ArticlePDF Available

Antifungal Activity of Lichen-forming Fungi against Colletotrichum acutatum on Hot Pepper

Authors:
  • Institute of Microbiology Chinese Academy of Sciences

Abstract

Antifungal activity of Korean and Chinese lichen-forming fungi (LFF) was evaluated against plant pathogenic fungus of Colletotrichum acutatum, causal agent of anthracnose on hot pepper. This is the first attempt to evaluate antifungal activity of LFF, instead of lichen thalli, against C. acutatum. Total 100 LFF were isolated from the lichens with discharged spore method or tissue culture method. Among the 100 isolates, 8 LFF showed more than 50% of inhibition rates of mycelial growth of the target pathogen. Especially, Lecanora argentata was highly effective in inhibition of mycelial growth of C. accutatum at the rate of 68%. Antifungal activity of other LFF was in the order of Cetrelia japonica (61.4%), Ramalina conduplicans (59.5%), Umbilicaria esculenta (59.5%), Ramalina litoralis (56.7%), Cetrelia braunsiana (56.5%), Nephromopsis pallescensn (56.1%), and Parmelia simplicior (53.8%). Among the tested LFF, 61 isolates of LFF exhibited moderate antifungal activity against the target pathogen at the inhibition rates from 30 to 50%. Antifungal activity of the LFF against C. acutatum was variable at the species level rather than genus level of LFF. This study suggests that LFF can be served as a promising bioresource to develop novel biofungicides.
Plant Pathol. J. 24(2) : 202-206 (2008) The Plant Pathology Journal
© The Korean Society of Plant Pathology
Antifungal Activity of Lichen-forming Fungi against Colletotrichum acutatum on
Hot Pepper
Xinli Wei1,2,†, Hae-Sook Jeon1,†, Keon Seon Han1, Young Jin Koh1 and Jae-Seoun Hur1*
1Korean Lichen Research Institute, Sunchon National University, Sunchon 540-742, Korea
2Key Laboratory of Systematic Mycology & Lichenology, Institute of Microbiology, Chinese Academy of Sciences, Beijing
100080, China
(Received on December 1, 2007; Accepted on March 26, 2008)
Antifungal activity of Korean and Chinese lichen-form-
ing fungi (LFF) was evaluated against plant pathogenic
fungus of Colletotrichum acutatum, causal agent of
anthracnose on hot pepper. This is the first attempt to
evaluate antifungal activity of LFF, instead of lichen
thalli, against C. acutatum. Total 100 LFF were isolated
from the lichens with discharged spore method or tissue
culture method. Among the 100 isolates, 8 LFF showed
more than 50% of inhibition rates of mycelial growth of
the target pathogen. Especially, Lecanora argentata was
highly effective in inhibition of mycelial growth of C.
accutatum at the rate of 68%. Antifungal activity of
other LFF was in the order of Cetrelia japonica (61.4%),
Ramalina conduplicans (59.5%), Umbilicaria esculenta
(59.5%), Ramalina litoralis (56.7%), Cetrelia braunsiana
(56.5%), Nephromopsis pallescensn (56.1%), and Parmelia
simplicior (53.8%). Among the tested LFF, 61 isolates of
LFF exhibited moderate antifungal activity against the
target pathogen at the inhibition rates from 30 to 50%.
Antifungal activity of the LFF against C. acutatum was
variable at the species level rather than genus level of
LFF. This study suggests that LFF can be served as a
promising bioresource to develop novel biofungicides.
Keywords :biofungicide, fungal growth inhibition, lichen-
forming fungi, novel bioresource, plant pathogenic fungus
Pepper anthraconose caused by Collectotrichum acutatum,
is one of the most important diseases in pepper cultivation
in Korea (Choi et al., 2008; Kang et al., 2005). The disease
was reported to be responsible for 10% annual yield loss of
total pepper production in Korea, equivalent to approxi-
mately $0.1 billion per year (Shin et al., 1999). Current
practice for controlling pepper anthracnose is mainly based
on use of synthetic pesticides. However, many synthetic
pesticides may lose their usefulness due to negative
consequences for human health and the environment and
development of resistance in pathogen populations (Russell,
1995). Recently, biological control has been developed as
an alternative to synthetic pesticide treatment. A variety of
microbial antagonists and their metabolites have been
reported to control several different pathogens on various
fruit and vegetables (Fravel, 2005).
Lichens are symbiotic organisms composed of a fungus
(mycobiont) and an algae (photobiont). They produce
characteristic secondary metabolites, lichen substances,
which seldom occur in other organisms. Antifungal activity
of lichen extracts and lichen acids against plant pathogenic
fungi was reported (Gulluce et al., 2006; Halama and Van
Haluwin, 2004; Oh et al., 2006). Nevertheless, the potential
fungal obligate symbionts in lichen have long been
neglected by mycologists and overlooked by agrochemical
industry because of its slow growth in nature and diffi-
culties in their artificial cultivation. The large-scale
industrial production of the lichen metabolites has never
been accomplished. However, use of lichen-forming fungi
can overcome the disadvantage of natural lichen extracts
for industrialization of their metabolites because of their
much faster growth and larger production of the metabolites
in culture than the natural thalli. This is the first attempt to
screen antifungal activity against C. acutatum with use of
large number of lichen-forming fungi, instead of natural
lichen thallus, for further development of industrial produc-
tion of natural fungicides.
The natural thalli of Korean lichens were collected from
20 mountain areas in South Korea during 2002 to 2004
(Hur et al., 2004). Chinese lichens were also collected from
highland areas of Yunnan Province, China (Hur et al.,
2005). Lichen specimens were air-dried for 1 week at room
temperature and stored 20oC until isolation of lichen-
forming fungi (LFF: mycobints). All the lichen materials
were deposited at the herbarium of the Korean Lichen
Research Institute, Sunchon National Univeristy, Korea.
