianschanica, M. uzbekistanica, Melanocucurbitaria uzbekistanica, Melanodiplodia tianschanica, Monoseptella rosae, Mucor fluvius, Muriformistrickeria rosae, Murilentithecium rosae, Neoascochyta rosicola, Neoconiothyrium rosae, Neopaucispora rosaecae, Neosetophoma rosarum, N. rosae, N. rosigena, Neostagonospora artemisiae, Ophiobolus artemisiicola, Paraconiothyrium rosae, Paraphaeosphaeria rosae, P. rosicola, Pararoussoella rosarum, Parathyridaria rosae, Paraxylaria rosacearum, Penicillium acidum, P. aquaticum, Phragmocamarosporium rosae, Pleospora rosae, P. rosae-caninae, Poaceicola agrostina, P. arundinicola, P. rosae, Populocrescentia ammophilae, P. rosae, Pseudocamarosporium pteleae, P. ulmi-minoris, Pseudocercospora rosae, Pseudopithomyces rosae, Pseudostrickeria rosae, Sclerostagonospora lathyri, S. rosae, S. rosicola, Seimatosporium rosigenum, S. rosicola, Seiridium rosarum, Setoseptoria arundelensis, S. englandensis, S. lulworthcovensis, Sigarispora agrostidis, S. caryophyllacearum, S. junci, S. medicaginicola, S. rosicola, S. scrophulariae, S. thymi, Sporormurispora atraphaxidis, S. pruni, Suttonomyces rosae, Umbelopsis sinsidoensis, Uzbekistanica rosae-hissaricae, U. yakutkhanika, Wojnowicia rosicola, Xenomassariosphaeria rosae. New host records are provided for Amandinea punctata, Angustimassarina quercicola, Diaporthe rhusicola, D. eres, D. foeniculina, D. rudis, Diplodia seriata, Dothiorella iberica, Lasiodiplodia theobromae, Lecidella elaeochroma, Muriformistrickeria rubi, Neofusicoccum australe, Paraphaeosphaeria michotii, Pleurophoma pleurospora, Sigarispora caulium and Teichospora rubriostiolata. The new combinations are Dactylidina dactylidis (=Allophaeosphaeria dactylidis), Embarria clematidis (=Allophaeosphaeria clematidis), Hawksworthiana alliariae (=Dematiopleospora alliariae) and Italica luzulae (=Dematiopleospora luzulae). This study also provides some insights into the diversity of fungi on Rosa species and especially those on Rosa spines that resulted in the characterisation of eight new genera, 45 new species, and nine new host records. We also collected taxa from Rosa stems and there was 31% (20/65) overlap with taxa found on stems with that on spines. Because of the limited and non-targeted sampling for comparison with collections from spines and stems of the same host and location, it is not possible to say that the fungi on spines of Rosa differ from those on stems. The study however, does illustrate how spines are interesting substrates with high fungal biodiversity. This may be because of their hard structure resulting in slow decay and hence are suitable substrates leading to fungal colonisation. All data presented herein are based on morphological examination of specimens, coupled with phylogenetic sequence data to better integrate taxa into appropriate taxonomic ranks and infer their evolutionary relationships.
Article
Full-text available
A taxonomic revision of Phragmidiaceae in Bulgaria was carried out. Th e study yielded distribution of 5 genera, among which Frommeëla (F. tormentillae) is a new Bulgarian genus record, and 16 species on 46 hosts from Rosaceae, making 61 rust-host combinations. Trachyspora pentaphylleae is reported for the fi rst time from Bulgaria and the Balkan Peninsula. Twenty-two rust-host combinations are new records for Bulgaria, viz. Phragmidium bulbosum on Rubus canescens and R. praecox; Ph. mucronatum on Rosa canina var. andegavensis, R. dumalis, and R. pendulina; Ph. potentillae on Potentilla bornmuelleri and P. pedata; Ph. sanguisorbae on Sanguisorba minor subsp. muricata; Ph. tuberculatum on Rosa centifolia, R. chinensis, R. damascena, R. dumalis, R. pendulina, and R. turcica; Ph. violaceum on Rubus canescens var. glabratus, R. geniculatus, and R. radula; Trachyspora intrusa on Alchemilla catachnoa, A. connivens, A. gorcensis, A. incisa, and A. jumrukczalica. Twenty-six rust-host combinations, previously recorded for Bulgaria, are treated here as doubtful or wrong records, viz. Phragmidium bulbosum on Fragaria vesca, Rubus corylifolius, R. fruticosus, R. glandulosus, R. nemorosus, R. thyrsanthus, and Rubus thyrsoideus; Ph. fragariae on Fragaria vesca and Potentilla patula; Ph. fusiforme on Rosa gallica and R. pulverulenta (R. glutinosa); Ph. mucronatum on Rosa micrantha; Ph. potentillae on Potentilla crantzii; Ph. tuberculatum on Rosa arvensis, R. myriacantha, R. sepium, R. spinosissima, and R. vosagiaca; Ph. violaceum on Rubus fruticosus, R. macrostachys, and R. nemorosus; Kuehneola uredinis on Rubus caesius and R. glandulosus; Trachyspora intrusa on Alchemilla gracilima, A. heterophylla, and A. pubescens.
