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The Old World Roccella species outside Europe and Macaronesia: Taxonomy, evolution and phylogeny

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With this paper the genus Roccella is complete and fully revised. The genus contains 24 species of which eight species from the Old World in Asia and Africa are here treated in detail, Roccella applanata, R. babingtonii, R. balfourii, R. boryi, R. minuta (newly described here), R. montagnei, R. phycopsioides (newly described here) and R. sinensis. Roccella tinctoria with a predominantly Macaronesian distribution has some outpost localities in south western Africa is also included in this treatise. A full species phylogeny is presented based on data from four molecular markers, RPB2, nuLSU, ITS 1 and 2 and an anonymous locus. The African–Asian species together with three Macaronesian species (R. allorgei, R. fuciformis, R. maderensis) form a poorly supported monophyletic clade. The sister group to that clade is the significantly supported group containing the American and European–Macaronesian species. Roccella montagnei is the most widespread of all Roccella species ranging from Australia, around the Indian Ocean and further on along the west coast of Africa up north to the Cape Verde Islands. It is a genetically variable species, but morphologically, anatomically and chemically distinct and it is here maintained as one species. The distribution of roccellic acid among the samples within the monophyletic species group Roccella applanata, R. babingtonii, R. boryi, R. montagnei was surprising: sorediate specimens contain roccellic acid whereas fertile specimens, except for four samples, lack roccellic acid.
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Systematics and Biodiversity (2010), 8(2):223246
Research Article
The Old World Roccella species outside Europe and Macaronesia:
taxonomy, evolution and phylogeny
ANDERS TEHLER1,MARTINIRESTEDT
2, MATS WEDIN1&DAMIENERTZ
3
1Naturhistoriska riksmuseet, Enheten f¨
or kryptogambotanik, Box 50007 S-104 05 Stockholm, Sweden
2Naturhistoriska riksmuseet, Molekyl¨
arsystematiska laboratoriet, Box 50007 S-104 05 Stockholm, Sweden
3Jardin botanique national de Belgique, D´
epartement Bryophytes et Thallophytes, Domaine de Bouchout, B-1860 Meise, Belgium
(Received 13 November 2009; revised 19 January 2010; accepted 19 February 2010)
With this paper the genus Roccella is complete and fully revised. The genus contains 24 species of which eight species from
the Old World in Asia and Africa are here treated in detail, Roccella applanata,R. babingtonii,R. balfourii,R. boryi,
R. minuta (newly described here), R. montagnei,R. phycopsioides (newly described here) and R. sinensis. Roccella tinctoria
with a predominantly Macaronesian distribution has some outpost localities in south western Africa is also included in this
treatise. A full species phylogeny is presented based on data from four molecular markers, RPB2, nuLSU, ITS 1 and 2 and
an anonymous locus. The African–Asian species together with three Macaronesian species (R. allorgei,R. fuciformis,R.
maderensis) form a poorly supported monophyletic clade. The sister group to that clade is the significantly supported group
containing the American and European–Macaronesian species. Roccella montagnei is the most widespread of all Roccella
species ranging from Australia, around the Indian Ocean and further on along the west coast of Africa up north to the Cape
Verde Islands. It is a genetically variable species, but morphologically, anatomically and chemically distinct and it is here
maintained as one species. The distribution of roccellic acid among the samples within the monophyletic species group
Roccella applanata,R. babingtonii,R. boryi,R. montagnei was surprising: sorediate specimens contain roccellic acid
whereas fertile specimens, except for four samples, lack roccellic acid.
Key words: Arthoniales, lichenized fungi, phylogenetic species, Roccellaceae, Roccella minuta,Roccella phycopsioides,
Roccella phylogeny, roccellic acid, species pairs
Introduction
The genus Roccella DC. contains 24 species; seven species
in Europe and Macaronesia, nine species in the Americas
and eight species in Africa and Asia. Here, we will treat
the taxonomy and nomenclature of the remaining Roccella
species from Asia and Africa not previously treated by
Teh l e r et al. (Tehler et al.,2004,2009a,2009b;Tehler&
Irestedt, 2007), by combining data from molecular phy-
logeny with morphological and chemical evidence. We will
also touch upon the biogeography of this exciting group in
aphylogeneticcontext.
Roccella is a subtropical genus of lichen fungi with a
preference for areas with Mediterranean climates extend-
ing into adjacent temperate and tropical regions, and it
is predominantly distributed over the northern hemisphere
(Tehler et al.,2004;Tehler&Irestedt,2007).Allspecies
are restricted to coastal habitats and may be very common
Correspondence to: Anders Tehler. E-mail: anders.tehler@nrm.se
locally. Roccella uses Trentepo hlia as photobiont and the
lichens are fruticose with a white-greyish to greyish-brown
usually pendent thallus of flattened or terete branches, nor-
mally between 5–15 cm long; the cortex is composed of
anticlinally arranged hyphae and the medulla is normally
white to pale brownish, several species have a character-
istically yellow medulla in the holdfast, e.g. R. phycopsis
and R. gracilis. The fruiting bodies are apothecioid, circu-
lar in outline, immersed or sessile, up to 2.5 mm in diam.,
with a pruinose disc. The thalline margin is more or less
developed; all species have a characteristically carbona-
ceous hypothecium, distinct from the neighbouring white
medulla. The asci are thick-walled, fissitunicate and con-
tain eight fusiform, 3-septate, hyaline spores, within the
size range of 15–35 ×4–8 µm. The conidia are filiform
and curved; most species produce soredia for vegetative
dispersal. Secondary metabolites are typically orcinol and
β-orcinol depsides, and aliphatic acids.
In Europe and Macaronesia Roccella is found through-
out the Mediterranean Ocean extending into the Black Sea
ISSN 1477-2000 print / 1478-0933 online
C
"2010 The Natural History Museum
DOI: 10.1080/14772001003789554
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224 A. Tehler et al.
