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Tribe Eritrichieae (Boraginaceae s.str.) in West Asia: A molecular phylogenetic perspective

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A selection of Boraginaceae genera was used to obtain a framework for the phylogenetic position of some tribes belong to subfamily Boraginoideae and genera within tribe Eritrichieae (Heterocaryum, Rochelia, Eritrichium, Lappula, Lepechiniella, and Asperugo) and related species. Our results were produced on the basis of nrDNA ITS and cpDNAtrnL-F sequences. The combined nrDNA ITS trnL-F data confirm four main clades of Boraginoideae comprising Echiochileae, Boragineae, Lithospermeae, and Cynoglosseae s. l. (including Eritrichieae, Cynoglosseae s. str., and Myosotideae). The tribe Eritrichieae itself at the current status is paraphyletic; some members, for example Asperugo procumbens, Lepechiniella inconspicua, Myosotidium hortensia, and Cryptantha flavoculata are placed out of the core tribe Eritrichieae. The genus Heterocaryum is monophyletic and allied with a subclade of genera Lappula, Lepechiniella, Eritrichium, and Rochelia. Rochelia is monophyletic, but Eritrichium and Lappula are non-monophyletic. Lepechiniella is nested among a group of Lappula species.
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ORIGINAL ARTICLE
Tribe Eritrichieae (Boraginaceae s.str.) in West Asia:
a molecular phylogenetic perspective
Maryam Khoshsokhan Mozaffar Shahrokh Kazempour Osaloo
Roghayeh Oskoueiyan Kosar Naderi Saffar Atefe Amirahmadi
Received: 13 March 2012 / Accepted: 4 October 2012 / Published online: 13 November 2012
ÓSpringer-Verlag Wien 2012
Abstract A selection of Boraginaceae genera was used to
obtain a framework for the phylogenetic position of some
tribes belong to subfamily Boraginoideae and genera
within tribe Eritrichieae (Heterocaryum,Rochelia,Eri-
trichium,Lappula,Lepechiniella, and Asperugo) and rela-
ted species. Our results were produced on the basis of
nrDNA ITS and cpDNAtrnL-F sequences. The combined
nrDNA ITS trnL-F data confirm four main clades of Bor-
aginoideae comprising Echiochileae, Boragineae, Litho-
spermeae, and Cynoglosseae s. l. (including Eritrichieae,
Cynoglosseae s. str., and Myosotideae). The tribe Eri-
trichieae itself at the current status is paraphyletic; some
members, for example Asperugo procumbens,Lepechini-
ella inconspicua,Myosotidium hortensia, and Cryptantha
flavoculata are placed out of the core tribe Eritrichieae. The
genus Heterocaryum is monophyletic and allied with a
subclade of genera Lappula,Lepechiniella,Eritrichium,
and Rochelia.Rochelia is monophyletic, but Eritrichium
and Lappula are non-monophyletic. Lepechiniella is nested
among a group of Lappula species.
Keywords Boraginoideae Eritrichieae Heterocaryum
Lappula Lepechiniella nrDNA ITS cpDNAtrnL-F
Molecular phylogeny
Introduction
Members of the Boraginaceae s. str. (=subfamily Boragi-
noideae) have a worldwide distribution with ca 130 genera
and 2,300 species (Mabberley 1997). This family is very
easily recognized by their vegetative and floral characters
(Popov 1953; Riedl 1967; Nasir 1989; Khatamsaz 2002).
However, they form a very heterogeneous group with a
wide range of variation, particularly in their floral and fruit
characters. For this reason, the family has been variously
divided into groups whose number and limits are not very
clearly defined. Boraginaceae has variously been divided
into 4–20 tribes (e.g. Popov 1953, 12 tribes) even though
some authors have accepted only four to seven tribes
(Bentham and Hooker 1873; Gurke 1897). The main tribes
of this family are Boragineae DC., Lithospermeae (DC.)
Gurke, Cynoglosseae DC., Eritrichieae Benth. and Hook.
Myosotideae Reichenb., Trigonotideae (M. Pop.) H. Riedl,
and Trichodesmeae Zak. (Riedl 1997). On the basis of atpB
gene sequences, Langstrom and Chase (2002), established
a new tribe Echiochileae (Riedl) Langstrom and Chase
composed of Echiochilon Desf., Antiphytom DC. ex
Meisn., Ogastemma Brummitt., and Sericostoma Stocks ex
Wight. Weigend et al. (2010), on the basis of trnL-F data,
M. Khoshsokhan Mozaffar (&)
Department of Biology, Qom Branch, Islamic Azad University,
Qom, Islamic Republic of Iran
e-mail: m.khoshm@gmail.com
S. Kazempour Osaloo (&)K. Naderi Saffar A. Amirahmadi
Department of Plant Biology, Faculty of Biological Sciences,
Tarbiat Modares University, 14115-154 Tehran, Iran
e-mail: skosaloo@modares.ac.ir
K. Naderi Saffar
e-mail: k_naderi_12@yahoo.com
A. Amirahmadi
e-mail: atefeamirahmadi@yahoo.com
R. Oskoueiyan
Department of Biological Sciences, Ayatollah Amoli Branch,
Islamic Azad University, Amol, Iran
e-mail: ro.osko@gmail.com
A. Amirahmadi
Biology Department, School of Biology,
Damghan University, Damghan, Iran
123
Plant Syst Evol (2013) 299:197–208
DOI 10.1007/s00606-012-0715-4
revealed the polyphyly of the tribe Trigonotideae and
accepted four tribes Boragineae s. l., Lithospermeae s. lat.,
Cynoglosseae s. l., and Echiochileae. In the most classifi-
cations, Eritrichieae has been recognized as a distinct tribe
(Bentham and Hooker 1873; Baillon 1888; Gurke 1897;
Al-Shehbaz 1991; Riedl 1997; Takhtajan 1997).
Several studies based on micromorphology, for example
the columnar and/or pyramidal gynobase and appendaged
nutlets (Johnston 1924; Hilger 1985), palynology, for
example heterocolpate pollen (Ahn and Lee 1986; Diez and
Benito 1991; Khatamsaz 2001), and karyology, for exam-
ple x=12 and small chromosome size (Luque 1992;
Ghaffari 1996; Coppi et al. 2006) have provided evidence
of the close relationship of Eritrichieae with Cynoglosseae.
In recent molecular systematic studies (Langstrom and
Chase 2002; Khoshsokhan et al. 2008a,b; Weigend et al.
2010) Eritrichieae and Cynoglosseae are closely related
and intermixed taxa.
The tribe Eritrichieae is mainly distributed in the
mountains in Eurasia, from the Arctic to the Himalayas, and
in the west of North America (Popov 1953; Ovchinnikova
2009). This tribe is characterized by flowers frequently
brachymorphic, anthers subsessile, style short, hidden in
corolla tube, nutlets four (sometimes in fruit rudiments of
1–3 nutlets) with wings or spines or tubercles and columnar/
pyramidal gynobase. Tribe Eritrichieae in the worldwide
distribution has 19 genera and 449 species (Al-shehbaz
1991, cited in Langstrom and Chase 2002; Ovchinnikova
2009).
The tribe has been studied from various standpoints,
including gross morphology (Riedl 1967; Kazempour
Osaloo 1993; Khatamsaz 2002), nutlet micromorphology
and ontogeny (Hilger 1985; Ovchinnikova 2006a), paly-
nology (Diez and Benito 1991; Kazempour Osaloo 1993;
Khatamsaz 2001; Ovchinnikova 2006b), karyology (Luque
1992), and molecular phylogeny (Langstrom and Chase
2002; Weigend et al. 2010).
