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Relationships and position of the taxa of the subfamily Xiphisterinae in the system of the suborder Zoarcoidei (Perciformes)

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Analysis of the nucleotide sequences of mitochondrial and nuclear DNA genes was used to examine the relationships and position of the subfamily Xiphisterinae in the system of the suborder Zoarcoidei. This study showed the genetic heterogeneity of Xiphisterinae and the propriety of its division into two subfamilies: Xiphisterinae with the genera Xiphister and Phytichthys and Cebidichthyinae with the genera Cebidichthys, Dictyosoma, Esselenichthys, and Nivchia. The genetic differences between the two subfamilies were not less, but in some cases even greater than the differences between families within the suborder; therefore, they should be raised to the rank of a family, Xiphisteridae and Cebidichthyidae, and classified not within the superfamily Stichaeoidae but rather as independent taxa of the suborder Zoarcoidei.
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ISSN 10630740, Russian Journal of Marine Biology, 2013, Vol. 39, No. 4, pp. 276–286. © Pleiades Publishing, Ltd., 2013.
Original Russian Text © I.A. Chereshnev, O.A. Radchenko, A.V. Petrovskaya, 2013, published in Biologiya Morya.
276
INTRODUCTION
The subfamily Xiphisterinae sensu Makushok [1] is
within the family Stichaeidae and includes todate six
genera and nine species:
Xiphister mucosus, X. atropur
pureus, Phytichthys chirus, Cebidichthys violaceus,
Esselenichthys carli, E. laurae, Dictyosoma burgeri,
D. rubrimaculatum
, and
Nivchia makushoki.
The dis
tribution of the subfamily is amphiPacific: species of
the genera
Xiphister, Phytichthys, Cebidichthys
, and
Esselenichthys
are found in coastal waters of the north
eastern Pacific (the southeastern Bering Sea, the Gulf
of Alaska, and southward along the Pacific coast to
Central California); species of the genera
Dictyosoma
and
Nivchia
occur in the northwestern Pacific (basins
of the northern Yellow Sea and the Sea of Japan,
Pacific side of Honshu Island); a fossil taxon of
Niv
chia
was described from the LateMiocene deposits of
Sakhalin Island [1, 4, 12, 14, 18, 25, 26].
The genera
Xiphister
and
Phytichthys
were origi
nally classified within the family Xiphisteridae and the
genus
Cebidichthys
was placed in the family Cebidich
thyidae within the order Blenniiformes (Jordan, 1923,
cited after: [16], [21]). In addition, the genera
Neozo
arces
and
Zoarchias
were assigned by Jordan [16] to
the latter family because of the similar structure of the
dorsal fin consisting of “spinous” (only spines) and
following “soft” (soft rays) portions. However, Jordan
retained the genus
Dictyosoma
, which possesses a sim
ilar combined dorsal fin in the family Pholidae
1
.
In a substantial revision of stichaeids and related
fish families of the superfamily Stichaeoidae,
Makushok [1] recognized the subfamily Xiphisterinae
with the genera
Xiphister, Phytichthys, Cebidichthys
,
and
Dictyosoma
within the family Stichaeidae. He
noted the significant morphological heterogeneity of
the subfamily represented by two groups of closely
related genera
Xiphister
and
Phytichthys, Cebidichthys
,
and
Dictyosoma
. In the opinion of Makushok [1], the
morphological differences between these groups are
attributable not to the polyphyletic origin of the sub
family, but to the “progressively increasing specializa
tion” in the series
Dictyosoma–Phytichthys–Xiphister
leading to serious morphological changes of different
directionality but within one phyletic group.
Makushok [1] remarked that among the taxa of the
family Stichaeidae the subfamily Alectriinae is the
closest to the subfamily Xiphisterinae, while the sub
family Azygopterinae is the least close (it is only close
to the genera
Phytichthys
and
Xiphister
).
In the following revision based on cladistic analy
sis, Yatsu [25] proposed that the subfamily Xiphisteri
1
Jordan [16] included in the family Pholidae several genera from
the family Stichaeidae (
Chirolophis, Opisthocentrus, Plectobran
chus, Plagiogrammus, Pholidapus, Eulophias, Askoldia, Gymno
clinus, Alectrias, Alectridium
), but he remarked that Pholidae is a
quite diverse group and needs further subdivision.
ICHTHYOLOGY
Relationships and Position of the Taxa of the Subfamily Xiphisterinae
in the System of the Suborder Zoarcoidei (Perciformes)
I. A. Chereshnev, O. A. Radchenko, and A. V. Petrovskaya
Institute of Biological Problems of the North, Far East Branch, Russian Academy of Sciences, Magadan, 685000 Russia
email: radchenko@ibpn.ru
Received June 20, 2012
Abstract
—Analysis of the nucleotide sequences of mitochondrial and nuclear DNA genes was used to exam
ine the relationships and position of the subfamily Xiphisterinae in the system of the suborder Zoarcoidei.
This study showed the genetic heterogeneity of Xiphisterinae and the propriety of its division into two sub
families: Xiphisterinae with the genera
Xiphister
and
Phytichthys
and Cebidichthyinae with the genera
Cebid
ichthys
,
Dictyosoma
,
Esselenichthys
, and
Nivchia
. The genetic differences between the two subfamilies were
not less, but in some cases even greater than the differences between families within the suborder; therefore,
they should be raised to the rank of a family, Xiphisteridae and Cebidichthyidae, and classified not within the
superfamily Stichaeoidae but rather as independent taxa of the suborder Zoarcoidei.
Keywords
: Suborder Zoarcoidei, subfamily Xiphisterinae, mitochondrial DNA, COI, cytochrome b, 16S
rRNA, nuclear DNA, RNF213 gene, genetic and morphological divergence, taxonomic structure, status in
Zoarcoidei system
DOI:
10.1134/S1063074013040032
RUSSIAN JOURNAL OF MARINE BIOLOGY Vol. 39 No. 4 2013
RELATIONSHIPS AND POSITION OF THE TAXA OF THE SUBFAMILY XIPHISTERINAE 277
nae (in the volume accepted by Makushok [1]) be
divided into two subfamilies: Xiphisterinae with the
genera
Xiphister, Phytichthys
, and
Ernogrammus
(from
the subfamily Stichaeinae) and Cebidichthyinae with
the genera
Dictyosoma
and
Cebidichthys
. Later, the
genera
Esselenichthys
and
Nivchia
, which are close to
the genera
Cebidichthys
and
Dictyosoma
, were
included in the subfamily Xiphisterinae sensu
Makushok, 1958 [4, 12, 14].
Based on an unpublished work of Stoddard (1985)
(cited after [18]), Mecklenburg and Sheiko [18] sug
gested a different composition and structure of the
subfamily Xiphisterinae. They created two tribes:
Xiphisterini (genera
Xiphister, Phytichthys, Esselenich
thys, Dictyosoma, Cebidichthys
) and Alectriini (genera
Alectrias, Alectridium, Anoplarchus, Pseudalectrias
).
Nelson [19] agreed with the proposed system of the
Xiphisterinae; he included in it the nine listed genera
but without tribes until a more thorough taxonomic
treatment of the entire family Stichaeidae would be
performed along with obtaining evidence of the
monophyly of its subfamilies.
It should be noted that Mecklenburg and Sheiko
[18] reduced the number of subfamilies in the family
Stichaeidae from eight [1] to six. At the same time, a
new subfamily Neozoarcinae was introduced that
contained, along with the traditional genera
Neozo
arces
and
Zoarchias
[2], the genera
Azygopterus
and
Eulophias
, which Makushok [1] regarded as the type
for the monotypical subfamilies Azygopterinae and
Eulophiinae, while the subfamily Alectriinae was
placed in the subfamily Xiphisterinae in the rank of a
tribe.
The serious controversy concerning the taxonomic
structure and position of the subfamily Xiphisterinae
within the system of the family Stichaeidae [1, 18, 25]
necessitated the use of the moleculargenetic
approach. Analysis of the variability of the nucleotide
sequences of some mitochondrial and nuclear genes
has revealed the genetic heterogeneity of the subfamily
Xiphisterinae, thus justifying its subdivision into two
subfamilies, Xiphisterinae and Cebidichthyinae [10].
The level of genetic differences between Cebidichthy
inae and other subfamilies of the Stichaeidae is quite
significant. In this regard, the aim of the present study
is to elucidate the position, taxonomic status, and
relationships of the subfamilies Xiphisterinae and
Cebidichthyinae within the system of the suborder
Zoarcoidei.
MATERIALS AND METHODS
We used representatives of the families Stichaeidae,
Zoarcidae, Pholidae, Ptilichthyidae, Zaproridae,
Neozoarcidae, Cryptacanthodidae, Anarhichadidae,
and Bathymasteridae (Table 1). The Atlantic horse
mackerel
Trachurus trachurus
(family Carangidae,
Perciformes) was used as the outgroup [24].
