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Phylogeny, biogeography and evolution of clutch size in South American lizards of the genus Kentropyx (Squamata: Teiidae)

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The lizard genus Kentropyx (Squamata: Teiidae) comprises nine species, which have been placed in three species groups (calcarata group, associated to forests ecosystems; paulensis and striata groups, associated to open ecosystems). We reconstructed phylogenetic relationships of Kentropyx based on morphology (pholidosis and coloration) and mitochondrial DNA data (12S and 16S), using maximum parsimony and Bayesian methods, and evaluated biogeographic scenarios based on ancestral areas analyses and molecular dating by Bayesian methods. Additionally, we tested the life-history hypothesis that species of Kentropyx inhabiting open ecosystems (under seasonal environments) produce larger clutches with smaller eggs and that species inhabiting forest ecosystems (under aseasonal conditions) produce clutches with fewer and larger eggs, using Stearns' phylogenetic-subtraction method and canonical phylogenetic ordination to take in to account the effects of phylogeny. Our results showed that Kentropyx comprises three monophyletic groups, with K. striata occupying a basal position in opposition to previous suggestions of relationships. Additionally, Bayesian analysis of divergence time showed that Kentropyx may have originated at the Tertiary (Eocene/Oligocene) and the 'Pleistocene Refuge Hypothesis' may not explain the species diversification. Based on ancestral reconstruction and molecular dating, we argued that a savanna ancestor is more likely and that historical events during the Tertiary of South America promoted the differentiation of the genus, coupled with recent Quaternary events that were important as dispersion routes and for the diversification at populational levels. Clutch size and egg volume were not significantly different between major clades and ecosystems of occurrence, even accounting for the phylogenetic effects. Finally, we argue that phylogenetic constraints and phylogenetic inertia might be playing essential roles in life history evolution of Kentropyx.
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Molecular Ecology (2009) 18, 262–278 doi: 10.1111/j.1365-294X.2008.03999.x
© 2008 The Authors
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Blackwell Publishing Ltd
Phylogeny, biogeography and evolution of clutch
size in South American lizards of the genus Kentropyx
(Squamata: Teiidae)
FERNANDA DE P. WERNECK,* LILIAN G. GIUGLIANO, ROSANE G. COLLEVATTI‡
and GUARINO R. COLLI*
*Departamento de Zoologia, Universidade de Brasília, 70910-900, Brasília, DF, Brazil, Programa de Pós-Graduação em
Biologia Animal, Universidade de Brasília, 70910-900, Brasília, DF, Brazil, Programa de Pós-Graduação em Ciências
Genômicas e Biotecnologia, Universidade Católica de Brasília, 70790-160, Brasília, DF, Brazil
Abstract
The lizard genus Kentropyx (Squamata: Teiidae) comprises nine species, which have been
placed in three species groups (calcarata group, associated to forests ecosystems; paulensis
and striata groups, associated to open ecosystems). We reconstructed phylogenetic relationships
of Kentropyx based on morphology (pholidosis and coloration) and mitochondrial DNA
data (12S and 16S), using maximum parsimony and Bayesian methods, and evaluated
biogeographic scenarios based on ancestral areas analyses and molecular dating by Bayesian
methods. Additionally, we tested the life-history hypothesis that species of Kentropyx
inhabiting open ecosystems (under seasonal environments) produce larger clutches with
smaller eggs and that species inhabiting forest ecosystems (under aseasonal conditions)
produce clutches with fewer and larger eggs, using Stearns’ phylogenetic-subtraction
method and canonical phylogenetic ordination to take in to account the effects of phylogeny.
Our results showed that Kentropyx comprises three monophyletic groups, with K. striata
occupying a basal position in opposition to previous suggestions of relationships. Addi-
tionally, Bayesian analysis of divergence time showed that Kentropyx may have originated
at the Tertiary (Eocene/Oligocene) and the ‘Pleistocene Refuge Hypothesis’ may not explain
the species diversification. Based on ancestral reconstruction and molecular dating, we
argued that a savanna ancestor is more likely and that historical events during the Tertiary
of South America promoted the differentiation of the genus, coupled with recent Quaternary
events that were important as dispersion routes and for the diversification at populational
levels. Clutch size and egg volume were not significantly different between major clades
and ecosystems of occurrence, even accounting for the phylogenetic effects. Finally, we argue
that phylogenetic constraints and phylogenetic inertia might be playing essential roles in
life history evolution of Kentropyx.
Keywords: biogeography, Kentropyx, life-history evolution, phylogenetic ordination, phylogenetic
subtraction, phylogeny
Received 10 June 2008; revision received 3 October 2008; accepted 5 October 2008
Introduction
A great deal of biotic and abiotic factors may influence lizards’
reproductive cycles (Fitch 1970). Food and water availability
are often considered the main constraints on reproduction
(Magnusson 1987; De Marco 1989). Due to this influence,
local populations tend to adapt their reproductive cycles to the
environment, being under continuous selective pressure
(Roff 1992). As a result, populations and species from
different localities, under distinct environmental conditions,
may exhibit variation in life-history traits, such as repro-
ductive frequency, and number and size of offspring (Fitch
1982, 1985; Brown & Shine 2006).
Correspondence: Fernanda de P. Werneck, Department of Biology,
WIDB, Brigham Young University, Provo, UT84602, USA.
Fax: 801-422-0090; Email: fewerneck@gmail.com
PHYLOGENY, BIOGEOGRAPHY AND CLUTCH SIZE OF KENTROPYX 263
© 2008 The Authors
Journal compilation © 2008 Blackwell Publishing Ltd
Quantitative characteristics, such as clutch size and egg
volume, are essential to the study of life history because
they can elucidate how energy is allocated to reproduction.
The amount of energy available for reproduction and
limiting factors, such as body size and shape, foraging
mode and habitat specificity, may determine the number
and size of offspring (Vitt 1981; Zug et al. 2001). Thus, based
on hypotheses of trade-offs in life-history evolution, an
offspring should represent an optimal compromise between
number and size of eggs that results in maximum survival
of juveniles and gravid females (Stearns 1989; Shine &
Schwarzkopf 1992; Pough et al. 1998). As an adjustment to
different selective pressures, species of nonseasonal and
seasonal environments usually have distinct reproductive
strategies. Fitch (1982) hypothesized that species in tropical
forest (often aseasonal) ecosystems should temporally spread
out their reproductive investments, thus producing more
clutches with fewer and larger eggs. Conversely, species in
open (often seasonal) ecosystems should concentrate repro-
ductive investment during the favourable (rainy) period,
and thus produce larger clutches with smaller eggs (Fitch
1982). This hypothesis has never been adequately tested
within monophyletic groups that have species in both
seasonal and aseasonal environments.
A problem of most comparative studies is that they do
not consider the phylogeny of species under study. In such
a case, it is difficult to determine whether the option for one
reproductive strategy was determined by ecological relations
of the population or by the inheritance of ancestral adap-
tations. Species belong to hierarchical phylogenies, and
thus cannot be treated as independent observations for
the study of covariation among life-history traits (Felsen-
stein 1985b; Harvey & Pagel 1991). Dunham & Miles (1985)
suggested that phylogenetic constraints have a central
importance in reproductive patterns of lizards and snakes
and cannot be ignored in analyses of the life-history
evolution.
The lizard genus Kentropyx (Squamata: Teiidae) is dis-
tributed in South America, east of the Andes (Gallagher &
Dixon 1992). The genus was described by Spix in 1825 and
is distinguished from all other teiid genera by the presence
of keeled ventral scales (Gallagher 1979). The systematics
of Kentropyx had been problematic, with 19 nominal taxa
already proposed, most of which were later considered as
junior synonyms. Gallagher & Dixon (1992) recognized eight
species in three species groups, based on qualitative char-
acteristics of dorsal scales: (i) the calcarata group (K. calcarata,
K. pelviceps and K. altamazonica), with small granular dorsal
and lateral scales, and a clear distinction between the
dorsals and the keeled plate-like supracaudals; (ii) the
paulensis group (K. paulensis, K. viridistriga and K. vanzoi),
with granular dorsals and lateral scales gradually enlarging
towards the tail, where dorsals and supracaudals are almost
indistinct; and (iii) the striata group (K. striata and K. borckiana)
with rows of enlarged plate-like dorsals and granular
lateral scales. This arrangement, however, was based solely
on total similarity without assessing phylogenetic rela-
tionships among species or the monophyly of the groups
proposed. It should be noted that K. borckiana is parthe-
nogenetic and its hybrid origin between K. calcarata and
K. striata has been supported (Cole et al. 1995; Reeder et al.
2002). Through a similarity analysis of mitochondrial
DNA, Reeder et al. (2002) observed that the maternal
ancestor of K. borckiana was K. striata. More recently, we
collected an undescribed species from the Jalapão region
in central Brazil, one of the largest remaining tracts of
undisturbed Cerrado, the largest Neotropical savanna
biome (Oliveira & Marquis 2002). This species seemingly
belongs to the paulensis group and is hereafter referred to
as Kentropyx sp.