Collectotrichum acutatum KACC40042 was obtained from
Korean Agricultural Culture Collection (KACC), Rural
Development Administration (RDA), Suwon, Korea.
The colonies of LFF were obtained using discharged
*Corresponding author.
Phone) +82-61-750-3383, FAX) +82-61-750-3308
E-mail) jshur1@sunchon.ac.kr
These authors contributed equally to this work.
Note
Antifungal Activity of Lichen-forming Fungi Against Colletorichum acutatum 203
spore method (S in Table 1) and/or tissue culture method (T
in Table 1) (Yoshimura et al., 2002). Details of LFF iso-
lation using discharged spore method were previously
described (Oh et al., 2006).
The fungal components of sterile lichens, or those in
which isolation from discharged spore had not proved
successful, were isolated from thallus fragments by the
method of Yamamoto (Yoshimura et al., 2002). Small
pieces of thallus such as 1 cm in length of fruticose lichen
or 1 cm2 of foliose and crustose lichen were cut from apical
regions, washed in a turbulent flow of tap water for 1 h,
then in excess sterile water, and finally macerated in a
further 3-5 ml sterile water using a mortar and pestle. The
resultant suspension was sieved through 500 μm and 150
μm nylon mesh filters in sequence with sterile water.
Macerate retained on the 150 μm sieve was examined
under a dissecting microscope and the fragments free from
algae were picked out and transferred to agar media using
sterilized stainless steel syringe-needle and inoculated onto
the medium of 24 multi well (d=2 cm) plates. Total 94
inoculums from each lichen material were prepared.
Cultures were incubated at 18oC in the dark and examined
periodically during a week period. Thallus fragments that
remained free of contamination were transferred to fresh
medium. After 2-3 month’s growth, mycobionts produced a
compact mycelium 2-5 mm in diameter. These were
subcultured onto fresh medium for fungal mass production.
Species that continued to grow in subculture were recorded
as successfully isolated. The culture medium of mal-extract
agar was routinely used for isolation and growth of LFF
(Yoshimura et al., 2002).
Analysis of the ribosomal DNA sequence of ITS region
was attempted for molecular confirmation of the isolates
obtained by tissue culture method. The sequences of
resultant fungal mass of isolates and the original lichen
thallus used for isolation were analyzed and compared.
Fresh lichen thalli and fungal mass were fractioned with
cryo-tissue-crasher (SK200, Tokken, Japan). Total DNA
was extracted directly from whole thalli according to Ekman
(1999) with DNeasy Plant Mini Kit (QIAGEN, Germany).
101 dilution of the total DNA was used for PCR
amplification of the nuclear rDNA ITS and 5.8S genes.
Primers for amplification were: ITS4 (5'-TCCTCCGCTT-
ATTGATATGC-3'; White et al., 1990) and ITS5 (5'-GG-
AAGTAAAAGTCGRAACAAGG-3'; White et al., 1990).
Conditions for PCR amplification and cycle sequencing
have been described previously (Arup, 2002). PCR prod-
ucts were purified by PCRquick-spinTM PCR Product
Purification Kit (iNtRON Biotechnology, INC.) and then
sequenced using ABI 3700 automated DNA Sequencer in
NICEM at Seoul National University.
Freshly grown two mycelial masses (3 mm diam.) of the
isolated LFF were placed at the edge of malt extract agar
plate (6 cm diam.) at same distance from the plate center.
Due to slow growth of LFF, the isolates were incubated on
the agar medium at 18oC in dark condition 60 days before
inoculation of C. acutatum. Freshly grown mycelium agar
block (3 mm diam.) of C. acutatum was placed on the
center of the pre-incubated agar plate. The inhibition zone
of mycelial growth of the pathogenic fungus was rated 3 to
5 days after incubation at 18oC and compared with the
control plate. Five replicate plates were used for the
bioassay. Antifungal activity of the lichen-forming fungi
was compared using one-way analysis of variance (ANOVA).
Total 100 lichen-forming fungal isolates were obtained
from Korean and Chinese lichens using discharged spore
method and tissue culture method (Table 1). Many ascos-
pores were successfully discharged from a single apotheci-
um and generally germinated within 1 week. Several fungal
isolates was grown to visible size within 2 months. Lichen-
forming fungi were also induced from lichen thalli by tissue
culture method. Confirmation of lichen-forming fungi was
carried out by ITS sequences analysis. Isolation rates of
lichen-forming fungi from ascospore or lichen thalli were
approximately 30% in this study (data not shown).
Some isolates leached large amount of pigments into the
agar medium during the incubation. This suggested that
secondary metabolites of LFF were produced and diffused
into the medium. Compared with normal fungi, LFF grew
slowly and developed less than 1 cm diameter of mycelium
mass within 5 months. However, the growth rate can be
considered to be much faster than that of the natural lichen
thalli (Yamamoto et al., 1993).