Genomic DNA was isolated according to the stan
dard procedure [17]. Sequences of oligonucleotide
primers for the polymerase chain reaction and the
determination of nucleotide sequences of the mito
chondrial COI, cytochrome b, and 16S rRNA genes
and the nuclear RNF213 gene were given in previous
works [6–8].
Phylogenetic analysis of the nucleotide sequences
of the mitochondrial and nuclear genes was performed
separately. The data set for the mtDNA was formed of
six parts (the first nucleotide positions of the COI and
cytochrome b genes, the second nucleotide positions
of these genes, the third nucleotide positions com
bined, the 16S rRNA gene). For these parts, the fol
lowing optimal models of nucleotide substitutions
were selected using the Modeltest v3.7 [20] and Akaike
information criterion (AIC): GTR + G, TrNef + I +
G, F81, HKY, TIM + G, TVM + I + G. For the
RNF213 gene, the data set consisted of three parts
(the first, second, and third nucleotide positions), the
models selected were F81 + G, HKY + I, and K81.
The studied sample was enlarged by the GenBank data
for the nucleotide sequences of the mtDNA COI gene
of species of the subfamilies Xiphisterinae and Cebid
ichthyinae (Table 1). The nucleotide substitution
models used in the phylogenetic analysis of these data
were TIMef + G, F81, and TrN + G.
The analysis of phylogeny was performed using the
MrBayes v.3.1.2 program [22]. Three “heated” and
one “cold” chains were run for 10
6
generations and
every 100th tree was sampled. Out of 10001 generated
trees, the first 1001 were discarded. From the remain
ing trees that had stable estimates of the parameters of
nucleotide substitution models and likelihood (LnL),
we obtained consensus trees and estimates of the pos
terior probability of their branching.
RESULTS AND DISCUSSION
The nucleotide sequences of the COI, cytochrome
b, 16S rRNA, and RNF213 genes were placed in the
Genbank/NCBI database under the numbers listed in
Table 1. The length of the sequenced regions was 2044
base pairs (bp) for the mitochondrial genes and 630 bp
for the nuclear gene RNF213. In the studied mtDNA
genes, we found 632 variable and 532 phylogenetically
informative nucleotide positions, and 943 nucleotide
substitutions. The sequence of the RNF213 gene is
characterized by 91 polymorphic and 21 informative
nucleotide positions and 97 nucleotide substitutions.
The transition/transversion ratio was 2.7 : 1 for the
mtDNA genes and 1.9 : 1 for RNF213. Aminoacid
residue substitutions were found in the nucleotide
sequences of the mitochondrial and nuclear genes
coding for proteins: 11, 44, and 33 substitution muta
tions in the COI, cytochrome b, and RNF213 genes,
respectively.
278
RUSSIAN JOURNAL OF MARINE BIOLOGY Vol. 39 No. 4 2013
CHERESHNEV et al.
Table 1.
A list of the species that were used in this study
Systematic position Species (no. of specimen) Locality
No. in Genbank/NCBI
(genes COI/cyt. b/16S rRNA/RNF213)
Fam. Stichaeidae:
subfam. Stichaeinae
Stichaeuspunctatus
(1453) Sea of Okhotsk, Shantar Islands JN591552/JN591557/JN591562/JQ689662
subfam. Opisthocentrinae
Askoldia variegata
(1465) The same HQ873614/HQ873646/HQ873670/HQ873656
subfam. Lumpeninae
Leptoclinus maculatus
(1389) Western Kamchatka shelf HQ873611/HQ873643/HQ873667/HQ873652
Acantholumpenus mackayi
(1436) Sea of Okhotsk, Ulbanskiy Bay HQ873612/HQ873644/HQ873668/HQ873653
subfam. Chirolophinae
Chirolophis japonicus
(1258) Kunashir Island HQ873616/HQ873648/HQ896818/HQ873657
subfam. Alectriinae
Alectrias alectrolophus
(1440) Sea of Okhotsk, Shantar Islands JN591553/JN591558/JN591563/JQ417856
Anoplarchus insignis
(1481) USA, Washington State, San Juan Island JQ417843/JQ417847/JQ417851/JQ417857
subfam. Xiphisterinae
Xiphister atropurpureus
(1483) The same JN591554/JN591559/JN591564/JQ417858
Xiphister mucosus
* Canada, British Columbia FJ165467/–/–/–
subfam. Cebidichthyinae
Dictyosoma burgeri
(1492) Japan JQ417844/JQ417848/JQ417852/JQ417859
D. burgeri
* No data JF709889/–/–/–
D. rubrimaculatum
* No data JF709890/–/–/–
Cebidichthys violaceus
* USA, California GU440267/–/–/–
Esselenichthys carli
* The same GU440319/–/–/–
Fam. Zoarcidae:
subfam. Lycozoarcinae
Lycozoarces regani
(1323) Northern Sea of Japan FJ932601/FJ932613/FJ887743/HQ896821
subfam. Zoarcinae
Zoarces viviparus
(493) Gulf of Finland, Baltic Sea EF208062/FJ744403/FJ798756/JN209949
subfam. Lycodinae
Lycodes raridens
(202) Sea of Okhotsh, off Tauiskaya Bay EU380264/EU404178/EU741757/HQ896820
subfam. Gymnelinae
Hadropareia middendorffii
(300) Sea of Okhotsk, Nagaev Bay HM217160/HM217165/HM217169/HM217151
Leptostichaeus pumilus
(1375) Sea of Japan, Peter the Great Bay JN591551/JN591556/JN591561/JQ689661
Fam. Neozoarcidae
Neozoarces pulcher
(1187) The same F J932603/FJ932615/F J887745/ HQ896822
Fam. Anarhichadidae
Anarhichas lupus
(1384) Northern Sea, Sweden HQ873609/HQ873641/HQ873665/HQ896823
Fam. Zaproridae
Zaprora silenus
(1185) Western Kamchatka shelf FJ932606/FJ932618/FJ887748/HQ873659
Fam. Ptilichthyidae
Ptilichthys goodei
(1186) Sea of Okhotsk, Talan Island FJ932605/FJ932617/FJ887747/HQ873660
Fam. Pholidae
Pholis picta
(1281) Kunashir Island HM051084/HM051096/HM051097/JN816391
Apodichthysflavidus
(1475) USA, Washington State, San Juan Island JN591555/JN591560/JN591565/ JN816397
Rhodymenichthys dolichogaster
(471) Tauiskaya Bay, Nedorazumeniya Island HM051088/HM051091/HM051102/HM217158
Xererpes fucorum
(1477) USA, Washington State, San Juan Island JN816386/JN816388/JN816390/JN816399
Fam. Cryptacanthodidae
Cryptacanthodes bergi
(1468) Sea of Japan, Peter the Great Bay HQ873618/HQ873650/HQ873663/HQ873662
Fam. Bathymasteridae
Bathymaster derjugini
(331) The same EU741725/EU741751/EU741792/HM217159
Fam. Carangidae
Trachurus trachurus
* Ireland AB108498 (complete mt genome)/EU638269
Note: * Data on the gene nucleotide sequences were derived from GenBank.
RUSSIAN JOURNAL OF MARINE BIOLOGY Vol. 39 No. 4 2013
RELATIONSHIPS AND POSITION OF THE TAXA OF THE SUBFAMILY XIPHISTERINAE 279
As was noted above, a previous study on the taxo
nomic structure and phylogenetic relationships of the
subfamily Xiphisterinae within the system of the
stichaeid fishes revealed quite significant genetic dif
ferences between the genera
Xiphister
and
Dictyosoma
(13.7% for mtDNA and 2.2% for nuclear DNA) that
are comparable with the differences between subfami
lies in the families Stichaeidae and Zoarcidae [10]. In
phylogenetic trees of stichaeid and zoarcid fishes
([10], Figs. 1–3),
Xiphister
and
Dictyosoma
formed no
shared clusters and, on the contrary, were highly sepa
rated topologically. The genus Xiphister is closer to the
family Stichaeidae than the genus
Dictyosoma
: the
genetic difference of the former genus from the
stichaeids is 9.9–13.2% (on average, 12%), while this
difference for the latter genus is markedly greater,
12.7–15.1 (14)%. These genera fairly significantly dif
fer from taxa of the subfamily Alectriinae:
Xiphister
,
12.1% for the mtDNA genes and 2% for the nuclear
gene RNF213;
Dictyosoma
, 14.8 and 2.8%, respec
Pholis picta
(1281)
Apodichthys flavidus
(1475)
Rhodymenichthys dolichogaster
(471)
Ptilichthys goodei
(1186)
Askoldia variegata
(1465)
Zaprora silenus
(1185)
Leptoclinus maculatus
(1389)
0.03
Trachurus trachurus
*
Bathymaster deriugini
(331)
Bathymasteride
Dictyosoma burgeri
(1492)
Cebidichthyidae
Anarhichadidae
Anarhichas lupus
(1384)
Neozoarces pulcher
(1187)
Leptostichaeus pumilus
(1375)
Hadropareia middendorffii
(300)
Neozoarcide
Zoarcidae
Zoarces viviparus
(493)
Lycozoarces regani
(1323)
Lycodes raridens
(1202)
Chirolophis japonicus
(1258)
Chirolophinae,
Stichaeidae
Pholidae
Xiphisterine
Stichaeidae
Xererpes fucorum
(1477)
Xiphister atropupureus
(1483)
Alectrias alectrolophus
(1440)
Stichaeus punctatus
(1453)
Alectriinae
Stichaeinae
Cryptacanthodidae
Cryptacantodes bergi
(1468)
Lumpeninae,
Stichaeidae
Zoproridae
Opisthocentrinae,
Stichaeidae
Ptilichthyidae
100
52
78
94
89
70
100
100
100
100
100
100
86
99
91
100
100
67
Pholidae
Fig. 1.