Species of the calcarata group occur mostly in forests of
the Amazon Basin, including forest edges, clearings caused
by fallen trees, secondary growth, river margins and
plantation sites; however, some isolated populations of K.
calcarata exist in the Atlantic forest of Brazil (Gallagher &
Dixon 1992; Ávila-Pires 1995). On the other hand, species of
the paulensis group inhabit open ecosystems of the Brazilian
Shield, with K. vanzoi being endemic to the Cerrado, partic-
ularly in areas with sandy soils (Nogueira 2006; Vitt &
Caldwell 1993), and K. viridistriga being endemic to the
flooded savannas of the Chaco-Paraná Basin, in the Pantanal
and Guapodepressions. Finally, species of the striata group
occur in open ecosystems of the Guiana Shield, northern
Amazon Basin, and in some Caribbean islands. Gallagher
& Dixon (1992) identified some isolated populations of K.
striata in northeastern Brazil (Gallagher & Dixon 1992).
Within Teiidae, Kentropyx forms a monophyletic group
with Ameiva, Cnemidophorus and Aspidoscelis (‘cnemido-
phorines’; Vanzolini & Valencia 1965; Gorman 1970; Presch
1974; Reeder et al. 2002; Teixeira 2003; Giugliano et al. 2007).
Gallagher & Dixon (1992) proposed that dorsal scales
increased in size and femoral pores decreased in number
during the evolution of Kentropyx, with the calcarata, pau-
lensis, and striata groups, in this order, being arranged in a
linear progression of increasing size of dorsal scales (and
consequent decreasing number) and decreasing number of
femoral pores. This progression was interpreted as being
related to thermoregulation, such that large numbers of
femoral pores and dorsal scales (smaller in size) are associ-
ated with shade-tolerance in forest species, whereas small
numbers of femoral pores and dorsals (larger) are related
to heat-tolerance in open vegetation species (Gallagher et al.
1986). However, without phylogenetic analyses, the division
of Kentropyx into groups and the interpretation of the
evolution of morphological and ecological traits are merely
speculative.
Gallagher & Dixon (1992) interpreted the current distribu-
tional patterns of Kentropyx as consistent with the ‘Pleistocene
264 F. P. W ER NE CK E T A L .
© 2008 The Authors
Journal compilation © 2008 Blackwell Publishing Ltd
Refuge Hypothesis’: successive climatic and vegetational
cycles during the Pleistocene promoted the expansion and
retraction of species ranges, with speciation occurring
in forest refuges during dry/cold periods, and in savanna
refuges, during wet/hot periods (Haffer 1969, 1982;
Gallagher 1979; Gallagher & Dixon 1992). The presence of
K. striata in open ecosystem enclaves within Amazon and
Atlantic forests and the widely geographically separated
populations of K. calcarata in Amazon and Atlantic forests
apparently support this hypothesis. However, other events
able to explain current distributional patterns, such as
secondary dispersal, were not considered. Moreover, the
importance of the ‘Pleistocene Refuge Hypothesis’ on the
distributional patterns of the South American herpetofauna
has been clearly overestimated (Colli 2005). Ancient historical
events of the Tertiary, like marine transgressions, the arrival
of immigrants from Central and North America, and the
uplift of the Central Brazil Plateau, may have had more
profound influences (Colli 2005).
Herein, we reconstruct phylogenetic relationships of
Kentropyx based on morphology and mitochondrial DNA
data (12S and 16S), using maximum parsimony and Bayesian
methods, and evaluate biogeographic scenarios based on
ancestral areas analyses and molecular dating by Bayesian
methods. We also test the life-history hypothesis that open
ecosystem species of Kentropyx produce larger clutches
with smaller eggs and that forest ecosystems species pro-
duce clutches with fewer and larger eggs, using Stearns’
phylogenetic-subtraction method and canonical phylogenetic
ordination.
Materials and methods
Phylogeny and biogeography
Morphological data. We obtained reproductive and morph-
ological data of Ameiva ameiva and Cnemidophorus grami-
vagus (used as outgroups in phylogenetic analyses), and
Kentropyx from museum specimens (Appendix I; total of
1143 specimens of Kentropyx; Table 1). Morphological data
included pholidosis and coloration patterns (for a detailed
description of morphological characters and states see
Appendix II).
We coded quantitative characters as continuous variables
using step matrix gap-weighting for parsimony analysis
(Wiens 2001). This method attributes different weights to
intervals with different ranges, through a step matrix that
shows costs of transitions between each character state.
For each species sampled, we coded qualitative characters
with intraspecific variation (polymorphism) using the
frequency of derived states (Wiens 1995). We weighed
qualitative characters with no polymorphism by 999 and
polymorphic qualitative characters by 999 divided by the
largest number of steps between two character states, and
thus, the cost of a transformation in quantitative characters is
equivalent to the weight of a polymorphic or no-polymorphic
character (Wiens 2001). Consequently, all analyses using
this weighting scheme produced cladograms with lengths
(and Bremer branch support) multiplied by 999. Thus, we
divided the length and Bremer branch support of those
cladograms by 999, allowing comparisons with other studies.
For Bayesian analyses, we gap-coded quantitative characters
(Thiele 1993), using 0.5 standard deviation as cut-point and
regarded them as ordered. We conducted Bayesian analyses
using MrBayes-ordered standard model (Huelsenbeck &
Ronquist 2001).
Molecular data. We used 12S and 16S mitochondrial
DNA sequences previously published (GenBank–NCBI;
www.ncbi.nlm.nih.gov/) or obtained by us (Table 2). We
extracted whole genomic DNA from liver using DNeasy
tissue kits (QIAGEN) and amplified fragments of nearly
350 bp of the 12S ribosomal gene and of nearly 500 bp of
the 16S gene with 12Sa, 12Sb, 16SaR, and 16Sd primers,
using the same polymerase chain reaction (PCR) conditions
described in Reeder (1995). We sequenced PCR products
on an ABI PRISM 377 automated DNA sequencer (Applied
Biosystems) using DYEnamic ET terminator cycle sequencing
kit (Amersham Pharmacia Biotech), according to manu-
facturer’s instructions, and analysed and edited sequences
using BioEdit 5.09 (Hall 1999). We obtained a multiple
alignment based on parsimony with MALIGN 2.7 (Wheeler
& Gladstein 1994). We assigned gap costs for internal gaps
(2) and leading and trailing gaps (1), but equal weight for
transitions and transversions. All alignments were submitted
to TreeBase (study Accession no. SN3720). For both 12S and
16S mitochondrial DNA sequences, we chose the model of
sequence evolution by hierarchical likelihood ratio tests
(HLRTs) using ModelTest 3.7 (Posada & Crandall 1998).
For the Bayesian combined molecular data (12S +16S), each
sequence had its own independent model of evolution and
model parameters.
Phylogenetic analysis. We conducted phylogenetic analyses
with maximum parsimony (MP) and Bayesian methods,
using the species A. ameiva and C. gramivagus as outgroups.
We excluded Kentropyx borckiana from analyses because of
its hybrid origin (Cole et al. 1995; Reeder et al. 2002), which
precludes a dichotomous tree to correctly represent its
relations with other species of Kentropyx (Frost & Wright
1988). We analysed each character partition (morphology,
12S, 16S) separately and in combination, using paup*
version 4.0b10 (Swofford 1999) and MrBayes version 3.0b4
(Huelsenbeck & Ronquist 2001). For MP analysis, we used
branch-and-bound searches, coding gaps as a fifth state
(Giribet & Wheeler 1999) and assessed the reliability of
results with 1000 bootstrap samples (Felsenstein 1985a)
and Bremer support (Bremer 1994), with MacClade 4.0
PHYLOGENY, BIOGEOGRAPHY AND CLUTCH SIZE OF KENTROPYX 265
© 2008 The Authors
Journal compilation © 2008 Blackwell Publishing Ltd
(Maddison & Maddison 1999) and paup*. Bayesian analyses
started with randomly generated trees and ran for 5.0 ×106
generations, implementing the Metropolis-coupled Markov
chain Monte Carlo method (MC3) (Altekar et al. 2004). We
sampled trees at intervals of 100 generations, producing
50 000 trees. We plotted the log-likelihood scores of the
50 000 trees against generation time to detect stationarity
using Tracer 1.4 (Rambaut & Drummond 2007). We regarded
all sample points before stationarity as burn-in samples
(until 6500th generation) that contained no useful information
about parameters. For each analysis, we conducted four
independent runs to avoid trapping in local optima. The
frequency of any particular clade in the majority-rule
consensus tree of the stationarity stage, from the four
independent runs, represented the posterior probability of
that node (Huelsenbeck & Ronquist 2001).
