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Cytogenetical Studies in Wheat VI. Chromosome Location and Linkage Studies Involving Sr13 and Sr8 for Reaction to Puccinia Graminis F. Sp. Tritici

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Abstract and Figures

Sr 13 was located on the fl arm of chromosome 6A and showed a recombination value of 0.54±0.07 with the centromere. Sr8 was localized to the opposite (α) arm and exhibited a recombination value of 0.44 ± 0.05 with the centromere. Genetic independence between Sr13 and Sr8 was confirmed in a genetic study involving a cross between two near.isogenic lines, each carrying one of the genes. The use of rare chimaeric plants in monosomic populations for isolating marked chromosome misdivision products was demonstrated. The β telocentric arm of chromosome 6A, previously unavailable in any stock, was isolated by this means.
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CYTOGENETICAL
STUDIES
IN
WHEAT
VI..
CHROMOSOME
LOCATION
AND
LINKAGE
STUDIES
INVOLVING
Sr13
AND
Sr8
FOR
REACTION
TO
PUCCINIA
GRAMINIS
F.
SP.
TRITICI
By
R.
A.
McINTOSHt
[Manuscript
received
26
January
1972]
Abstract
Sr
13
was
located
on
the
fl
arm
of
chromosome
6A
and
showed
a
recombination
value
of
0·54±0·07
with
the
centromere.
Sr8
was
localized
to
the
opposite
(tt)
arm
and
exhibited
a
recombination
value
of
0·44
±
0·05
with
the
centromere.
Genetic
independence
between
Sr13
and
Sr8
was
confirmed
in
a
genetic
study
involving
a
cross
between
two
near.isogenic
lines,
each
carrying
one
of
the
genes.
The
use
of
rare
chimaeric
plants
in
monosomic
populations
for
isolating
marked
chromosome
misdivision
products
was
demonstrated.
The
fl
telocentric
arm
of
chromosome
6A,
previously
unavailable
in
any
stock,
was
isolated
by
this
means.
I.
INTRODUCTION
Athwal
and
Watson
(1956) found
that
common
wheat
(Triticum aestivum
L.)
cv.
Khapstein
possessed
two
genes, one
dominant
and
one recessive, for resistance
to
certain
cultures
of
Puccinia graminis Pers.
f.
sp. tritici
Eriks.
& E.
Henn.
isolated
in
Australia
prior
to
1954,
and
to
a
culture
of
Indian
origin.
North
American
studies
(Knott
1962)
indicated
that
Khapstein
carried
three
genes for resistance, one
of
which was identified as Sr7a.
The
other
two, previously unidentified, were designated
Sr
13
and
Sr
14.
Following
the
development
of
near-isogenic lines
carrying
genes for resistance
to
P. graminis
in
the
genetic
background
of
cv. Marquis
(Knott
1968)
it
has
been
established
at
this
institution
that
the
genes identified
by
Athwal
and
Watson
were
Sr13
and
Sr14.
Of
the
three
genes
in
Khapstein,
only
Sr13 confers resistance
to
all
Australian
field cultures. Cultures collected since 1954
are
virulent
on
Sr14
and
most
are
virulent
on
Sr7a.
This
paper
reports
on
the
location,
arm
localization,
and
genetic relationship
of
Sr13
and
Sr8.
The
latter
was previously
located
on
chromosome 6A (Sears 1954;
Sears, Loegering,
and
Rodenhiser 1957).
II.
MATERIALS
AND
METHODS
Khapstein
W 1451
(W
numbers
refer
to
the
Sydney
University
Wheat
Accession
Register)
was
crossed
as
the
male
parent
to
the
Chinese
Spring
monosomic
series.
Although
genes
for
resistance,
which
Khapstein
inherited
from
its
tetraploid
parent,
were
expected
to
reside
in
the
A
or
B
genomes,
the
full series
of
crosses
was
made
because
earlier
attempts
to
locate
genes
in
Khapstein
had
proved
unsuccessful.
*
Part
V,
Can.
J.
Genet. Cytol., 1970, 12, 60.
t
Department
of
Agricultural
Botany,
University
of
Sydney, Sydney,
N.S.W.
2006.
Aust.
J.
biol.
Sci.,
1972,25,
765-73
766
R.
A.
McINTOSH
Cytological
tests
for
validity
of
telocentric
rnisdivision
products
obtained
in
Fg
and
Fa
populations
involving
chromosome
6A
were
made
in
crosses
with
Chinese
Spring
plants
ditelo-
centric
for
the
'"
arm.
To
test
for allelism
between
Sr13
and
Sr8,
the
respective
near.isogenic
lines
(W
2401
and
W 2931)
were
crossed. Telocentric
mapping
of
Sr8
was
performed
by
analysing
the
selfed
progeny
of
a monotelodisornic (20" +
It")
plant
from
Chinese
Spring
monotelo-6A
*
4/Mentana
(pedigree
system
of
Purdy
et al. 1968)
and
the
test
cross
progeny
of
a monotelodisornic
plant
from
Chinese
Spring
monotelo-6A
*
5/Mentana.
The
P.
graminiB
cultures
utilized
were chosen for
appropriate
pathogenic
abilities.
These
were:
64726
(strain
designation
116---4,5
on
the
system
of
Watson
and
Luig
1963, 1965).
68-L-4
(34-1,2,3,4,5,6,7)
70-L-5
(34-1,2,3,4,5,6,7)
334 (126-6,7)
70290 (21-5)
University
of
Missouri
culture
59-51A
(59-5,7).
All
seven
cultures
are
avirulent
on
seedlings
withSr13
(infection
type
"2+3
=").
Virulence
on
seedlings
with
Sr8
is
denoted
by
"-6"
in
the
strain
designations
for
cultures
68-L-4,
70-L-5,
and
334.
Infection
types
produced
when
seedlings
with
Sr8
were
inoculated
with
avirulent
cultures
were
"2"
to
"3
=".