A Bayesian tree of haplotypes of the superfamily Stichaeoidae and the family Zoarcidae inferred from the nucleotide
sequences of the mitochondrial COI, cytochrome b, 16S rRNA genes. Tree parameters: LnL = –15680; A : C : G : T = 0.247 :
0.286 : 0.194 : 0.272;
α
parameter of gamma distribution is 0.147. The numerals at the base of clusters are estimates of the stability
of branching nodes in 50% Bayesian consensus trees (%).
280
RUSSIAN JOURNAL OF MARINE BIOLOGY Vol. 39 No. 4 2013
CHERESHNEV et al.
tively. The latter genus is in a basal position in the phy
logenetic trees ([10], Figs. 1 and 2), being distant from
both the subfamily Alectriinae and the genus
Xiphister
.
The above results and the analysis of a set of the most
informative morphological features confirmed the
Yatsu’s [25] scheme of division of the subfamily
Xiphisterinae into two subfamilies: Xiphisterinae with
the genera
Xiphister
and
Phytichthys
and Cebidichthy
inae with the genera
Cebidichthys
and
Dictyosoma
, to
which the genera
Esselenichthys
[12, 14] and
Nivchia
[4] were assigned later. The same genetic studies do
not allow the inclusion of the genus
Ernogrammus
in
the subfamily Xiphisterinae, because the genera
Xiphister
and
Ernogrammus
are distant in the phyloge
netic trees and the level of divergence between them is
comparable with the differences between subfamilies
in the family Stichaeidae [10].
MrBayes (v.3.12) phylogenetic trees inferred from
the nucleotide sequences of mitochondrial and
nuclear genome regions show the position of the stud
ied taxa of the suborder Zoarcoidei (Figs. 1–3).
The consensus tree built from the three mtDNA
genes (Fig. 1) consisted of three large clusters. The
external cluster is composed of the haplotypes of taxa
of the family Pholidae; the divergence values between
their mtDNA were not high, 9.6–11.2 (10.6)% (Table
2). Microclusters of the family Ptilichthyidae and the
subfamily Opisthocentrinae (genus
Askoldia
) adjoin
Zoares viviparus
(493)
Lycodes raridens
(202)
Lycozoarces regani
(1323)
Hadropareia middendorffii
(300)
Neozoarces pulchers
(1187)
87
94
92
71
89
76
Anarhichas lupus
(1384)
Pholis picta
(1281)
Apodichthys flavidus
(1475)
Rhodymenichthys dolichogaster
(471)
Leptostichaeus pumilus
(1375)
Zaprora silenus
(1185)
Ptilichthys goodei
(1186)
Stichaeus punctatus
(1453)
Askoldia variegata
(1465)
Leptoclinus maculatus
(1389)
Chirolophis japonicus
(1258)
Alectrias alectrolophus
(1440)
Xiphister atropurpureus
(1483)
Xererpes fucorum
(1477)
Cryptacantodes bergi
(1468)
Dictyosoma burgeri
(1492)
Bathymaster derjugini
(331)
Trachurus trachurus*
0.02
Fig. 2.
A Bayesian tree of the superfamily Stichaeoidae and the family Zoarcidae inferred from the nucleotide sequences of the
nuclear RNF213 gene. Tree parameters: LnL = –1913.866; A : C : G : T = 0.288 : 0.215 : 0.256 : 0.241; the
α
parameter of the
gamma distribution is 0.114.
RUSSIAN JOURNAL OF MARINE BIOLOGY Vol. 39 No. 4 2013
RELATIONSHIPS AND POSITION OF THE TAXA OF THE SUBFAMILY XIPHISTERINAE 281
Lycodes raridens
(202)
Lucozoarces regani
(1323)
Hadropareia middendorffii
(300)
Zoarces viviparus
(493)
Neozoarces pulcher
(1187)
Leptostichaeus pumilus
(1375)
Anarhichas lupus
(1384)
Alectrias alectrolophus
(1440)
Anoplarchus insignis
(1481)
Chirolophis japonicus
(1258)
Stichaeus punctatus
(1453)
Xererpes fucorum
(1477)
Xiphister atropurpureus
(1483)
63
55
54
100
67
96
97
53
100
99
100
100
100
100
100
100
Xiphister mucosus
*
80
Cebidichthys violaceus
*
Pholis picta
(1281)
Rhodymenichthys dolichogaster
(471)
Apodichthys flavidus
(1475)
Ptilichthys goodei
(1186)
Askildia variegata
(1465)
Leptoclinus maculatus
(1389)
Acantholumpenus mackayi
(1436)
Zaprora silenus
(1185)
Cryptacantodes bergi
(1468)
Dictyosoma burgeri
(1492)
Dictyosoma burgeri
*
Dictyosoma rubrimaculatum
*
Esselenichthys carli
*
Bathymaster derjugini
(331)
Trachurus trachurus*
0.02
Fig. 3.
A Bayesian tree of haplotypes of the superfamily Stichaeoidae and the family Zoarcidae inferred from the nucleotide
sequence of the mitochondrial COI gene. Tree parameters: LnL = –5279.935; A : C : G : T = 0.234 : 0.283 : 0.172 : 0.311; the
α
parameter of the gamma distribution is 0.151. *Data on gene nucleotide sequences were derived from GenBank.
this group. The genetic differences between the taxa in
these microclusters vary in the range of 9.6–11.9
(10.9)%. A somewhat lower level of divergence is
observed in the next microcluster, which combined
species of distant families such as Zaproridae,
Stichaeidae (subfamily Lumpeninae), and Cryptacan
thodidae, 9.3–10.3 (9.6)%. In the central cluster,
which only includes taxa of the families Stichaeidae
(subfamilies Stichaeinae, Alectriinae, Xiphisterinae,
and Chirolophinae) and Pholidae (genus
Xererpes
),
the degree of genetic differences is the greatest, 11.2–
12.7 (12.1)%. Remarkably, the subfamily Chirolophi
nae, which Makushok [1] considers to be close to the
subfamily Stichaeinae, is in an external position and
shows the greatest differences from other taxa within
this cluster, 12.5%.
It is significant that the two clusters form a macro
cluster with a fairly high support (89%), whose taxo
nomic volume corresponds to the superfamily
282
RUSSIAN JOURNAL OF MARINE BIOLOGY Vol. 39 No. 4 2013
CHERESHNEV et al.
Table 2.
Divergence values (in %) between the nucleotide sequences of the mtDNA genes (below the diagonal) and the RNF213 gene (above the diagonal)
Species 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23
1.
Leptostichaeus pumilus
(1375) 3.4 3.2 2.7 2.3 2.9 1.8 2.3 1.9 1.8 1.9 1.8 2.1 2.8 2.6 2.4 2.1 2.1 2.1 2.6 1.9 3.2 12.6
2.
Zoarces viviparus
(493) 12.5 2.3 2.3 1.9 3.3 2.3 2.8 2.4 2.6 3.1 2.8 3.1 3.4 3.2 3.2 2.6 2.6 2.6 3.1 2.7 3.7 12.8
3.
Lycodes raridens
(202) 11.8 10.4 2.6 1.9 3.2 2.3 2.8 2.4 2.4 3.1 2.6 2.8 2.8 2.9 3.2 2.6 2.6 2.6 3.1 2.7 3.4 12.4
4.
Lycozoarces regani
(1323) 12.6 9.8 8.9 1.6 2.6 1.6 2.4 2.1 2.3 2.4 2.4 2.8 3.1 2.9 2.4 2.3 2.3 2.3 2.1 2.4 3.1 12.2
5.
Hadropareia middendorffii
(300) 12.6 10.5 10.2 10.0 2.3 1.1 1.8 1.4 1.6 2.2 1.6 2.1 2.4 2.3 2.3 1.6 1.6 1.6 2.1 1.6 2.7 11.8
6.