Several LFF showed very strong antifungal activity against
the pepper anthracnose pathogenic fungus (Table 1). Among
the 100 isolates, 8 LFF showed more than 50% of inhibi-
tion rates of mycelial growth of the target pathogen. Especi-
ally, LFF of Lecanora argentata was mostly effective in
inhibition of mycelial growth of C. accutatum at the rate of
68%. Antifungal activity of other LFF was in the order of
Cetrelia japonica (61.4%) > Ramalina conduplicans (59.5
%) = Umbilicaria esculenta (59.5%) > Ramalina litoralis
(56.7%) Cetrelia braunsiana (56.5%) Nephromopsis
pallescensn (56.1%) > Parmelia simplicior (53.8%). Their
antifungal activity was significantly higher than other lichen-
forming fungi tested in this study (P < 0.05). Among the
tested LFF, 61 isolates of LFF exhibited moderate anti-
fungal activity against the target pathogen at the inhibition
rates from 30 to 50%. Among the rest of 31 LFF isolates,
only one LFF of Cladonia cervicornis showed less than
20% inhibition rate (17.8%) and others demonstrated
recognizable antifungal activity from 20 to 30%. Anti-
fungal activity of the LFF against C. acutatum was variable
at the species level rather than genus level of LFF. How-
204 Xinli Wei et al.
Table 1. Antifungal activity of various lichen-forming fungi isolated from Korean and Chinese lichens against hot pepper anthracnose
pathogen, Colletortichum acutatum in vitro
Lichen species Collection
number Locality Isolation
methoda
Mycelium growth inhibition
Diam. (mm)b% of control
Amandinea punctata (Hoffm.) Coppins & Scheid. 50623 Korea T 36.54 ± 1.58 60.9
Anaptychia palmatula (Michx.) Vain. 41078 Korea S 34.37 ± 0.11 57.3
Anaptychia palmatula (Michx.) Vain. 40180 Korea T 34.36 ± 0.86 57.3
Anzia opuntiella Müll. Arg. 40280 Korea S 43.97 ± 1.63 73.3
Bacidia schweinitzii (Tuck.) A. Schneid. 40162 Korea S 38.94 ± 1.75 64.9
Bryoria confusa (D.D. Awasthi) Brodo & D. Hawksw. CH050187 China S 44.18 ± 0.76 73.6
Bryoria himalayensis (Motyka) Brodo & D. Hawksw. CH050365 China S 45.43 ± 3.54 57.7
Caloplaca flavorubescens (Huds.) J.R. Laundon 50696 Korea T 40.76 ± 1.58 67.9
Cetrelia braunsiana (Müll. Arg.) W.L. Culb. & C.F. Culb. 40188 Korea T 26.67 ± 0.58 44.5
Cetrelia japonica (Zahlbr.) W.L. Culb. & C.F. Culb. 30397 Korea T 23.18 ± 1.61 38.6
Cetrelia braunsiana (Müll. Arg.) W.L. Culb. & C.F. Culb. 40425 Korea T 40.48 ± 1.05 67.5
Cladonia furcata (Huds.) Schrad. 40034 Korea T 45.96 ± 0.90 76.6
Cladonia gracilis subsp. turbinata (Ach.) Ahti 41582 Korea S 42.43 ± 3.50 70.7
Cladonia gracilis (L.) Willd. 41474 Korea S 35.46 ± 0.59 59.1
Cladonia metacorallifera Asahina. 41466 Korea S 40.79 ± 2.45 68
Cladonia coniocraea (Flörke) Spreng. 040634-1 Korea T 42.88 ± 1.37 71.5
Cladonia yunnana (Vain.) Abbayes. CH050136 China S 36.48 ± 1.10 60.8
Cladonia macilenta Hoffm. CH050214 China S 45.35 ± 2.47 75.6
Cladonia coccifera (L.) Willd. CH050255 China S 43.20 ± 1.71 72
Cladonia cervicornis (Ach.) Flot. CH050299 China T 49.31 ± 1.14 82.2
Cladonia pleurota (Flörke) Schaer. CH050056 China T 47.49 ± 3.83 79.2
Cladonia squamosissima (Müll. Arg.) Ahti CH050180 China T 43.84 ± 1.02 73.1
Cladonia rangiferina (L.) Weber ex F.H. Wigg. CH050184 China T 40.26 ± 1.00 67.1
Cladonia scabriuscula (Delise) Leight. 40481 Korea S 46.41 ± 1.68 77.4
Everniastrum cirrhatum (Fr.) Hale ex Sipman. CH050065 China S 45.96 ± 1.44 76.6
Gymnoderma coccocarpum Nyl. CH050374 China T 39.98 ± 1.66 66.6
Heterodermia japonica (M. Satô) Swinscow & Krog. CH050263 China T 43.89 ±2.93 73.2
Heterodermia hypoleuca (Mühl.) Trevis. 40067 Korea T 43.07 ± 3.55 71.8
Heterodermia hypoleuca (Mühl.) Trevis. 40598 Korea T 40.99 ± 0.81 68.3
Heterodermia microphylla (Kurok.) Skorepa 40196 Korea T 41.46 ± 1.87 69.1
Hypogymnia delavayi (Hue) Rass. 41338 Korea S 37.7 ± 0.36 62.8
Hypogymnia pseudoenteromorpha M.J. Lai. CH050143 China S 41.65 ± 1.51 69.4
Hypogymnia pruinosa J.C. Wei & Y.M. Jiang. CH050101 China S 38.24 ± 1.22 63.7
Hypogymnia hengduanensis J.C. Wei. CH050100 China T 44.35 ± 1.06 73.9
Hypotrachyna osseoalba (Vain.) Y.S. Park & Hale CH050261 China T 44.76 ± 1.90 74.6
Icmadophila ericetorum (L.) Zahlbr. CH050403 China S 37.26 ± 3.31 62.1
Lecanora argentata (Ach.) Malme 50657 Korea S 19.02 ± 0.12 31.7
Megalospora tuberculosa (Fée) Sipman. 50724 Korea S 41.03 ± 3.00 68.4
Melanelia olivacea (L.) Essl. 40371 Korea S 38.59 ± 1.11 64.3