Seedling
populations
were
inoculated
and
tested
by
usual
procedures.
Mitotic
studies
were
performed
on
root
tips
that
had
been
treated
in
cold
water
or
in
a
saturated
solution
of
",-bromo-
naphthalene,
fixed
in
Farmer's
fixative,
hydrolysed
in
IN HCl,
and
stained
in
leuco-basic fuchsin.
For
meiotic
studies,
anthers
were
fixed
in
Farmer's
fixative,
hydrolysed
in
IN HOI,
and
stained
in
leuco-basic fuchsin.
TABLE
1
SEGREGATION
OF
REACTION
TO
PUOOINIA
GRAMINIS
CULTURE
64726
IN
F2
POPULATIONS
FROM
MONOSOMIC
Fl
PLANTS
OF
CROSSES
BETWEEN
CHINESE
SPRING
MONOSOMICS
AND
KHAPSTEIN
R,
resistant;
S, susceptible
Chromo-
Reaction
Chromo-
Reaction
Ch
Reaction
~
2 *
~
2 *
romo-~
2 *
X3:1
some
X3:1 X3:1
some
R S R S
some
R S
lA
91
29
0·04
1B
71
36
4·26
1D
68 22
0·01
2A
87 25
0·43
2B
102
41
1·03
2D
68 22
0'01
3A
71
29
0·85
3B
64 21 0
3D
73 15
2·97
4A
78 38
3·72
4B
61
25
0·76
4D
52 37
13·04
5A
9,( 23
1·78
5B
88 28
0·04
5D
68
24
0·06
6A 98 18
5·56
6B 67 17
1·02
6D 66 20
0·14
7A 77 37
3·38
7B 74 19
1·04
7D
61
28
1·98
Total
(excluding 6A): 1481
resistant,
536 susceptible,
X~:l
2·66
*
Values
for significance:
3·84
(P
=
0·05);
6·64
(P
=
0·01).
III.
RESULTS
(a)
Chromosome Location
of
Srl3
Seedling segregation ratios
in
progenies
of
Fl
plants from crosses between
the
various Chinese Spring monosomics
and
Khapstein
(Table
1)
deviated from those
expected
at
the
P =
0·05
level for single-factor
pair
segregation
in
three
instances.
Fl
F2
CYTOGENETICAL
STUDIES
IN
WHEAT.
VI
TABLE
2
SUMMARY
OF
STEPS
INVOLVED
IN
ANALYSIS
OF
Sr13
o = selfed cross
Chinese
Spring
mono-6A
X
Khapstein
I
1 I
h=~
h=~
10 10
48 : 9
(resistant:
susceptible)
50
: 9
Approx.
one-half
of
F2
population
transplanted
I I
22 : 5 23 : 7
1
0
.-----1-
10
_----.
767
I I I I
Homozygous
Four
monosomic,
Homozygous
Four
monosomic,
Fa
resistant
or
homozygous
resistant
or
homozygous
segregated
susceptible;
one
segregated
susceptible;
abnormally
nullisomic, sterile
abnormally
three
monotelo-
somic,
one
of
which
is 6A",
Fa
family
1581
segregated
as
follows:
30
resistant
: I
chimaera
: 6
susceptible
20"
+
t'
o
16
plants
progeny-
tested
(Table
4);
select
20"
+
t'
cross
with
diteio-
6A",
;
select 2n = 42tt
Q9
20"
+
t'
+
t'
Select
three
plants:
1
I I I
2n
= 42tt 41t 40
10 10 10
Cross
A:
three
plants
2n
=
41;
one
plant
2n
= 42t
I
cross
with
Chinese
Spring
Cross
B:
eight
plants
2n
=
41
Segregation
as
in
Table
3
cross
with
Chinese
Spring
Select
2n
= 42t
o
Homozygous
Segregated
resistant
Homozygous
susceptible
Segregation
as
in
Table
3
cross
with
Chinese
Spring
Segregation
as
in
Table
5
768
R.
A. MoINTOSH
Ratios for chromosomes
IB
and
4D
deviated
in
the
direction
of
excess susceptible
seedlings, whereas for
the
critical cross, a deviation
in
the
opposite direction was
expected. Hence chromosome 6A appeared
to
be
involved,
but
as this result was
not
considered
to
be
conclusive, approximately one-half
of
the
F2 populations were
transplanted
to
obtain
F3lines for
further
study.
F3
data,
obtained
using culture
68-L-4,
confirmed
that
Sr13 was located
in
chromosome 6A. Mitotic chromosome counts
on
two, three,
or
four seedlings within
each F3 line from
the
6A cross
permitted
deduction
of
the
chromosome constitution
of
each F2
plant.
Disomic F2
plants
which were resistant produced homozygous resistant
F3 families, whereas monosomic F2
plants
which were resistant gave progenies
with
clearly abnormal segregation ratios. On
the
other
hand
tests
on
F3 lines from
the
20 non-critical crosses confirmed single-gene segregation
in
each instance.
The F2
data
for chromosome 6A
and
the
various steps involved
in
subsequent
studies
are
summarized
in
Table
2.
Of
the
18
susceptible seedlings,
in
the
F2 popula-
tion
involving chromosome 6A,
12
were
transplanted.
One
of
these was nullisomic
in
appearance
and
proved
to
be sterile.
From
mitotic studies
of
progenies
it
was inferred
that
eight were monosomic, while three, which
had
been nullisomic-like
but
partially
fertile, were inferred
to
have
been monotelosomic. The telocentric derivative
in
one
of
these was identified as
6Aoc.