Neozoarces pulcher
(1187) 12.4 11.0 11.6 12.5 11.6 1.6 2.3 1.9 2.1 2.6 2.3 2.6 3.3 2.8 2.8 2.1 2.1 2.1 2.6 2.3 3.1 12.2
7.
Anarhichas lupus
(1384) 11.4 10.8 9.2 9.6 10.6 10.8 1.5 1.1 1.3 1.8 1.4 1.8 2.3 1.9 1.9 1.3 1.3 1.3 1.8 1.3 2.4 11.7
8.
Zaprora silenus
(1185) 13.6 13.7 13.2 13.1 13.9 12.0 11.4 1.0 1.1 1.6 1.3 1.6 2.3 1.8 1.8 1.1 1.1 1.1 1.9 1.3 2.3 11.1
9.
Ptilichthys goodei
(1186) 13.6 12.9 13.3 12.9 13.3 14.1 11.9 13.3 0.8 1.3 1.0 1.3 1.9 1.4 1.4 0.8 0.8 0.8 1.6 1.0 1.9 11.0
10.
Stichaeuspunctatus
(1453) 14.1 13.4 14.3 13.9 14.8 13.6 11.9 12.1 13.7 1.1 0.5 1.0 1.6 1.1 1.6 1.0 1.0 0.6 1.4 1.1 2.1 10.9
11.
Askoldia variegata
(1465) 13.5 13.1 13.5 13.9 14.4 12.2 12.7 11.4 11.9 11.5 1.3 1.3 1.6 1.8 1.8 1.4 1.4 1.1 1.9 1.6 2.6 11.3
12.
Leptoclinus maculatus
(1389) 14.0 12.9 12.8 12.9 13.5 13.2 11.6 9.3 12.7 12.3 11.6 1.1 1.6 1.3 1.8 1.1 1.1 0.8 1.6 1.1 2.3 11.1
13.
Chirolophisjaponicus
(1258) 13.8 14.2 14.6 14.3 15.1 14.6 12.1 12.6 13.1 12.5 13.8 12.9 1.6 1.4 2.1 1.4 1.4 1.1 1.9 1.6 2.6 11.3
14.
Alectrias alectrolophus
(1440) 14.1 14.8 14.0 14.7 14.7 14.0 12.9 12.4 14.7 11.2 12.6 12.7 12.5 2.1 2.6 2.1 2.1 1.8 2.6 2.3 2.9 11.9
15.
Xiphister atropurpureus
(1483) 13.8 13.7 13.4 12.5 13.1 13.7 11.4 11.6 14.0 11.9 13.1 12.5 12.4 12.7 2.3 1.6 1.6 1.3 2.1 1.8 2.7 11.7
16.
Dictyosoma burgeri
(1492) 14.9 14.6 14.0 14.9 15.1 14.0 13.4 13.9 14.9 14.1 13.3 13.4 15.0 14.5 13.7 1.6 1.6 1.5 2.4 1.8 2.6 11.7
17.
Pholis picta
(1281) 14.6 14.3 14.7 14.5 14.5 14.4 13.6 13.0 11.3 14.1 11.8 12.9 14.0 13.7 14.2 15.0 0.3 0.6 1.8 0.8 1.9 10.7
18.
Apodichthysflavidus
(1475) 15.4 15.5 15.6 16.3 16.0 14.0 14.3 13.6 13.9 14.7 13.5 14.5 14.5 15.4 14.2 13.9 11.2 0.6 1.8 1.1 1.9 10.9
19.
Rhodymenichthys dolichogaster
(471) 13.8 14.0 13.4 13.5 13.6 13.0 11.7 10.1 12.0 12.3 11.2 10.7 12.9 13.0 12.9 14.0 9.6 11.0 1.5 1.1 2.1 10.6
20.
Xererpes fucorum
(1477) 13.8 14.5 14.2 14.3 13.6 14.9 12.4 13.5 13.8 12.1 13.3 12.8 12.5 12.4 11.1 15.4 14.5 14.9 13.0 1.9 2.9 10.9
21.
Cryptacanthodes bergi
(1468) 13.3 12.6 13.7 13.0 13.4 12.6 11.3 9.6 12.3 11.6 10.7 10.3 13.0 12.6 12.0 13.2 13.0 14.0 11.9 12.5 2.3 11.3
22.
Bathymaster derjugini
(331) 13.3 14.5 13.5 13.6 13.8 14.0 11.4 11.6 12.8 13.0 12.1 12.2 13.1 12.7 13.1 14.3 13.8 14.1 11.3 13.4 11.2 10.9
23.
Trachurus trachurus
22.5 22.0 22.0 24.4 20.9 20.1 22.5 21.0 22.8 22.4 21.2 22.0 22.4 21.7 21.4 21.9 21.4 23.1 22.1 22.2 20.8 20.9
RUSSIAN JOURNAL OF MARINE BIOLOGY Vol. 39 No. 4 2013
RELATIONSHIPS AND POSITION OF THE TAXA OF THE SUBFAMILY XIPHISTERINAE 283
Stichaeoidae sensu Makushok [1]. The exceptions are
the families Zaproridae and Cryptacanthodidae
(present in the macrocluster), which are currently
considered to be independent families in the suborder
Zoarcoidei [11, 13], and the family Anarhichadidae
(absent in the macrocluster), which was placed by
Makushok [1] in the superfamily Stichaeoidae.
The third cluster of haplotypes is in an external
position with respect to the first two clusters and con
sists of the subfamilies of the family Zoarcidae and
groups close to them, viz., the genera
Leptostichaeus,
Neozoarces
, and
Anarhichas
. The values of divergence
between the mtDNA of the subfamilies of the Zoar
cidae were the smallest in all the compared groups,
8.9–10.4 (9.7)%. The overall level of genetic differ
ences in this cluster that includes the families Zoar
cidae, Neozoarcidae, Anarhichadidae, and the genus
Leptostichaeus
was 8.9–12.6 (10.8)%.
The haplotype of
Dictyosoma burger
is external to
all three clusters; it differs greatly from the rest, viz., by
13.2–15.4 (14.3)%, but most significantly from
Xerer
pes fucorum
(Pholidae),
Ptilichthys goodie
(Ptilichthy
idae),
Leptostichaeus pumilus, Alectrias alectrolophus
(Alectriinae), and from the family Zoarcidae as a
whole (Table 2).
Interestingly, the taxa of the Zoarcoidei that have
the combined dorsal fin of “spinous” and “soft” por
tions (genera
Neozoarces, Ptilichthys
, and
Dictyo
soma
), genetically differ from one another to a greater
extent than most families in the suborder, 14.0–14.9
(14.3)% for mtDNA. The genetic differences suggest
that the combined dorsal fin in the zoarcoid taxa
appeared independently (convergently) and on a dif
ferent genetic basis. We probably should agree with
Makushok [1] in that such a structure of the dorsal fin
is a primitive state in the superfamily Stichaeoidae.
This is confirmed by an analogous structure of the dor
sal fin in the fossil genus
Nivchia
[4]. Evidently, such a
prominent morphological feature as the longitudinal
skin ridge on the head top in species of the subfamily
Alectriinae and the genera
Neozoarces, Cebidichthys
,
and
Dictyosoma
is also of a convergent origin. It is
quite possible that the above morphological peculiarity
was determined by the directional evolution of these
fish groups that appeared in the coastal emergent zone
of seas of the northern Pacific [1, 2].
In the consensus phylogenetic tree inferred from
the data on the nuclear RNF213 gene nucleotide
sequences (Fig. 2), clusters formed by taxa of the fam
ily Zoarcidae and close groups are noteworthy (
Neozo
arces, Anarhichas
), as well as the family Pholidae,
which repeat the “mitochondrial” clusters with the
same fish groups (Fig. 1). This is indicative of the high
stability and significance of the clustering of these
taxa. Other fish groups do not form any clusters and
are equally distant topologically from one another.
However, by the level of genetic differences (Table 2),
Bathymaster derjugini
, which belongs to the most
primitive zoarcoid family Bathymasteridae [11], dif
fered most significantly from all (2.6%, on average).
Taxa of the family Zoarcidae and the genus
Neozoarces
(on average, 2.5%), the genera
Leptostichaeus
(2.4%)
and
Alectrias
(2.3%) also differed fairly greatly. The
lowest values of genetic divergence in the RNF213
gene were found for the genus
Ptilichthys
(1.4%),
which is the most morphologically specialized among
the Zoarcoidei [13]. The highly specialized groups
Anarhichas, Zaprora
, and
Cryptacanthodes
showed, on
an average, no more than 1.8% differences; however,
in less specialized Stichaeidae and Pholidae the value
of genetic differences was still lower, 1.6%.