Menegazzia terebrata (Hoffm.) A. Massal. 41300 Korea T 44.24 ± 0.80 73.7
Menegazzia pseudocyphellata Aptroot, M.J. Lai & Sparrius. CH050262 China S 43.99 ± 0.17 73.3
Myelochroa aurulenta (Tuck.) Elix & Hale. 40664 Korea T 39.13 ± 0.59 65.2
Myelochroa irrugans (Nyl.) Elix & Hale. 40974 Korea T 32.85 ± 2.05 54.8
Myelochroa irrugans (Nyl.) Elix & Hale. 40303 Korea T 33.82 ± 0.79 56.4
Myelochroa irrugans (Nyl.) Elix & Hale. 30730 Korea T 33.53 ± 1.84 55.9
Myelochroa galbina (Ach.) Elix & Hale. 40954 Korea S 41.93 ± 0.29 69.9
Myelochroa aurulenta (Tuck.) Elix & Hale. 40678 Korea S 40.03 ± 2.15 66.7
Myelochroa indica (Hale) Elix & Hale. 40002 Korea T 39.74 ± 1.97 66.2
Myelochroa entotheiochroa (Hue) Elix & Hale. 41602 Korea S 33.27 ± 2.03 55.5
Nephromopsis yunnanensis (Nyl.) Randlane & Saag. CH050123 China S 35.16 ± 1.61 58.6
Nephromopsis pallescens (Schaer.) Y.S. Park. CH050089 China S 26.96 ± 1.93 44.9
Nephromopsis ornate (Müll. Arg.) Hue. 41359 Korea T 38.21 ± 2.20 63.7
Antifungal Activity of Lichen-forming Fungi Against Colletorichum acutatum 205
Table 1. Continued
Lichen species Collection
number Locality Isolation
methoda
Mycelium growth inhibition
Diam. (mm)b% of control
Nephromopsis asahinae (M. Satô) Räsänen. 40500 Korea S 40.64 ± 2.15 67.7
Nephromopsis pseudocomplicata (Asahina) M.J. Lai CH040025 China S 37.34 ± 1.15 62.2
Parmelia simplicior Hale CH050260 China S 27.69 ± 4.02 46.2
Parmelia laevior Nyl. 40257 Korea S 41.46 ± 0.29 69.1
Parmelia adaugescens Nyl. 40810 Korea S 32.65 ± 2.38 54.4
Parmelia pseudolaevior Asahina. 50069 Korea S 34.71 ± 2.64 57.9
Parmelia omphalodes (L.) Ach. 40356 Korea T 38.11 ± 2.37 63.5
Parmotrema austrosinense (Zahlbr.) Hale. CH050252 China T 40.83 ± 2.79 68.1
Parmotrema ultralucens (Krog) Hale. CH050249 China T 40.83 ± 2.45 68.1
Pannaria leucosticta Tuck. 41227 Korea T 32.41 ± 0.54 54
Phaeophyscia limbata (Poelt) Kashiw. 40014 Korea S 43.20 ± 2.06 72
Phaeophyscia exornatula (Zahlbr.) Kashiw. 40202 Korea T 43.77 ± 1.35 73
Phaeophyscia melanchra (Hue) Hale. 40625 Korea S 41.87 ± 2.06 69.8
Physcia caesia (Hoffm.) Fürnr. 40912 Korea S 39.41 ± 1.05 65.7
Phaeophyscia exornatula (Zahlbr.) Kashiw. 40923 Korea T 43.73 ± 4.76 72.9
Phaeophyscia hirtella Essl. 41166 Korea S 47.47 ± 4.07 79.1
Physcia stellaris (L.) Nyl. 41642 Korea S 42.88 ± 2.06 71.5
Physcia stellaris (L.) Nyl. 50213 Korea S 44.69 ± 0.92 74.5
Phaeophyscia melanchra (Hue) Hale. 40089 Korea T 40.74 ± 0.16 67.9
Punctelia borreri (Sm.) Krog 40051 Korea T 39.00 ± 1.78 65
Pyxine endochrysina Nyl. 41658 Korea T 34.21 ± 0.40 57
Pyxine consocians Vain. 40935 Korea S 30.77 ± 1.07 51.3
Ramalina exilis Asahina. 30474 Korea T 45.67 ± 0.81 76.1
Ramalina intermedia Delise ex Nyl. CH050064 China S 37.45 ± 0.16 62.4
Ramalina pertusa Kashiw. 40628 Korea T 38.90 ± 1.50 64.8
Ramalina litoralis Zahlbr. 50319 Korea S 26.58 ± 1.31 44.3
Ramalina conduplicans Vain. 40402 Korea S 24.28 ± 2.41 40.5
Ramalina sp. CH040302 China S 39.15 ± 2.49 65.3
Ramalina complanata Ach. CH050099 China S 29.89 ± 0.92 49.8
Ramalina yasudae Räsänen. 30330 Korea T 35.69 ± 1.41 59.5
Ramalina almquistii Vain. 30237 Korea S 40.92 ± 0.62 68.2
Ramalina sinensis Jatta. CH040020 China S 45.94 ± 0.26 76.6
Ramalina roesleri (Hochst. ex Schaer.) Hue. CH050380 China T 42.62 ± 1.33 71
Rimelia clavulifera (Räsänen) Kurok. 50038 Korea S 36.80 ± 2.38 61.3
Rimelia clavulifera (Räsänen) Kurok. 50150 Korea S 41.95 ± 1.78 69.9
Rimelia reticulata (Taylor) Hale & A. Fletcher. CH050393 China T 42.61 ± 1.87 71
Rimelia reticulata (Taylor) Hale & A. Fletcher. 40068 Korea T 39.68 ± 3.04 66.1
Stereocaulon commixtum (Asahina) Asahina. 40659 Korea S 44.63 ± 1.92 74.4
Tephromela atra (Huds.) Hafellner. 40191 Korea S 42.84 ± 3.05 71.4
Tuckneraria pseudocomplicata (Asahina) Randlane & Saag 40516 Korea S 41.73 ± 3.15 69.6
Umbilicaria proboscidea (L.) Schrad. CH040077 China S 39.65 ± 0.72 66.1
Umbilicaria kisovana (Zahlbr. ex M. Satô) Kurok. 30221 Korea T 37.52 ± 0.28 62.5
Umbilicaria esculenta (Miyoshi) Minks. 40040 Korea T 24.31 ± 1.12 40.5
Umbilicaria yunnana (Nyl.) Hue. CH050097 China T 40.36 ± 2.10 67.3
Usnea longissima Ach. CH050148 China S 42.25 ± 0.65 70.4
Usnea orientalis Motyka. CH050316 China S 29.94 ± 1.68 49.9
Xanthoparmelia hirosakiensis (Gyeln.) Kurok. 50141 Korea S 38.42 ± 1.27 64
Xanthoria elegans (Link) Th. Fr. 41247 Korea S 34.31 ± 0.58 57.2
Control 60.00
aS; Discharged spore method, T; Tissue culture method.