Molecular dating. We estimated divergence times based on
a Bayesian relaxed molecular clock approach implemented
in MULTIDISTRIBUTE (Thorne et al. 1998; Kishino et al.
2001; Thorne & Kishino 2002). This approach allows the
incorporation of multiple time constraints, and takes into
account both molecular and palaeontological uncertainties
to estimate the variance of divergence times. For this
analysis, we used the most parsimonious tree topology
of the combined analysis (morphological + 12S and 16S
mitochondrial DNA sequences). We calibrated the origin
of the genus based on Giugliano et al. (2007) estimate [29.8
Table 1 Meristic characters of nine species of Kentropyx. Values indicate x± SD, with range in parentheses
Variables
K. altamazonica
(n= 233)
K. borckiana
(n= 4)
K. calcarata
(n= 231)
K. paulensis
(n= 96)
K. pelviceps
(n= 157)
K. striata
(n= 150)
K. vanzoi
(n= 160)
K. viridistriga
(n= 21)
Kentropyx sp.
(n= 21)
Supralabials 12.2 ± 0.6 12.0 ± 0.0 12.1 ± 0.5 12.2 ± 0.6 12.3 ± 0.6 12.0 ± 0.2 12.0 ± 0.3 12.3 ± 0.6 12.1 ± 0.7
(10–14) (12–12) (10–15) (11–15) (10–15) (12–13) (11–14) (12–14) (10–14)
Infralabials 10.2 ± 1.5 8.2 ± 0.5 9.9 ± 1.3 8.7 ± 1.4 10.3 ± 1.7 9.9 ± 1.4 8.7 ± 1.2 7.8 ± 0.7 8.0 ± 0.0
(8–15) (8–9) (8–12) (6–14) (8–14) (6–13) (7–13) (6–9) (8–8)
Collar scales 16.6 ± 1.5 17.5 ± 0.6 16.4 ± 1.6 16.2 ± 1.6 16.9 ± 1.6 13.9 ± 1.1 14.3 ± 1.2 16.1 ± 1.8 15.8 ± 1.5
(13–22) (17–18) (13–22) (12–21) (11–22) (11–17) (12–17) (12–19) (13–18)
Supraoculars 3.1 ± 0.3 3.2 ± 0.5 3.0 ± 0.1 3.1 ± 0.2 3.1 ± 0.3 3.1 ± 0.3 3.1 ± 0.3 3.2 ± 0.4 3.0 ± 0.0
(3–4) (3–4) (3–4) (3–4) (3–5) (3–4) (3–4) (3–4) (3–3)
Parietals 3.0 ± 0.0 3.0 ± 0.0 3.0 ± 0.1 3.0 ± 0.2 3.0 ± 0.1 3.0 ± 0.0 3.0 ± 0.0 3.0 ± 0.0 3.0 ± 0.0
(3–3) (3–3) (3–5) (3–4) (3–4) (3–3) (3–3) (3–3) (3–3)
Postparietals 2.5 ± 0.8 2.7 ± 0.5 2.2 ± 0.4 2.5 ± 0.7 2.3 ± 0.5 2.1 ± 0.4 2.3 ± 0.5 2.6 ± 0.7 2.5 ± 0.7
(2–6) (2–3) (2–5) (2–5) (2–4) (2–5) (2–4) (2–5) (2–4)
Scales around
midbody
107.7 ± 7.8 74.7 ± 2.1 113.8 ± 9.7 78.4 ± 7.9 111.9 ± 7.5 47.8 ± 4.3 83.8 ± 6.6 75.0 ± 5.1 71.8 ± 7.2
(89–135) (72–77) (93–140) (61–100) (94–132) (38–64) (71–106) (66–83) (61–90)
Transverse rows
of ventrals
33.3 ± 1.1 30.3 ± 0.5 32.5 ± 1.2 32.2 ± 1.1 31.2 ± 1.1 31.7 ± 0.9 31.6 ± 1.1 33.9 ± 1.2 32.7 ± 0.8
(30–36) (30–31) (29–35) (30–35) (29–34) (29–34) (29–35) (32–36) (31–34)
Ventrals in
transverse row
15.6 ± 0.8 16.0 ± 0.0 14.3 ± 0.7 13.9 ± 0.7 14.7 ± 0.9 14.6 ± 0.9 12.7 ± 0.9 14.5 ± 0.8 14.0 ± 0.0
(13–17) (16–16) (13–16) (12–16) (14–16) (13–16) (12–14) (14–16) (14–14)
Femoral pores 33.1 ± 2.8 25.5 ± 2.4 37.8 ± 3.4 18.7 ± 2.5 40.3 ± 3.3 13.1 ± 1.2 10.3 ± 1.9 23.1 ± 2.5 21.1 ± 1.3
(20–40) (23–28) (28–46) (12–24) (32–49) (10–16) (6–16) (18–28) (19–24)
Prefemorals 12.7 ± 1.8 10.0 ± 0.0 12.4 ± 1.7 8.6 ± 1.1 11.9 ± 1.4 7.3 ± 0.6 7.6 ± 0.9 8.9 ± 0.9 8.8 ± 0.6
(9–19) (10–10) (7–17) (6–11) (8–16) (6–9) (6–10) (7–11) (8–10)
Prefemorals rows 15.4 ± 1.2 14.3 ± 0.5 16.2 ± 1.2 12.9 ± 1.0 16.1 ± 1.0 13.9 ± 0.8 12.2 ± 0.9 15.0 ± 1.5 13.0 ± 0.7
(12–20) (14–15) (12–19) (11–15) (14–18) (12–16) (10–14) (12–18) (11–14)
Infratibiais rows 11.6 ± 0.9 11.5 ± 1.0 11.0 ± 0.9 9.3 ± 0.9 11.5 ± 1.2 9.0 ± 0.8 8.4 ± 0.7 9.6 ± 0.8 7.9 ± 0.6
(9–14) (10–12) (9–15) (8–11) (9–15) (7–11) (7–11) (8–11) (7–9)
Preanals 4.7 ± 0.6 4.5 ± 0.6 4.6 ± 0.6 4.0 ± 0.5 4.6 ± 0.5 4.3 ± 0.5 3.8 ± 0.5 4.3 ± 0.5 4.5 ± 0.6
(4–6) (4–5) (4–6) (3–5) (3–6) (3–5) (3–5) (4–5) (4–6)
Fourth finger
lamellae
18.8 ± 1.4 18.0 ± 0.8 17.1 ± 1.1 15.1 ± 1.2 17.4 ± 1.2 16.1 ± 1.0 15.8 ± 1.0 16.2 ± 1.3 15.4 ± 0.7
(15–22) (17–19) (15–23) (12–18) (14–20) (13–19) (13–18) (14–20) (14–17)
Fourth toe
lamellae
27.3 ± 1.7 28.0 ± 0.8 26.5 ± 1.5 22.9 ± 1.9 25.8 ± 1.7 24.5 ± 1.3 23.4 ± 1.4 25.1 ± 1.5 21.7 ± 1.2
(20–33) (27–29) (22–32) (18–28) (21–31) (22–28) (20–28) (23–29) (20–24)
Dorsals 164.0 ± 17.4 118.0 ± 3.5 157.6 ± 10.0 129.5 ± 10.6 143.9 ± 9.4 84.1 ± 3.9 143.7 ± 9.2 134.0 ± 11.4 118.3 ± 5.7
(130–207) (115–121) (132–186) (106–155) (119–182) (75–93) (123–164) (116–156) (108–129)
Scales around
tail (15)
19. ± 1.6 16.5 ± 0.6 17.2 ± 1.6 15.5 ± 1.6 19.6 ± 1.5 18.2 ± 1.0 14.7 ± 1.2 17.6 ± 1.4 16.8 ± 1.1
(16–22) (16–17) (14–22) (13–19) (16–23) (15–28) (12–19) (15–20) (14–18)
266 F. P. W ER NE CK E T A L .
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million years ago (Ma)] and confidence intervals (lower
bound 15.7 Ma and upper bound 48.4 Ma).
Dispersal-vicariance analysis. We inferred ancestral areas
based on parsimony, using DIVA 1.1 (Ronquist 1997), which
searches for optimal distribution of ancestral nodes that
minimize dispersal and extinction events (higher costs
events) (Ronquist 1997). We used five areas in the analysis,
corresponding to four large geological areas of the South
American Platform mostly formed during the Tertiary
(Almeida et al. 2000) and important for the diversification
of the South American herpetofauna (Colli 2005). We also
included the Atlantic Forest, corresponding to peripheral
records of Kentropyx calcarata. Thus, the areas were: (A)
Guianan Shield, (B) Amazon Basin, (C) Atlantic Forest, (D)
Brazilian Shield, and (E) Chaco-Paraná Basin (Fig. 1).