The phylogenetic tree that was inferred from the
nucleotide sequences of the COI gene and the Gen
Bankderived data for other species showed more
clearly the phylogenetic relationships between the taxa
(Fig. 3). A still high level of stability is exhibited by the
haplotype clusters of the Zoarcidae taxa and groups
close to them, as well as the taxa of the family Phol
idae, although in the former cluster the relationships
of the genera
Hadropareia
and
Zoarces
changed
towards
Neozoarces
and
Leptostichaeus
, while in the
latter cluster there was a change in the position of the
genera
Rhodymenichthys
and
Apodichthys
.
Microclus
ters of closely related species and genera were formed:
Alectrias
and
Anoplarchus
from the subfamily Alectrii
nae,
Xiphister atropurpureus
and
X. mucosus
from the
subfamily Xiphisterinae, and
Leptoclinus
and
Acan
tholumpenus
from the subfamily Lumpeninae.
The separation of the taxa of the subfamily Cebid
ichthyinae is most marked. They formed their own
cluster that is markedly far from Xiphisterinae,
Stichaeidae, Pholidae, and Zoarcidae. In the Cebid
ichthyinae cluster, species of the genus
Dictyosoma
that live at the Asiatic coast of the Pacific are closer to
one another than to the North American
Cebidichthys
violaceus
and
Esselenichthys carli
, which agrees with
morphological data. Thus, the genus
Dictyosoma
has a
fairly complicated system of body sensory canals, in
which the longitudinal canals of the upper and lower
sides of the body are connected by transverse anasto
moses that pass onto the canal of the ventral side ([3],
Figs. 6, 7; [25], Fig. 1; [15], p. 1049).
Cebidichthys
and
Esselenichthys
have one (in the former) or two to three
(in the latter) simple canals that are not connected by
anastomoses ([3], Figs. 6, 7; [25], Fig. 1; [14], Figs. 1,
2, 5). Since the body canals in fossil
Nivchia
are
arranged in a similar way to
Dictyosoma
, i.e., there is
an anastomotic network [4], this structure of the body
canals can be regarded as an ancestor state. In con
trast, their reduction and simplification, as in
Cebid
ichthys
and
Esselenichthys
, should be considered as a
derivative state that emerged in the course of evolution
of the subfamily in the ancestral form of these genera,
which is close to
Dictyosoma
and
Nivchia
, during their
expansion from the Sea of Japan area toward the
shores of North America. A similar process also
occurred in some head canals of the sensory system: in
284
RUSSIAN JOURNAL OF MARINE BIOLOGY Vol. 39 No. 4 2013
CHERESHNEV et al.
Cebidichthys
and
Esselenichthys
the occipital commis
sure is not connected with the upper body canal via a
firstorder canal (in Neelov’s [5] terminology); in
Esselenichthys
the number of pores in the inner rows of
the suborbital and postorbital canals is reduced; in
Cebidichthys
the inner pores disappear altogether ([1,
3], Fig. 6; [26], Fig. 2; [25], Fig. 3; [14], Fig. 2).
The paleontological and morphological data defi
nitely suggest that the genus
Dictyosoma
is the most
ancient in the subfamily Cebidichthyinae and the sub
family itself is a welldefined group of zoarcoid fish
taxa. In this regard, the subfamily should be elevated in
rank to a family, Cebidichthyidae, within the suborder
Zoarcoidei but not within the superfamily Stichae
oidae. Nazarkin [4] proposed that some morphologi
cal peculiarities of the “soft rayed” members of
Xiphisterinae (= Cebidichthyidae) be considered as
synapomorphies. These are the combined structure of
the dorsal fin, as well as the connection of the termi
nation of the dorsal and anal fins with the caudal fin
(unique to the superfamily Stichaeoidae), in which the
lengthened rays of these unpaired fins reach to and
overlap the middle of the marginal rays of the caudal
fin, while the fairly deep notches are retained ([1],
(a) (b)
(c) (d)
Fig. 4.
The head sensory canals in
Bathymaster caeruleofasciatus
((a), view from top and side),
Xiphister mucosus
((b), view from
top and side),
Cebidichthys violaceus
(c) and
Dictyosoma burger
(d). (a), from [23], Fig. 8; (b–d), from [25], Fig. 3.
RUSSIAN JOURNAL OF MARINE BIOLOGY Vol. 39 No. 4 2013
RELATIONSHIPS AND POSITION OF THE TAXA OF THE SUBFAMILY XIPHISTERINAE 285
Fig. 20d). It should be noted that in the genera
Xiphis
ter
and
Phytichthys
(the subfamily Xiphisterinae) the
membranes of the dorsal and anal fins are continuous
with the base of the caudal fin, without notches,
reaching to the beginning of its marginal rays, which is
also characteristic of some Stichaeinae, Alectriinae,
and most Pholidae ([1], Fig. 20
е–h
).
The genera
Phytichthys
and
Xiphister
also have a
number of synapomorphies. In particular, these are
the unique structure of the head canals of the sensory
system, in which the suborbital canal gives rise to three
(
Xiphister
) or four (
Phytichthys
) long firstorder cheek
canals surrounded throughout their length by ringlike
scales; and as the presence of a very long central pos
terior firstorder canal of the occipital commissure
with several secondorder canals (Fig. 4) ([1], Figs. 48,
49; [25], Figs. 3, 5). This type of structure of the ceph
alic sensory system is not found in the superfamily
Stichaeoidae, in the families Zoarcidae, Neozoar
cidae, Cryptacanthodidae, and Scytalinidae, i.e., in
virtually no taxa of the suborder Zoarcoidei [1–3, 11,
14, 25, and others]. Only representatives of the subor
der’s most primitive family Bathymasteridae have
cheek branches of the suborbital canal, which are
developed to varying degrees (but less than in
Phytich
thys
and
Xiphister
), and the lengthened central poste
rior firstorder canal of the occipital commissure with
short secondorder canals (Fig. 4a) [9, 23]. However,
in contrast to
Phytichthys
and
Xiphister
, these canals in
bathymasterids are skin tubes devoid of scales. We note
that the structure plan of the head sensory system in
the taxa of the family Cebidichthyidae is typical of the
family Stichaeidae (Fig. 4c, 4d) ([1], Fig. 48; [25],
Figs. 3, 5; [14], Fig. 2). The unique structural pecu
liarities of the head canals in
Phytichthys
and
Xiphister
should most likely be regarded as a plesiomorphic state
convergent to that in Bathymasteridae and inherited
by them from different ancestral forms. Another syna
pomorphy in Xiphisterinae is the joining of strongly
developed chewing muscles of both sides of the head
on the root of the skull ([1], Fig. 67; [25]), which
among other taxa of the stichaeoid and zoarcoid fishes
is only found in the highly morphologically specialized
monotypic subfamily Azigopterinae (family
Stichaeidae). However, as was noted by Makushok [1],
this anatomical feature developed independently in
Xiphisterinae and Azygopterinae.
Unlike the genus
Dictyosoma
, the genus
Xiphister
in
all phylogenetic trees is either within or in the direct
vicinity of the cluster of taxa of the superfamily
Stichaeoidae. In connection with this, the subfamily
Xiphisterinae can be elevated to the rank of a family
but within the superfamily Stichaeoidae. This is also
supported by the comparative morphological data that
fairly definitely indicate the phylogenetic separation
of this group of stichaeoid fishes [1–3, 10, 14, 25].
However, another taxonomic solution can exist, such
as a revision of the existing system of the superfamily
Stichaeoidae proposed by Makushok [1]. Judging
from the position of taxa in the phylogenetic trees
(Fig. 1, 3), members of the superfamily form no stable
groupings strictly relating to particular subfamilies and
families of the Stichaeoidae (unlike, for example, the
families Zoarcidae and Pholidae). The clusters can
include taxa from different phylogenetically distant
subfamilies and even families. At the same time, the
family Anarhichadidae, which was included by
Makushok [1] in the superfamily Stichaeoidae, is con
sistently present in the cluster of the families Zoar
cidae and Neozoarcidae, while the family Zaproridae
is clustered with the subfamily Lumpeninae (family
Stichaeidae) and the family Cryptacanthodidae
(Fig. 1). The superfamily Stichaeoidae should proba
bly be abandoned and its constituent families should
be regarded as independent taxa of the suborder Zoar
coidei [11, 13, 19].
ACKNOWLEDGMENTS
This work was supported by grants from the Rus
sian Foundation for Basic Research (no. 1104
00004) and from the RFBR/FEB RAS (no. 1104
98504). The authors are sincerely grateful to Prof.
Theodor Pietsch (University of Washington, United
States) for help with the materials for the genetic study
of the genera
Anoplarchus
and
Xiphister
and to
M.V. Nazarkin (Zoological Institute, Russian Acad
emy of Sciences) who kindly helped with the materials
of the genus
Dictyosoma
.
REFERENCES
1. Makushok, V.M., Morphological bases of stichaeids
and related fish families (Stichaeoidae, Blennioidei,
Pisces),
Tr. Zool. Inst. Akad. Nauk SSSR
, 1958, vol. 25,
pp. 3–129.