bThe inhibition zone of mycelial growth of the pathogenic fungus was rated 3 to 5 days after incubation at 18ºC and compared with the control
plate. Data represent the mean and standard deviation of five replications. Bold letters indicate the lichen-forming fungi which showed signifi-
cantly higher antifungal activity against C. acutatum than other lichen-forming fungi tested in this study (P< 0.05, LSD) .
206 Xinli Wei et al.
ever, LFF isolated from lichen species belong to Cetrariod
genera (Cetrelia and Nephromposis) and Ramalina genus
possessed stronger antifungal activity against the target
pathogenic fungus than those isolated from other lichen
genera tested in this study. Mycelial growth of Botryo-
sphaeria dothidea, Botrytis cinerea, Pythium sp., Rhizo-
ctonia solani and Sclerotium cepivorum were completely
inhibited by LFF of Parmelia laevior in our previous study
(Oh et al., 2006). However, it was not the case for C.
acutatum in this study. This suggests that secondary
metabolites produced during LFF culture have differential
sensitivity to various plant pathogenic fungi and the
compounds acted in a species-specific manner.
Methanol or acetone extracts of several lichen thalli were
already proved to have strong antifungal activity against
various plant pathogenic fungi (Gulluce et al., 2006; Halama
and Van Haluwin, 2004). Unlike the previous results using
intact lichen thalli extracts, LFF exhibited different anti-
fungal activity against Colletotrichum fungus in this study.
It is well known that LFF in axenic cultures retain the
capacity to biosynthesize secondary products found in the
lichenized state (Culberson et al., 1992), but the metabolites
produced in the greatest abundance might differ from those
found in the lichen (Miyagawa et al., 1993). Therefore, it
will be very interesting to investigate the compounds
responsible for strong antifungal activity of the LFF in
cultures with comparison of natural lichen substances.
Mass cultivation of the LFF is now under progress in
laboratory conditions for chemical identification of anti-
fungal substances. In conclusion, the secondary metabolites
of LFF in cultures might be of potential use as antifungal
agents and LFF can serve as a novel bioresources to
develop new biofungicides alternative to current fungicides
to control C. acutatum, hot pepper anthracnose pathogenic
fungus.
Acknowledgements
This work was supported in part by Rural Development
Administration program (Grant 20070301-033-016-001-
02-00), Republic of Korea and by NON DIRECTED
RESEARCH FUND (2004), Sunchon National University,
Korea.
References
Arup, U. 2002. PCR techniques and automated sequencing in
lichens. In: Protocols in lichenology: culturing, biochemistry,
ecophysiology and use in biomonitoring, ed. by I. Kranner, R.
P. Beckett and A. K. Varma, pp. 392-411. Springer-Verlag,
New York.
Culberson, C. F., Culberson, W. L. and Johnson, A. 1992. Charac-
teristic lichen products in cultures of chemotypes of the Rama-
lina siliquosa complex. Mycologia 84:705-714.
Ekman, S. 1999. PCR optimization and troubleshooting, with spe-
cial reference to the amplification of ribosomal DNA in
lichenized fungi. Lichenologist 31:517-531.
Fravel, D. R. 2005. Commercialization and implementation of
biocontrol. Annu. Rev. Phytopathol. 43:337-359.
Gulluce, M., Aslan, A., Sokmen, M., Adiguzel, A., Agar, G. and
Sokmen, A. 2006. Screening the antioxidant and antimicrobial
properties of the lichens Parmelia saxatilis, Plastismatia
glauca, Ramalina pollinaria, Ramalina polymorpha and
Umbilicaria nylanderiana. Phytomedicine 13:515-521.
Halama, P. and Van Haluwin, C. 2004. Antifungal activity of
lichen extracts and lichenic acids. BioControl 49:95-107.
Hur, J. S., Harad, H., Oh, S. O., Lim, K. M., Kang, E. S., Lee, S.
M., Kahng, H. Y., Kim, H. W., Jung, J. S. and Koh, Y. J. 2004.
Distribution of lichen flora on South Korea. J. Microbiol. 42:
163-167.
Hur, J. S., Wang, L. S., Oh, S. O., Kim, G. H., Lim, K. M., Jung, J.
S. and Koh, Y. J. 2005. Highland macrolichen flroa of north-
west Yunnan, China. J. Microbiol. 43:228-236.
Kang, B. K., Min, J. Y., Kim Y. S., Park, S. W., Bach, N. V. and
Kim, H. T. 2005. Semi-selective medium for monitoring Col-
letorichum acutatum causing pepper anthracnose in the field.
Res. Plant Dis. 11:21-27.
Kim, J. T., Park, S-Y., Choi, W., Lee, Y.-H. and Kim, H. T. 2008.
Characterization of Colletotrichum isolates causing antracnose
of pepper in Korea. Plant Pathol. J. 24:27-23.
Miyagawa, H., Hamada, N., Sato, M. and Ueno, T. 1993. Hypos-
trepsilic acid, a new dibenzofuran from the cultured lichen
mycobiont of Evernia esorediosa. Phytochem. 34:589-591.