Since these derivatives were susceptible
to
P.
graminis,
the
test
established
that
the
population was indeed aneuploid for chromosome 6A
and
that
Sr13 was
not
located
in
the
ex
arm. The inclusion
of
eight presumed monosomic
plants
in
the
susceptible group was unexpected,
but
since
their
constitutions were
determined from mitotic chromosome counts
on
progenies,
other
explanations
are
possible. These plants
may
have been
monoisosomic-an
isochromosome would
not
be
identified
somatically-or
they
may
have been nullisomic for chromosome 6A
and
trisomic for a compensatory homoeologous chromosome. However,
their
normal
plant
vigour reduced
the
first possibility. A more likely explanation is
that
they
resulted from
out
crossing-the
pollination
of
20-chromosome eggs lacking chromosome
6A
by
21-chromosome pollen grains carrying
the
susceptible allele from a
plant
in
another
cross
or
from
an
outside source.
Poor
fertility
of
many
of
the
monosomic
Fl
plants
from
the
cv. Chinese Spring X
Khapstein
crosses was
noted
and
definite
instances
of
out
crossing were established in certain crosses.
(b)
Telocentric Mapping
of
Sr13
A seedling displaying a chimaeric reaction
to
P.
graminis
appeared
in
one
Fa
family from a resistant F2
plant.
This seedling was
transplanted
and
was found
to
have 20 bivalents
and
a telocentric univalent chromosome (20" +
t')
at
meiosis. Two
spikes were pollinated
with
cv. Chinese Spring
and
the
remaining spikes were
permitted
to
self.
The
telocentric chromosome was recovered
in
only one (1581/Chinese Spring
A.4)
of
12 seedlings obtained from
the
crosses. Chromosome counts
and
seedling
reactions
of
19
progeny
of
this individual
are
presented in Table 3. Mitotic chro-
mosome counts were obtained for
16
selfed seedlings from
the
chimaera. Their
frequencies, meiotic constitutions,
and
behaviour when progenies were tested,
are
given
in
Table
4.
Because
of
trisomy
of
the
ditelocentric individual, plants
with
20"
+
t'
were chosen for
further
study.
Firstly
an
individual with
two
telocentric
CYTOGENETICAL
STUDIES
IN
WHEAT.
VI
769
chromosomes from a cross
with
a Chinese Spring
plant
ditelocentric for
6Aot:
displayed,
at
meiosis, 20 bivalents
and
two telocentric univalents (20" +
t'
+ t'). This estab-
lished
that
the
telocentric being
tested
involved chromosome 6A
and
that
it
was
the
fJ
TABLE
3
CHROMOSOME
CONSTITUTIONS
AND
REACTIONS
TO
P.
GRAMINIS
CULTURE
70-L-5
IN
PROGENIES
OF
MONOTELODISOMIC
PLANTS
HETEROZYGOUS
FOR
Sr13
Reactions
of
Reactions
of
Chromosome 1581/Chinese
Spring
A.4
1581. 7/Chinese
Spring
Constitution
progeny progeny
1\
Resistant
Susceptible
Resistant
Susceptible
Total
42tt* 1
42tt
9 1
42 5 1
41
1 1
16 3
*
Including
two
telocentric
chromosomes.
t
Including
one
telocentric
chromosome.
1
4 2
11
4
1
17
6
arm
of
this chromosome. Secondly,
three
plants were selected from a selfed mono-
telocentric individual. One was ditelocentric
and
progeny
tests
established
that
it
was homozygous for Sr13. One was monotelocentric
and
mitotic counts
of
nine
progeny showed four with 2n =
41
t
and
five
with
2n = 40. The
41
t seedlings were
TABLE
4
CHROMOSOME
CONSTITUTIONS,
MEIOTIC
CONFIGURATIONS,
AND
REACTIONS
TO
P.
GRA-MINIS
CULTURE
70-L-5
OF
16
PLANTS
FROM
THE
SELFING
OF
Sr13
CHIMAERA
No.
of
Mitotic
Meiotic
Progeny
plants
count*
configuration
*
test
1
2n
= 43tt
19"
+
1'"
+
t"
Homozygous
resistant
1
2n
= 42t
20"
+
i'
+
t'
or
Segregating
20"
+
it"
1
2n
=
41
20"
+
i'
Segregating
10
2n
= 41t
20"
+
t'
Segregating
3
2n
= 40
20"
Homozygous
susceptible
* t =
telocentric;
i = isochromosome;
univalent;
bivalent;
=
trivalent.
resistant,
and
those
with
40 chromosomes susceptible,
to
culture
70-
L-5.
Three
seedlings with
2n
= 40 from a
third
plant
with 20" were susceptible as expected.
This
study
conclusively demonstrated
that
Sr13 was located in
the
telocentric
chromosome.
770
R.
A.
McINTOSH
In
a
third
study
involving a cross
with
Chinese Spring, a monotelodisomic
progeny
was
further
test-crossed
with
Chinese Spring.
Table
5 lists
the
somatic
counts
and
reaction
frequencies
of
the
progeny. One susceptible
individual
with
2n
= 43t, was considered
to
be
a recombination.
Of
two
seedlings
with
2n
=
41
t,
one was considered a
recombinant
and
the
other
a
parental
type.
As
the
telocentric
chromosome was
transmitted,
aneuploidy
must
have
involved
a different chromosome.
Of
two
plants
with
2n
= 41,
the
resistant
individual
was considered a
recombinant,
whereas
the
second, being susceptible, could
not
be
included
in
the
analysis since
it
may
have
been
deficient,
rather
than
parental,
for chromosome 6A.
Hence
of
20
gametes
sampled, 12 were
recombinant,
indicating
that
Sr13 is
independent
of
the
centromere
(recombination =
0·60±0·U).
TABLE
5
CHROMOSOME
CONSTITUTIONS
AND
REACTIONS
TO
P.
GRAMINIS
CULTURE
70-L-5
OF
21
SEEDLINGS
FROM
TEST·CROSS
OF
HETEROZYGOUS
MONOTELODISOMIC
PLANT
Chromosome
Reaction*
constitution
Resistant
Susceptible
43t
lR
42t
4P
6R
41t
IP
lR
42
3R
3P
41
lR
1-
* R =
recombinant;
P =
parental.