Life-history parameters
We considered females containing oviductal eggs, vitellogenic
follicles or corpora lutea as reproductive, and estimated
clutch size based on the number of eggs or vitellogenic
follicles. For reproductive analyses, we removed, counted,
and measured length and width (with digital calipers to
0.01 mm) of oviductal eggs. We calculated egg volume
with the formula for a spheroid:
where w is egg width and l is egg length. For each
individual lizard, we also measured the snout-vent length
(SVL) to 1 mm, with digital calipers.
We assessed interspecific differences in clutch size and
mean egg volume of Kentropyx, using the analysis of cov-
ariance, with SVL as the covariate, and the Tukey HSD test,
for a posteriori multiple comparisons of species means. To
assess differences in clutch size and mean egg volume of
Kentropyx between forest and open vegetation ecosystems
(calcarata group in forests; paulensis and striata groups in
open vegetations) and among all species of Kentropyx, we
built linear mixed-effects models, with species as a nested
random effect and SVL as a covariate. We chose this
approach (i) because of significant correlations between
SVL vs. clutch size (r= 0.62, t207 = 11.32, P< 0.001) and SVL
vs. mean egg volume (r= 0.45, t50 = 3.54, P< 0.001), (ii)
because the design was unbalanced, and (iii) to avoid
inflation of type I Error by pseudoreplication (degrees of
freedom should be based on species, not on individual
lizards). We performed these statistical analyses using r
version 2.7.0 (R DCT 2008).
Stearns phylogenetic-subtraction method and canonical
phylogenetic ordination
We used Stearns’ phylogenetic subtraction method (SPSM,
Stearns 1983; Harvey & Pagel 1991) and canonical phylo-
genetic ordination (CPO; Giannini 2003) to examine the
influence of habitat (major vegetation type of occurrence) on
Table 2 Species, locality, collection, collection number and GenBank Accession number
Species Locality Collection Tag GenBank Accession no.
A
meiva ameiva 1 Peru: Cuzco Amazônico SBH 267103 12S – AY359473, 16S – AY359493
Cnemidophorus gramivagus Venezuela: Portuguesa ALM 8199 12S – AY046432, 16S – AY046474
Kentropyx altamazonica Peru: Loreto KU 205015 12S – AY046456, 16S – AY046498
Kentropyx altamazonica Venezuela: Tapirapeco AMNH R-134175 12S – AY046455, 16S – AY046497
Kentropyx calcarata 1 Guyana: Warniabo Creek AMNH R-140967 12S – AY046458, 16S – AY046500
Kentropyx calcarata 2 Brazil: Vila Rica-MT MTR 978224 12S – AF420707, 16S – AF420760
Kentropyx pelviceps Ecuador: Sucumbios OMNH 36502 12S – AY046459, 16 s – AY046501
Kentropyx striata Guyana: Southern Rupununi Savanna AMNH R-139881 12S – AY046460, 16S – AY046502
Kentropyx paulensis 1* Brazil: Paracatu -MG CHUNB 26031 12S – EU345185, 16S – EU345179
Kentropyx paulensis 2* Brazil: Paracatu -MG CHUNB 26032 12S – EU345187, 16S – EU345181
Kentropyx vanzoi 1* Brazil: Vilhena – RO CHUNB 11631 12S – EU345191, 16S – EU345177
Kentropyx vanzoi 2* Brazil: Vilhena – RO CHUNB 11644 12S – EU345188, 16S – EU345178
Kentropyx sp. 1* Brazil: Mateiros-TO CHUNB 41296 12S – EU345192, 16S – EU345184
Kentropyx sp. 2* Brazil: Mateiros-TO CHUNB 41299 12S – EU345190, 16S – EU345180
K. viridistriga 1* Brazil: Mato Grosso UFMT 1270 12S – EU345189, 16S – EU345182
K. viridistriga 2* Brazil: Mato Grosso UFMT 2375 12S – EU345186, 16S – EU345183
ALM, field series of Allan L. Markezich, Black Hawk College, Moline, IL; AMNH, American Museum of Natural History; CHUNB, Coleção
Herpetológica da Universidade de Brasília; KU, Natural History Museum, University of Kansas; MTRs, from Miguel Trefaut Rodrigues
(IBUSP and MZUSP, São Paulo, Brazil), OMNH, Oklahoma Museum of Natural History, University of Oklahoma; SBH, Tissue collection
of S. Blair Hedges, Pennsylvania State University; UFMT, Universidade Federal do Mato Grosso, Mato Grosso, Brazil. Asterisks correspond
to sequences provided by our study.
Vw l
=
4
3 2 2
2
π,
PHYLOGENY, BIOGEOGRAPHY AND CLUTCH SIZE OF KENTROPYX 267
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clutch size and egg volume, independently of phylogenetic
relationships. We performed SPSM through multiple linear
regressions between clutch size and egg volume (dependent
variables) and the phylogenetic information (independent
variables), which consisted of binary variables representing
all monophyletic groups of Kentropyx, based on a given
topology (defined in Fig. 4A). Next, we used regression
residuals, representing the variation not attributed to
phylogenetic effects, to evaluate the influence of vegetation
type upon clutch size and egg volume, using the analysis of
covariance (ancova) with SVL as covariate. We conducted
these analyses using r version 2.7.0 (R DCT 2008).
CPO is a modification of canonical correspondence
analysis (CCA, Ter Braak 1986), a constrained multivariate
ordination technique that relates the variation in a matrix
of dependent variables with another matrix of independent
variables, maximizing their correlations (Ter Braak 1986;
Giannini 2003). The significance of the association between
each monophyletic group and variables of interest is tested
by randomization of one or both of the data sets. In our
CPO, one of the matrices (Y) contained reproductive data
(clutch size and egg volume) measured over the species of
Kentropyx, whereas the other matrix (X) consisted of a tree
matrix that contained all monophyletic groups of a given
topology, each coded separately as a binary variable
(Fig. 4A) and major vegetation type of occurrence of each
species of Kentropyx. We used SVL as a covariate in CPO. The
analysis thus consisted of finding the subset of groups (columns
of X) that best explained the variation in Y, independently
of SVL, using CCA coupled with Monte Carlo permutations.
We performed CPO in Canoco 4.5 for Windows (Ter Braak &
Smilauer 2002), using the following parameters: symmetric
scaling, biplot scaling, downweighting of rare species, manual
selection of environmental variables (monophyletic groups),
9999 permutations, and unrestricted permutations.
Results
Phylogenetic analysis and biogeographic scenarios
Morphological phylogeny. The maximum-parsimony analysis
recovered a single most-parsimonious tree (Fig. 2A)
with 77 steps (CI = 0.634, RI = 0.570). Despite low branch
support values, the topology indicated the monophyly of
two groups: a forest clade consisting of K. altamazonica,
K. calcarata, and K. pelviceps and an open vegetation clade
consisting of K. striata, K. vanzoi, K. paulensis, K. viridistriga,
and Kentropyx sp. (Fig. 2A). Within the open vegetation
clade, K. striata is sister to a clade comprising K. vanzoi, K.
Fig. 1 Geographic areas used in the DIVA analysis. A: Guianan
Shield, B: Amazon Basin, C: Atlantic Forest, D: Brazilian Shield,
E: Chaco-Paraná Basin. Fig. 2 Kentropyx phylogeny inferred from morphological data. (A)
Most parsimonious tree, with bootstrap and Bremer support
values, respectively. Bremer support values are not absolute
numbers because they were divided by 999 in order to compensate
the character weighting. (B) Tree inferred by Bayesian analysis,
with posterior probability values.
268 F. P. W ER NE CK E T A L .
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paulensis, K. viridistriga, and Kentropyx sp., occupying a
basal position among these species. The Bayesian analysis
produced a similar topology with a polytomy uniting
species of the forest clade (Fig. 2B).
Molecular data. We obtained five equally parsimonious
alignments for 12S sequences, with slight differences
among them, but only one most parsimonious alignment
was found for 16S sequences. We carried out phylogenetic
analyses on each of the five 12S alignments and obtained a
single topology, with small differences in bootstrap indices
and Bremer support (results not shown). Thus, we arbitrarily
chose one of the alignments to be used in the following
analyses (TreeBase Accession no. SN3720). The likelihood-
ratio test implemented in ModelTest favoured the TrN + G
model of sequence evolution [Tamura–Nei model with
a gamma distribution parameter; (Tamura & Nei 1993)]
for both 12S and 16S. Table 3 depicts the inferred base
frequencies, the ratio of invariable sites, and the gamma
distribution parameter.