Oh, S.-O., Jeon, H.-S., Lim, K.-M., Koh, Y. J. and Hur, J.-S. 2006.
Antifungal activity of lichen-forming fungi isolated from
Korean and Chinese lichen species against plant pathogenic
fungi. Plant Pathol. J. 22:381-385.
Russell, P. E. 1995. Fungicide resistance: occurrence and manage-
ment. J. Agric. Sci. 124:317-323.
Shin, H. J., Chen, Z. J., Hwang, J. M. and Lee, S. G. 1999. Com-
parison of pepper anthracnose pathogen from Korea and
China. Plant Pathol. J. 15:323-329.
Yamamoto, Y., Miura, Y., Higuchi, M. and Kinoshita, Y. 1993.
Using lichen tissue cultures in modern biology. Bryologist 96:
384-393.
Yoshimura, I., Yamamoto, Y., Nakano, T. and Finnie, J. 2002. Iso-
lation and culture of lichen photobionts and mycobionts. In:
Protocols in lichenology: culturing, biochemistry, ecophysiol-
ogy and use in biomonitoring, ed. by I. Kranner, R. P. Beckett
and A. K. Varma, pp. 3-33. Springer-Verlag, New York.
White, T. J., Bruns, T., Lee, S. and Taylor, J. W. 1990. Amplifica-
tion and direct sequencing of fungal ribosomal RNA genes for
phylogenetics. In: PCR protocols: A guide to methods and
applications, ed. by M. A. Innis, D. H. Gelfand, J. J. Sninsky
and T. J. White, pp. 315-322. Academic Press, New York.
... Ample of studies on lichens have demonstrated their antifungal properties (Wei et al. 2008;Jeon et al. 2009;Kowalski et al. 2011;Guo et al. 2017). These studies support the antifungal nature of several lichens towards many plant pathogenic fungi opening doors of lichen-based biofungicides (Ranković et al. 2007; Tiwari et al. 2011;Garampalli 2014, 2015;Babiah et al. 2015). ...
... Similarly, another LFF Melanelia sp., Ramalina conduplican, Parmelia laevior, Ramalina sp., and Pertusaria sp. showed antifungal activity against several pathogenic fungi Botryosphaeria dothidea, Sclerotium longiseta, Botrytis cinerea, Rhizoctonia solani, Diaporthe actinidiae, Pythium sp. and Pestalotiopsis longiseta (Oh et al. 2006 (Wei et al. 2008). The list of lichens with potential antifungal activity towards pathogenic fungi has been listed in Table 3. ...
Article
Biofungicides use living organisms and their by-products for the management of severe fungal pathogens in crop plants. They have emerged as a key player in sustainable agriculture as they are eco-friendly and cost-effective in comparison to corresponding synthetic chemical fungicides. Depending on the source of origin, biofungicides have been categorised into microbial biofungicides, including bacterial and fungal, while plant based biofungicides comprises of algal, lichen, and angiosperm based biofungicides. A number of strains of Bacillus, Streptomyces and PGPRs presents positive effects and substantially modulates plant-induced and systemic defense responses thereby strengthening plant immunity towards fungal pathogens. Among the fungal based biofungicides, Trichoderma is a well-known biocontrol agent that is utilized from a long time in disease management. Simultaneously, a number of endophytic fungi also affect plant physiological and biochemical defense by increasing the activity of various defense enzymes, gene transcripts as well as antimicrobial proteins that protects the plant from the harmful effects of pathogens. Plant based biofungicides have gained wide applicability in disease management strategies due to their ease in application. Plants contain a variety of essential oils and volatile chemicals causing deleterious effects on the growth of fungal pathogens. With advancements in separation techniques like GC–MS and LC–MS, novel bioactive secondary metabolites have been studied and isolated from different plant extracts and evaluated for biocontrol activity. The present review aims to highlight the different categories of biofungicides, their synthesis, and mode of application as well as delineate their mechanism for biocontrol of fungal pathogens in various crop plants. © 2022, The Author(s), under exclusive licence to Brazilian Society of Plant Physiology.
... Wei et al. (2008) studied cultured mycobiont of 100 Korean and Chinese lichen-forming fungi for their antifungal activity against Colletotrichum acutatum, the causal agent of anthracnose on hot pepper. Among them, Korean Caloplaca flavorubescens (Huds.) ...
... Additionally, it is distributed worldwide (Kirk et al., 2008). Some metabolites of R. conduplicans have possible industrial, pharmaceutical and agricultural uses (Oh et al., 2006;Wei et al. 2008;Vinayaka et al., 2009;Luo et al., 2010), and R. conduplicans is associated with Trebouxia spp., the most common photosynthetic partner in lichens (Honegger, 2008). Therefore, R. conduplicans could be a lichen model for studying secondary metabolites and polyol utilization. ...
Article
In lichen symbiosis, polyol transfer from green algae is important for acquiring the fungal carbon source. However, the existence of polyol transporter genes and their correlation with lichenization remain unclear. Here, we report candidate polyol transporter genes selected from the genome of the lichen-forming fungus (LFF) Ramalina conduplicans. A phylogenetic analysis using characterized polyol and monosaccharide transporter proteins and hypothetical polyol transporter proteins of R. conduplicans and various ascomycetous fungi suggested that the characterized yeast’ polyol transporters form multiple clades with the polyol transporter-like proteins selected from the diverse ascomycetous taxa. Thus, polyol transporter genes are widely conserved among Ascomycota, regardless of lichen-forming status. In addition, the phylogenetic clusters suggested that LFFs belonging to Lecanoromycetes have duplicated proteins in each cluster. Consequently, the number of sequences similar to characterized yeast’ polyol transporters were evaluated using the genomes of 472 species or strains of Ascomycota. Among these, LFFs belonging to Lecanoromycetes had greater numbers of deduced polyol transporter proteins. Thus, various polyol transporters are conserved in Ascomycota and polyol transporter genes appear to have expanded during the evolution of Lecanoromycetes.