Data
for 23 selfed
progeny
from
the
test-crossed
plant
(1581.7 jChinese Spring)
are
included
in
Table
3.
Recombination
based
on
the
method
of
maximum
likelihood
for
the
combined
data
in
Table
3,
but
omitting
individuals
with
2n = 41, was
estimated
to
be
0·49±0·10.
A
recombination
estimate
using
the
pooled
test-cross
and
self
data
was
0·54±0·07.
(c)
Linkage
of
Sr8
and
Srl3
Thirty-six
F3lines
from
a cross
between
the
appropriate
near-isogenic lines were
tested
with
culture
334 which is
virulent
on
plants
with
Sr8,
and
with
culture
64726
which is
avirulent
on
plants
with
either
Sr8
or
Sr13. Because
oflow
seedling
numbers
in
some lines,
determinations
as
to
whether
lines were homozygous
resistant
or
segregating were
not
possible, especially
with
the
second
culture
where two-gene
segregation was expected.
Hence
lines were classified
into
three
groups,
the
expected
frequencies for which,
if
independence is assumed,
are:
12 homozygous
resistant
or
segregating
with
both
cultures, i.e.
genotypes
Sr13Sr13 - - andSr13sr13
--;
3 homozygous
resistant
or
segregating
with
culture
64726 only, i.e.
genotypes
sr13sr13 Sr8Sr8
and
sr13sr13 Sr8sr8;
1 homozygous susceptible
with
both
cultures, i.e.
genotypes
sr13sr13 sr8sr8.
CYTOGENETICAL
STUDIES
IN
WHEAT.
VI
771
The
realized
ratio
of
30 : 4 : 2 does
not
differ significantly from
the
expected distribu-
tion
(xL
(30 :
6)
=
1·33;
P>0·25).
This result indicated
that
Sr13
andSr8
are
not
linked.
(d)
Telocentric Mapping
of
Sr8
A monotelodisomic
plant
from
the
cross Ohinese Spring monotelo-6Aot *
5JMen-
tana
(a 2n =
41
individual being selected for each backcross) was test-crossed
with
Ohinese Spring. Mitotic chromosome counts
and
reactions
of
the
progenies
with
culture 70290, which is avirulent
on
seedlings
with
Sr8, are given
in
Table
6.
Among
91
gametes sampled,
41
recombinants were recovered. Recombination between Sr8
and
the
centromere was
estimated
to
be
0·46±0·05.
TABLE
6
MITOTIC
CHROMOSOME
COUNTS
AND
REACTIONS
TO
P.
GRAMINIS
CULTlTRE
70290
OF
TEST-CROSS
PROGENIES
OF
MONOTELODISOMIC
PLANT
FROM
CHINESE
SPRING
MONOTELO-6Acx
*
5/MENTANA
Direction
Chromosome
Reactiont
of
cross
No.
-,
Resistant
Susceptible
Male 42 16 10
42t 3
Female
42 14 12
42t
20
16
Total
42
30P
22R
42t
20R
19P
t P =
parental;
R =
recombinant.
TABLE
7
CHROMOSOME
COUNTS
AND
REACTIONS
TO
P.
GRAMINIS
CULTlTRE
59-51A
OF
PROGENY
OF
SELFED
MONOTELODISOMIC
PLANT
FROM
CHINESE
SPRING
MONOTELO-6Acx
*
4/MENTANA
Chromosome
Reaction
Total
No.
Resistant
Susceptible
42 22 4 26
42t 13 2 15
42tt 1 1 2
Total
36 7 43
A selfed population from a monotelodisomic
plant
in
cross Ohinese Spring
monotelo-6Aot * 4JMentana was scored mitotically for chromosome
number
and
tested
with
culture 59-51A. Frequencies
and
reaction classes are presented
in
Table
7.
Some reactions considered doubtful
on
a single-plant basis were confirmed
by
772
R.
A.
McINTOSH
progeny
testing.
Recombination,
based
on
the
method
of
maximum
likelihood, was
estimated
at
0·37±0·09.
Using
the
pooled test-cross
and
self
data,
recombination
between
Sr8
and
the
centromere
was
estimated
to
be
0·44±0·05.
IV.
DISCUSSION
Genes Sr8
and
Sr13 concerned
with
reaction
to
P.
graminis were
located
in
opposite
arms
of
chromosome 6A. Sr8 was localized
to
the
IX
(standard)
arm
and
showed
recombination
of
0·44±0·05
with
the
centromere, whereas
the
estimate
of
0·54±0·07
suggests
that
Sr13 is
independent
of
the
centromere
in
the
(3
arm.
These
findings were
supported
by
a
concurrent
genetic
study
indicating
that
Sr8
and
Sr13
were
independently
inherited.
The
studies
with
Sr13
demonstrated
the
value
of
occasional chimaeric
plants
which
may
appear
in
segregating populations.
Such
chimaeras
frequently
carry
chromosome misdivision
products
which
can
be
used
for chromosome
arm
determina-
tions
and,
if
telocentric as
in
this
study,
for telocentric mapping. However, misdivi-
sion
products
are
not
always stable.
From
a chimaeric seedling
with
part
of
its
tissue
having
a telocentric,
or
isochromosome,
bearing
the
particular
dominant
(or hemi-
zygous effective)
marker,
subsequent
growth
appears
to
be
random.
Hence
the
misdivision
products
are
not
always recovered,
or
they
may
be
somatically
unstable
(Steinitz-Sears 1966).
The
detection
of
a
chimaera
in
these
studies
not
only
permitted
the
determination
of
the
particular
arm
bearing Sr13,
but
also allowed
the
isolation
of
a telocentric chromosome which was previously
unavailable
in
wheat.