The multiple alignments of 12S sequences generated a
fragment of 333 base-pair characters, with 67 informative
characters. An unweighted branch-and-bound search
produced a single most parsimonious tree with 185 steps
(CI= 0.762, RI = 0.777), placing K. striata at the base of the tree,
followed by a clade containing K. viridistriga, K. paulensis,
and Kentropyx sp., and another formed by K. vanzoi, K.
altamazonica, K. pelviceps, and K. calcarata. Except for the
placement of K. vanzoi, the other groupings had high
branch support values. The consensus tree obtained by
Bayesian analysis under the TrN + G model of evolution
had some incongruences with the MP tree, with a single
well-supported group formed by K. viridistriga, K. vanzoi,
K. paulensis, and Kentropyx sp. (paulensis group).
For the 16S gene, we obtained a fragment with 446
positions and 84 informative characters. We found two
equally most parsimonious trees with 224 steps (CI = 0.665,
RI = 0.706), with three well-supported groups: a clade
formed by K. viridistriga, K. paulensis, and Kentropyx sp.,
another formed by K. paulensis and Kentropyx sp. and a
third consisting of K. striata in basal position (striata group).
These monophyletic groups were also recovered by MP
and Bayesian analyses based on the 12S sequences. The
consensus tree obtained by Bayesian analysis under the
TrN + G model of evolution was consistent with the MP
tree, containing the same three groups.
The MP analysis of the combined molecular data (12S
+ 16S) resulted in one most parsimonious tree (Fig. 3A)
with 413 steps (CI = 0.702, RI = 0.728). The MP tree strongly
supported K. striata as the basal species (striata group),
followed by a clade consisting of K. altamazonica, K. calcarata
and K. pelviceps (the forest-dwelling calcarata group) and
another formed by K. vanzoi, K. viridistriga, K. paulensis, and
Kentropyx sp. (paulensis group). The Bayesian analysis
resulted in a different topology (Fig. 3B) but also strongly
supported the monophyly of the paulensis group.
Combined data: DNA and morphology. The combined data
included 779 molecular and 49 morphological characters,
with 156 informative characters. The MP analysis produced
a single most parsimonious tree with 454 steps (CI = 0.714,
Table 3 Parameters of molecular substitution model selected
b
y ModelTest for 12S and 16S regions
DNA
region
Base
frequencies
Substitution
frequency
Gamma
distribution (G
)
12S A = 0.3323 A-C = 1.0000 0.2503
C = 0.2428 A-G = 3.8806
G = 0. 1721 A-T = 1.0000
T = 0.2288 C-G = 1.0000
C-T = 12.9889
G-T = 1.0000
16S A = 0.3499 A-C = 1.0000 0.1266
C = 0.2571 A-G = 6.1200
G = 0.1642 A-T = 1.0000
T = 0.2288 C-G = 1.0000
C-T = 8.3267
G-T = 1.0000
Fig. 3 Kentropyx combined mtDNA phylogeny inferred fro
m
combined 12S and 16S sequences. (A) Most parsimonious tree,
with bootstrap and Bremer support values, respectively. (B) Tree
inferred by Bayesian analysis using the TrN + G model, with
posterior probability values.
PHYLOGENY, BIOGEOGRAPHY AND CLUTCH SIZE OF KENTROPYX 269
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RI = 0.573, Fig. 4A). The MP tree presented three major
well-supported clades, corresponding to: (i) striata group
(at the base of the tree); (ii) calcarata group, and (iii)
paulensis group. The Bayesian analysis resulted in a similar
topology, except for the position of K. striata, which is a
sister species of the paulensis group forming a clade that
includes all open vegetations species (Fig. 4B). To investigate
if different coding strategies adopted for MP and Bayesian
analysis could be influencing the incongruent results, we
repeated MP using gap-coding for quantitative characters
(Thiele 1993), but we found exactly the same topology, with
small differences in branch support (results not shown).
In summary, relationships within and between calcarata
and paulensis groups are well established in both MP and
Bayesian analysis (Fig. 4). Conversely, the two approaches
disagree only in the placement of K. striata, either placed in
a basal position related to all other species (MP) or in a
more derived position as sister taxon of the paulensis group
(Bayesian). Based on the larger number of informative
characters supporting the relationships of K. striata (6
morphological and 13 molecular in the MP topology; 5/0
in the Bayesian topology), on higher nodal support values
for the placement of K. striata (even if nodal support and
posterior probabilities are not directly comparable), and
on the smaller number of assumptions, we favoured the
topology recovered by MP for performing the analyses
that follow.
Molecular dating. The molecular dating analysis indicated
an early diversification of Kentropyx species mostly during
the Miocene (Fig. 5). According to our analysis, K. striata
was the first species to diverge during the Late Oligocene–
Early Miocene, and the last divergence was between K.
paulensis and Kentropyx sp. during the Late Miocene–Early
Pliocene. The calcarata and paulensis groups probably
diverged in the Early–Middle Miocene and the only
diversification that took place during the Quaternary was
among populations within species (Fig. 5).
Fig. 4 Kentropyx phylogeny inferred from
combined molecular (12S + 16S) and
morphological data. (A) Most parsimonious
tree, with bootstrap and Bremer support
values, respectively. Bremer support values
are not absolute numbers because they
were divided by 999 in order to compensate
the character weighting. (B) Tree inferred
by Bayesian analysis using the TrN + G
model, with posterior probability values.
Letters above clades correspond to mono-
phyletic groups of Kentropyx used as
individual groups in canonical phylogenetic
ordination.
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Dispersal–vicariance analysis. The DIVA analysis found two
equally most parsimonious reconstructions, with four
dispersal events each during the evolution of Kentropyx
(Fig. 6). In both reconstructions, the divergence of K. striata
was due to a vicariance event that isolated this group in the
Guianan Shield. In addition, both reconstructions indicate
that the divergence of the calcarata (in the Amazon Basin)
and paulensis (in the Brazilian Shield) groups was due to
vicariance. The two reconstructions differ in whether the
common ancestor of all living species of Kentropyx was
restricted to the Guianan and Brazilian Shields (Fig. 6A) or
if it also inhabited the Amazon Basin (Fig. 6B). The first
reconstruction implies that, after the divergence of K.
striata by vicariance and isolation in the Guianan Shield,
the common ancestor of the calcarata and paulensis groups
occupied the Amazon Basin via dispersal (Fig. 6A). According
to the second reconstruction, the common ancestor of all
living species of Kentropyx was widespread, occupying
the Amazon Basin and the Brazilian and Guianan Shields
due to an earlier dispersal event (Fig.6B). Both reconstructions
require one dispersal event of K. calcarata into the Atlantic
Forest and another involving the common ancestor of
K. viridistriga, K. paulensis, and Kentropyx sp. into the
Chaco-Paraná Basin.
Reproduction life-history evolution
Female reproduction. We obtained reproductive data from
all nine species of Kentropyx, but had no reproductive
female of Kentropyx sp. (Table 4). For data analysis, we
considered only reproductive females containing oviductal
eggs or vitellogenic follicles. Mean clutch size ranged from
3.31 (K. vanzoi) to 7.33 (K. viridistriga) (Table 5). For some
species, our results indicated clutch sizes largely different
from previous literature reports. For instance, previous
studies indicate clutches of K. viridistriga of 6–7 eggs,
whereas we recorded a maximum clutch size of 12 eggs
(Table 5). Clutch size differed significantly among species
(irrespective of habitat), independently of SVL (ancova
F7,200 = 12.97, P< 0.001). Based on post hoc Tukey HSD tests,
we found that clutch size of Kentropyx pelviceps (adjusted
mean ± SE: 3.84 ± 0.23) was significantly smaller than
Fig. 5 Chronogram of Kentropyx evolution based on the combined
morphological and molecular data, with divergence times estimated
from a Bayesian relaxed molecular clock approach. Boxes indicate
mean divergence time ± one standard deviation.
Fig. 6 Reconstructed ancestral distributions for each node on the
most parsimonious solutions obtained that consider (A) Guianan
and Brazilian Shield as ancestral areas or (B) Amazon Basin as an
ancestral area as well.
Table 4 Distribution of females of nine species of Kentropyx,
according to the reproductive condition
Species
Non reproductive
females
Reproductive
females
Total of
females
K. altamazonica† 70 38 108
K. borckiana§ 1 1 1
K. calcarata† 34 56 90
K. paulensis‡ 8 19 27
K. pelviceps† 33 31 64
K. striata§ 68 45 113
K. vanzoi‡ 26 13 39
K. viridistriga‡ 1 7 8
Kentropyx sp.‡ 9 0 9
calcarata group; paulensis group; §striata group.
PHYLOGENY, BIOGEOGRAPHY AND CLUTCH SIZE OF KENTROPYX 271
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K. altamazonica (5.70 ± 0.16), K. calcarata (5.02 ± 0.14), and
K. striata (5.89 ± 0.15), whereas K. striata had significantly
larger clutches than K. calcarata (Tukey HSD, P< 0.05).
In addition, clutches of K. viridistriga (7.67 ± 0.41) were
significantly larger than all other species of Kentropyx.
Species differ significantly in mean egg volume, indepen-
dently of SVL (ancova F6,44 = 6.60, P< 0.001). Based on
post hoc Tukey HSD tests, mean egg volume of K. striata
(adjusted mean ± SE: 671.40 ± 53.03 mm3) was significantly
smaller than K. calcarata (928.45 ± 39.20 mm3) and K. pelviceps
(1112.59 ± 71.29 mm3), whereas mean egg volume of K.
pelviceps was larger than K. altamazonica (709.28 ± 40.61mm3).