Hitherto, all molecular phylogenetic studies of the
whole of Boraginaceae s. str. at the tribal level utilized only
two cpDNA fragments, rbcL-atpB intergenic spacer
Table 1 List of Iranian genera (tribe Eritrichieae) studied in this article
List of genera Number of species
in the world/Iran
Distribution Taxonomic placement
(tribe/subtribe)
Asperugo 1/1 Eurasia, North America North Africa; Boreal,
Tethyan, and Madrean subkingdoms
1. Asperugeae/-
2. Eritricieae/Asperuginae
3. Eritrichieae/-
4. Asperugeae/-
Eritrichium 76/1 Cold parts of Asia, partly in Europe and the
western part of North America
1. Eritrichieae/Cynoglossinae
2. Eritrichieae/Eritrichiinae
3. Eritrichieae/-
4. Eritrichieae/Eritrichiinae
Heterocaryum 6/5 South–West Asia, Tethyan subkingdom 1. Heterocaryeae/-
2. Eritrichieae/Heterocaryinae
3. Eritrichieae/-
4. Heterocaryeae/-
Lappula 70/10 Eurasia, North America, Africa, Australia;
Boreal, Tethyan and Madrean subkingdoms
1. Eritrichieae/Cynoglossinae
2. Eritrichieae/Eritrichiinae
3. Eritrichieae/-
4. Eritrichieae/Echinosperminae
Lepechiniella 16/3 Eurasia, North America, Africa, Australia;
Boreal, Tethyan, and Madrean subkingdoms
1. Eritrichieae/Cynoglossinae
2. Eritrichieae/Eritrichiinae
3. Eritrichieae/-
4. Eritrichieae/Echinosperminae
Rochelia 15–20/7 Europe, South-West and Central Asia, Tethyan
subkingdom
1. Rochelieae/ -
2. Eritrichieae/ Rocheliinae
3. Eritrichieae/ -
4. Rochelieae/ -
Number of species, distribution and some various treatments following different authors 1. Popov (1953), 2. Riedl (1967), 3. Khatamsaz (2002),
4. Ovchinnikova (2009)
198 M. Khoshsokhan Mozaffar et al.
123
(Langstrom and Chase 2002) and trnL intron and trnL-trnF
intergenic spacer (hereafter as trnL-F) (Weigend et al.
2010), to elucidate relationships within it. However,
nrDNA ITS alone or in combination with trnL intron/trnL-
F also was used for phylogenetic analysis of some tribes,
for example Boragineae and Lithospermeae (Weigend
et al. 2010; Hilger et al. 2004).
In this research, we used sequence data from the nrDNA
ITS plus the trnL-F sequences:
1. To elucidate the phylogenetic relationships of some
Boraginoid tribes;
2. To reveal phylogenetic relationships within the tribe
Eritrichieae in west Asia; and
3. To clarify monophyly and relationships within the
multi-specific genera Lappula and Heterocaryum
(Table 1).
Materials and methods
Selection of taxa
Sixty-eight taxa (71 accessions) for nrDNA ITS analysis,
53 taxa (54 accessions) for cpDNAtrnL-F, and 51 taxa for
combined analyses were selected to represent six tribes
currently recognized within Boraginaceae s. str. Two out-
group species, Tournefortia rubicunda Salzm. ex DC. and
Heliotropium bacciferum Frossk. (Heliotropiaceae) were
chosen in accordance with previous works (Langstrom and
Chase 2002; Weigend et al. 2010). Both nrDNA ITS and
trnL-F were newly sequenced for 28 species in this study.
The remaining sequences were obtained from GenBank.
Information concerning voucher specimens or previously
published sequences is presented in the Appendix.
DNA extraction
The leaf materials were prepared either from silica-gel
dried leaves of specimens collected in the wild or herbar-
ium specimens (TARI, FUMH, TMUH). The modified
CTAB method of Doyle and Doyle (1987) was used for
extraction of DNA.
Amplification, sequencing, and alignment of target
regions
The nrDNA ITS region was amplified using as primers both
ITS4 and ITS5 (White et al. 1990) or ITS5m (Sang et al.
1995) or AB101F and AB101R (Douzery et al. 1999). The
cpDNAtrnL-F were amplified using primers ‘‘trnc’’ and
‘trnf’’ of Taberlet et al. (1991). PCR amplification of the
selected markers used 20-ll reactions containing 7.2 ll
deionized water, 10 ll29Taq DNA polymerase master mix
red (Amplicon, cat. no. 180301; 150 mM Tris-HCl pH 8.5,
40 mM (NH
4
)
2
SO
4
, 3.0 mM MgCl
2
, 0.4 mM dNTPs,
0.05 units ll
-1
Amplicon Taq DNA polymerase, inert red
dye and a stabilizer), 0.5 ll of each primer (5 pmol/ll), 1 ll
DMSO, and 0.8 ll template DNA (20 ng/ll). The PCR
profile consisted of an initial 5-min premelt at 94 °C and
33–35 cycles of 1:10 min denaturation at 94 °C, annealing at
a temperature depending on the region in 50 s (53 °C for
nrDNA ITS and 57–59 °C for cpDNAtrnL–F), and 1 min
extension at 72 °C, followed by a final extension of 5 min at
72 °C. PCR products were sequenced by use of big dye
terminator cycle sequencing ready-reaction kits, with the
same primers as used for PCR, in an ABI Prism 3,7309l
DNA analyzer (Applied Biosystems, USA).
Sequences were edited using BioEdit ver. 7.0.9.0 (Hall
1999) and aligned using MUSCLE (Edgar 2004) followed
by manual adjustment. The alignment of the datasets
required the introduction of numerous single and multiple-
base indels (insertions/deletions). Positions of indels were
treated as missing data for all datasets.
Phylogenetic analysis
Maximum parsimony (MP) analysis was conducted using
PAUP* (Swofford 2002). The heuristic search option was
used for each of the two single region datasets, using tree
bisection–reconnection (TBR) branch swapping, with
1,000 replicates of the random addition sequence. Unin-
formative characters were excluded from the analysis.
Branch support values were calculated using a full heuristic
search with 1,000 bootstrap replicates (Felsenstein 1985)
each with a simple addition sequence. Combinability of
these two datasets was assessed by use of the partition
homogeneity test (the incongruence length difference test
(ILD) of Farris et al. (1995)) as implemented in PAUP*
(Swofford 2002). The test was conducted with invariant
characters excluded (Cunningham 1997) using the heuristic
search option involving 100 replicates of the random
addition sequence and TBR branch swapping with 1,000
homogeneity replicates. The maximum number of trees
was set to 1,000.
The model of sequence evolution for each dataset was
selected by use of the software MrModeltest v. 2.3
(Nylander 2004) as implemented in MrMTgui (Nuin 2005)
based on the Akaike information criterion (AIC) (Posada
and Backley 2004). All datasets were analyzed as a single
partition with the GTR ?I?G model by Bayesian
inference (BI) using the software MrBayes version 3.12
(Ronquist and Huelsenbeck 2003). Posteriors on the model
parameters were estimated from the data, using the default
priors. The analysis was performed with 4 million gener-
ations, using Markov chain Monte Carlo search. MrBayes
Tribe eritrichieae 199
123
performed two simultaneous analyses starting from dif-
ferent random trees (Nruns =2) each with four Markov
Chains trees sampled every 100 generations. The first 25 %
of trees were discarded as the burn-in. The remaining trees
were then used to build a 50 % majority rule consensus tree
accompanied by posterior probability (PP) values. Tree
visualization was performed by use of Tree View version
1.6.6 (Page 2001).
Results
Size and structure of molecular data sets
The aligned, nrDNAITS data set was 698 nucleotide sites
long, of which 348 nucleotide sites were parsimony
informative. The length of the nrDNA ITS region varies
from 577 bp in Heliotropium bacciferum to 627 bp in
Lappula semiglabra (Ledeb.) Gurke. Most sequences (63
sequences) for the taxa included in this study were between
606 and 620 bp long. Almost 48 ambiguous sites were
found in nrDNA ITS sequences overall. These sites were
eliminated before the phylogenetic analysis. The aligned
trnL-F data set was 1,102 nucleotide sites long, of which
225 were parsimoniously informative. The length of the
trnL-F sequences varied from 799 bases in Myosotis
lithospermifolia Hornem. to 923 bases in Heliotropium
bacciferum. These data sets differed in their taxon sam-
pling, with 71 accessions for nrDNA ITS and 54 for trnL-F.
The aligned combined nrDNA ITS-trnL-F data set for 51
taxa was 1,800 bp long, of which 532 were parsimoniously
informative.
Analysis of nrDNA ITS dataset
MP analysis of the dataset resulted in 120 shortest trees of
length (L) =1,980 steps, CI =0.373, and RI =0.688
(tree not shown). The Bayesian tree is topologically similar
to the MP tree (Fig. 1). All tribes (Echiochileae, Boragi-
neae, Lithospermeae, and Myosotideae) with the exception
of Cynoglosseae and Eritrichieae are well supported in the
monophyletic groups.