Moreover,
the
newly isolated telochromosome is
marked
with
Sr13 which should
enhance
its
value for
future
mapping
purposes. As
the
result
of
recombination
and
further
selec-
tion, ditelocentric
6Aoc
stocks homozygous for Sr8 also should be available.
Although
Sr13 confers resistance
to
all
current
Australian
field
strains
of
P.
graminis
there
has
been
difficulty
in
exploiting
it
as a resistance source in commercial
wheat
cultivars. A physiological "black-chaff" condition
appears
to
be
associated
with
its
presence.
This
detracts
from
agronomic
appearance
and,
under
certain
conditions
at
least,
undoubtedly
leads
to
yield depression.
In
these
studies,
the
black-chaff condition
has
persisted
in
Sr
13-bearing
monotelodisomic individuals
after
backcrossing
to
Chinese Spring. This association requires
further
investigation
to
determine
the
intensity
of
linkage,
and
to
determine
the
relationship,
if
any,
between
the
black-chaff
characteristic
and
leaf
necrosis
characters
which
have
been
associated
with
chromosomes
of
homoeologous
group
6 (Sears 1954, 1966; Morris,
Schmidt,
and
Johnson
1970; Wenzel 1971). A well-known black-chaff
phenotype
allegedly
linked
with
field resistance
to
P.
graminis
has
been
associated
with
chromo-
some
3B
of
cv.
Hope
which, like
Khapstein,
resulted
from
a cross
of
tetraploid
with
hexaploid
wheat,
but
there
is
no
evidence
to
suggest
these
occurrences
are
related
in
any
way.
V.
ACKNOWLEDGMENTS
Financial
assistance
and
a
travel
grant
was
provided
by
the
Wheat
Industry
Research
Council
of
Australia. Segments
of
the
study
were
conducted
at
the
Univer-
CYTOGENETICAL
STUDIES
IN
WHEAT.
VI
773
sity
of
Missouri, where
the
author
was
the
recipient
of
a
Postdoctoral
Research
Fellowship
provided
by
the
Graduate
School.
Dr.
E. R. Sears
contributed
a cytological
analysis
and
Dr.
W.
Q. Loegering
provided
a P. graminis culture used
in
the
study.
I
am
grateful
to
Dr.
D.
G. Pederson
ofthis
Department
for calculation
ofthe
recombina-
tion
values. Technical assistance was
provided
by
Mr.
J.
Green
and
Miss
M.
Lowe.
VI.
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... The only formally named wheat stem rust resistance gene on chromosome arm 6AS is Sr8 [38,39]. Sr8 was located 4.6 ± 1.0 cM proximal to the simple sequence repeat (SSR) marker gwm334 (7.3 Mb in Svevo RefSeq v1.0) [40], indicating that Sr8155B1 (2.77-4.34 ...
... Sr8155B1 and other Sr genes on chromosome 6AChromosome 6A harbors several formally named Sr genes, including Sr8, Sr13, Sr26, and Sr52[38,58,59]. Of these, Sr13, Sr26, and Sr52 were located on the long arm of chromosome 6A and conferred seedling resistance to Pgt race TTKSK[24,[58][59][60]. Sr26 and Sr52 were introgressed into wheat from the wild species Thinopyrum ponticum (Podp.) ...
... Barkworth & D.R. Dewey and Dasypyrum villosum (L.) Candargy, respectively[61][62][63]. The absence of Sr13 in the resistant parent 8155-B1 was confirmed using a published diagnostic marker for Sr13[24].These results demonstrated that Sr8155B1 is different from the Sr13, Sr26, and Sr52 genes.The Sr8 alleles, including Sr8a and Sr8b, were mapped to the distal region of chromosome arm 6AS[38,39] but showed a very different resistance profile than Sr8155B1[22] (Table 2), indicating that they are different genes or alleles. The lack of markers linked to both Sr8 and Sr8155B1 and the absence of high-density genetic maps of Sr8 prevented establishing the mapping relationship between these two genes. ...
... Interestingly, the stem rust resistance gene Sr30 (Knott and McIntosh 1978), located on 5DL, is very close to QTL QSr.nbpgr-5DL_11. Furthermore, a QTL identified on the chromosome 6AS, QSr.nbpgr-6AS_11, coincided with QTL S6A_PART1_3015737 (Edae and Rouse 2020) and the Sr8 gene (McIntosh 1972). ...
... The four QTLs (QSr.nbpgr-3B_11:AX-94752977, QSr.nbpgr-6AS_11:AX-95148675, QSr.nbpgr-2AL_117-6:AX-95113306, and QSr.nbpgr-7BS_APR:AX-95092109) were successfully validated (Fig. 5), and it was observed that the two markers (AX-95148675 and AX-95113306) have been reported to be associated with the Sr8 and Sr21 genes, respectively (Chen et al. 2018;Edae and Rouse 2020;McIntosh 1972). One of the markers, AX-94752977, is near QTL S3B_PART2_251114407 (Edae and Rouse 2020), while the marker AX-95092109 was associated with an uncharacterized protein family (UPF0114). ...
Article
Stem rust is one of the major diseases threatening wheat production globally. To identify novel resistance quantitative trait loci (QTLs), we performed 35K Axiom Array SNP genotyping assays on an association mapping panel of 400 germplasm accessions, including Indian landraces, in conjunction with phenotyping for stem rust at seedling and adult plant stages. Association analyses using three genome wide association study (GWAS) models (CMLM, MLMM, and FarmCPU) revealed 20 reliable QTLs for seedling and adult plant resistance. Among these 20 QTLs, five QTLs were found consistent with three models, i.e., four QTLs on chromosome 2AL, 2BL, 2DL, and 3BL for seedling resistance and one QTL on chromosome 7DS for adult plant resistance. Further, we identified a total of 21 potential candidate genes underlying QTLs using gene ontology analysis, including a leucine rich repeat receptor (LRR) and P-loop nucleoside triphosphate hydrolase, which have a role in pathogen recognition and disease resistance. Furthermore, four QTLs (Qsr.nbpgr-3B_11, QSr.nbpgr-6AS_11, QSr.nbpgr-2AL_117-6, and QSr.nbpgr-7BS_APR) were validated through KASP located on chromosomes 3B, 6A, 2A, and 7B. Out of these QTLs, QSr.nbpgr-7BS_APR was identified as a novel QTL for stem rust resistance which has been found effective in both seedling as well as the adult plant stages. Identified novel genomic regions and validated QTLs have the potential to be deployed in wheat improvement programs to develop disease resistant varieties for stem rust and can diversify the genetic basis of resistance.