... C. acutatum was shown to produce sunken dark brown lesions on maturing fruits causing anthrac-nose in strawberries in Korea and Egypt (Nam et al. 2008;Embaby et al. 2009). Variable Colletotrichum species, i.e. C. capsici, C. coccodes, C. gleosporioides, and C. acutatum, were reported to cause the disease in pepper (Lee et al. 2007;Wei et al. 2008). ...
Article
Full-text available
Colletotrichum gleosporioides causes the anthracnose disease in plants including vegetables and fruits. The pathogenicity of the strains was confirmed by using pepper fruit inoculation assays. The chitinolytic bacterial strains Paenibacillus elgii HOA73, Lysobacter capsici HS124, Streptomyces griseus, Pseudomonas fluorescens, and Paenibacillus ehimensis MA2012 were evaluated against the phytopathogenic fungal strains. The bacteria significantly inhibited C. gleosporioides strain 40003, the inhibition ranging from 17% to 37%. Similarly, 5–41% inhibition of C. gleosporioides 40896 was noticed. Moreover, C. gleosporioides 40965 and 42113 were also inhibited. The n-butanol extracted crude compound of P. ehimensis MA2012 completely inhibited the spore germination of the phytopathogen. Hence the chitinolysis may be considered as an important trait for screening the biocontrol bacteria against anthracnose.
Chapter
Secondary lichens‐related metabolites consisting of aliphatic, cycloaliphatic, aromatic, and terpenic compounds are special and indicate exciting biological and pharmacological activity compared to higher plants. Lichens are an ideal model for research into their bioactive metabolites. The green algae or cyanobacteria form lichen, often together, a symbiotic relationship between the fungus and a partner in the chlorophyll. For several reasons, lichens are valuable organisms. It can be used in the area of natural coloring. Lichens are photobiont and mycobiont composite organisms. Traditionally, across the globe, lichens are used and several examinations have demonstrated the encouraging pharmacology of the lichens, as well as insecticidal action. Many important medicinal values such as antiviral, antibacterial, antifungal, antioxidant, cytotoxic outcome, and others are derived from the special and biologically effective compounds presented in lichen thalli. Many medical approaches to treating such illnesses or disorders like diabetes, Alzheimer's disease, malignancy, and overweightness tend to include the suppression of certain enzymes. The therapeutic potential of lichen, which has an important effect in the Pharma industry, is reflected in all these multiple lichen metabolite activities. This article discusses the biotechnological applications of lichens.
Article
Full-text available
Los líquenes son producto de una asociación simbiótica entre un hongo y alga y/o cianobacteria; esta simbiosis produce una serie de metabolitos secundarios o sustancias liquénicas únicas, las mismas que son aisladas a partir de sus extractos y que han presentado una marcada actividad antibiótica y antifúngica. Considerando que en el Ecuador no se tienen antecedentes acerca de este tipo de estudios, el objetivo planteado fue el evaluar la actividad antifúngica del extracto liquénico de Usnea laevis frente a hongos fitopatógenos.En el presente estudio las sustancias liquénicas almacenadas en el talo de Usnea laevis fueron extraídas con metanol y etanol. La actividad antifúngica in vitro de estos extractos fue probado frente a géneros de hongos fitopatógenos previamente aislados (Aspergillus, Penicillium y Rhizopus stolonifer); añadiéndolo al medio de cultivo Agar Papa Dextrosa (PDA) a una concentración de 0,5%; determinándose el porcentaje de inhibición.Los datos fueron analizados estadísticamente y se realizó la clasificación del extracto en base a su porcentaje de inhibición según la OILB.El extracto metanólico y etanólico de Usnea laevis mostró una mayor efectividad frente a Rhizopus stolonifer, inhibiendo más del 50% de su crecimiento, a diferencia de Penicillium y Aspergillus cuyo porcentaje de inhibición fue mucho menor y mostraron diferencias estadísticamente significativas. El extracto liquénico fue moderadamente tóxico para Rhizopus stolonifer, ligeramente tóxico para Aspergillus sp 1 y Penicillium sp e inocuo para Aspergillus sp 2.
Article
Full-text available
Usnic acid is a unique polyketide produced by lichens. To characterize usnic acid biosynthesis, the transcriptome of the usnic-acid-producing lichen-forming fungus Nephromopsis pallescens was sequenced using Illumina NextSeq technology. Seven complete non-reducing polyketide synthase genes and nine highly-reducing polyketide synthase genes were obtained through transcriptome analysis. Gene expression results obtained by qPCR and usnic acid detection with LCMS-IT-TOF showed that Nppks7 is probably involved in usnic acid biosynthesis in N. pallescens. Nppks7 is a non-reducing polyketide synthase with a MeT domain that also possesses beta-ketoacyl-ACP synthase, acyl transferase, product template, acyl carrier protein, C-methyltransferase, and Claisen cyclase domains. Phylogenetic analysis shows that Nppks7and other polyketide synthases from lichens form a unique monophyletic clade. Taken together, our data indicate that Nppks7 is a novel PKS in N. pallescens that is likely involved in usnic acid biosynthesis.