(R. phycopsis), but the highest species diversity is found
in the islands of the Macaronesian Archipelago (Azores,
Canary Islands, Madeira and Cape Verde). The main Amer-
ican distribution is along the Pacific coast of Upper and
Lower California, Peru, the Galapagos Islands and various
localities around the Caribbean Sea. On the North Amer-
ican Pacific coast it extends to just north of Los Angeles
in California (c.34
north). On the Pacific coast of South
America it extends just south of the equator (south of Lima
in Peru, c.14
south). There are no Roccella species present
on the Atlantic coasts of North and South America or on
the Pacific coast south of the Atacama Desert. The species
previously known as Roccella portentosa from Chile was
shown unrelated to Roccella and recombined to Roccellina
portentosa (Tehler & Irestedt, 2007).
Materials and methods
Terminal taxa and taxon sampling
The study is based primarily on collections made by Anders
Teh l e r fr o m S ou t h A fr i c a (1 9 9 6) , M a ur i t iu s ( 2 00 3 ) , Ho n g
Kong (2004), India (2005), Kenya (2007), Socotra (2008),
Angola (2009); on collections made by Damien Ertz from
Madagascar (2008); on collections made by Andr´
eAptroot
from St Helena (2006); and on specimens from the herbaria:
B, BM, BR, Bradford, E, ESS, G, GLAM, H, HBG, KR, L,
LINN, M, OXF, PC, S, TUR, UPS.
Species sampled for DNA-sequencing were: Roccella
applanata,R. babingtonii,R. balfourii,R. boryi,R. min-
uta (newly described here), R. montagnei,R. phycopsioides
(newly described here), R. sinensis and R. tinctoria.We
tried to achieve a sample series with large morphological
variation and with a large and representative geographi-
cal distribution. A total of 163 samples including outgroup
were used for the molecular investigations representing all
hereby recognized Roccella species worldwide; 123 of the
Old World species’ DNA voucher collections were also used
for the TLC investigations. Designated voucher specimens
are deposited in (S) and (BR).
Molecular techniques and alignment
Four lo ci were sequenced and used in the phyl ogenetic
analyses, the nuclear ribosomal internal transcribed spac-
ers ITS 1 and ITS 2 (and the intermediate 5.8s region),
the nuclear large subunit ribosomal RNA gene (LSU), the
second largest RNA polymerase subunit (RPB2) and an
anonymous locus. The anonymous locus was amplified us-
ing the primers Cal-int2F (TTA CCT CTT TTC ACC TCC
CAC TTT GCA) or Cal-int3F (ACT TTG CAC GAG AGG
CCA AGC ATT) and Cal-int1R (AGT TGT CGC AGC
GGA ACA GTT GGA), Tehler et al. (2009a,2009b). For
further information about thermo cycling conditions, how
this locus was obtained and its potential affinity see Tehler
et al. (2009a). Extractions, amplifications and sequencing
procedures follow Tehler & Irestedt (2007), Tehler et al.
(2009a,2009b). The sequence fragments were assembled
to complete sequences with SeqMan II(tm) (DNASTAR
Inc.). Ambiguous nucleotide positions were coded with
the appropriate IUPAC codes. GenBank accession num-
bers are given in Table 1. Alignments were carried out
using the computer program ClustalX 2.0.9 (Larkin et al.,
2007) under Multiple Alignment Mode with all parame-
ters set to default. Before the final phylogenetic analyses
some minor manual adjustments were made in the ITS and
anonymous locus alignments at positions where ClustalX
obviously had failed to create the most parsimonious so-
lution. The aligned data sets are given in Appendix 1 (see
supplementary material which is available on the Supple-
mentary content tab of the article’s Informaworld page at
http://dx.doi.org/10.1080/14772001003789554).
Choice of outgroup
The outgroup taxa were chosen on the basis of earlier phylo-
genetic studies of the genus Roccella and the order Artho-
niales. They include at least two sample sequences from
all other recognized Roccella species (Tehler et al.,2004,
2009a,2009b; Tehler & Irestedt, 2007). The rooting taxon
was taken from the crustose genus Dirina which is the sister
group to Roccella.
Phylogenetic analysis
For the p hy logenetic analyses we u sed t he prog rams T.N.T.
Tree Analysis Using New Technology (Goloboff et al.,
2008) and; MrBayes (Ronquist & Huelsenbeck, 2003). In
all analyses gaps were treated as missing data.
The parsimony analyses used the New Technology search
with sectorial search, ratcheting, drifting, tree fusing and
driven search options in effect, all using default settings.
Resampling tree searches were done with parsimony jack-
knifing (Farris et al.,1996)undertheNewTechsearchas
implemented in T.N.T. (Goloboff et al., 2008); 1000 repli-
cates submitted to TBR branch swapping were conducted.
In parsimony jackknifing the data are internally resam-
pled with a jackknifing technique to find well-supported
groups. Resampling works by calculating a tree for each of
alargenumberofsubsamples(pseudoreplicates)ofchar-
acters from the data, then finding a summary tree, which
comprises the groups occurring in the majority of the trees
for subsamples. The tree for each pseudoreplicate is found
by parsimony analysis, and each pseudoreplicate is formed
by randomly selecting characters from the data without re-
placement, each character having a fixed chance 1/e (about
36%) of being excluded. With this resampling technique
the actual number of characters used may vary from repli-
cate to replicate. Groups found in less than 50% (search 1)
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The Old World Roccella species 225
Table 1. Specimens used in phylogenetic analyses. GenBank accession numbers in bold are new sequences for this study.
Herbarium Acc. no. Acc. no. Acc. no. Acc. no.