Asperugo procumbens L., Myositidium hortensia (Dec-
ne) Baill., Cryptantha flavoculata Payson, and Lepechini-
ella incospicua (Brand.) Riedl are positioned far from the
core Eritrichieae. This assemblage is, in turn, composed of
two subclades. One subclade comprises solely Heterocar-
yum A. DC. species; the second contains Lappula Gilib.,
Eritrichium Schrad., Rochelia Reichenb., and Lepechini-
ella M.pop. Rochelia is monophyletic but Lappula and
Eritrichium are non-monophyletic. Three Lepechiniella
species sampled here nested among a group of Lappula
species (L. barbata (M. B.) Gurke and L. microcarpa
(Ledeb.) Gurke), and another species, Lepechiniella
inconspicua, is nested in a clade of Paracaryum (DC.)
Boiss., Cynoglossum L. and Lindelofia Lehm.
Analysis of chloroplast trnL-F dataset
The parsimony search of the trnL-F dataset retained 100
trees with length (L) =386 steps, CI =0.775, and
RI =0.880 (tree not shown). Again, the Bayesian tree is
topologically similar to the MP tree (Fig. 2). With the
exception of the tribes Boragineae, Cynoglosseae, and
Eritrichieae, the three remaining ones (Echiochileae,
Lithospermeae, and Myosotideae) are well supported
monophyletic groups. Asperugo procumbens and Lepechi-
niella inconspicua arise in different branches far from the
core Eritrichieae. Heterocryum and Rochelia are mono-
phyletic whereas Lappula is not monophyletic. The two
Lepechiniella species analyzed are nested among a group of
Lappula species.
Analysis of the combined ITS-trnL-F dataset
The ILD test suggested that the trnL-F and nrDNA ITS
datasets were not incongruent (p\0.1). MP analysis of the
aligned combined ITS-trnL-F sequences (1,800 nucleotide
positions) for 27 taxa of Eritrichieae and related tribes
resulted in 10 most parsimonious trees, each of 1,890 steps
(CI =0.499, RI =0.708, tree not shown). Once again,
similar to the nrDNAITS tree, progressing upward from the
base, tribe Echiochileae is sister to all remaining tribes. In
the next clade, Boragineae and Lithospermeae are sister
taxa. Tribe Myosotideae, is monophyletic and sister group to
some members of Cynoglosseae/Eritrichieae, but Cyno-
glosseae and Eritrichieae are not monophyletic (Fig. 3). The
resulting tree from the combined dataset is better resolved
and supported than both nrDNA ITS and trnL-F trees.
Discussion
The phylogenetic status of Boraginoid tribes
This study, in agreement with previous work (Langstrom
and Chase 2002; Weigend et al. 2010), indicates that the
tribes Eritrichieae and Cynoglosseae, at the current status,
are not monophyletic. Four members of the former tribe are
allied with the two subclades of Cynoglosseae out of the
core Eritrichieae in a large clade. Myosotis (Myosotideae)
plus Trigonotis Stev. (Trigonotideae) are also nested within
this clade. Hence, all of these tribes are united in a single
tribe, called Cynoglosseae s. l. (sensu Weigend et al. 2010).
A subclade comprising Myosotis species and Trogonotis in
nrDNAITS tree, have the closest relationship of these two
200 M. Khoshsokhan Mozaffar et al.
123
genera (Weigend et al. 2010). Both are characterized by
nutlets without glochids or wings (Zhu et al. 1995).
The general topology resulting from our datasets is
similar to that of studies by Langstrom and Chase (2002)
and Weigend et al. (2010), confirming the four main clades
of Boraginaceae s. str., corresponding to Echiochileae,
Boragineae, Lithospermeae, and Cynoglosseae s. l.
Echiochileae, with the two species analyzed herein, are
Fig. 1 Phylogeny of nrDNA ITS data from 68 taxa using Bayesian
inference. Posterior probability (PP) and bootstrap (BP) value are next
to the nodes (PP/BP), some indicated by arrows. Delimitation of four
confirmed clades is indicated in the filled boxes (Lith Lithospermeae,
Bor Boragineae, EC Echiochileae). Nodes E,C,M,L,B, and EC
correspond to tribes Eritrichieae, Cynoglosseae, Myosotideae, Litho-
spermeae, Boragineae, and Echiocileae, respectively. Species names
in bold face represent members of Eritrichieae. Accession numbers
for some species retrieved from GenBank are given in front of their
name
Tribe eritrichieae 201
123
202 M. Khoshsokhan Mozaffar et al.
123
retrieved at the base of the nrDNA ITS and combined trees
as revealed by Weigend et al. (2010). The members of this
tribe are shrubs and weedy plants whereas the remaining
tribes are herbaceous plants. Boragineae and Lithosper-
meae seem to be closest sister tribes (Figs. 1,3). They
commonly have the same base chromosome number
(x=8) (Luque and Valdes 1984). Morphologically, Bor-
agineae is characterized by usually well-developed faucal
appendages, a simple style with one or two stigmas, nutlets
with a basal attachment scar often with an annular rim
around it, and a flat gynobase. Lithospermeae has the style
usually divided at the apex with two to four stigmas,
combined with nutlets with a broad basal attachment scar
and a flat gynobase.
Fig. 2 Phylogenetic tree from Bayesian analysis of the cpDNAtrnL-
F sequences. Posterior probability (PP) and bootstrap (BP) values are
next to the nodes (PP/BP), some indicated by arrows. Species names
in Bold face represent members of Eritrichieae. Nodes E,C,M,L,B,
and EC correspond to tribes Eritrichieae, Cynoglosseae, Myosotideae,
Lithospermeae, Boragineae, and Echiocileae, respectively. Accession
numbers for some species retrieved from GenBank are given in front
of their name
Fig. 3 Bayesian inference tree resolved using nrDNA ITS-
cpDNAtrnL-F sequences data for 51 species. Posterior probability
(PP) and bootstrap (BP) values are next to the nodes (PP/BP), some
indicated by arrows. Delimitation of four confirmed clades indicated
in the filled boxes.(Lith Lithospermeae, Bor Boragineae, EC
Echiochileae)
b
Tribe eritrichieae 203
123
The relationships within Eritrichieae
Asperugo procumbens, Lepechiniella inconspicua, Cryp-
tantha flavoculata, and Myosotidium hortensia (the last two
species were analyzed for nrDNA ITS, only) are placed out
of the core Eritrichieae within Cynoglosseae s. l. clade. A.
procumbens positioned almost at the base of Cynoglosseae
s. l. This taxon with calyx divided into linear-lanceolate
lobes, accrescent and saucer-like in the fruiting stage, and
unusual nutlet arrangement differed from other taxa of
Eritrichieae (Riedl 1967; Hilger 1985). Popov (1953), and
after that Ovchinnikova (2009), classified Asperugo L. in
the monotypic tribe Asperugeae Zak. This is not, however,
consistent with our finding. Lepechiniella inconspicua,an
annual species, is nested in a clade with Paracaryum,
Cynoglossum, and Lindelofia. It was originally described as
Paracaryum inconspicuum Brand (cited in Riedl 1967).
Heterocaryum is positioned as a sister to the remainder
core Eritrichieae. Our analysis showed that the five mem-
bers of the genus formed a distinct clade. This genus with
six species ephemerals grows in deserts and semi-deserts,
especially in mountainous semi-deserts of Iran, southern
Russia, and Turkey to Central Asia and the Himalayas
(Popov 1953; Riedl 1967; Khatamsaz 2002; Ovchinnikova
2009) (Table 1). Morphologically its species are charac-
terized by four zygomorphous and unequal nutlets. The
nutlets are small, flat, dorsiventrally compressed, with
dentate wing. All species but H. laevigatum (Kar. and Kir.)
DC. are covered by thin bristles. Based on the last char-
acter, Riedl 1967 divided the genus into two sections
Heterocaryum and Laevigata (M. Pop.) H. Riedl. H. lae-
vigatum belongs to the monotypic section Laevigata and
forms a sister group relationship with the monophyletic
section Heterocaryum (including H. subsessile Vatke., H.
szovitsianum (Fitch. and Mey.) DC., H. macrocarpum Zak.,
and H. rigidum DC.) (Figs. 1,2,3).
Genus Eritrichium is a perennial plant distributed
mainly in the cold parts of Asia, some partially in Europe,
and some in the western part of North America. It is rep-
resented here by two species which seem to be non-
monophyletic and accompanied by Rochelia and Lappula
species (Table 1).