... The allele b of Sr7 was introduced into breeding from Australian wheat cultivars unintentionally in the 1920s and also originates from African bread wheat cultivars; the allele confers resistance to the stem rust races that are dominant in Australia [71] but not to Ug99 races [15], TTRTF [11], TKTTF, TKKTF, TKPTF, PKPTF, TKKTP [9] and some other races found in Europe [8,9,12] and Western Siberia [8]. The resistance conferred by the gene Sr8 on chromosome 6AS is associated with the alleles a and b [35][36][37]. The allele a is widely represented among modern cultivars while the allele b is rarely encountered [5,28]. ...
... The Sr13 gene was introgressed into common wheat cv 'Khapstein' from T. turgidum ssp. dicoccum cv 'Khapli C.I.4013′ [95] to chromosome 6AL [36]. The gene is temperaturesensitive (the highest resistance level was observed at 20-28 °C) and confers moderate resistance against stem rust races that are common in Pakistan and India, but the races found in Europe and North America are highly virulent to this gene [29,30]. ...
Article
Full-text available
Stem rust is one wheat’s most dangerous fungal diseases. Yield losses caused by stem rust have been significant enough to cause famine in the past. Some races of stem rust are considered to be a threat to food security even nowadays. Resistance genes are considered to be the most rational environment-friendly and widely used way to control the spread of stem rust and prevent yield losses. More than 60 genes conferring resistance against stem rust have been discovered so far (so-called Sr genes). The majority of the Sr genes discovered have lost their effectiveness due to the emergence of new races of stem rust. There are some known resistance genes that have been used for over 50 years and are still effective against most known races of stem rust. The goal of this article is to outline the different types of resistance against stem rust as well as the effective and noneffective genes, conferring each type of resistance with a brief overview of their origin and usage.
... dicoccum L.) Khapli are the two major sources of Sr13 in durum (Knott 1962 andKlindworth et al 2007). The Sr13 resistance gene from Khapli was transferred to the common wheat variety Khapstein from the cross Steinwedel 9 Khapli and was subsequently mapped on the distal region of the long arm of chromosome 6A by McIntosh (1972). The moderate resistance of Sr13 to TTKS makes it a good candidate for gene pyramiding with other stem rust resistance genes. ...
Article
Full-text available
Wheat stem rust caused by Puccinia graminis Pers. f. sp. tritici Eriks. and E. Henn. (Pgt), is one of the most destructive wheat diseases. It can cause up to 90 % yield loss in wheat production but has been effectively under control due to the successful deployment of resistant genes in wheat cultivars since the 1950s. The identification of molecular markers of flanking disease resistance genes simplifies the identification of stem rust resistance genes. The objective of this work was to identify the stem rust resistance gens Sr2, Sr13, Sr22 and Sr24 in some Egyptian wheat cultivars. Four SSR markers Xgwm533, Xwmc580, Xcfa2123 and Xbarc71 linked to stem rust resistance genes Sr2, Sr13, Sr22 and Sr24, respectively were used to identify these four genes in 38 Egyptian wheat cultivars. The analysis of 38 Egyptian wheat cultivars for markers linked to stem rust resistance genes indicates that Sr2 was present in 32 cultivars, while Sr13 was detected in 18 cultivars, Sr22 was also detected in 7 cultivars and Sr24 wasn't detected in any cultivar. These markers should be useful in marker-assisted pyramiding of stem rust resistance genes to develop new cultivars with multiple genes resistance against stem rust races in Egypt.
... Additionally, until recently Sr26 was not used in commercial varieties due to its yield penalty (Dundas et al. 2007), and Sr52 was translocated from Dasypyrum villosum (L.) lately (Qi et al. 2011). Sr8 is located on the short arm of chromosome 6A (McIntosh 1972) and its allele Sr8a is effective to local RHKTF and RRTTF races. Mapping of the flanking markers of QTL-6A-IT and QTL-6A-BR indicated these are physically located in the distal chromosome arm 6AS, where Sr8 was reported. ...
Article
Full-text available
Most wheat cultivars planted worldwide are susceptible to the stem rust Ug99 race group. To prepare for the potential spread of these races into South America, we aimed to identify genomic regions responsible for resistance to Ug99 race group in germplasm adapted to South America. Two RIL populations from a cross between a stem rust susceptible parent “Baguette 13” and resistant local parents “INIA Tero” and “BR23//CEP19/PF85490” were developed. Phenotypical evaluation was completed at the seedling stage in Uruguay and under field conditions in Uruguay and Kenya. Both RIL populations were genotyped using the GBS approach. Besides Sr24, three other resistance loci in “INIA Tero” were detected on chromosomes 2B, 6A, and 7B. All four QTL were effective to local races, whereas only the QTL on chromosome 2B was effective against the Ug99 race group. Besides Sr31, “BR23//CEP19/PF85490” also carries two other stem rust resistance loci on chromosomes 2B and 6A. All three explained the resistance in Uruguay, while only the QTL on 2B was effective to Ug99 in Kenya. The physical location suggested that the QTL identified on chromosome 2B in both populations may correspond to Sr28, which was confirmed using specific molecular markers. Further studies are needed to determine the relationship between QTL for resistance to local races identified on chromosomes 6A and 7B and previously reported resistance genes and QTL. The results of this study are highly relevant for breeding wheat cultivars with diverse and durable resistance to stem rust.