Species Locality Year Collector Coll.no. & id.no. RPB2 LSU ITS anonymous
Dirina catalinariae Mexico. Baja California, Ensenada, Pta Banda 2007 Tehler 9087 S-F148386 GU137543 GU137909 GU137787 GU137663
Dirina ceratoniae Spain. Mallorca, s’Amarodor 2007 Tehler 9021 S-F66044 GU137544 GU137910 GU137788 GU137664
Dirina ceratoniae Spain. Mallorca, Sa R´
apita 2007 Tehler 9047 S-F66048 FJ639025 FJ638966 FJ639084 FJ638893
Dirina paradoxa ssp.
africana
Mauritius. Black River, Mt St. Pierre 2003 Tehler 8524 S-L55029 DQ987629 EF081386 EF081375 GU137665
Roccella albida Ecuador. Galapagos Islands, Isla R´
abida 2005 Tehler 8780 S-F63119 FJ639026 FJ638967 EU449864 EU449775
Roccella albida Ecuador. Galapagos Islands, Santa F´
e2005Tehler8653-14S-L68229DQ987651EF081408EU449860EU449771
Roccella allorgei Portugal: Azores. S˜
ao Miguel 2000 Tehler 8163 S-L12507 DQ987640 EF081397 FJ639085 FJ638895
Roccella allorgei Portugal: Azores. S˜
ao Miguel, Ponta Delgada 2000 Tehler 8151 S-L12529 DQ987639 EF081396 AJ634005 FJ638894
Roccella applanata Madagascar. Toliara (Tul´
ear), Ifaty 2008 Ertz 13058 BR-8695-62 GU137545 GU137911 GU137789 GU137666
Roccella applanata Madagascar. Toliara (Tul´
ear), Ifaty 2008 Ertz 13060 BR-8697-64 GU137546 GU137912 GU137790 GU137667
Roccella applanata Madagascar. Toliara (Tul´
ear), Ifaty 2008 Ertz 13075 BR-8713-80 GU137547 GU137913 GU137791 GU137668
Roccella applanata Madagascar. Toliara (Tul´
ear), La Table 2008 Ertz 13104 BR-8743-13 GU137548 GU137914 GU137792 GU137669
Roccella applanata Madagascar. Toliara (Tul´
ear), Ifaty 2006 Emanuelsson 101 S-F58632 GU137549 GU137915 GU137793 GU137670
Roccella babingtonii Kenya. Coast prov., Kilifi distr., Mida Creek 2007 Tehler 9231 S-F146175 GU137550 GU137916 GU137794 GU137671
Roccella babingtonii Kenya. Coast prov., Kilifi distr., Mida Creek 2007 Tehler 9233 S-F146176 GU137551 GU137917 GU137795 GU137672
Roccella babingtonii Kenya. Coast prov., Kilifi distr., Mida Creek 2007 Tehler 9258 S-F146177 GU137557 GU137923 GU137801 GU137678
Roccella babingtonii Kenya. Coast prov., Kilifi distr., Mida Creek 2007 Tehler 9234 S-F146178 GU137552 GU137918 GU137796 GU137673
Roccella babingtonii Kenya. Coast prov., Kilifi distr., Watamu 2007 Tehler 9242-18 S-F146179 GU137553 GU137919 GU137797 GU137674
Roccella babingtonii Kenya. Coast prov., Kilifi distr., Watamu 2007 Tehler 9242-19 S-F146179 GU137554 GU137920 GU137798 GU137675
Roccella babingtonii Kenya. Coast prov., Kilifi distr., Ngomeni 2007 Tehler 9251-27 S-F146180 GU137555 GU137921 GU137799 GU137676
Roccella babingtonii Kenya. Coast prov., Kilifi distr., Ngomeni 2007 Tehler 9251-28 S-F146180 GU137556 GU137922 GU137800 GU137677
Roccella bajasurensis Mexico. Baja California Sur, Playa San Pedro 2007 Tehler 9188 S-F113351 FJ639029 FJ638970 FJ639088 FJ638898
Roccella bajasurensis Mexico. Baja California Sur, La Palma 2007 Tehler 9192 S-F113352 FJ639030 FJ638971 FJ639089 FJ638899
Roccella balfourii Yemen. Socotra Island, Qalansiyah 2008 Tehler 9350 S-F146181 GU137564 GU137930 GU137808 GU137685
Roccella balfourii Yemen. Socotra Island, Homill 2008 Tehler 9302 S-F146182 GU137558 GU137924 GU137802 GU137679
Roccella balfourii Yemen. Socotra Island, Homill 2008 Tehler 9306-6 S-F146183 GU137559 GU137925 GU137803 GU137680
Roccella balfourii Yemen. Socotra Island, Homill 2008 Tehler 9306-7 S-F146183 GU137560 GU137926 GU137804 GU137681
Roccella balfourii Yemen. Socotra Island, in the south 2008 Tehler 9326 S-F146184 GU137561 GU137927 GU137805 GU137682
Roccella balfourii Yemen. Socotra Island, Sefflah 2008 Tehler 9335 S-F146185 GU137562 GU137928 GU137806 GU137683
Roccella balfourii Yemen. Socotra Island, Ras Ersel 2008 Tehler 9349 S-F146186 GU137563 GU137929 GU137807 GU137684
Roccella boryi Mauritius. Port Louis, Port Louis, Mt. Signal 2003 Tehler 8500-1 S-L55010 GU137565 GU137931 GU137809 GU137686
Roccella boryi Mauritius. Port Louis, Port Louis, Mt. Signal 2003 Tehler 8500-2 S-L55010 GU137566 GU137932 GU137810 GU137687
Roccella boryi Mauritius. Port Louis, Port Louis, Mt. Signal 2003 Tehler 8501 S-L55011 GU137567 GU137933 GU137811 GU137688
Roccella boryi Mauritius. Black River, Pointe Corail de la Prairie 2003 Tehler 8506 S-L55017 DQ987641 EF081398 EF081376 FJ638902
Roccella boryi Mauritius. Black River, Pointe Corail de la Prairie 2003 Tehler 8507 S-L55018 GU137568 GU137934 GU137812 GU137689
Roccella boryi Mauritius. Port Louis, Port Louis, Mt. Signal 2003 Tehler 8516 S-L55024 DQ987642 EF081399 FJ639092 FJ638903
Roccella boryi Mauritius. Port Louis, Port Louis, Mt. Signal 2003 Tehler 8518 S-L55026 GU137569 GU137935 GU137813 GU137690
Roccella boryi Mauritius. Black River, Mt St. Pierre 2003 Tehler 8526 S-L55032 GU137570 GU137936 GU137814 GU137691
Roccella boryi Mauritius. Black River, Mt St. Pierre 2003 Tehler 8527 S-L55033 GU137571 GU137937 GU137815 GU137692
Roccella boryi Mauritius. Plain Wilhelms, Corps de Garde 2003 Tehler 8532-28 S-L55036 GU137572 GU137938 GU137816 GU137693
Roccella boryi Mauritius. Plain Wilhelms, Corps de Garde 2003 Tehler 8532-29 S-L55036 GU137573 GU137939 GU137817 GU137694
Roccella boryi Mauritius. Plain Wilhelms, Corps de Garde 2003 Tehler 8533-30 S-L55037 GU137574 GU137940 GU137818 GU137695
(Continued on next page)
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226 A. Tehler et al.