Rochelia is a small Eurasian genus with 15–20 species
(Mabberly 1997; Ovchinnikova 2009) (fruits with two
nutlets), of which seven species are represented herein. It is
monophyletic and well allied with the two Lappula species,
L. sessiflora (Boiss.) Gurke and L. drobovii M. Pop. ex Pavl.
Khoshsokhan et al. (2010), on the basis of nrDNA ITS and
the trnL-F sequences, revealed the monophyly of Rochelia.
Their analysis indicated that Rochelia sect. Rochelia,
because of inclusion of the monotypic R. sect. Cryptocarpa
(R. cardiosepala Bge.), is not monophyletic. Likewise, its
subsections, Rochelia and Pedunculares, are paraphyletic.
The genus Lappula is a difficult genus of 70 species
(Ovchinnikova 2009) with two sections: Lappula and
Sclerocaryum (DC.) Post and Kuntze (Riedl 1967). Section
Lappula comprises four subsections, Lappula,Macranthae
(M. Pop.) H. Riedl., Sinaicae (M. Pop.) H. Riedl. and
Anomalolappula M. Pop. They are distributed mainly in
temperate Europe and Asia, Australia, and America (Nasir
1989). These taxa are usually annual with small and thin
plants whose limits are not well defined, possibly because
of hybridization. The nutlet characteristics are of impor-
tance in the delimitation of the various species. Nutlets are
tuberculate–verrucate, bearing marginal glochidiate acule-
ate appendages. Nutlets are winged or wingless. The genus
at the current status is not a monophyletic group. Lappula
sect. Lappula is not monophyletic, whereas, L. sect. Scle-
rocaryum is monophyletic (see below). In our analysis,
nine Lappula species sampled formed three distinct bran-
ches. Lappula sinaica (M. Pop.) H. Riedl (of the sect.
Lappula subsect. Sinaicae) is the first diverging branch of
the Lappula/Eritrichium/Rochelia clade. The species is
characterized by small nutlets ca 2 mm long, with an
indistinct margin, bearing few appendages, minutely verr-
ucate–tuberculate.
The other branch is, in turn, composed of two subclades
of seven Lappula and two/three Lepechiniella species. One
subclade comprises Lappula spinocarpos (Forssk.) Asch-
erson and Kuntze and L. ceratophora (M. Pop.) M. Pop.
(both of the sect. Sclerocaryum). These species have large
nutlets with uniform, thick, and stonelike tubercles, with
high grumose walls and disk nearly or completely covered
by its adjacent thickened margins, sometimes protruding
like a keel. Because of these morphological characteristics,
Sadat (1989) transferred the two species to a separate
genus, Sclerocaryopsis Brand.
The second subclade contains Lappula patula (Lehm.)
Ascherson ex Gurke (of sect. Lappula subsect. Macranthae)
and Lappula squarrosa (Retz.) Durmort (of sect. Lappula
subsect. Lappula), as sister taxa, allied with L. semiglabra,
L. microcarpa (both of sect. Lappula subsect. Macranthae),
and L. barbata (of sect. Lappula subsect. Lappula) and
Lepechiniella. It is noteworthy that three of four Lepechi-
niella species (Le. albiflora Riedl, Le. persica (Boiss.) Riedl
and Le. wendelboi Riedl) sampled here well nested among
these Lappula species. Lepechiniella is morphologically
similar to Lappula, both have homomorphic, equal-sized,
and detachable nutlets (Popov 1953; Riedl 1967; Kazempour
Osaloo 1993; Khatamsaz 2002). In Flora of USSR, Popov
(1953) established Lepechiniella with eight species of which
five species were transferred from other genera, for example
Paracaryum,Echinospermum, and Eritrichium. The genus
at the current status, has 16 species (Ovchinnikova 2009)
distributed in Iran, Afghanistan, and C. Asia. According to
nomenclatural priority, we suppose that the type species of
204 M. Khoshsokhan Mozaffar et al.
123
the genus might be Le. omphaloides (Schrenk) M. Pop (see
Popov 1953), which is not included in our analysis. The
genus is characterized by perennial, rarely annual, habit and
winged nutlets. Nevertheless, in terms of perennial habit, the
genus is similar to Eritrichium and Paracaryum, but, having
a pyramidal gynobase, is much related to Lappula. With the
exception of Le. albiflora, the two Lepechiniella (Le. persica
and Le. wendelboi) do not have nucleotide substitutions with
Lappula microcara and L. barbarta. These species should be
synonymized with Lappula species L. barbata. Other spe-
cies (Le. inconspicua) as noted above, are placed with the
Paracaryum, Cynoglossum, and Lindelofia clade.
Lappula barbata and L. microcarpa have been mor-
phologically distinguished by discrepancy in fruit length,
number and size of anchorlike spinules along margin of
disk, and different apparent color of plants. Ripe fruit
samples are needed for identification. Also, investigation of
the phenol chemistry of populations in the two species in
Turkey revealed the same phenolic bands (Apaydin and
Bilgener 2000).
The third branch comprises L. sessiliflora (subsect.
Anomalolappula M. Pop.), and L. drobovii. They are sister
to the Rochelia clade. This subclade is placed out of the
Lappula species core and settled in the Rochelia species
clade. In all analyses, these two species are placed sister to
Rochelia with strong bootstrap and Bayesian posterior
probability support. These two species have some diag-
nostic characters: in L. sessiliflora pedicels are very short
and nutlets sessile, as if adhering to the thick axis of
raceme, and in L. drobovii fruits usually have 1 or 2 broad-
winged nutlets. Popov (1953) reported that L. sessiliflora is
rather more related to Rochelia, because the flowers, at
least, are similar to those of Rochelia; he also noted that in
L.sessiliflora (similar to the Rochelia), rarely, two nutlets
develop in the fruit and the disk of nutlets was completely
covered by adjacent margins. Khatamsaz (2002) introduced
L. drobovii from northeastern Iran. This species is also
distributed in C. Asia and the type species has been
reported from Tashkent, Uzbekistan (Popov 1953). These
two species have low nucleotide differences in both nrDNA
and trnL-F sequences.
Conclusion
On the basis of nrDNA ITS, cpDNAtrnL-F, and combi-
nation of the two sequences, four tribes in previous studies
(Echiochileae, Boragineae, Lithospermeae, and Cynoglos-
seae s. l.) are confirmed. Eritrichieae is placed within
Cynoglosseae and none of them is monophyletic. Bulk
Eritrichieae formed a monophyletic group. Two genera,
Heterocaryum and Rochelia were supported well in a
distinct subclade; Lappula is not monophyletic. It seems
that Eritrichium in the current status is not monophyletic.
Three species of Lepechiniella settled within Lappula
species, and one species (Lepechiniella inconspicua)isa
part of the Paracaryum and its allies. To summarize, two
single sequences (nrDNA ITS and trnL-F regions) are
congruent, however, nrDNA ITS segment resolved the
relationships and better supported the branches than the
trnL-F.
Acknowledgments We thank the herbariums TARI and FUMH for
providing leaf materials.
Appendix
Genbank accession numbers for nrDNA ITS and
cpDNAtrnL-F sequence data, and voucher information with
herbarium where specimen is deposited. The accession
numbers for nrDNA ITS (reference or Location)/ and trnL-
F (reference or location) are given in front of the species
names. The dash symbol (–) shows that the sequence is not
accessible. Species with a star symbol (*) have been
sequenced in this article. TMUH: Tarbiat Modares University
Herbarium, TARI: Herbarium of Research Institute of Forests
and Rangelands, FUMH: Ferdowsi University of Mashhad
Herbarium.
Anchusa officinalis L., AF531080 (Papini et al. 2002)/
AY045703 (Bigazzi et al. 2002); Anchusa thessala Boiss. and
Spruner, AF531084 (Papini et al. 2002)/AF530599 (selvi
et al. 2002); Arnebia guttata Bge., EF199862 (Hu et al.
2006)/EF199872 (Hu et al. 2006); Arnebia euchroma (Royle)
Johnst., EF199848 (Hu et al. 2006)/EF199874 (Hu et al.