... The TRTTF-specific QTL QSr.rwg-6A.1 was identified at the distal end of chromosome arm 6AS. Among the known Sr genes in wheat, only Sr8 is located in this region (Bhavani et al. 2008;Chhetri et al. 2016;Dunckel et al. 2015;Knott and Anderson 1956;McIntosh 1972;Sears et al. 1957;Singh and McIntosh 1986). Two alleles (Sr8a and Sr8b) were previously identified at the Sr8 locus (McIntosh et al. 1995). ...
Article
Full-text available
Wheat production in many wheat-growing regions is vulnerable to stem rust, caused by Puccinia graminis f. sp. tritici (Pgt). Several previous studies showed that most of the durum cultivars adapted to the upper Great Plains in the USA have good resistance to the major Pgt pathotypes, including the Ug99 race group. To identify the stem rust resistance (Sr) genes in the durum cultivar ‘Lebsock’, a tetraploid doubled haploid (DH) population derived from a cross between Lebsock and Triticum turgidum ssp. carthlicum PI 94749 was screened with the Pgt races TTKSK, TRTTF, and TTTTF. The stem rust data and the genotypic data previously developed were used to identify quantitative trait loci (QTL) associated with resistance. We identified one QTL each on chromosome arms 4AL, 6AS, 6AL, and 2BL. Based on marker and race-specification analysis, we postulated that the QTL on 4AL, 6AS, 6AL, and 2BL correspond to Sr7a, Sr8155B1, Sr13, and likely Sr9e, respectively. The results indicated that most of the US durum germplasm adapted to the upper Great Plains likely harbors the four major Sr genes characterized in this study. Among these genes, Sr8155B1 was recently identified and shown to be unique in that it conferred susceptibility to TTKSK but resistance to variant race TTKST. Two, three, and one thermal asymmetric reverse PCR (STARP) markers were developed for Sr7a, Sr8155-B1, and Sr13, respectively. Knowledge of the Sr genes in durum germplasm and the new STARP markers will be useful to pyramid and deploy multiple Sr genes in future durum and wheat cultivars.
Article
Full-text available
Stem rust, caused by Puccinia graminis f. sp. tritici (Pgt), has potential to cause major yield losses in durum wheat. Development of durum cultivars with improved resistance to stem rust is a sustainable option for effective control of this disease. The present study was conducted to identify genomic regions associated with resistance to Ug99-derived Pgt races using a doubled haploid (DH) mapping population produced from a cross between the resistant experimental line A9919-BY5C and the moderately susceptible cultivar ‘Strongfield’. The parents and DH lines were phenotyped for adult plant disease severity and infection response at Njoro, Kenya, for four years, and for seedling reaction to race TTKSK in a containment facility near Morden, Canada. Composite interval mapping using 612 SNP and DArT markers indicated four significant QTL for resistance to stem rust on chromosomes 1B, 4A, 5B, and 6A. A major and stable QTL from A9919-BY5C was identified on the short arm of chromosome 6A (6AS), which accounted for 71% of variation explained for seedling resistance and up to 46% for field resistance. This QTL mapped near the Sr8 locus and may be Sr8155B1, or a novel gene at the same location. Another QTL for adult plant resistance from A9919-BY5C was mapped on chromosome 1B that explained up to 14% of the phenotypic variation and likely is Sr14. Two minor QTL were identified in ‘Strongfield’ on chromosomes 4A and 5B that were inconsistent over years. Markers associated with the 6AS and 1B QTL can be used to proactively stack resistance to Ug99-derived races of Pgt into Canadian durum wheat.
Article
Full-text available
Wheat stem rust, caused by Puccinia graminis f. sp. tritici Erikss. & E. Henn, can incur yield losses on susceptible cultivars of durum wheat, Triticum turgidum ssp. durum (Desf.) Husnot. Though several durum cultivars possess the stem rust resistance gene Sr13, additional genes in durum wheat effective against emerging virulent races have not been described. Durum line 8155-B1 confers resistance against the P. graminis f. sp. tritici race TTKST, the variant race of the Ug99 race group with additional virulence to wheat stem rust resistance gene Sr24 However, 8155-B1 does not confer resistance to the first-described race in the Ug99 race group: TTKSK. We mapped a single gene conferring resistance in 8155-B1 against race TTKST, Sr8155B1, to chromosome arm 6AS by utilizing Rusty/8155-B1 and Rusty*2/8155-B1 populations and the 90K Infinium iSelect Custom bead chip supplemented by KASP assays. One marker, KASP_6AS_IWB10558, cosegregated with Sr8155B1 in both populations and correctly predicted Sr8155B1 presence or absence in 11 durum cultivars tested. We confirmed the presence of Sr8155B1 in cultivar Mountrail by mapping in the population Choteau/Mountrail. The marker developed in this study could be used to predict the presence of resistance to race TTKST in uncharacterized durum breeding lines and also to combine Sr8155B1 with resistance genes effective to Ug99 such as Sr13 The map location of Sr8155B1 cannot rule out the possibility that this gene is an allele at the Sr8 locus. However, race specificity indicates that Sr8155B1 is different from the known alleles Sr8a and Sr8b.