However, there was no difference between forest and
open-vegetation species in clutch size (forest: 5.5 ± 1.1;
open-vegetation: 4.9 ±1.6; F1,6 =5.22; P= 0.06), or egg volume
(forest: 4= 868.42 ± 201.46 mm3, n= 36; open-vegetation:
4= 650.20 ± 164.17 mm3, n= 16; F1,5 = 4.12; P= 0.10),
independently of SVL.
CPO and stearns phylogenetic-subtraction method. Multiple
linear regressions from the Stearns’ phylogenetic subtraction
method revealed no significant phylogenetic effects on
clutch size (F4,2 = 0.645, P= 0.683) or egg volume (F4,2 = 2.003,
P= 0.359) of Kentropyx. An ancova on the regression
residuals revealed no significant influence of major habitat
type on clutch size (F1,4 = 0.313, P= 0.605) or egg volume
(F1,4 = 0.603, P= 0.481), independently of phylogenetic
structure. Moreover, SVL was significantly correlated with
both clutch size (r= 0.768, t= 2.683, P= 0.044) and egg
volume (r= 0.936, t= 5.927, P< 0.001). Monte Carlo
permutations from CPO revealed no significant effects of
phylogenetic structure or habitat type on reproductive
parameters of Kentropyx (Table 6).
Discussion
Phylogenetic relationships and historical biogeography of
Kentropyx
The total evidence reconstructions, based on morphological
and molecular data, supported the monophyly of the
three phenetic groups of Kentropyx previously recognized
(Gallagher 1979), both using MP and Bayesian methods.
However, our results differ fundamentally from previous
proposals in the placement of K. striata (which represents
the striata group). According to our MP combined analysis,
K. striata is the most basal, and not the most derived species
of Kentropyx. Gallagher & Dixon (1992) advocated the
Table 5 Clutch size and egg volume (in mm3) of eight species of Kentropyx observed in this study and obtained from the literature. Values
indicate x± SD, sample size (in parentheses), and range (only for clutch size)
Species
Clutch size
(this study)
Egg volume
(this study)
Clutch size
(literature) Source†
K. altamazonica 5.45 ± 1.11 (38) 713.45 ± 127.94 (14) 2,4 1
3–9
K. borckiana 6 (1) 5,9 2
K. calcarata 5.63 ± 1.23 (56) 921.16 ± 149.13 (16) 3,7 1,2,3,4
3–9
K. paulensis 3.90 ± 0.78 (19) 528.94 ± 189.10 (4) 3–5 5
3–6
K. pelviceps 5.52 ± 0.85 (31) 1089.39 ± 200.25 (6) 5–8 6
4–7
K. striata 5.84 ± 1.72 (45) 670.65 ± 135.69 (8) 3–10 1,7,8
3–12
K. vanzoi 3.31 ± 1.18 (13) 510.11 (1)
(1–6)
K. viridistriga 7.33 ± 2.34 (6) 804.06 ± 87.42 (3) 6–7 2
(6–12)
†1- Ávila-Pires (1995); 2- Gallagher & Dixon (1992); 3- Vitt (1991); 4- Magnusson & Lima (1984); 5- Anjos et al. (2002); 6- Vitt et al. (1995);
7- Dixon et al. (1975); 8- Vitt & Carvalho (1992).
Table 6 Effect of monophyletic groups and ecosystems on the
reproductive features of Kentropyx. Clade labels according to Fig. 4
Groups Variation F P
A < 0.01 0.190 0.7692
B < 0.01 0.122 0.7143
D < 0.01 0.411 0.5225
E < 0.01 0.050 0.8132
Ecosystems < 0.01 0.122 0.7063
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lower number of dorsals (because of their larger sizes) and
femoral pores of K. striata as an adaptation for dry, open
ecosystems and as a derived condition relative to the
paulensis and calcarata groups, since other teiid genera do
not share these character states (Gallagher & Dixon 1992).
However, even if the phenetic grouping proposed previously
(Gallagher & Dixon 1992) matches the phylogenetic
relationships (this study), the relations among groups
should not necessarily follow the evolution of a single
character. The same sort of gene tree vs. species tree incon-
gruence problems deriving from single gene phylogenies
(Doyle 1997; Maddison 1997) can also occur for a single
morphological character phylogeny. Furthermore, correla-
tions between scale counts and surface area available for
thermoregulation or environmental properties are not
clear and straight. Controversial results indicate both
positive (Soulé & Kerfoot 1972; Malhotra & Thorpe 1997;
Sanders et al. 2004) and negative (Horton 1972; Lister 1976)
correlations between number of scales (inversely propor-
tional to their sizes) and drier environments. In addition,
Gallagher & Dixon (1992) used this character evolution
scenario and the current species distribution to conclude
that the ancestral Kentropyx ‘proceeded from a forest proto-
Kentropyx stock, derived from an Ameiva-Cnemidophorus-like
ancestor’ and that Quaternary refuge events promoted the
diversification of the genus, with secondary colonization
of drier, open environments. In summary, previous studies
addressing Kentropyx evolution proposed phylogenetic
relationships and biogeographic scenarios for the genus
without implementing rigorous phylogenetic analyses,
using alternative data sets, or including any biogeographic
reconstruction.
Our evolutionary scenario implies that Kentropyx striata
was the first species to diverge in the genus, at Late Oli-
gocene–Early Miocene, and that enlargement of dorsal
scales occurred early in the evolution the genus, with a
possible reversal occurring later in the calcarata group. The
basal divergence between K. striata (a Guianan Shield species)
and other species of Kentropyx is paralleled by other vertebrate
groups and concordant with a basal Brazilian/Guianan
Shield split, frequently attributed to Miocene marine intro-
gressions (Rasanen et al. 1995; Webb 1995; Ribas et al. 2005;
Noonan & Wray 2006; Garda & Cannatella 2007). Most of
Kentropyx diversification occurred at the Oligocene/Miocene,
a period fundamentally relevant for the diversification of
South America’s fauna (Gamble et al. 2008).
The period of origin of Kentropyx (Eocene/Oligocene)
was marked by savanna expansion in South America
(Giugliano et al. 2007) and is much more ancient than the
previously suggested origin and diversification during the
Quaternary (Gallagher & Dixon 1992). Thus, the ‘Pleistocene
Refuge Hypothesis’ has only limited importance for the
diversification of Kentropyx species, being able to explain
only the recent diversification of populations. This and the
DIVA results suggest that the ancestor of Kentropyx was not
a forest-dweller as previously proposed (might be both
present in the Amazon Basin or totally non-forest). Given
that the close relatives of Kentropyx are primarily open
vegetation taxa even when occurring in the Amazon Basin,
an open vegetation ancestor is more plausible (Fig. 6A).
Therefore, savannas were likely the centre of origin of the
genus, instead of Amazonian forest, and successive Tertiary
events played a significant role in the differentiation of
living species. Accordingly, the distribution of species of the
calcarata group in the Amazon Basin is better explained as
a more recent dispersal, after the beginning of the marine
retraction.
Both most parsimonious DIVA reconstructions required
a dispersal event of K. calcarata into the Atlantic Forest.
Faunal and floral affinities between Amazon and Atlantic
forests are extensively documented (Andrade-Lima 1982;
Oliveira-Filho & Ratter 1995; Silva 1995; Bates et al. 1998;
Costa 2003). Older vicariance connections might be respon-
sible for some of these affinities, but most might be attributed
to one of the several more recent (Quaternary) forest corridors
proposed, acting as dispersal routes linking these forests
(Andrade-Lima 1982; Rizzini 1963, 1979; Bigarella et al.
1975; Oliveira-Filho & Ratter 1995). As a result, considering
the recent divergence between the two forest populations
of K. calcarata included here (3.4 Ma), the main distribution
of this species in eastern Amazonia and the occurrence of
Quaternary forest corridors previously connecting Amazon
and Atlantic Forests, the dispersal scenario proposed by
DIVA is supported.
Independent of the character partition analyzed and
optimality criteria adopted, some relationships were
typically recovered with high bootstrap and Bremer nodal
support and posterior probabilities values, such as the sister
relationship between K. paulensis and Kentropyx sp. and
between these two species and K. viridistriga. Further, the
monophyly of the paulensis group was well-supported, in
contrast to the calcarata group. Genetic population studies
might be useful to reveal higher levels of genetic similarity
and possible gene flow among species of the calcarata
group. The monophyly of the paulensis group corroborates
the hypotheses that the three emergent large land blocks
(Guianan Shield, Brazilian Shield, and Eastern base of the
Andes) during marine introgressions in the Tertiary (Miocene)
of South America would bear monophyletic taxa when
compared to lowlands (Aleixo 2004; Rasanen et al. 1995;
Webb 1995). This scenario was already corroborated from
the point of view of different groups of vertebrates (Aleixo
2004; Ribas et al. 2005; Noonan & Wray 2006; Garda &
Cannatella 2007).