2006); Arnebia szechenyi Kanitz, EF199863 (Hu et al. 2006)/
EF199871 (Hu et al. 2006); Asperugo procumbens L.,
AB758290 *(Iran: Kazempour, 2007-3TMUH)/AB758320
*(Iran: Kazempour, 2007-3TMUH); Borago officinalis L.,
AF091151 (Ferguson 1998)/–; Brunnera orientalis (Schenk)
Johnst., AY383289 (Hilger et al. 2004)/AF530601 (Selvi
et al. 2002); Buglossoides purpurocaerulea (L.) Johnst.,
AJ555897 (Langstrom and Chase 2002)/–; Cerinthe minor
L., AB758291 *(Iran: Kazempour, 2008-6 TMUH)/L43203
(Bohle et al. 1996); Cryptantha flavoculata Payson.,
AF091154 (Ferguson 1998)/–; Cynoglossum creticum Miller,
FR715303 (Selvi et al. 2011)/–; Cynoglossum officinale L.,
AB758292 *(Iran: Assadi, 73526TARI)/ AB758321 *(Iran:
Assadi, 73526TARI); Cynoglottis barrelieri (All.) Vural and
Kit, AF531081 (Papini et al. 2002)/AY045708 (Bigazzi et al.
2002); Echiochilon fruticosum Desf., EU044843 (Thomas
et al. 2007)/EU044881 (Thomas et al. 2007); Echiochilon
persicum (Burm.f.) Johnst., AB758293 *(Iran: Mozaffarian,
49917TARI)/AB758322 *(Iran: Mozaffarian, 49917TARI);
Echium vulgare L., AJ555896 (Langstrom and Chase 2002)/–;
Tribe eritrichieae 205
123
Eritrichium canum (Benth.) Kitam., AB758294 *(Ger-
many: cultivated in Munich Botanical Garden)/AB758323
*(Germany: cultivated in Munich Botanical Garden); Eri-
trichim nanum (Vill.) Schrad., AY092901 (Winkworth
et al. 2002)/–; Gastrocotyle macedonica (All.) Vural and
Kit, AF531086 (Papini et al. 2002)/AY045706 (Bigazzi
et al. 2002); Heliotropium bacciferum Frossk., AB758295
*(Iran: Sonboli, 01TMUH)/AB758324 *(Iran: Sonboli,
01TMUH); Heterocaryum laevigatum (Kar. et Kir.) DC.,
AB758296 *(Iran: Faghihna and Zangooei, 25349FUMH)/
AB758325 *(Iran: Faghihna and Zangooei, 25349FUMH);
Heterocaryum subsessile Vatke., AB758297 *(Iran: Fag-
hihna and Zangooei, 28193TMUH)/AB758326 *(Iran:
Faghihna and Zangooei, 28193TMUH); Heterocaryum
szovitsianum (Fisch. et Mey.) DC., AB758298 *(Iran:
Kazempour Osaloo, 2007-5TMUH)/AB758327 *(Iran:
Kazempour Osaloo, 2007-5TMUH); Heterocaryum rigi-
dum DC., AB758299 *(Iran: Shafaghi and Borhan,
371TARI)/AB758328 *(Iran: Shafaghi and Borhan,
371TARI); Heterocaryum macrocarpum Zak., AB758300
*(Iran: Joharchi and Zangooei, 19639TMUH)/AB758329
*(Iran: Joharchi and Zangooei, 19639TMUH); Lappula
barbata (M. B.) Gurke, AB564703 (Khoshsokhan et al.
2010)/AB564713 (Khoshsokhan et al. 2010); Lappula
ceratophora (M. Pop.) M. Pop., AB758301 *(Iran: Moz-
affarian, 58407TARI)/AB758330 *(Iran: Mozaffarian,
58407TARI); Lappula drobovi M. Pop. ex Pavl.,
AB758302 *(Iran: Faghihnia and Zangooei, 26636FUMH)/
AB758331 *(Iran: Faghihnia and Zangooei, 26636FUMH);
Lappula microcarpa (Ledeb.) Gurke, AB758303 *(Iran:
Kazempour Osaloo, 2007-6TMUH)/AB758332 *(Iran:
Kazempour Osaloo, 2007-6TMUH); Lappula microcarpa
(Ledeb.) Gurke, AB758304 *(Iran: Assadi, 75090TARI)/–;
Lappula patula (Lehm.) Ascherson ex Gurke, AB758305
*(Iran: Assadi, 73860TARI)/AB758333 *(Iran: Assadi,
73860TARI); Lappula semiglabra (Ledeb.) Gurke,
AB758306 *(Iran: Mozaffarian, 42998TARI)/AB758334
*(Iran: Mozaffarian, 42998TARI); Lappula squarrosa
(Retz.) Durmort., AB758307 *(Germany: cultivated in
Munich Botanical Garden)/AB758335 *(Germany: culti-
vated in Munich Botanical Garden); Lappula sessiliflora
(Boiss.) Gurke, AB564704 (Khoshsokhan et al. 2010)/
AB564714 (Khoshsokhan et al. 2010); Lappula sinaica (DC.)
Ascherson ex Schweinf., AB758308 *(Iran: Kazempour
Osaloo, 2007-7TMUH)/AB758336 *(Iran: Kazempour Osa-
loo, 2007-7TMUH); Lappula spinocarpos (Forssk.) Ascher-
son et Kuntze, AB758309 *(Iran: Kazempour Osaloo,
2007-4TMUH)/AB758337 *(Iran: Kazempour Osaloo,
2007-4TMUH); Lepechiniella albiflora Riedl., AB758310
*(Afghanistan: Rechinger, 31424TARI)/-; Lepechiniella
inconspicua (Brand) Riedl, AB758311 *(Iran: Joharchi and
Ayatollahi, 10711FUMH)/AB758338 *(Iran: Joharchi and
Ayatollahi, 10711FUMH); Lepechiniella persica (Boiss.)
Riedl, AB758312 *(Iran: Assadi and Maassumi,
51278TARI)/AB758339 *(Iran: Assadi and Maassumi,
51278TARI); Lepechiniella wendelboi Riedl, AB758313
*(Iran: Assadi and Maassumi, 21064TARI)/AB758340
*(Iran: Assadi and Maassumi, 21064TARI); Lepechiniella
wendelboi Riedl, AB758314 *(Iran: Kazempour Osaloo,
2008-7TMUH)/–; Lindelofia longiflora Baill., AJ555895
(Langstrom and Chase 2002)/–; Myosotidium hortensia
(Decne) Baill, AY092902 (Winkworth et al. 2002)/–;
Myosotis abyssinica Boiss. and Reuter, AY092904
(Winkworth et al. 2002)/–; Myosotis arvensis (L.) Hill.,
AY092908 (Winkworth et al. 2002)/–; Myosotis asiatica
Schischk, AB758315 *(Iran: Serkart and Olfat, 167TARI)/
AB758341 *(Iran: Serkart and Olfat, 167TARI); Myosotis
australis R. Br., AY092910 (Winkworth et al. 2002)/–;
Myosotis lithospermifolia (Willd.) Hornem., AY092923
(Winkworth et al. 2002)/AB758342 *(Iran: Babakhanloo
and Amin, 18179TARI); Myosotis olympica Boiss., –/
AB758343 *(Iran: Assadi and Shahsavari, 65961TARI);
Myosotis sylvstica Her. ex Hoffm., AY092935 (Winkworth
et al. 2002)/–; Omphalodes japonica Maxim., DQ320747
(Serrano et al. 2005)/–; Omphalodes kuzinskyanae Willk.,
AY837595 (Serrano et al. 2004)/–; Omphalodes linifolia
L., AB758316 *(Germany: cultivated in Munich Botanical
Garden)/AB758344 *(Germany: cultivated in Munich
Botanical Garden); Omphalodes linifolia L., AY837597
(Serrano et al. 2004)/–; Omphalodes nitida Hoffmanns and
Link, AY837615 (Serrano et al. 2004)/–; Onosma hookeri
Nyman., EF199847(Hu et al. 2006)/–; Onosma panicula-
tum Bueau and French., EF199859 (Hu et al. 2006)/
EF199851 (Hu et al. 2006); Onosma waltoni Duthic,
EF199846 (Hu et al. 2006)/–; Paracaryum persicum
(Boiss.) Boiss., AB758317 *(Iran: Kazempour Osaloo,
2007-8TMUH)/AB758345 *(Iran: Kazempour Osaloo,
2007-8TMUH); Rochelia bungei Trautv., AB564695
(Khoshsokhan et al. 2010)/AB564705 (Khoshsokhan et al.