Table 1. Specimens used in phylogenetic analyses. GenBank accession numbers in bold are new sequences for this study. (Continued)
Herbarium Acc. no. Acc. no. Acc. no. Acc. no.
Species Locality Year Collector Coll.no. & id.no. RPB2 LSU ITS anonymous
Roccella boryi Mauritius. Plain Wilhelms, Corps de Garde 2003 Tehler 8533-31 S-L55037 GU137575 GU137941 GU137819 GU137696
Roccella boryi Mauritius. Savanne, Maconde 2003 Tehler 8538 S-L55038 GU137577 GU137943 GU137821 GU137698
Roccella boryi Mauritius. Savanne, Maconde 2003 Tehler 8537 S-L55039 GU137576 GU137942 GU137820 GU137697
Roccella decipiens Mexico. Baja California, Ensenada, Pta Banda 2007 Tehler 9080 S-F114301 FJ639034 FJ638975 FJ639095 FJ638907
Roccella decipiens Mexico. Baja California Sur, Punta Eugenia 2007 Tehler 9148 S-F114308 FJ639037 FJ638978 FJ639098 FJ638910
Roccella elisabethae Canary Islands, Tenerife, Anaga, Roque Enmedio 2000 Tehler 8272 S-L14811 DQ987646 EF081403 AJ634013 FJ638911
Roccella elisabethae Canary Islands, Tenerife, Buenavista del Norte 2001 Tehler 8306-45 S-L14846 DQ987647 EF081404 AJ634014 FJ638912
Roccella fuciformis Portugal: Azores. S˜
ao Miguel, Ponta Delgada 2000 Tehler 8171 S-L12540 FJ639038 FJ638979 AJ634015 Failed sequence
Roccella fuciformis Canary Islands, Tenerife, G¨
uimar 2000 Tehler 8255 S-L14794 DQ987649 EF081406 AJ634016 FJ638913
Roccella galapagoensis Ecuador. Galapagos Islands, Santa F´
e 2005 Tehler 8651-12 S-L68226 DQ987650 EF081407 EU449894 EU449805
Roccella galapagoensis Ecuador. Galapagos Islands, Isla Santa Cruz 2005 Tehler 8667 S-L72900 DQ987653 EF081410 EU449882 EU449793
Roccella gracilis Mexico. Baja California Sur, Cabo San Lucas 2007 Tehler 9190 S-F114058 FJ639072 FJ639013 FJ639131 FJ638946
Roccella gracilis Ecuador. Galapagos Islands, Santa F´
e 2005 Tehler 8654 S-L68231 DQ987655 EF081412 EU449895 EU449806
Roccella lirellina Peru. City of Lima, Morro Solar 2006 Tehler 8880 S-F79521 FJ639074 FJ639015 EU449898 EU449809
Roccella lirellina Peru. Chiclayo , Cerro de Reque 200 6 Tehler 8904 S-F 79525 FJ63 9075 FJ639016 EU449903 EU449814
Roccella maderensis Portugal: Azores. S˜
ao Miguel, Mosteiros 2000 Tehler 8157 S-L12561 DQ987660 EF081417 AJ634021 FJ638949
Roccella maderensis Portugal: Estremadura. Cabo da Roca 2000 Tehler 8140 S-L12563 DQ987658 EF081415 AJ634018 FJ638948
Roccella margaritifera Ecuador. Galapagos Islands, Isla R´
abida 2005 Tehler 8705 S-F63259 FJ639077 FJ639018 EU449924 EU449835
Roccella margaritifera Ecuador. Galapagos Islands, Santa F´
e 2005 Tehler 8656 S-L68234 DQ987657 EF081414 EU449907 EU449818
Roccella minuta Yemen. Socotra Island, Homill 2008 Tehler 9303 S-F146187 GU137578 GU137944 GU137822 GU137699
Roccella minuta Yemen. Socotra Island, Homill 2008 Tehler 9307-8 S-F146188 GU137579 GU137945 GU137823 GU137700
Roccella minuta Yemen. Socotra Island, Homill 2008 Tehler 9307-9 S-F146188 GU137580 GU137946 GU137824 GU137701
Roccella minuta Yemen. Socotra Island, Sefflah 2008 Tehler 9334 S-F146189 GU137581 GU137947 GU137825 GU137702
Roccella minuta Yemen. Socotra Island, Sefflah 2008 Tehler 9336 S-F146190 GU137582 GU137948 GU137826 GU137703
Roccella minuta Yemen. Socotra Island, Qalansiyah 2008 Tehler 9351 S-F146191 GU137583 GU137949 GU137827 GU137704
Roccella montagnei Madagascar. Isalo Massif near ANGAP house 2008 Ertz 13020 BR-7379-07 GU137660 GU138024 GU137906 GU137784
Roccella montagnei Madagascar. Isalo Massif near ANGAP house 2008 Ertz 13036 BR-7387-15 GU137661 GU138025 GU137907 GU137785
Roccella montagnei Madagascar. Toalanaro (Fort Dauphin) 2008 Ertz 13213 BR-7485-16 GU137588 GU137954 GU137832 GU137709
Roccella montagnei Madagascar. Toalanaro (Fort Dauphin) 2008 Ertz 13214 BR-7486-17 GU137589 GU137955 GU137833 GU137710
Roccella montagnei Madagascar. Toalanaro (Fort Dauphin) 2008 Ertz 13219 BR-7489-20 GU137653 GU138017 GU137899 GU137777
Roccella montagnei Madagascar. Toliara (Tul´
ear)f Ifaty 2008 Ertz 13054 BR-8691-58 GU137584 GU137950 GU137828 GU137705
Roccella montagnei Madagascar. Toliara (Tul´
ear), Ifaty 2008 Ertz 13069 BR-8707-74 GU137662 GU138026 GU137908 GU137786
Roccella montagnei Madagascar. Toliara (Tul´
ear)f Ifaty 2008 Ertz 13074 BR-8712-79 GU137585 GU137951 GU137829 GU137706
Roccella montagnei Madagascar. Toliara (Tul´