Article
Full-text available
Leaf rust, caused by Puccinia triticina (Pt), is one of the most important fungal diseases of wheat worldwide. The common wheat genotype BT-Schomburgk selection (BTSS) and the durum wheat cultivar Tamaroi carry Lr23, which is effective against predominant Pt pathotypes in Australia. BTSS and Tamaroi were crossed with the seedling susceptible genotypes W195 and Bansi, respectively, and recombinant inbred line (RIL) F5:7 populations W195/BTSS (88 RILs) and Tamaroi/Bansi (85 RILs) were developed. These populations were screened against Pt pathotype 104-1,(2),3,(6),(7),11,13 at the seedling stage and monogenic segregation at the Lr23 locus was observed. A combination of DNA marker technologies and genomic resources were used to fine map the chromosome 2B region carrying Lr23 in both RIL populations to develop closely linked markers for its marker-assisted selection in common and durum wheat breeding. Three single-marker SNP assays (sunKASP_16, sunKASP_47, and sunKASP_48) were developed and validated for selecting Lr23 in common wheat and one single-marker SNP assay (KASP_69462) was validated for durum wheat. None of the SNP markers worked across both common wheat and durum wheat backgrounds. The SSR marker sun471 showed close linkage with Lr23 across both ploidy levels. Overall, robust markers linked with Lr23 for use across different socio-economic geographic regions of the world were developed.
Article
Stem rust, caused by Puccinia graminis f. sp. tritici, is a destructive disease of wheat that can be controlled by deploying effective stem rust resistance (Sr) genes. Highly virulent races of P. graminis f. sp. tritici in Africa have been detected and characterized. These include race TRTTF and the Ug99 group of races such as TTKSK. Several Canadian and U.S. spring wheat cultivars, including the widely grown Canadian cultivar 'Harvest', are resistant to TRTTF. However, the genetic basis of resistance to TRTTF in Canadian and U.S. spring wheat cultivars is unknown. The objectives of this study were to determine the number of Sr genes involved in TRTTF resistance in Harvest, genetically map the resistance with DNA markers, and use markers to assess the distribution of that resistance in a panel of Canadian cultivars. A doubled haploid (DH) population was produced from the cross LMPG-6S/Harvest. The DH population was tested with race TRTTF, at the seedling stage. Of 92 DH progeny evaluated, 46 were resistant and 46 were susceptible which perfectly fit a 1:1 ratio indicating a single Sr gene was responsible for conferring resistance to TRTTF in Harvest. Mapping with single nucleotide polymorphism (SNP) and simple sequence repeat (SSR) markers placed the resistance gene distally on the chromosome 6AS genetic map, which corresponded to the location reported for Sr8. SSR marker gwm459 and 30 cosegregating SNP markers showed the closest linkage, mapping 2.2 cM proximal to the Sr gene. Gene Sr8a confers resistance to TRTTF and may account for the resistance in Harvest. Testing a panel of Canadian wheat cultivars with four SNP markers closely linked to resistance to TRTTF suggested that the resistance present in Harvest is present in many Canadian cultivars. Two of these SNP markers were also predictive of TRTTF resistance in a panel of 241 spring wheat lines from the United States, Canada, and Mexico.
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The proposed method of writing pedigrees of small grain varieties, a modification of the method proposed by G. A. Wiebe, is both simple and versatile. It can be used for either manual or automatic machine operations.
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Synopsis Lines of wheat that represent chromosome substitutions into Chinese from Hope, Thatcher, Red Egyptian, and Timstein, have been tested for resistance to a number of cultures of stem lust. Chromosomes VII and XVII from Hopt; III, XIII, and XIX from Thatcher; VI, XIII, and XX From Red Egyptian; X from Timstein; and XI from Chinese carry genes for resistance to one or more of the cultures.
Article
The inheritance of resistance to races 15B and 56 of stem rust was studied in the variety Khapstein which obtained its resistance from Khapli emmer. Khapstein was found to carry gene Sr7 which controls resistance to race 15B and two additional genes, one conditioning a type 2 reaction to race 56 and a 2+ – 3 reaction to race 15B, and a second controlling a striking, grey necrosis around pustules produced by race 56. The two have been designated Sr13 and Sr14 respectively.
Article
A corroded leaf mutation which was first reported by Sears (1954) was found in the variety Kurrachee. The present investigation includes a more detailed phenotypic description of this mutant. The expressivity of this mutation was more pronounced under greenhouse conditions than in the field. A monosomic analysis was carried out in which the Koga monosomics were crossed with the variety Kurrachee. The mutation behaved as a deletion and was located on chromosome 6D. To obtain normal green plants, more than four of the six homoeologous alleles on the chromosomes of group 6 had to be present. With only four or less wild-type alleles the mutant characteristic was always evident, no matter on which of the homoeologous chromosomes the particular alleles were present.
Article
Sr15, a new gene giving resistance to certain strains of the wheat stem rust organism has been found in several varieties including Norka and Thew. It is located on chromosome 7A (XI), and is closely linked with the genes controlling resistance to certain strains of the organisms causing wheat leaf rust and powdery mildew. By the use of Sr15 in conjunction with genes present in stocks previously described, it has been possible to subdivide standard race 21 of stem rust into 24 components. The significance of this in relation to sources of resistance used in breeding is discussed.
Association of homoeologous group 6 aneuploids with leaf necrosis in hexaploid wheat varieties
  • R Morris
  • J W Schmidt
MORRIS, R., SCHMIDT, J. W., and JOHNSON, V. A. (1970).-Association of homoeologous group 6 aneuploids with leaf necrosis in hexaploid wheat varieties. Wheat Inform. Servo 30, 6-7.
Resistance to Puccinia graminis tritici in Khapstein, 8 vulgare derivative of Khapli emmer
  • D S Atbw Al
ATBW AL, D. S., and WATSON, I. A. (1956).-Resistance to Puccinia graminis tritici in Khapstein, 8 vulgare derivative of Khapli emmer. Proc. Linn. Soc. N.S. W. 81, 71-7.
-Chromosome mapping with the aid of telocentrics
SEARS, E. R. (1954).-The aneuploids of common wheat. Res. Bull. Mo. Agric. Exp. Stn. No. 572. SEARS, E. R. (1966).-Chromosome mapping with the aid of telocentrics. Proc. 2nd Int. Wheat Genetics Symp. [Heredita8, Suppl. Vol. 2, pp. 370-81.]