2. Makushok, V.M., The group Neozoarcinae and its
position in the system (Zoarcidae, Blennioidei, Pisces),
Tr. Inst. Okeanol. Akad. Nauk SSSR,
1961, vol. 63,
pp. 198–224.
3. Makushok, V.M., Some peculiarities of the structure of
the sensory system of northern blenniids (Stichaeoidae,
Blennoidei, Pisces),
Tr. Inst. Okeanol. Akad. Nauk
SSSR
, 1961, vol. 43, pp. 226–269.
4. Nazarkin, M.V., New stichaeid fish (Stichaeidae, Per
ciformes) from the Miocene of Sakhalin Island,
Vopr.
Ikhtiol.,
1998, vol. 38, no. 3, pp. 293–306.
5. Neelov, A.V.,
Seismosensornaya sistema i klassifikatsiya
kerchakovykh ryb
(The Sensory System and Classifica
tion of Cottid Fishes), Leningrad: Nauka, 1979.
6. Radchenko, O.A., Chereshnev, I.A., and
Petrovskaya, A.V., Phylogenetic relations in the family
pholidae (Perciformes: Zoarcoidei) based on genetic
and morphological data
, J. Ichthyol.
, 2009, vol. 50,
no. 9, pp. 728–739.
7. Radchenko, O.A., Chereshnev, I.A., Petrovskaya, A.V.,
and Balanov, A.A., Molecular systematics and phylog
eny of fishes of the suborder Zoarcoidei,
Vestn.
286
RUSSIAN JOURNAL OF MARINE BIOLOGY Vol. 39 No. 4 2013
CHERESHNEV et al.
Dal’nevost. Otd. Ross. Akad. Nauk
, 2009, no. 3, pp. 40–
47.
8. Radchenko, O.A., Chereshnev, I.A., and
Petrovskaya, A.V., New data on the phylogenetic rela
tionships of the taxa of the subfamily Gymnelinae
(Zoarcidae) inferred from mitochondrial and nuclear
DNA analyses,
Vestn. Sev. Nauch. Tsentr Ross. Akad.
Nauk
, 2010, no. 4, pp. 80–85.
9. Chereshnev, I.A., The first finding of
Bathymaster der
jugini
(Bathymasteridae) in Tauiskaya Inlet (the north
ern Sea of Okhotsk),
Vopr. Ikhtiol.
, 2003, vol. 43, no. 5,
pp. 660–666.
10. Chereshnev, I.A., Radchenko, O.A., and
Petrovskaya, A.V., Taxonomic structure of the subfamily
Xiphisterinae and its position within the system of
stichaeid fishes (Stichaeidae, Zoarcoidei),
Vestn. Sev.
Nauch. Tsentr Ross. Akad. Nauk
, 2012, no. 3, pp. 90–
100.
11. Anderson, M.E., Systematics and osteology of the
Zoarcidae (Teleostei: Perciformes),
Ichthyol. Bull.
J.L.B. Smith Inst. Ichthyol.,
1994, no. 60, pp. 1–120.
12. Anderson, M.E.,
Esselenichthys
: a new replacement
name for
Esselenia
Follet and Anderson, 1990, junior
homonym of
Esselenia
Hebard, 1920 (Orthoptera),
Copeia
, 2003, no. 2, p. 414.
13. Anderson, M.E., Suborder: Zoarcoidei (eelpouts and
relatives), in
Grzimek’s Animal Life Encyclopedia
, vol. 5:
Fishes II
, Farmington Hills, Michigan, USA: The Gale
Group, 2003, pp. 309–320.
14. Follett, W.I. and Anderson, M.E.,
Esselenia
, a new
genus of pricklebacks (Teleostei: Stichaeidae), with two
new species from California and Baja California Norte,
Copeia
, 1990, no. 1, pp. 147–163.
15. Hatooka, K., Fam.: Stichaeidae,
Fishes of Japan with
Pictorial Keys of the Species
, Nakabo, T., Ed., Tokyo:
Tokai Univ. Press, 2002, vol. 2, pp. 1046–1054.
16. Jordan, D.S.,
The Genera of Fishes and a Classification
of Fishes
, Stanford, California: Stanford Univ. Press,
1963.
17. Maniatis, T., Fritsch, E.F., and Sambrook, J.,
Molecu
lar Cloning, a Laboratory Manual
, New York: Cold
Spring Harbor Laboratory, 1982.
18. Mecklenburg, C.W. and Sheiko, B.A., Family
Stichaeidae Gill, 1864—pricklebacks,
Calif. Acad. Sci.
Annotated Checklists of Fishes
, 2004, no. 35, pp. 1–36.
19. Nelson, J.S.,
Fishes of the World
, 4th ed., Hoboken,
New Jersey: John Wiley and Sons, 2006.
20. Posada, D. and Crandall, K.A., Modeltest: testing the
model of DNA substitution,
Bioinformatics
, 1998,
vol. 14, pp. 817–818.
21. Regan, C.T., The classification of the blennioid fishes,
Ann. Mag. Nat. Hist.
,
Ser. 8
, 1912, vol. 10, no. 57,
pp. 265–280.
22. Ronquist, F. and Huelsenbeck, J.P., MRBAYES 3:
Bayesian phylogenetic inference under mixed models,
Bioinformatics
, 2003, vol. 19, pp. 1572–1574.
23. Stevenson, D.E. and Matarese, A.C., The ronquils: a
review of the North Pacific fish family Bathymasteridae
(Actinopterygii: Perciformes: Zoarcoidei),
Proc. Biol.
Soc. Washington
, 2005, vol. 118, no. 2, pp. 367–406.
24. Takashima, Y., Morita, T., and Yamashita, M., Com
plete mitochondrial DNA sequence of Atlantic horse
mackerel
Trachurus trachurus
and molecular identifi
cation of two commercially important species
T. tra
churus
and
T. japonicas
using PCRRFLP,
Fish. Sci.,
2006, no. 72, pp. 1054–1065.
25. Yatsu, A., Phylogeny and zoogeography of the subfam
ilies Xiphisterinae and Cebidichthyinae (Blennioidei,
Stichaeidae), in
IndoPacific Fish Biology, Proc. of the
Second International Conference on IndoPacific Fishes
,
Tokyo: Ichthyological Society of Japan, 1986, pp. 663–
678.
26. Yatsu, A., Yasuda, F., and Taki, Y., A new stichaeid fish,
Dictyosoma rubrimaculata
from Japan, with notes on
the geographic dimorphism in
Dictyosoma burger, Jpn.
J. Ichthyol.
, 1978, vol. 25, no. 1, pp. 40–50.
Translated by E. Shvetsov
... Hence, with dietary diversity, ontogenetic dietary shifts, convergent evolution of herbivory, and sister taxa with different diets, the pricklebacks are a highly appropriate study system for understanding dietary specialization and the mechanisms underlying pancreatic amylase activity variation in particular. We focused on members of two parts of the stichaeid phylogeny: the Cebidichthyidae (Chereshnev et al. 2013;Kim et al. 2014), which features the evolution of herbivory in Cebidichthys violaceus, and the Xiphisterinae (Chereshnev et al. 2013;Kim et al. 2014), which features omnivory in two species (Phytichthys chirus and Xiphister atropurpureus), and the evolution of herbivory in Xiphister mucosus. For comparison, we included two carnivorous stichaeids, Dictyosoma burgeri and Anoplarchus purpurescens, as carnivory is the basal dietary condition of the family ( fig. 1). ...
... Hence, with dietary diversity, ontogenetic dietary shifts, convergent evolution of herbivory, and sister taxa with different diets, the pricklebacks are a highly appropriate study system for understanding dietary specialization and the mechanisms underlying pancreatic amylase activity variation in particular. We focused on members of two parts of the stichaeid phylogeny: the Cebidichthyidae (Chereshnev et al. 2013;Kim et al. 2014), which features the evolution of herbivory in Cebidichthys violaceus, and the Xiphisterinae (Chereshnev et al. 2013;Kim et al. 2014), which features omnivory in two species (Phytichthys chirus and Xiphister atropurpureus), and the evolution of herbivory in Xiphister mucosus. For comparison, we included two carnivorous stichaeids, Dictyosoma burgeri and Anoplarchus purpurescens, as carnivory is the basal dietary condition of the family ( fig. 1). ...
... Numbers in parentheses show number of taxa evaluated at that branch. Boxes highlight alleged families or subfamilies within the polyphyletic family Stichaeidae, with Cebidichthyidae (top), Xiphisterinae (middle), and Alectriinae (bottom) all highlighted (Chereshnev et al. 2013;Kim et al. 2014). Xiphisterinae is recognized as Xiphisteridae by Chereshnev et al. (2013). ...