2010); Rochelia cardiosepala Bge., AB564601 (Khoshsok-
han et al. 2010)/AB564711 (Khoshsokhan et al. 2010); Roc-
helia disperma (L. F.) Koch., AB564698 (Khoshsokhan et al.
2010)/AB564708 (Khoshsokhan et al. 2010); Rochelia mac-
rocalyx Bge., AB564600 (Khoshsokhan et al. 2010)/
AB564710 (Khoshsokhan et al. 2010); Rochelia mirheydari
Reidl et Esfandiari, AB564696 (Khoshsokhan et al. 2010)/
AB564706 (Khoshsokhan et al. 2010); Rochelia persica Bge.
ex. Boiss., AB564697 (Khoshsokhan et al. 2010)/AB564707
(Khoshsokhan et al. 2010); Rochelia peduncularis
Boiss., AB564699 (Khoshsokhan et al. 2010)/AB564709
(Khoshsokhan et al. 2010); Solenanthus circinatus Ledeb.,
AB758318 *(Iran: Khoshsokhan, 2007-9TMUH)/AB758346
*(Iran: Khoshsokhan, 2007-9TMUH); Symphytum 9uplan-
dicum, AY092903 (Winkworth et al. 2002)/–; Trichodesma
206 M. Khoshsokhan Mozaffar et al.
123
aucheri DC., AB758319 *(Iran: Mozaffarian, 57195TARI)/
AB758347 *(Iran: Mozaffarian, 57195TARI); Tournefortia
rubicunda Salzm.ex DC., EF688852 (Luebert et al. 2008)/
EF688799 (Luebert et al. 2008); Trigonotis peduncularis
(Trevir.) Benth., DQ320740 (Serrano et al. 2005)/–.
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... However, studies that dealt with the family from a molecular point of view, which focus on the evolutionary aspect, are still few. This may be due to the high cost of materials needed by these studies, depending on the molecular data, [5] divided the family into three clads: Echiochileae, Eritrichieae and Trichodesmeae,This study is considered one of the first studies in Iraq. ...
... 14286% Fig (4) Table (7).This primer UBC862 gave 8 main bands distributed between 6 different bands and 2 identical bands, and their molecular sizes ranged between (200-1100) base pairs, and the number of duplicated bands was 74 bands, the highest number of duplicated bands was 6 in species A. decumbens, and the lowest number was 2 in the two species,H. bacciferum and G. flavum and, this primer gave a discriminating ability that reached 11.53846 and an efficiency of 10.9589, while the morphological heterogeneity of this primer was 75% Fig (5) 189 197 and the number of duplicated bands reached 115, the highest number of multiplexed bands was 9 in the species H. bacciferum, while the lowest number 4 in the species P. ovate, and this primer gave a discriminating ability of 9.615385 and an efficiency of 13.69863, while the formal variation of this primer was 50% Fig (6) ...
Research
Full-text available
Isolation of the genomic DNA from leaves of the species under study belonging to different families with concentrations ranging between (70-163ng/ml) and purity of (1.75-2) which was estimated by a Nanodropdevice at the wavelengths of 260-280 nm, Random Amplified Polymorphic DNA (RAPD) and The Inter-simple sequence repeat (ISSR).The discrepancies between the replicated pieces of each species (their numbers and molecular sizes) were detected after the replication products of the samples were migrated onto the agarose gel and stained. With the stain of Red safe staining solution,(20) selected primers showing varied outcomes of multiplication among the species examined, as those primers showed with (RAPD) Marker (189) polymorphic bands out of (197) total main bands, While with (ISSR) Marker (52) polymorphic bands out of (56) total main bands. For RAPD-PCR analysisit gave the primers OP-E20, OP-L05, OP-L20 and OP-M05 and OP-V19 unique fingerprints for each genotype, but this did not apply to other primers.While, ISSR-PCR analysisthe primers UBC842 and A35, UBC480, and A34 are uniquely fingerprinted for each genotype, but this did not apply to other primers. These methods were good in diagnosing the species understudy
... However, studies that dealt with the family from a molecular point of view, which focus on the evolutionary aspect, are still few. This may be due to the high cost of materials needed by these studies, depending on the molecular data, [5] divided the family into three clads: Echiochileae, Eritrichieae and Trichodesmeae,This study is considered one of the first studies in Iraq. ...
... 14286% Fig (4) Table (7).This primer UBC862 gave 8 main bands distributed between 6 different bands and 2 identical bands, and their molecular sizes ranged between (200-1100) base pairs, and the number of duplicated bands was 74 bands, the highest number of duplicated bands was 6 in species A. decumbens, and the lowest number was 2 in the two species,H. bacciferum and G. flavum and, this primer gave a discriminating ability that reached 11.53846 and an efficiency of 10.9589, while the morphological heterogeneity of this primer was 75% Fig (5) 189 197 and the number of duplicated bands reached 115, the highest number of multiplexed bands was 9 in the species H. bacciferum, while the lowest number 4 in the species P. ovate, and this primer gave a discriminating ability of 9.615385 and an efficiency of 13.69863, while the formal variation of this primer was 50% Fig (6) ...
Experiment Findings
Full-text available
Isolation of the genomic DNA from leaves of the species under study belonging to different families with concentrations ranging between (70-163ng/ml) and purity of (1.75-2) which was estimated by a Nanodropdevice at the wavelengths of 260-280 nm, Random Amplified Polymorphic DNA (RAPD) and The Inter-simple sequence repeat (ISSR).The discrepancies between the replicated pieces of each species (their numbers and molecular sizes) were detected after the replication products of the samples were migrated onto the agarose gel and stained. With the stain of Red safe staining solution,(20) selected primers showing varied outcomes of multiplication among the species examined, as those primers showed with (RAPD) Marker (189) polymorphic bands out of (197) total main bands, While with (ISSR) Marker (52) polymorphic bands out of (56) total main bands. For RAPD-PCR analysisit gave the primers OP-E20, OP-L05, OP-L20 and OP-M05 and OP-V19 unique fingerprints for each genotype, but this did not apply to other primers.While, ISSR-PCR analysisthe primers UBC842 and A35, UBC480, and A34 are uniquely fingerprinted for each genotype, but this did not apply to other primers. These methods were good in diagnosing the species understudy
... However, studies that dealt with the family from a molecular point of view, which focus on the evolutionary aspect, are still few. This may be due to the high cost of materials needed by these studies, depending on the molecular data, [5] divided the family into three clads: Echiochileae, Eritrichieae and Trichodesmeae,This study is considered one of the first studies in Iraq. ...
... 14286% Fig (4) Table (7).This primer UBC862 gave 8 main bands distributed between 6 different bands and 2 identical bands, and their molecular sizes ranged between (200-1100) base pairs, and the number of duplicated bands was 74 bands, the highest number of duplicated bands was 6 in species A. decumbens, and the lowest number was 2 in the two species,H. bacciferum and G. flavum and, this primer gave a discriminating ability that reached 11.53846 and an efficiency of 10.9589, while the morphological heterogeneity of this primer was 75% Fig (5) 189 197 and the number of duplicated bands reached 115, the highest number of multiplexed bands was 9 in the species H. bacciferum, while the lowest number 4 in the species P. ovate, and this primer gave a discriminating ability of 9.615385 and an efficiency of 13.69863, while the formal variation of this primer was 50% Fig (6) ...
Article
Full-text available
Isolation of the genomic DNA from leaves of the species under study belonging to different families with concentrations ranging between (70-163ng/ml) and purity of (1.75-2) which was estimated by a Nanodropdevice at the wavelengths of 260-280 nm, Random Amplified Polymorphic DNA (RAPD) and The Inter-simple sequence repeat (ISSR).The discrepancies between the replicated pieces of each species (their numbers and molecular sizes) were detected after the replication products of the samples were migrated onto the agarose gel and stained. With the stain of Red safe staining solution,(20) selected primers showing varied outcomes of multiplication among the species examined, as those primers showed with (RAPD) Marker (189) polymorphic bands out of (197) total main bands, While with (ISSR) Marker (52) polymorphic bands out of (56) total main bands. For RAPD-PCR analysisit gave the primers OP-E20, OP-L05, OP-L20 and OP-M05 and OP-V19 unique fingerprints for each genotype, but this did not apply to other primers.While, ISSR-PCR analysisthe primers UBC842 and A35, UBC480, and A34 are uniquely fingerprinted for each genotype, but this did not apply to other primers. These methods were good in diagnosing the species understudy
... Brand (approximately 67 species) have their centre of endemism and diversity in southwest Asia, mainly in the western I-T bioregion (Riedl 1967;Weigend et al. 2016). Only a few studies (e.g., Emadzade et al. 2011;Khoshsokhan-Mozaffar et al. 2013, 2018Manafzadeh et al. 2014;Sherafati et al. 2014;Weigend et al. 2016;Moharrek et al. 2017;Saadati et al. 2017;Attar et al. 2018;Kaveh et al. 2018;Nasrollahi et al. 2018;Pourghorban et al. 2020) have employed evolutionary tools to better understand diversification patterns within the Iranian flora. ...