ear), La Table 2008 Ertz 13111 BR-8750-20 GU137586 GU137952 GU137830 GU137707
Roccella montagnei Madagascar. Toliara (Tul´
ear), La Table 2008 Ertz 13112 BR-8751-21 GU137587 GU137953 GU137831 GU137708
Roccella montagnei Namibia. Omaruru distr., Laguneberg 2001 Wirth 1 KR-s.n. GU137651 GU138015 GU137897 GU137775
Roccella montagnei Namibia. Omaruru distr., Laguneberg 2001 Wirth 2 KR-s.n. GU137652 GU138016 GU137898 GU137776
Roccella montagnei Kenya. Coast prov., Kwale distr., Shimoni 2007 Tehler 9221 S-F146192 GU137595 GU137961 GU137840 GU137718
Roccella montagnei Kenya. Coast prov., Kwale distr., Shimoni 2007 Tehler 9225 S-F146193 GU137597 GU137963 GU137842 GU137720
Roccella montagnei Kenya. Coast prov., Kilifi distr., Gedi, Gedi Ruins 2007 Tehler 9239-15 S-F146194 GU137605 GU137971 GU137850 GU137728
Roccella montagnei Kenya. Coast prov., Kilifi distr., Gedi, Gedi Ruins 2007 Tehler 9239-16 S-F146194 GU137606 GU137972 GU137851 GU137729
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The Old World Roccella species 227
Roccella montagnei Kenya. Coast prov., Kilifi distr., Watamu, Temple 2007 Tehler 9241 S-F146195 GU137607 GU137973 GU137852 GU137730
Roccella montagnei Kenya. Coast prov., Kilifi distr., Kilifi 2007 Tehler 9227 S-F146197 GU137598 GU137964 GU137843 GU137721
Roccella montagnei Kenya. Coast prov., Kwale distr., Kwale 2007 Tehler 9244 S-F146198 GU137608 GU137974 GU137853 GU137731
Roccella montagnei Kenya. Coast prov., Kwale distr., Moonlight Bay 2007 Tehler 9245 S-F146199 GU137609 GU137975 GU137854 GU137732
Roccella montagnei Kenya. Coast prov., Kwale distr., Diani Beach 2007 Tehler 9246 S-F146200 GU137610 GU137976 GU137855 GU137733
Roccella montagnei Kenya. Coast prov., Kwale distr., Shimba Hills 2007 Tehler 9247 S-F146201 GU137611 GU137977 GU137856 GU137734
Roccella montagnei Kenya. Coast prov., Kilifi distr., just N Vipingo 2007 Tehler 9248 S-F146202 GU137612 GU137978 GU137857 GU137735
Roccella montagnei Kenya. Coast prov., Kilifi distr., Ngomeni 2007 Tehler 9250 S-F146203 GU137614 GU137980 GU137859 GU137737
Roccella montagnei Kenya. Coast prov., Kilifi distr., Sabaki 2007 Tehler 9252 S-F146204 GU137615 GU137981 GU137860 GU137738
Roccella montagnei Kenya. Coast prov., Taita distr., Tsavo 2007 Tehler 9254 S-F146205 GU137617 GU137983 GU137862 GU137740
Roccella montagnei Kenya. Coast prov., Kilifi distr., Kenyatta Beach 2007 Tehler 9257 S-F146206 GU137619 GU137985 GU137864 GU137742
Roccella montagnei Kenya. Coast prov., Kilifi distr., Mida Creek 2007 Tehler 9259 S-F146207 GU137620 GU137986 GU137865 GU137743
Roccella montagnei Kenya. Coast prov., Kilifi distr., Kilfi 2007 Tehler 9262 S-F146208 GU137622 GU137988 GU137867 GU137745
Roccella montagnei Kenya. Coast prov., Kilifi distr., Kilfi 2007 Tehler 9263 S-F146209 GU137623 GU137989 GU137868 GU137746
Roccella montagnei Kenya. Coast prov., Kilifi distr., Mida Creek 2007 Tehler 9232-7 S-F146210 GU137599 GU137965 GU137844 GU137722
Roccella montagnei Kenya. Coast prov., Kilifi distr., Mida Creek 2007 Tehler 9232-8 S-F146210 GU137600 GU137966 GU137845 GU137723
Roccella montagnei Kenya. Coast prov., Kilifi distr., Sabaki 2007 Tehler 9253 S-F146211 GU137616 GU137982 GU137861 GU137739
Roccella montagnei Kenya. Coast prov., Kwale distr., Shimoni 2007 Tehler 9222 S-F146212 GU137596 GU137962 GU137841 GU137719
Roccella montagnei Kenya. Coast prov., Kilifi distr., Mida Creek 2007 Tehler 9235-11 S-F146213 GU137601 GU137967 GU137846 GU137724
Roccella montagnei Kenya. Coast prov., Kilifi distr., Mida Creek 2007 Tehler 9235-14 S-F146213 GU137602 GU137968 GU137847 GU137725
Roccella montagnei Kenya. Coast prov., Kilifi distr., Mida Creek 2007 Tehler 9236 S-F146214 GU137603 GU137969 GU137848 GU137726
Roccella montagnei Kenya. Coast prov., Kilifi distr., Mida Creek 2007 Tehler 9237 S-F146215 GU137604 GU137970 GU137849 GU137727
Roccella montagnei Kenya. Coast prov., Kilifi distr., just N Vipingo 2007 Tehler 9249 S-F146216 GU137613 GU137979 GU137858 GU137736
Roccella montagnei Kenya. Coast prov., Taita distr., Tsavo 2007 Tehler 9255 S-F146217 GU137618 GU137984 GU137863 GU137741
Roccella montagnei Kenya. Coast prov., Kilifi distr., Mida Creek 2007 Tehler 9260 S-F146218 GU137621 GU137987 GU137866 GU137744