Article
Amylase activity variation in the guts of several model organisms appears to be explained by amylase gene copy number variation. We tested the hypothesis that amylase gene copy number is always elevated in animals with high amylolytic activity. We therefore sequenced the amylase genes and examined amylase gene copy number in prickleback fishes (family Stichaeidae) with different diets including two species of convergently evolved herbivores with the elevated amylase activity phenotype. We found elevated amylase gene copy number (six haploid copies) with sequence variation among copies in one herbivore (Cebidichthys violaceus) and modest gene copy number (two to three haploid copies) with little sequence variation in the remaining taxa, which included herbivores, omnivores, and a carnivore. Few functional differences in amylase biochemistry were observed, and previous investigations showed similar digestibility among the convergently evolved herbivores with differing amylase genetics. Hence, the phenotype of elevated amylase activity can be achieved by different mechanisms (i.e., elevated expression of fewer genes, increased gene copy number, or expression of more efficient amylase proteins) with similar results. Phylogenetic and comparative genomic analyses of available fish amylase genes show mostly lineage-specific duplication events leading to gene copy number variation, although a whole-genome duplication event or chromosomal translocation may have produced multiple amylase copies in the Ostariophysi, again showing multiple routes to the same result.
... Our studies of the relationships within the suborder Zoarcoidei showed that the phylogenetic schemes that are obtained using molecular genetics methods differ, to a degree (sometimes, substantial), from the schemes based on comparative morphological and cladistic studies of individual taxa of the suborder [9][10][11][12][13][14][15][17][18][19]. This, in full measure, applies to different taxa of the superfamily Stichaeoidea sensu Makushok [6]. ...
... The p dis tance estimate was 8.9% (Table 2), confirming that the greatly diverged X. atropurpureus and D. burger cannot belong to one taxonomic group. In a previous study [19], we also noted substantial genetic differences between these species and suggested not only that they should be placed in different subfamilies, Xiphisteri nae and Cebidichthyinae, but also raising the rank of the latter to family. In the phylogenetic tree ( Fig. 1) reconstructed from the pooled set of mitochondrial and nuclear markers, the genus Xiphister, in contrast to the well separated genus Dictyosoma, is clustered with the taxa of stichaeid subfamilies; therefore, the question of elevating the status of the subfamily Xiphisterinae remains open. ...
Article
Full-text available
Based on the analysis of nucleotide sequences of mitochondrial (COI, cytochrome b, 16S rRNA genes) and nuclear (RNF213 and rhodopsin genes) molecular markers, we defined the levels of divergence, relationships, and structure of the superfamily Stichaeoidea of the suborder Zoarcoidei. The system of the superfamily based on morphological data that was offered by Makushok [6] is not confirmed by the molecular and genetic results. Our investigations suggest that the superfamily Stichaeoidea should include not only the families Stichaeidae, Pholidae, and Ptilichthyidae, but also the Zaproridae and Cryptacanthodidae, while the family Anarhichadidae should be excluded from it.
... The understanding of phylogenetic relationships and taxonomy of eelpouts (Zoarcoidei) has grown in the past few years due to a number of studies carried out by several independent research groups (Radchenko et al. 2009a(Radchenko et al. , 2009bKartavtsev et al. 2009;Radchenko et al. 2010aRadchenko et al. , 2010bRadchenko et al. 2012aRadchenko et al. , 2012bChereshnev et al. 2012Chereshnev et al. , 2013Turanov et al. 2012;Kwun & Kim 2013;Kim et al. 2014;Radchenko et al. 2014aRadchenko et al. , 2014bTuranov et al. 2016). The suborder comprises about 400 marine fish species inhabiting temperate and arctic waters of the northern and southern hemispheres, while their major diversity is concentrated in the North Pacific (Anderson 2003;Nelson 2006;Eschmeyer & Fong 2015). ...
Article
The infraorder Zoarcales (Cottoidei), or eelpouts, includes about 400 species of coldwater fishes concentrated mainly in the North Pacific. To date, the molecular phylogenetic methods in combination with morphological data have significantly contributed to understanding the taxonomic composition of this group and made it possible to confirm/refute validity of some families of obscure origin. In spite of the growing amount of new data on taxonomy and evolution of eelpouts, a consideration of the original and independent data is obviously needed to verify the existing knowledge of this taxon. In this study, which is based on concatenated matrix of Co-1 and Cyt-b mitochondrial genes, as well as relying on the samples from seven families and 45 species of eelpouts, we have reconstructed the phylogeny, which is generally consistent with previous inferences. Despite the resolution of the original data matrix is low, we have demonstrated the monophyletic origin of the families Zoarcidae and Anarhichadidae, as well as Neozoarcidae, previously related to Stichaeidae and recently revised Eulophiidae. The polyphyletic patterns amongst some subfamilies in Stichaeidae have been confirmed, whereas Opisthocentrinae and Pholidae seem to constitute a valid family-level taxon. Our results provide new opportunities with respect to taxonomic relationships in the complex and diverse group of eelpouts , whose part in the tree of life is not covered by recently flourishing multilocus phylogeny of teleost fishes. In light of the data obtained, the necessity of more unified and reproducible approaches to resolve the issues of evolution and taxonomy of such a complex group as Zoarcales becomes more evident.
... Note that the family Bathymasteridae is considered by the pres ence of primitive morphological features to be the old est in the suborder Zoarcoidei [7,35,36]. Further more, based on considerable morphological and genetic differences, it is suggested to separate the genus Dictyosoma (with Cebidichthys) from the sub family Xiphisteginae (sensu Makushok, 1958) into an independent family Cebidichthyidae [37]. ...
Article
Full-text available
Based on an analysis of sequence variation in mitochondrial and nuclear markers, the levels of divergence, relationships, and system of the suborder Zoarcoidei was defined. It was demonstrated that DNA lineages of the families Bathymasteridae and Cebidichthyidae were positioned at the bottom of the suborder phylogenetic tree. The family Zoarcidae is a monophyletic group, the youngest in the evolutionary terms. Zoarcidae, Anarhichadidae, Neozorcidae, and Eulophiidae form a group of related families. The family Stichaeidae is heterogeneous and has a polyphyletic origin; within this family, the subfamilies Chirolophinae, Alectriinae, Xiphisterinae, and Stichaeinae are sister taxa. The subfamilies Opisthocentrinae and Lumpeninae are isolated from Stichaedae; Opisthocentrinae is closely associated with the families Pholidae and Ptilichthyidae, and Lumpeninae is closely associated with Zaproridae and Cryptacanthodidae. It is suggested that the rank of subfamilies Opisthocentrinae and Lumpeninae should be raised.
... Both species have three pairs of highly branched trunk canals and a well-developed cephalic canal system. The lateral-line structure of Xiphister has been illustrated and discussed previously (Makushok, 1961; Yatsu, 1986; Chereshnev et al., 2013; Klein et al., 2013), but these works have focused on adult morphology and have not discussed ontogeny or the distribution or morphology of neuromasts. Such information is critical for understanding the evolution and functional significance of multiple trunk canals in Stichaeidae and other teleostean fishes. ...
Article
Full-text available
The structure and ontogeny of lateral-line canals in the Rock Prickleback, Xiphister mucosus, were studied using cleared-and-stained specimens, and the distribution and morphology of neuromasts within lateral-line canals were examined using histology. X. mucosus has seven cephalic canals in a pattern that, aside from four branches of the infraorbital canals, is similar to that of most teleostean fishes. Unlike most other teleosts, however, X. mucosus features multiple trunk lateral-line canals. These include a short median posterior extension of the supratemporal canal and three paired, branching canals located on the dorsolateral, mediolateral, and ventrolateral surfaces. The ventrolateral canal (VLC) includes a loop across the ventral surface of the abdomen. All trunk canals, as well as the branches of the infraorbitals, are supported by small, dermal, ring-like ossifications that develop independently from scales. Trunk canals develop asynchronously with the mediodorsal and dorsolateral canals (DLC) developing earliest, followed by the VLC, and, finally, by the mediolateral canal (MLC). Only the mediodorsal and DLC connect to the cephalic sensory canals. Fractal analysis shows that the complexity of the trunk lateral-line canals stabilizes when all trunk canals develop and begin to branch. Histological sections show that neuromasts are present in all cephalic canals and in the DLC and MLC of the trunk. However, no neuromasts were identified in the VLC or its abdominal loop. The VLC cannot, therefore, directly function as a part of the mechanosensory system in X. mucosus. The evolution and functional role of multiple lateral-line canals are discussed. J. Morphol., 2015. © 2015 Wiley Periodicals, Inc. © 2015 Wiley Periodicals, Inc.