... Considering that the interpretation of morphological and molecular characters (Cohen 2014;Holstein et al. 2016) produced contradictory taxonomic treatments for Cynoglosseae, and considering the conflict between traditional taxonomies (Popov 1974;Riedl 1997;Khatamsaz 2002) and available molecular phylogenies of Boraginaceae (Nazaire and Hufford 2012;Khoshsokhan-Mozaffar et al. 2013;Weigend et al. 2014;Chacón et al. 2016;Pourghorban et al. 2020), we performed a detailed study based on sequences from two chloroplast DNA markers (rpl32-trnL and trnH-psbA) and nuclear ribosomal DNA (internal transcribed spacer; ITS), as well as morphological data encompassing the geographical diversity of the genera of the Cynoglossinae in the western I-T bioregion. This study allowed us to (i) estimate divergence time and evolution within Cynoglossinae, (ii) identify possible traits in life history and nutlet morphology associated with the adaptation to the different habitats of the Iranian plateau, and (iii) reconstruct the ancestral biogeographical area of this subtribe in the western I-T bioregion, especially in the Iranian plateau. ...
Article
The Irano-Turanian (I-T) bioregion harbours one of the Old world’s greatest repositories of botanical diversity; however, the diversification patterns and the phenotypic evolution of its flora are sorely understudied. The subtribe Cynoglossinae is characteristic of the western I-T bioregion, species–rich both in the desertic lowlands and the more mesic highlands of the Iranian plateau. About 70 species of Cynoglossinae are present in the Iranian plateau, 47 of which are endemic to the plateau.Herein, nuclear ITS and cpDNA rpl32-trnL and trnH–psbA sequences were used to investigate the molecular phylogeny, historical biogeography and ancestral character states of Cynoglossinae. Molecular dating and ancestral range reconstruction analyses indicated that the subtribe Cynoglossinae has initiated its diversification from the eastern part of the western I-T during the mid-Miocene, concomitantly with the uplift of the Pamir and Hindu Kush mountains. Moreover, from the Pliocene onwards the Afghan-India collision and extensive deformation of the Arabia-Eurasia convergence probably promoted allopatric speciation in Cynoglossinae via mostly vicariance events. Evolution of annuals with small nutlets from perennials with large nutlets was accompanied by mesic to desert habitats shifts. Herein, to explain distribution of Cynoglossinae in the western I-T, the congruence between cladogenetic, geological and palaeoclimatic events was investigated.
... Given that the sequencing of cpDNA is cheap and easy to obtain, cpDNA has been widely used in population genetic and phylogenetic analyses. The relationship of the majority of boronines has been revised using cpDNA, including trnL-trnF [62], rpl32-trnL, trnH-psbA [63], atpB [64], and trnL [65]. Some of the phylogenetic trees received low bootstrap values. ...
Article
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The Boraginales (Boraginaceae a.l.) comprise more than 2450 species worldwide. However, little knowledge exists of the characteristics of the complete plastid genome. In this study, three new sequences representing the first pt genome of Heliotropiaceae and Cordiaceae were assembled and compared with other Boraginales species. The pt genome sizes of Cordia dichotoma, Heliotropium arborescens, and Tournefortia montana were 151,990 bp, 156,243 bp, and 155,891 bp, respectively. Multiple optimal codons were identified, which may provide meaningful information for enhancing the gene expression of Boraginales species. Furthermore, codon usage bias analyses revealed that natural selection and other factors may dominate codon usage patterns in the Boraginales species. The boundaries of the IR/LSC and IR/SSC regions were significantly different, and we also found a signal of obvious IR region expansion in the pt genome of Nonea vesicaria and Arnebia euchroma. Genes with high nucleic acid diversity (pi) values were also calculated, which may be used as potential DNA barcodes to investigate the phylogenetic relationships in Boraginales. psaI, rpl33, rpl36, and rps19 were found to be under positive selection, and these genes play an important role in our understanding of the adaptive evolution of the Boraginales species. Phylogenetic analyses implied that Boraginales can be divided into two groups. The existence of two subfamilies (Lithospermeae and Boragineae) in Boraginaceae is also strongly supported. Our study provides valuable information on pt genome evolution and phylogenetic relationships in the Boraginales species.
... Although Lappula species have been studied in terms of nutlet morphology (Wu et al. 2014;Ovczinnikova 2006Ovczinnikova , 2021, palynology (Ahn and Lee 1986;Díez and Valdés 1991;Khatamsaz 2001), cytology (Löve 1975(Löve , 1983Luque 1992;Kobrlová and Hroneš 2019), and phylogeny (Huang et al. 2013;Khoshsokhan-Mozaffar et al. 2013, there are still limits due to insufficient sampling. On the one hand, taxonomic and phylogenetic studies require very broad sampling. ...
Article
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Lappula sinaica was recently transferred to the monotypic genus Pseudolappula based on phylogenetic studies, while the related species, L. occultata , has remained in the genus Lappula . In this study, morphological, molecular, and palynological evidence supports that L. occultata should be transferred to the genus Pseudolappula . Both L. occultata and P. sinaica share a combination of nutlets features that distinguish them from Lappula : a longer adaxial keel and a linear attachment scar. Phylogenetic analysis based on ITS and trnL-F strongly supports L. occultata as the sister taxon of P. sinaica . In addition, pollen grains of these two species are 3-syncolporate with 3 alternating pseudocolpi, which is significantly different from the grains of Lappula taxa. Based on the above evidence, the new combination Pseudolappula occultata is proposed.
... Current data are also in accordance with molecular phylogenies provided by (Khoshsokhan- Mozaffar et al. 2018) that transferred closely related species L. sessiliflora to Rochelia genus. This conclusion has previously been suggested by various studies (Khoush et al. 2010;Huang et al. 2013;Mozaffar et al. 2013;Rolfsmeier 2013;Weigend et al. 2013). Moreover, the flowers and nutlet features (two of them undeveloped) designated more affinity of the species to Rochelia genus than Lappula (Popov 1974). ...
Article
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Background The macro/micro-morphology of nutlets in 11 species (and 22 accessions) of the Boraginaceae family was investigated using stereomicroscope and scanning electron microscopy to evaluate the taxonomic relevance of the traits. To evaluate the phylogenetic significance of the character evolution, phylogenetic analysis was carried out by comparing available DNA sequence data from GenBank with selected original nutlet data. Results The Rochelieae nutlets' shape varied from ovoid (ovoid, ovoid-triangular, and ovoid-rectangular) to pyramid. Six major patterns were recognized based on the nutlet ultrastructure characters. Rocheliae is characterized by a transition from “without appendage” to “with tubercles and prickles” on the nutlet disk, and also via a shift from “lack of prickles” to “glossy prickles”. Conclusions The results show that the nutlet ultrastructure pattern of Rochelieae is systematically informative at the genus level, but not at the species level. Findings demonstrated that glochid is not an ancestral trait but is a synapomorphy and the transition to this trait occurred in the genus Lappula . The close boundary of nutlet microstructures between L. barbata and L. microcarpa has been discussed.
... that transferred closely related species L. sessili ora to Rochelia genus. This conclusion has previously been suggested by various studies(Khoush et al. 2010;Huang et al. 2013;Mozaffar et al. 2013;Rolfsmeier 2013;Weigend et al. 2013). Moreover, the owers and nutlet features (two of them undeveloped) indicated more a nity of the species to Rochelia genus than Lappula(Popov 1974). ...