In contrast to previous suggestions that K. vanzoi and K.
paulensis are sister species, primarily distributed in Cerrado
of Brazilian Shield (Colli 2005), our results indicate that K.
paulensis is the sister species of Kentropyx sp. and is more
PHYLOGENY, BIOGEOGRAPHY AND CLUTCH SIZE OF KENTROPYX 273
© 2008 The Authors
Journal compilation © 2008 Blackwell Publishing Ltd
closely related to K. viridistriga, which inhabits the Chaco-
Paraná depressions, than to K. vanzoi. The early divergence
between K. vanzoi and the other species of the paulensis
group might be attributed to isolation in the Parecis
Plateau, an extensive sedimentary basin (Hasui & Almeida
1985; Bahia et al. 2006) which experienced a regional uplift
during the Miocene (Costa et al. 1996; Westaway 2006).
Further, our DIVA results indicate that the common ancestor
of K. viridistriga, K. paulensis, and Kentropyx sp. was widely
distributed in the Brazilian Shield and the Chaco-Paraná
Basin, and that a later vicariance event, probably the final
epeirogenic uplift of the Brazilian Shield during Middle–
Late Tertiary (Colli 2005), promoted the divergence between
K. viridistriga and the sister group, in the Pantanal and
Guaporé depressions. More recently, a parapatric speciation
event associated with sandy soils of the Tocantins depression
might have promoted the divergence between K. paulensis
and Kentropyx sp.
Reproduction life history evolution
Considering the direct comparisons between species, we
found that clutch size and eggs volume can significantly
differ between species of the same group (for instance for
clutch size: K. pelviceps vs. other calcarata group species), as
well as species of different groups (as Kentropyx striata vs.
K. calcarata; K. viridistriga vs. all other species). Within the
paulensis group the significantly lower clutch size of Kentropyx
paulensis and K. vanzoi, relative to K. viridistriga, suggests a
derived condition. This implies that low clutch size should
have evolved twice within the paulensis group or this
characteristic was secondarily lost in K. viridistriga, which
has the greatest clutch size among all species of Kentropyx
(Table 5).
Our results did not corroborate the hypothesis of Fitch
(1982) that postulates larger clutch sizes and smaller eggs
in open vegetation species and smaller clutch sizes with
larger eggs in forest species, irrespective of phylogenetic
structure. Thus, although forest and open vegetation species
of Kentropyx form monophyletic groups, easily distinguished
by meristic characters, such as femoral pores (Table 1), they
show conservatism in life history traits. A possible expla-
nation is that variation in reproductive parameters we
studied is not affected by major habitat type where species
occur. Consequently, species of Kentropyx did not diverge
in a significant way with respect to their ancestral life
history characters. Therefore, nonadaptive phylogenetic
constraints and inertia seem to determine clutch size and
egg volume in Kentropyx, instead of limitations on resource
availability associated with different habitat types.
Phylogenetic constraints might be recognized when a
given trait was in the environment where it has originally
evolved, but is under limits on the production of new
phenotypic variants (Harvey & Pagel 1991; Blomberg &
Garland Jr 2002). Phylogenetic constraints (instead of envi-
ronmental and climatic variables) that might limit variation
in reproductive parameters of Kentropyx include: female
body size, availability of nest sites, foraging mode, ther-
moregulation requirements, pelvic constraints (characterized
by the inability of large eggs to pass through a small pelvic
aperture), life habits (some species have semi-arboreal and
semi-aquatic habits), and locomotion performance, among
others (Aubret et al. 2005; Vitt & Congdon 1978; Vitt 1981;
Vitt & Price 1982; Shine & Schwarzkopf 1992; Oufiero et al.
2007; Pizzato et al. 2007). On the other hand, phylogenetic
inertia is often invoked as an alternative hypothesis to
adaptation by means of natural selection, to explain lack of
interspecific variation in phenotypic traits (Blomberg &
Garland Jr 2002). Hence, even after the ending of selective
forces that have produced/maintained them, some traits
might persist within a lineage (Blomberg & Garland 2002).
Accordingly, even accounting for phylogenetic influences,
the major clades of Kentropyx present negligible variation
in their reproductive strategies. It is essential to emphasize
the importance of including species historical relationships
in comparative analyses of life history traits. The current
features of species and populations may reflect only past
adaptations of their ancestors, phylogenetic inertia, and
constraints, instead of current adaptations to environmental
variation. Thus, ignoring the phylogenetic context may
imply ignoring the determinant aspect, as shown for
Kentropyx.
Conclusions
In summary, our results show that living species of Kentropyx
form three monophyletic groups, which correspond to the
phenetic grouping proposed earlier: calcarata, paulensis and
striata. However, relationships among the groups differ
from previous suggestions, with K. striata being the most
basal species. The origin of the genus date back to the
Tertiary (Eocene/Oligocene) and the ‘Pleistocene Refuge
Hypothesis’ cannot account for the diversification of
Kentropyx, and can only be associated with more recent
divergence among populations. Ancestors of the genus
were not restricted to forests as previously suggested and
could be either present or absent from the Amazon Basin.
We argue that a savanna ancestor is more likely and that
the historical events which promoted the diversification of
the genus include: (i) isolation of Brazilian/Guianan Shields
attributed to Miocene marine introgressions, corresponding
to the basal divergent between K. striata (a Guiana Shield
species) and other Kentropyx species, specially the monophyletic
paulensis group in the Brazilian Shield; (ii) distribution of
calcarata species group in Amazon Basin possibly due to
dispersion after the marine retraction; (iii) distribution of K.
calcarata in Atlantic forest due to more recent (Quaternary)
forest corridors acting as dispersion routes linking this
274 F. P. W ER NE CK E T A L .
© 2008 The Authors
Journal compilation © 2008 Blackwell Publishing Ltd
forests with the Amazon; (iv) differentiation of K. vanzoi
from other species of the paulensis group occurring during
the Miocene, coinciding with the isolation of the Parecis
Plateau; (v) final epeirogenic uplift of the Brazilian Shield
during the Late Tertiary, driving the differentiation of K.
viridistriga in the Pantanal and Guaporé depressions and
(vi) divergence between K. paulensis and Kentropyx sp. due
to parapatric speciation in the Tocantins depression. SPSM
and CPO showed that variation in reproductive parameters
was not determined by the major habitat type where species
occur, but may reflect past adaptations and phylogenetic
inertia, essential aspects of life history evolution for Kentropyx.
Acknowledgements
We thank to L.J. Vitt for making available his data on the reproduction
of some species of Kentropyx. We also thank G.H.C. Vieira for
comments on a previous version of the manuscript; R. Teixeira
and D.O. Mesquita for sharing their experience on meristic data
collecting and analyses; C. Nogueira for providing material for the
study and helpful comments on the work; A. A. Garda for help
with the biogeographic reconstruction figures. We also thank Eric
Taylor, Tiffany Doan and an anonymous reviewer for helpful
comments on the manuscript. We also acknowledge the curators
and collection managers of the following museums for the support
and specimen loans: Coleção Herpetológica da Universidade de
Brasília; Field Museum of Natural History; Instituto Nacional de
Pesquisas da Amazônia; Natural History Museum, University of
Kansas; Museum of Vertebrate Zoology; Museu de Zoologia da
Universidade de São Paulo; and Sam Noble Oklahoma Museum
of Natural History. This work was supported by Conselho
Nacional de Desenvolvimento Científico e Tecnológico-CNPq,
through student fellowships to F.P.W and L.G.G. and research
fellowships to G.R.C. and R.G.C. and by Fundação de
Empreendimentos Científicos e Tecnológicos-Finatec.
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Fernanda P. Werneck is a Brazilian PhD student at Brigham Young
University currently working on the phylogeography, niche
modelling, and conservation genetics of lizards from Seasonally
Dry Tropical Forests of South America. Her main research
interests are biodiversity, phylogeography and biogeography
of Neotropical herpetofauna. Lilian G. Giugliano is a PhD student
at Universidade de Brasília focusing cnemidophorines phylogenetic
relationships and evolution based on molecular and morphological
data. Dr Rosane Garcia Collevatti is a geneticist who is interested
in understanding population genetics and phylogeny of tropical
species. Dr Guarino R. Colli is a professor in the Department of
Zoology at the University of Brasília, with major research interests
on the ecology, biogeography, and systematics of the Cerrado
herpetofauna.
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Appendix I
Specimens examined
The specimens are referred by their individual catalogue
numbers, and initials for their respective collections are as
follows: CHUNB (Coleção Herpetológica da Universidade
de Brasília); FMNH (Field Museum of Natural History),
INPA (Instituto Nacional de Pesquisas da Amazônia), KU
(Natural History Museum, University of Kansas); MVZ
(Museum of Vertebrate Zoology); MZUSP (Museu de
Zoologia da Universidade de São Paulo).