Roccella montagnei Yemen. Socotra Island, in the south 2008 Tehler 9325 S-F146219 GU137625 GU137991 GU137870 GU137748
Roccella montagnei Yemen. Socotra Island, in the south 2008 Tehler 9332 S-F146220 GU137626 GU137992 GU137871 GU137749
Roccella montagnei Yemen. Socotra Island, Sefflah 2008 Tehler 9337 S-F146221 GU137627 GU137993 GU137872 GU137750
Roccella montagnei Yemen. Socotra Island, Qalansiyah 2008 Tehler 9352a S-F146222 GU137628 GU137994 GU137873 GU137751
Roccella montagnei Angola. Luanda prov., Cacuaco 2009 Tehler 9702 S-F146224 GU137631 GU137997 GU137876 GU137754
Roccella montagnei Angola. Bengo prov., Barra do Dande 2009 Tehler 9708 S-F146225 GU137632 GU137998 GU137877 GU137755
Roccella montagnei Angola. Bengo prov., Barra do Dande 2009 Tehler 9714 S-F146227 GU137633 GU137999 GU137878 GU137756
Roccella montagnei Angola. Bengo prov., Lifune River 2009 Tehler 9718 S-F146229 GU137634 GU138000 GU137879 GU137757
Roccella montagnei Angola. Bengo prov., Tabi 2009 Tehler 9719 S-F146230 GU137635 GU138001 GU137880 GU137758
Roccella montagnei Angola. Bengo prov., Barra do Dande 2009 Tehler 9723-11 S-F146232 GU137636 GU138002 GU137881 GU137759
Roccella montagnei Angola. Bengo prov., Barra do Dande 2009 Tehler 9723-12 S-F146232 GU137637 GU138003 GU137882 GU137760
Roccella montagnei Angola. Bengo prov., Ambriz 2009 Tehler 9724 S-F146233 GU137638 GU138004 GU137883 GU137761
Roccella montagnei Angola. Luanda prov., Palmeirinhas 2009 Tehler 9728 S-F146234 GU137639 GU138005 GU137884 GU137762
Roccella montagnei Angola. Luanda prov., Palmeirinhas 2009 Tehler 9729 S-F146235 GU137640 GU138006 GU137885 GU137763
Roccella montagnei Angola. Luanda prov., Palmeirinhas 2009 Tehler 9735 S-F146237 GU137641 GU138007 GU137886 GU137764
Roccella montagnei Angola. Bengo prov., Caba Ledo 2009 Tehler 9740 S-F146239 GU137642 GU138008 GU137887 GU137765
Roccella montagnei Angola. Kwanza-Sul prov., Porto Amboim 2009 Tehler 9743 S-F146241 GU137643 GU138009 GU137888 GU137766
Roccella montagnei Angola. Kwanza-Sul prov., Sumbe 2009 Tehler 9747 S-F146243 GU137644 GU138010 GU137889 GU137767
(Continued on next page)
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228 A. Tehler et al.
Table 1. Specimens used in phylogenetic analyses. GenBank accession numbers in bold are new sequences for this study. (Continued)
Herbarium Acc. no. Acc. no. Acc. no. Acc. no.
Species Locality Year Collector Coll.no. & id.no. RPB2 LSU ITS anonymous
Roccella montagnei Angola. Luanda prov., Cacuaco 2009 Tehler 9701 S-F146244 GU137630 GU137996 GU137875 GU137753
Roccella montagnei Angola. Luanda prov., Cacuaco 2009 Tehler 9700 S-F146245 GU137629 GU137995 GU137874 GU137752
Roccella montagnei Yemen. Socotra Island, Homill 2008 Tehler 9309a S-F146247 GU137624 GU137990 GU137869 GU137747
Roccella montagnei South Atlantic Islands. St Helena 2006 Aptroot 66650-109 S-F86656 GU137645 Fail ed se que n ce GU137890 GU137768
Roccella montagnei South Atlantic Islands. St Helena 2006 Aptroot 66650-110 S-F86656 GU137646 Fail ed se que n ce GU137891 GU137769
Roccella montagnei South Atlantic Islands. St Helena 2006 Aptroot 66616 S-F86659 GU137650 GU138014 GU137895 GU137773
Roccella montagnei South Atlantic Islands. St Helena 2006 Aptroot 66253 S-F86661 GU137648 GU138012 GU137893 GU137771
Roccella montagnei South Atlantic Islands. St Helena 2006 Aptroot 66251 S-F86668 GU137647 GU138011 GU137892 GU137770
Roccella montagnei South Atlantic Islands. St Helena 2006 Aptroot 66613 S-F86669 GU137649 GU138013 GU137894 GU137772
Roccella montagnei South Africa. Cape Peninsula, Cape Point 1996 Tehler 7709 S-L2872 GU137590 GU137956 AF110355 GU137711
Roccella montagnei India. Kancheepuram, Mamallapuram 2005 Tehler 8863 S-L67940 GU137591 GU137957 GU137834 GU137712
Roccella montagnei India. Kancheepuram, Mamallapuram 2005 Tehler 8864 S-L67946 GU137592 GU137958 GU137835 GU137713
Roccella montagnei India. Kancheepuram, Koovathur 2005 Tehler 8865 S-L67951 DQ987661 EF081418 FJ639133 FJ638950
Roccella montagnei India. Kancheepuram, Vadanemeli 2005 Tehler 8868 S-L67961 GU137593 GU137959 GU137836 GU137714
Roccella montagnei India. Kancheepuram, Vadanemeli 2005 Tehler 8869 S-L67962 GU137594 GU137960 GU137837 GU137715