Preprint
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Background: The macro/micro-morphology of nutlets in 11 species (and 22 accessions) of the Boraginaceae family was investigated by stereomicroscope and scanning electron microscopy to evaluate the taxonomic relevance of these traits. To evaluate the phylogenetic significance of the character evolution, available DNA sequence data from GenBank were combined with selected original nutlet data, and phylogenetic analysis was performed. Results: The Rochelieae nutlets' shape varied from ovoid (ovoid, ovoid-triangular, and ovoid-rectangular) to the pyramid. Six major patterns were recognized based on nutlet ultrastructure characters. Rocheliae is characterized by a transition from “without appendage” to “with tubercles and prickles” on the nutlet disk, and also by a shift from “lack of prickles” to “glossy prickles”. Conclusions: The results indicated that the nutlet ultrastructure pattern of Rochelieae is systematically informative at the genus level, but not at the species level. The results showed that glochid is not an ancestral trait but is a synapomorphy and the transition to this trait occurred in the genus Lappula. The Close boundary of nutlet microstructures between L. barbata and L. microcarpa was discussed.
... In topologies obtained from the ITS and combined nuclear-plastid markers ( Figs. 1 and 3, respectively), all samples of Microparacaryum are placed in a strongly supported clade. It is worth noting that in the present expanded phylogenetic tree two accessions, i.e., AB758311/AB758338, which were originally published by Khoshsokhan et al. (2013) under the name Lepechiniella inconspicua (Brand) Riedl, are nested within Microparacaryum. However, that same study already retrieved those sequences with Paracaryum outside the subtribe Eritrichiinae. ...
Article
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Cynoglossinae with ca. 200 spp. is one of the taxonomically most challenging subtribes of tribe Cynoglosseae with regards to generic delimitations. Here, we present a phylogenetic analysis based on nuclear ITS and cpDNA trnL-F and rps16 sequences of 270 accessions including 102 newly sequenced ones, representing all currently recognized genera of Cynoglossinae to clarify relationships among Cynoglossum and allied genera. We conducted Maximum Likelihood, Maximum Parsimony and Bayesian Inference analyses on separate and combined datasets. Cynoglossinae is recovered as a monophylum of closely related genera. Subtribe Cynoglossinae falls into three major groups: (1) clade I including Microparacaryum spp., (2) clade II comprising two species of Lindelofia, several Cynoglossum and Paracynoglossum spp., and (3) a larger clade (clades III+IV) consisting of Solenanthus, Rindera, Trachelanthus, Paracaryum, Pardoglossum, Mattiastrum and the remainder of Cynoglossum. None of the genera were monophyletic in the combined nuclear-plastid and nuclear datasets, except for Microparacaryum. A close relationship between Solenanthus apenninus and Cynoglossum officinale is shown, which suggest transferring S. apenninus to Cynoglossum. Moreover, Pardoglossum atlanticum, the type of the genus, is placed within Mediterranean Cynoglossum corroborating its synonymy under Cynoglossum. Lindelofia olgae is distantly related to the type of the genus (L. longiflora), but more closely connected with Solenanthus core-group. The majority of species currently recognized as members of Rindera do not form a clade with the type of the genus (R. tetraspis). The genus Paracaryum as currently circumscribed is paraphyletic and includes some species of Mattiastrum and Rindera.
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Background: It’s a long history for the use of herbal medicines to derive remedies in Chinese, and the popularity of herbal medicines has risen worldwide. It is necessary to assure the safety, efficacy and quality of herbal medicines by the corrected identification. Inner Mongolia Arnebia Radix is an important and historied used herbal medicine in Inner Mongolia. Methods: The methods of morphological characteristics and DNA barcoding was used to identify the plant origin of Inner Mongolia Arnebia Radix. Results: The identification results of morphological characteristics and DNA barcoding showed that the original plant of Inner Mongolia Arnebia Radix was Arnebia szechenyi, which was distinguished with Arnebia guttata, the official original plant of Inner Mongolia Arnebia Radix. Conclusions: We inferred that that the original plant of Inner Mongolia Arnebia Radix was Arnebia szechenyi.
Article
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We here present molecular phylogeny of the genus Rochelia (Boraginaceae-Eritrichieae). A total of 8 species of Rochelia and 2 species of Lappula as outgroups were included in analyses using nrDNA ITS and cpDNA trnL-F separately and in combination. To examine evolutionary trend of morphological characters, we mapped six diagnostic characters on the combined tree using MacClade 4. The analyses revealed that sect. Rochelia due to inclusion of the monotypic section Cryptocarpa (Rochelia cardiosepala) is not monophyletic. Likewise, its subsections, Rochelia and Pedunculares are paraphyletic. Rochelia persica and R. disperma along with R. cancellata of the monospecific subgenus Neo-Rochelia, as unresolved branches, were sisters to the remaining species. One of six diagnostic characters examined (non-hamate tip of calyx hairs) had evolved as reversal in both R. persica and R. bungei and the other one (nutlets completely clasping the adaxial part of gynobase) had undergone parallel evolution between R. cancellata plus R. peduncularis and R. cardiosepala. Based on the present molecular analyses, the current infrageneric classification of Rochelia, at least at the sectional and subsectional level based upon traditional morphological characters is artificial.
Article
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The aim of this research was to study the phenolic chemistry of Lappula squarrosa (Retz.) Dumort., L. barbata (Bieb.) Gurke and L. microcarpa (Ledeb.) Gurke. The specimens were sorted into three groups according to their general morphological features. Nine morphological characters were determined in each group and measured. According to FisherÕs test, four of these characters which belong to fruit morphology had a difference of 95 %. Each group was diagnosed and were found to belong to L. squarrosa, L. barbata and L. microcarpa. The specimens were hydrolyzed in hydrochloric acid and were extracted with isoamyl alcohol, ethanol and ethylacetate. The extracts were analyzed by paper chromatography. It was found that phenolics from fruits can be important characters in the distinction of these species and good evidence was obtained to determine the relationships between these species. Lappula squarrosa (Retz.) Dumort., L. barbata (Bieb.) Gurke ve L. microcarpa (Ledeb.) Gurke TŸrlerinin Fenolik KimyasÝna Yšnelik Bir ‚alÝßma …zet: Bu • alÝßmanÝn amacÝ Lappula squarrosa (Retz.) Dumort. L. barbata (Bieb.) Gurke ve L. microcarpa (Ledek.) Gurke tŸrlerinin fenolik kimyasÝ Ÿzerinde • alÝßmaktÝ. …rnekler, genel gšrŸnŸßlerine ve stereomikroskop altÝndaki morfolojik incelemelere gšre Ÿ • gruba ayrÝlmÝßtÝr. Her grupta dokuz morfolojik karakter belirlenmiß ve bu karakterler šl • ŸlmŸßtŸr. Fisher testine gšre bu karakterlerden meyve morfolojisine ait dšrt karakter % 95 farklÝlÝk gšstermißtir. Belirlenen gruplarÝn temsil ettiÛi tŸrler teßhis edilip bu tŸrlerin L. squarrosa, L. barbata ve L. microcarpa olduklarÝ saptanmÝßtÝr. …rnekler, hidroklorik asit ile hidroliz edilmiß; izoamil alkol, etanol ve etil asetat kullanÝlarak ekstre edilmißtir. Elde edilen ekstratlar kaÛÝt kromatografisi yšntemiyle analiz edilmißtir. Bu cinsin tŸrleri i • in šzellikle meyvede bulunan fenoliklerin tŸr ayrÝmÝnda šnemli bir karakter olabileceÛi ve tŸrler arasÝndaki akrabalÝÛa da iyi bir kanÝt teßkil edebileceÛi gšsterilmißtir.
Article
The recently-developed statistical method known as the "bootstrap" can be used to place confidence intervals on phylogenies. It involves resampling points from one's own data, with replacement, to create a series of bootstrap samples of the same size as the original data. Each of these is analyzed, and the variation among the resulting estimates taken to indicate the size of the error involved in making estimates from the original data. In the case of phylogenies, it is argued that the proper method of resampling is to keep all of the original species while sampling characters with replacement, under the assumption that the characters have been independently drawn by the systematist and have evolved independently. Majority-rule consensus trees can be used to construct a phylogeny showing all of the inferred monophyletic groups that occurred in a majority of the bootstrap samples. If a group shows up 95% of the time or more, the evidence for it is taken to be statistically significant. Existing computer programs can be used to analyze different bootstrap samples by using weights on the characters, the weight of a character being how many times it was drawn in bootstrap sampling. When all characters are perfectly compatible, as envisioned by Hennig, bootstrap sampling becomes unnecessary; the bootstrap method would show significant evidence for a group if it is defined by three or more characters.