Kentropyx altamazonica (235): CHUNB: 7505, 7507, 7508,
9816, 9821–9823, 9829, 9836, 11410–11431, 12775, 12776,
12778, 13327–13331, 13620, 18163–18210, 18212–18217, 22258,
22287, 22327. FMNH: 168016–168021, 168023, 168025,
168064–168066, 168069, 168071, 168075, 168131, 168175,
168177, 168225, 168230, 168232, 168235–168238, 168244,
168247, 168248, 168259, 168275, 168286, 168287, 168290,
168331, 168333–168336, 168338, 168343, 168345–168347,
168356, 168358, 168385–168388, 168390, 168393, 168395,
168397–168399, 168401, 168402, 168414, 168421, 168447,
168451, 168453, 168455, 168458, 208464, 218566, 229382,
229384. INPA: 491, 1466–1470, 1476–1479, 1490, 1494–1497,
1506–1509, 9480, 9481, 9483, 9492, 9493, 9496, 9498, 9499,
9676. KU: 205009, 205015, 209211–209214. MVZ: 163086–
163088, 163090–163101, 163103–163113, 174856–174863.
MZUSP: 52414, 60800, 70280.
Kentropyx borckiana (4): MZUSP: 51627–51630.
Kentropyx calcarata (231): CHUNB: 1653, 1654, 1656, 5215,
5225–5236, 7360–7362, 7500–7504, 7506, 7509, 9819, 9838,
11295, 11296, 12360, 12504, 12505, 13623, 13624, 13876–13878,
14095, 14096, 15131, 15137, 16145, 16959, 16960, 22239–22250,
22252–22257, 22259, 22260, 22281–22317, 22319–22326,
23822, 24653, 28972, 28994, 29046–29048, 29275. FMNH:
128956, 128958, 128961, 128965–128970, 134728. INPA: 62,
65, 68, 71, 74, 77, 78, 82, 131, 179, 194, 195, 225, 226, 814, 858,
859, 912, 919–923, 1083, 1128, 1274, 1275, 1309, 1310, 1480,
9023, 9591–9593, 9742, 10513, 11500, 11534, 11541, 11551.
KU: 69806–69808, 97864, 124630, 127241–127244, 167544–
167548. MZUSP: 885, 56785, 60795–60799, 60801, 67728,
68980–68982, 72655, 72658, 72840–72843, 72937–72949,
73280–73298.
Kentropyx paulensis (96): CHUNB: 1657, 5216, 8216, 9431,
9534, 11562–11566, 11568, 13628, 21755, 21756, 21758, 24529,
24541, 24549, 25672–25689, 26030–26033, 26512, 28010–28026,
30887. MZUSP: 10, 402, 629, 970, 986, 999, 1027, 2550, 2622,
4789–4792, 4794, 4795–4797, 4800–4804, 4850, 9944, 21464,
28427, 30716, 78162, 78163, 79655, 83204–83207, 87666,
93411.
Kentropyx pelviceps (156): INPA: 2183, 2184, 9413, 9482,
9484–9490, 9494, 9497, 9594, 9674, 9675, 9677, 9678, 10388,
10440, 11542. KU: 98948, 98949, 105376, 105377, 105379,
109713–109746, 122181–122188, 126793–126800, 144379,
147186, 148194–148204, 175341, 205007, 205008, 205010,
205012, 205013. MVZ: 163114–163138, 173758, 174869–174876,
174878, 174879, 174881, 174883, 174886, 174887, 174889,
174890, 175782, 199526. MZUSP: 12995, 32343, 32346,
32347, 32484, 41524, 41525, 41777, 42114, 42115, 42394–42396,
42399, 72652, 72653, 72656.
Kentropyx striata (219): CHUNB: 1197–1199, 1280–1292,
1300–1317, 1607–1652, 5217–5222, 5237–5243, 14093, 14094,
30825–30833. INPA: 1283, 1284, 10448–10464. MVZ: 84048–
84050. MZUSP: 2158, 2977, 3000, 7145, 7214, 7215, 7217–7243,
7246–7248, 7730, 7735, 13525, 15074, 15368–15372, 16593,
16594, 18586, 18587, 23610, 35403, 66702–66704, 66849–66858,
66860–66878, 66985, 66997, 69085–69091, 72659.
Kentropyx vanzoi (160): CHUNB: 9824, 11591–11650, 12274–
12280, 14057, 25289, 25290. MZUSP: 783, 801, 806–811, 834–838,
881, 898, 921–923, 941, 942, 64556–64570, 64572–64578,
64581–64605, 74988, 74989, 81614–81828, 88197, 88408–
88410, 93410.
Kentropyx viridistriga (21): CHUNB: 29198, 29279. MVZ:
127394–127407. MZUSP: 45906, 45927, 57855, 57856, 74987.
Kentropx sp. (21): CHUNB 9996 10008 10009 10042 10043
10053 10070 10109 10160 10221 10225 10232–10235 10299
10407 10408 10448 10462 10497.
Ameiva ameiva (42): CHUNB: 00868–00877, 00920–00930,
00941–00950, 01553–01559, 01603–01606.
Cnemidophorus gramivagus (64): CHUNB: 3501–3508, 3511,
3513–3515, 3517, 3519, 3520–3522, 3525–3527, 3529–3533,
3535–3545, 3547–3553, 3555–3564, 3509, 3510, 3512, 3516,
3518, 3523, 3524, 3528, 3534, 3554, 7944.
Appendix II
Morphologial data description
From each specimen, we recorded the following quantitative
meristic characters: supralabials (number of enlarged
scales along the upper jaw, total on both sides), infralabials
(number of enlarged scales along the lower jaw, total on
both sides), gular folds (number of folds in the gular
region), collar scales (number of enlarged scales present in
the gular fold), supraoculars (number of supraocular scales
on left side), parietals (number of parietal scales, including
the interparietal scale), postparietals (number of postparietals
scales contacting the interparietal scale, granular scales
278 F. P. W ER NE CK E T A L .
© 2008 The Authors
Journal compilation © 2008 Blackwell Publishing Ltd
were included when present), dorsals (counted along the
midline, from occiput to first transverse row of scales
around tail), scales around mid-body (counted midway
between fore- and hindlimbs, excluding ventrals), transverse
rows of ventrals (counted along the midline, from gular
fold to anterior margin of hindlimbs), ventrals in one trans-
verse row (counted midway between fore- and hindlimbs),
femoral pores (total number on both sides), prefemorals
(number of enlarged scales on anterior aspect of thigh,
counted midway between the hip and the knee, on a row
from femoral pores to granules on dorsal aspect of thigh),
prefemoral rows (counted from hip to knee), infratibial
rows (number of enlarged scales on longitudinal row from
knee to base of first metatarsal), preanals (number of enlarged
scales on preanal plate, from level of medialmost femoral
pores to vent), fourth finger lamellae (counted under the
finger), fourth toe lamellae (counted under the toe), scales
around tail (counted on 15th transverse row).
We recorded the following qualitative characters, with
no intraspecific variation (polymorphism): granular scales
between chinshields and infralabials (absent or present),
contact between supraciliaries and supraoculars (absent or
present), precloacal spur in males (absent or present), keeled
ventrals (absent or present), and dorsal scales of tail (smooth
or keeled). Finally, we also scored the following qualitative
characters, with intraspecific variation (polymorphism):
shape of frontonasal (hexagonal or pentagonal); degree
of contact between first pair of chinshields (no contact;
contact smaller than half of their lengths or contact greater
than half of their lengths); degree of contact between
supraoculars and medial head scales (supraoculars
contacting prefrontal, frontal, frontoparietals and parietals;
supraoculars contacting prefrontal, frontal and frontopari-
etals; supraoculars contacting prefrontal and frontoparietal;
no contact between supraoculars and medial head scales);
shape of posterior margin of interparietal (flat, angular or
rounded); condition of dorsals (granular dorsal and lateral
scales, with a clear distinction between dorsals and keeled
plate-like supracaudals; granular dorsal and lateral scales,
gradually enlarging to the tail, where dorsal and supracau-
dals are almost indistinct; rows of enlarged plate-like
dorsal and granular lateral scales); hindlimb spots (absent
or present), lateral spots (absent or present) and pattern of
stripes and fields. Fields are delimitated by stripes, and
we considered the following states: absent (when stripes
that delimit field are absent), dark, spotted, or light. The
fields we scored were: vertebral fields (middorsal between
paravertebral and vertebral stripes); dorsolateral fields
(between paravertebral and dorsolateral stripes); upper
lateral fields (between dorsolateral and upper lateral stripes);
and lower lateral fields (between lateral stripes and ventral
scales).

Supplementary resources (16)

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