Article
This is a provisional list of rusts hitherto found in Xinjiang, a Chinese autonomous region located in Central Asia. The list is based on the specimens deposited in Herbarium Mycologicum Academiae Sinicae (HMAS), Mycological Herbarium of Xinjiang Agricultural University (HMAAC), and Herbarium Mycologicum Universitatis Tarimensis (HMUT), largely collected by the authors in the past years. These are the results of our own identification. A total of 181 species belonging to 16 genera are recorded, including unconnected species of form genera, Aecidium, Roestelia and Uredo. The aim of this study is to acquire further knowledge on fungal biodiversity in Xinjiang and to lay foundations for compilation of the rust flora of Xinjiang.
Article
We further develop the Bayesian framework for analyzing aligned nucleotide sequence data to reconstruct phylogenies, assess uncertainty in the reconstructions, and perform other statistical inferences. We employ a Markov chain Monte Carlo sampler to sample trees and model parameter values from their joint posterior distribution. All statistical inferences are naturally based on this sample. The sample provides a most-probable tree with posterior probabilities for each clade, information that is qualitatively similar to that for the maximum-likelihood tree with bootstrap proportions and permits further inferences on tree topology, branch lengths, and model parameter values. On moderately large trees, the computational advantage of our method over bootstrapping a maximum-likelihood analysis can be considerable. In an example with 31 taxa, the time expended by our software is orders of magnitude less than that a widely used phylogeny package for bootstrapping maximum likelihood estimation would require to achieve comparable statistical accuracy. While there has been substantial debate over the proper interpretation of bootstrap proportions, Bayesian posterior probabilities clearly and directly quantify uncertainty in questions of biological interest, at least from a Bayesian perspective. Because our tree proposal algorithms are independent of the choice of likelihood function, they could also be used in conjunction with likelihood models more complex than those we have currently implemented.
Book
— We studied sequence variation in 16S rDNA in 204 individuals from 37 populations of the land snail Candidula unifasciata (Poiret 1801) across the core species range in France, Switzerland, and Germany. Phylogeographic, nested clade, and coalescence analyses were used to elucidate the species evolutionary history. The study revealed the presence of two major evolutionary lineages that evolved in separate refuges in southeast France as result of previous fragmentation during the Pleistocene. Applying a recent extension of the nested clade analysis (Templeton 2001), we inferred that range expansions along river valleys in independent corridors to the north led eventually to a secondary contact zone of the major clades around the Geneva Basin. There is evidence supporting the idea that the formation of the secondary contact zone and the colonization of Germany might be postglacial events. The phylogeographic history inferred for C. unifasciata differs from general biogeographic patterns of postglacial colonization previously identified for other taxa, and it might represent a common model for species with restricted dispersal.
Article
Many species of Melampsora on Populus have been reported in China, based on morphological characteristics of both uredial and telial states, and on host species, but their morphology and taxonomy are still poorly defined. In this study, 196 specimens representing Melampsora species on poplars and collected from various areas of China were used for morphological observations. The morphological characteristics of urediniospores and teliospores were examined with light and scanning electron microscopy. The specimens could be classified into five groups based on their morphology. For the sequencing of the nuclear large subunit rDNA (D1/D2), 5.8S rDNA and their internal transcribed spacers, ITS1 and ITS2 region, 54 specimens were selected from the specimens used in morphological observations. These specimens were separated into six clades by phylogenetic analyses of the D1/D2 and ITS regions. Correlations among morphological groups and phylogenetic clades based on these results suggest a revision of these species. In particular, no evidence to discriminate specimens of M. acedioides, M. magnusiana, and M. rostrupii was found from either morphological characteristics or sequence analysis.