Roccella montagnei India. Kancheepuram, Vadanemeli 2005 Tehler 8870 S-L67977 DQ987662 EF081419 GU137838 GU137716
Roccella montagnei India. Cuddalore, Pithcavaram 2005 Tehler 8878 S-L68093 DQ987663 EF081420 FJ639134 FJ638951
Roccella montagnei India. Cuddalore, Pithcavaram 2005 Tehler 8879 S-L68094 DQ987664 EF081421 GU137839 GU137717
Roccella montagnei South Africa. Cape District, Cape of Good Hope 2003 Feuerer s.n. S-L68743 DQ987665 EF081422 GU137896 GU137774
Roccella nigerrima Ecuador. Galapagos Islands, Santa F´
e 2005 Tehler 8655 S-L68233 DQ987656 EF081413 EU449926 EU449837
Roccella nigerrima Ecuador. Galapagos Islands, Isla Santa Cruz 2005 Tehler 8666 S-L72899 DQ987652 EF081409 EU449946 EU449857
Roccella phycopsioides Yemen. Socotra Island, Homill, in the east 2008 Tehler 9309b S-F146223 GU137655 GU138019 GU137901 GU137779
Roccella phycopsioides Yemen. Socotra Island, Homill, in the east 2008 Tehler 9308 S-F146246 GU137654 GU138018 GU137900 GU137778
Roccella phycopsioides Yemen. Socotra Island, in the south 2008 Tehler 9331 S-F146248 GU137656 GU138020 GU137902 GU137780
Roccella phycopsioides Yemen. Socotra Island, Qalansiyah 2008 Tehler 9352b S-F146249 GU137657 GU138021 GU137903 GU137781
Roccella phycopsis Portugal: Azores. Terceira, Ponta das Cavalas 2000 Tehler 8221 S-L12558 DQ987666 EF081423 AJ634031 FJ638952
Roccella phycopsis Canary Islands, Tenerife, El Tanque 2000 Tehler 8295 S-L14834 DQ987667 EF081424 AJ634033 FJ638953
Roccella sinensis China, Hong Kong Isl., Shek O, Shek O 2004 Tehler 8562-1 S-L60290 DQ987668 EF081425 FJ639135 FJ638954
Roccella sinensis China, Hong Kong Isl, Shek O, Shek O 2004 Tehler 8562-2 S-L60290 DQ987669 EF081426 FJ639136 FJ638955
Roccella sinensis China, Hong Kong Isl, Big Wave Bay 2004 Tehler 8564 S-L60292 GU137658 GU138022 GU137904 GU137782
Roccella sinensis China, Hong Kong Isl, South Bay Beach 2004 Tehler 8571 S-L60299 GU137659 GU138023 GU137905 GU137783
Roccella tinctoria Canary Islands, Tenerife, G¨
uimar 2000 Tehler 8257 S-L14796 DQ987671 EF081428 AJ634040 FJ638957
Roccella tinctoria Cape Verde. Boa Vista, Sal-Rei 2004 V¨
are 1784 S-L59866 DQ987644 EF081401 FJ639093 FJ638905
Roccella tuberculata Portugal: Estremadura. Cabo da Roca 2000 Tehler 8144 S-L12564 DQ987673 EF081430 AJ634043 FJ638959
Roccella tuberculata Canary Islands, Tenerife, Buenavista del Norte 2001 Tehler 8310-50 S-L14850 FJ639078 FJ639019 AJ634047 FJ638960
Roccella verruculosa Netherland Antilles, Bonaire, Washington-Slagbaai 2006 Tehler 8941-32 S-F69355 FJ639080 FJ639021 FJ639139 FJ638962
Roccella verruculosa Netherland Antilles, Bonaire, Washington-Slagbaai 2006 Tehler 8950-41 S-F69357 FJ639083 FJ639024 FJ639142 FJ638965
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The Old World Roccella species 229
and 95% (search 2) of the trees for pseudoreplicates were
discarded, thus eliminating unjustified (poorly supported)
resolution caused by ambiguous data sets.
Bayesian inference (Huelsenbeck et al.,2001;Holder
&Lewis,2003)wasalsousedtoestimatethephylogenetic
relationships. The models for nucleotide substitutions used
in the analyses were selected for each gene individually by
applying the Akaike Information Criterion (AIC) (Akaike,
1973) and the program MrModeltest 2.2 (Nylander, 2005)
in conjunction with PAUP(Swofford, 1998). Posterior
probabilities of trees and parameters in the substitution
models were approximated with MCMC and Metropolis
coupling using the program MrBayes 3.2 (Ronquist &
Huelsenbeck, 2003). Analyses were performed for both
the individual gene partitions and the combined data
set. In the analysis of the combined data set the models
selected for the individual gene partition were used, but
the topology was constrained to be the same. All chains
were r un for 100 million generations, with trees sampled
every 1000th generations. The trees sampled during
the burn-in phase (i.e. before the chain had reached its
apparent target distribution) were discarded, and after
checking for convergence, final inference was made from
the concatenated output from the two runs (180 000 trees).
The a priori selection of nucleotide substitution models
suggested that the GTR +Gmodelhadthebestfitforthe
RPB2 data set while the GTR +I+Gmodelhadthebest
fit for ITS, LSU and the anonymous locus.