Article
Full-text available
Antifungal activity of Korean and Chinese lichen-forming fungi (LFF) was evaluated against plant pathogenic fungi of Botryosphaeria dothidea, Botrytis cinerea, Dia-porthe actinidiae, Pestalotiopsis longiseta, Pythium sp., Rhizoctonia solani, and Sclerotium cepivorum. The LFF were isolated from Cladonia scabriuscula, Melanelia sp., Nephromppsis asahinae, Nephromopsis pallescens, Parmelia ǐaevior, Pertusaria sp., Ramalina conduplicans, Ramalina sinensis, Ramalina sp., Umbïlicaria proboscidea and Vulpicida sp. with discharged spore method. The isolates were deposited in the herbarium of Korean Lichen Research Institute (KoLRI) in Sunchon National University. The LFF of Melanelia sp., P. laevior, Pertusaria sp., R. conduplican and Ramalina sp. exhibited strong antifungal activity against all of the pathogenic fungi examined. Among them, LFF of P. laevior showed more than 90% of inhibition in fungal hyphae growth, compared with control. The results imply that LFF can be served as a promising bioresource to develop novel biofungicides. Mass cultivation of the LFF is now under progress in laboratory conditions for chemical identification of antifungal substances.
Article
Full-text available
Lichens are dual organisms formed from a symbiotic association of a fungus, the mycobiont, and an alga and/or cyanobacterium, the photobiont, in which numerous photosynthetic cells are intertwined in a matrix of fungal hyphae. Such definitions raise the question as to whether lichens are technically individual organisms. Many aspects of lichen biology are concerned with the interactions of these different organisms. The separation, isolation and culture of the symbionts offers the scientist a fascinating opportunity to study the components and contribute to the understanding of the nature of the symbiosis in lichens. The culture of mycobionts, photobionts and lichen thalli is central for the establishment of experimental systems for lichens, needed to solve questions associated with symbiosis biology. In addition, they are essential to solving the many fundamental problems of lichen physiology, morphogenesis and molecular biology.
Article
Full-text available
We conducted physiological, pharmacological, and chemical studies using tissue cultures derived from natural lichens. Cultured tissues of about 200 lichen species were initiated from vegetative thalli collected in various regions of the world. The cultures grew on both complex and defined media. Growth was significantly affected by temperature, as well as by carbon and nitrogen sources. Some tissue cultures produced secondary substances (i.e., depsidones and usnic acid), but most acetone extracts did not show the same patterns of TLC spots as the corresponding natural thalli. Some lichen tissue cultures produced more usnic acid than natural thalli. Several pharmacological activities were screened for both tissue cultures and natural lichens.
Article
A total of 33 isolates of Colletotrichum species obtained from pepper, apple, and strawberry in 2001 and 2002 were identified based on mycological characteristics, responses to fungicides carbendazim and the mixture of carbendazim and diethofencarb, and nucleotide sequence analysis of internal transcribed spacer (ITS) region. Most of the Colletotrichum isolates from pepper could be identified as C. acutatum. The pepper isolates produced grey white mycelia that gradually changed to dark gray. The conidia were variable in size, and almost cylindrical in shape with at least one rounded end. They could grow on PDA amended with carbendazim or with the mixture of carbendazim and diethofencarb at 10 μg/ ml, to which the isolates from apple and strawberry were very sensitive. A part of the ITS regions from the Colletotrichum isolates was amplified with the specific primers designed for C. acutatum (Cal-1) or C. gloeo- sporioides (Cgl-3). A primer pair of Cal-1 and a universal primer (ITS4) amplified a 496-bp DNA fragment from all of the pepper isolates examined and one apple isolate. Taken together, it is conclusive that the Cotteto- trichum isolates causing the typical lesion of anthracnose on pepper fruits are C. acutatum.
Article
Sixteen characteristic aromatic lichen products were identified in alga-free fungal cultures derived from single-spore isolates of four chemotypes of the Ramalina siliquosa species complex. The chemistries of many cultures are more complex than those of natural thalli. The compounds identified include the major β-orcinol depsidones that characterize the chemotypes as well as biogenetically reasonable precursors not yet proved in natural thalli. Single-spore progeny from natural thalli can be assigned to chemotype without being lichenized with an alga. This result simplifies the use of secondary-product chemistry as a genetic marker to assess the limits of gene flow between chemotypes in natural populations.
Article
Anthracnose of pepper casued by Colletotrichum spphas been a great problems for pepper production in Korea and China. Especially Colletotrichum gloeosporioides was found predominantly over cultivation areas during infection periods and caused severe rots on bath unripe and ripe fruits that resulted in major yield losses. In this study, comparison of Colletrichum spp.isolated from Korea and China in morphology and pathgenicity, and RAPD-PCR analysis were conducted. Based on morphological characteristics, the pathogen isolates, K1 and C1, K2 and C2, and K3 and C3 were identified as Colletotrichum gloeosporioides (G) type, C. gloeosporioides (R) type and C. coccodes, respectively. in pathogenicity test, K1 and C1, and K2 and C2 were found to attack mainly fruits and to be the most virulent among isolates. K3 and C3 were strongly virulent to leaves and seedling. Pathogenicity between Korean and Chinese isolates. K3 and C3 were strongly virulent to leaves and seedling. Pathogenicity between Korean and Chinese isolates did not show any difference. Results of the RAPD-PCR analyses indicate the varying levels of molecular diversity within and between Colletotrichum spp.of Korea and China. The similarities between K1 and C1, K2 and C2, and K3 and C3 were 85.71%, 71.43% and 50.0% respectively.
Article
It was confirmed that anthracnose pathogen, Colletotrichum acutatum, could specifically grow on PDA amended with /ml of ampicillin and tetracycline, and 100 /ml of mixture with carbendazim and diethofencarb. There was a positive correlation between the number of colony enumerated on semi-selective media and the disease severity on pepper fruits caused by C. acutatum. Using semi-selective media for C. acutatum, the number of pathogen on soil and plant debris infected by anthracnose pathogen was investigated. In plant debris, the colony number of C. acutatum was more than in soil. For the identification of colony appeared on semi-selective media, 10 isolates were selected randomly. They were identified as C. acutatum through PCR using C. acutatum-specific primer.