... Anderson (1984), however, did not list any stichaeid synapomorphies (all characters included in his analysis of relationships of Stichaeidae to other zoarcoid families are plesiomorphic for Stichaeidae), and it has been shown that the loss of ribs does not unite Pholidae and Scytalinidae, as the latter does have ribs ( Hilton, 2009) and the absence of ribs in the former is related to the development of haemonephropophyses, a synapomorphy for the family Pholidae ( Makushok, 1958; Sweetser and Hilton, unpublished data). Further, most recent studies using both molecular (e.g., Kartavtsev et al., 2009;Radchenko et al., 2009Radchenko et al., , 2011Chereshnev et al., 2013;Kwun and Kim, 2013;Kim et al., 2014) and morphological (Clardy and Hilton, unpublished data) data strongly suggests that the family Stichaeidae is not monophyletic, with representatives of all or most other zoarcoid families becoming embedded within stichaeid taxa. For example, in a Bayesian analysis of the mitochondrial genes Cyt-b, Co-1, and 16S rRNA, Radchenko et al. (2011) found a wellsupported sister-group relationship between Cryptacanthodes bergi (the only cryptacanthodid included in the analysis), Zaprora silenus and some lumpenine stichaeids (Acantholumpenus mackayi and Leptoclinus maculatus); much of this resolution was lost when a nuclear gene (RNF213) was analyzed, but this tree is consistent with the mtDNA hypothesis, just with less resolution. ...
Article
The four species included in the family Cryptacanthodidae are eel-like, burrowing fishes distributed in the cold-temperate coastal waters of the North Pacific and the western North Atlantic. This study describes the osteology and aspects of the ontogenetic skeletal development of two species, Cryptacanthodes maculatus from the western North Atlantic and C. aleutensis from the eastern North Pacific. We discuss the relationships of Cryptacanthodidae among other zoarcoid families. The Cryptacanthodidae have been previously included in the Stichaeidae, but removed and classified as a separate family based on the skull, pectoral radial, and cephalic lateral-line morphology. Our observations (similarities in gill arch and pectoral girdle morphology; specifically, a thin sheet-like flange of bone from the posterior margin of the supracleithrum) suggest a close relationship to at least some of the members of the family Stichaeidae. J. Morphol., 2014. © 2014 Wiley Periodicals, Inc.
... This taxon is large in number, including over 340 species (Nelson, 2006), and have been already in a focus of the researchers Turanov et al., 2012;and current paper). In the recent past its structure underwent serious rearrangements at the level of families (Chereshnev et al., 2012(Chereshnev et al., , 2013Kwun & Kim, 2013;Radchenko et al., 2009;Zemnukhov, 2012). The credit for these findings completely goes to molecular genetic methods. ...
Article
Full-text available
The analysis of variation among 203 nucleotide sequences of Co-1 gene (DNA-barcode) for 45 species, 31 genera and 7 families of the order Perciformes from the Far Eastern seas of Russia has been performed. As a result, 42 species (93.3%) can be unambiguously identified using molecular DNA-barcode at Co-1, whereas more variable markers are required for other species (6.7%): Stichaeus grigorjewi, S. nozawae, and Lumpenus sagitta. The latter includes as well 2 morphologically distinct (by number of vertebrae) but genetically unresolved species, L. sagitta (Sea of Okhotsk) and L. fabricii (Bering Sea). In addition, within this genus morphologically poorly characterized but genetically well-distinguished cryptic species has been detected. Amphi-Pacific distribution is in question relative to L. sagitta. Cryptic diversity was observed in the genus Ammodytes.
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In fishes, the evolution of herbivory has occured within a spectrum of digestive strategies, with two extremes on opposite ends: (i) a rate-maximization strategy characterized by high intake, rapid throughput of food through the gut, and little reliance on microbial digestion or (ii) a yield-maximization strategy characterized by measured intake, slower transit of food through the gut, and more of a reliance on microbial digestion in the hindgut. One of these strategies tends to be favored within a given clade of fishes. Here, we tested the hypothesis that rate or yield digestive strategies can arise in convergently evolved herbivores within a given lineage. In the family Stichaeidae, convergent evolution of herbivory occured in Cebidichthys violaceus and Xiphister mucosus, and despite nearly identical diets, these two species have different digestive physiologies. We found that C. violaceus has more digesta in its distal intestine than other gut regions, has comparatively high concentrations (>11mM) of short-chain fatty acids (SCFA, the endpoints of microbial fermentation) in its distal intestine, and a spike in β-glucosidase activity in this gut region, findings that, when coupled to long retention times (>20h) of food in the guts of C. violaceus, suggest a yield-maximizing strategy in this species. X. mucosus showed none of these features and was more similar to its sister taxon, the omnivorous Xiphister atropurpureus, in terms of digestive enzyme activities, gut content partitioning, and concentrations of SCFA in their distal intestines. We also contrasted these herbivores and omnivores with other sympatric stichaeid fishes, Phytichthys chirus (omnivore) and Anoplarchus purpurescens (carnivore), each of which had digestive physiologies consistent with the consumption of animal material. This study shows that rate- and yield-maximizing strategies can evolve in closely related fishes and suggests that resource partitioning can play out on the level of digestive physiology in sympatric, closely related herbivores. Copyright © 2015 Elsevier GmbH. All rights reserved.
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New stichaeid fishes (Pisces: Stichaeidae): Stichaeus brachigrammus sp. nova; Stichaeopsis sakhalinensis sp. nova; Nivchia makushoki , gen. et sp. nova, with body, seismosensory system canals, are described from Miocene deposits of Sakhalin (Agnevskaja Svita). The phylogenetic position of the new genus in the existing subfamily Xiphisterinae is discussed.
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Pricklebacks are elongate, slightly compressed, blennylike fishes inhabiting cold coastal marine waters of the Northern Hemisphere. Numerous sharp spines in the dorsal fin, which runs the entire length of the body, give this family its common name. Pricklebacks are most similar to gunnels (Pholidae); a major feature distinguishing pricklebacks is the greater length of the anal fin relative to the length of the fish, with the anal fin origin typically closer to the tip of the snout than to the tip of the caudal fin or equidistant. Dorsal fin entirely made up of spines or including some soft rays posteriorly; 22-127 spines and 0-82 soft rays. Anal fin with 1-5 spines at origin followed by 20-102 soft rays; one subfamily (Stichaeinae) with up to 3 spines at insertion of anal fin. Pectoral fins smaller than eye to large and fan-shaped or with lower rays longer than upper, rays 3-21. Pelvic fins small, placed in front of the pectorals (jugular), usually present, with 1 spine and 1-4 rays. Head with or without dermal appendages ("tentacles," "cirri," or "filaments" of authors); dermal crest present in some species. One pair of nostrils. Body usually covered with small overlapping scales, head except for cheeks usually devoid of scales. Seismosensory canals of head usually well developed; preopercular pores typically 6, mandibular 4. Trunk lateral line variable, from one or two barely discernible rows of neuromasts to single and multiple canals, some with complex branching. Teeth small, conical or incisiform. Gill membranes in most species broadly united and not attached to the isthmus. Branchiostegal rays 5-7. Opercular siphon present in most species. Pyloric caeca typically present. Ribs present. Swim bladder absent. Vertebrae 43-133. Total length 5-7 cm (2-2.75 in) measured in small samples of Eulophias and Zoarchias, to 76 cm (30 in) in the well-known species Cebidichthys violaceus (monkeyface prickleback). Distributed along coasts in the North Pacific, North Atlantic, and Arctic oceans. Most species occur in the North Pacific. Found under rocks and among algae in the intertidal zone to shallow bays, to depths of 250 m or more on the outer continental shelf and upper slope. Diet is small benthic invertebrates. Thirty-seven genera and 76 species. The Stichaeidae are most closely related to the Pholidae, Zoarcidae, and other northern blennylike fishes (Makushok 1958 (ref. 2878), Gosline 1968 (ref. 26848)) and classified with them in the suborder Zoarcoidei (Nelson 1984 (ref. 13596), 1994 (ref. 26204)). Gill (1864 (ref. 1703)) was first to separate the stichaeids from the gunnels and other blennioid fishes and name them as a separate group. Following the orthography of the time, he called the group the Stichaeoidae. Gill's family included Anisarchus, Chiro- lophis, Eumesogrammus, Leptoclinus, Lumpenus, and Stichaeus. Later authors added many new forms,
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The fish family Bathymasteridae, commonly known as ronquils, is reviewed based on an examination of nearly 500 adult and larval specimens. An identification key based on adults is provided. Information on adult morphology, including a detailed description of the cephalic lateralis system for all members of the family, is included as well as information on the early life history stages of each genus. The family Bathymasteridae is distinguished within the suborder Zoarcoidei by the presence of ctenoid scales; well-developed pelvic bones and pelvic fins; numerous vomerine, palatine, and dentary teeth; and several internal osteological. features. The Bathymasteridae includes seven species classified in the genera Ronquilus, Rathbunella, and Bathymaster, and is broadly distributed in the North Pacific, from Baja California to the Sea of Japan. The monotypic genus Ronquilus is found from southern California to the Gulf of Alaska. Rathbunella contains two species restricted to the coasts of California and Baja California. Bathymaster is the most diverse and broadly distributed genus, containing four species ranging from British Columbia around the Pacific Rim to the northern Sea of Japan.
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