Chemistry
For rou tin e scr eening of secondary chemist r y, ‘spot-test s
on thalli and apothecia were performed with a water solu-
tion of potassium hydroxide (‘K’) and with a commercial
solution of potassium hypochlorite (‘C’). Thin-layer chro-
matography (TLC) of acetone extracts was performed on
20 ×20 cm silica gel 60 F254 layer aluminium or glass
plates using solvent systems A, B, C, EA and G. For the
visualization of the spots, 10% sulphuric acid was used as
a reagent (Orange et al.,2001).Lepraria membranacea,
Punctelia subrudecta and Trap elia involu ta were used as
control species for the identification of respectively roccel-
lic, lecanoric and gyrophoric acids
Taxonomy
Key to Old World Roccella species outside Europe
(for generic description and keys to other Roccella species the
reader is referred to Tehler et al.,2004,2009a,2009b)
1. Medulla at least in some parts
yellow
2
1. Medulla never yellow 4
2. Soralia present; apothecia absent Roccella phycopsioides
2. Apothecia present; soralia absent 3
3. Medulla yellow right below
hypothecium, usually spreading
into branches; thallus long,
pendulous, corticolous
Roccella babingtonii
3. Medulla only yellow in lowermost
holdfast; thallus short, erect,
saxicolous (endemic to Socotra
and Africa’s Horn)
Roccella minuta
4. Apothecia present; soralia absent 5
4. Soralia present; apothecia absent 10
5. Ascospores (20) 21 (22) µm long 6
5. Ascospores 24 µmorlonger 7
6. Branch tips K+reddish (endemic
to Mascarene Islands)
Roccella boryi
6. Branch tips K(southern China) Roccella sinensis
7. Ascospore width 4–4,5 (5) µm;
branches strap-like or flattened
8
7. Ascospore width 6–7 µm;
branches approximately terete
9
8. Branches rarely more than 5 mm
wide
Roccella montagnei
8. Branches more than 5 mm up to
20(–30) mm wide
Roccella applanata
9. Branches, whitish with chalky
surface (endemic to Socotra and
Africa’s Horn)
Roccella balfourii
9. Branches, brownish, non-chalky
(a Macaronesian species with
outposts in Angola, Senegal,
Sierra Leone)
Roccella tinctoria
10. Soralia C+red (a Macaronesian
species with outposts in Senegal,
Sierra Leone, Angola)
Roccella tinctoria
10. Soralia C11
11. Thallus strap-like or more or less
flattened, greenish-grey
Roccella montagnei
11. Thallus approximately terete,
whitish, greyish, beige or
brownish (endemic to Mascarene
Islands)
Roccella boryi
The species
For rep res ent ative spe cim ens examin ed re fer t o Ap-
pendix 2, List of specimens, see supplementary
material which is available on the Supplementary
content tab of the article’s Informaworld page at
http://dx.doi.org/10.1080/14772001003789554.
Roccella applanata Choisy (Fig. 1)
Ann. Cryptog. Exot.2:67(1929).Type:Madagascar.s.ann.,
s.coll.s.n.(LYJB-2323,holotype)
Thallus pendent to erect, branches broadly flattened up
to 30 mm wide, smooth to slightly foveate, 5–15 cm long,
greyish to green-greyish; cortex palisade plectenchyma;
epicortex absent; soralia absent; medulla white; in hold-
fast usually brown. Apothecia present, sessile; ascospores
24 ×4(L.max=25.6 µm; L.min =23.2 µm).
Chemistry: spot tests, thallus surface K,C+red; medulla
Downloaded By: [Tehler, Anders] At: 13:31 16 August 2010
The Old World Roccella species 231
Distribution and habitat (Fig. 2). Roccella babingtonii
is known from the African coasts of Kenya, Tanzania,
Mozambique and from the islands Comores and Seychelles
in the Indian Ocean. It grows on shrubs and trees near the
sea often on mangrove.
Remarks. Roccella babingtonii is similar to fertile R. mon-
tagnei but is readily distinguished from that latter species
by its conspicuously deep yellow medulla. The deep yel-
low colour often breaks through the surface around the
apothecia and colours the apothecial margin orange yellow.
However, the medulla is not always yellow throughout the
thallus and often the medulla is simply white. Immediately
under the hypothecium the medulla is always deep yellow
(Fig. 4).
Roccella babingtonii is a unique species in many re-
spects. It is one of only two obligately corticolous Roc-
cella species and it is also obligately sexual; vegetative
reproduction by means of soredia or other propagules is
not known. The only other Roccella species possessing
those characteristics is the closely related species Roc-
cella applanata.Furthermore,Roccella babingtonii is the
only Roccella species and one of very few Roccellaceae
species and one of very few Arthoniales species to pro-
duce an anthraquinone, skyrin, as a secondary product,
a feature which has evolved as an autapomorphy for R.
babingtonii only. The crustose species Roccellina cinerea,
endemic to Socotra, is the only other species in Roccel-
laceae which has been found to produce skyrin. Skyrin is
responsible for the K+wine-red reaction of the yellow
medulla. The name Roccella babingtonii has been fre-
quently but incorrectly used for the sorediate taxon, R.
gracilis (Tehler, 2006), even though Montagne (1852) de-
scribed it as a fertile taxon with apothecia only, soredia
were not mentioned by him. A specimen found in PC
obviously belongs to the type material although the lo-
cality specifications slightly differ from that of the pro-
tolog. It has obviously been studied by Montagne since it
bears Montagne’s handwriting. A major problem with the
collection is the specimen and label data do not match.
The locality information ‘America meridionalis’ is with-
out any doubt incorrect since the specimen belongs to an
East African Roccella species usually called R. endocro-
cea and not to any New World species of Roccella.Ex-
cept for the type specimen there are no other records
in South America of Roccella babingtonii.Wesuggest
that label data has been confused and that the origin of
the specimen is from somewhere in East Africa. We re-
gard it as highly implausible that a single specimen of
this unique skyrin-producing species would have dispersed
all the way from the African east coast to the South
American west coast. According to the rules of priority
(Art. 11) the name Roccella babingtonii should be ap-
plied to East African species up until now referred to as R.
endocrocea.
Fig. 5. Roccella balfourii. Yemen. Socotra Island, Qalansiyah,
2008, A. Tehler 9350 (S-F146181). Scale mm.
Roccella balfourii M¨
ull. Arg. (Fig. 5)
Proc. Roy. Soc. Edinburgh 11: 458 (1882). Type: Yemen,
Socotra. 1881, Balfour 1338 (G, lectotype sel. here).
Roccella hertelii Mies & Schultz, Biblioth. Lichenol.88:
446. Type: Yemen, Socotra Island, Haggier Mountains,
Aduno ridge, cliffs in the east, on granite blocks. 1200
m; expos SW. 1996, Mies 499,1 (M-90344, holotype)
Thallus erect or pendent, branches terete rarely somewhat
flattened with a chalky surface, 5–10 cm long, white grey-
ish, smooth or foveate; cortex palisade plectenchyma; epi-
cortex absent; soralia absent; medulla compact or byssoid,
white or with central parts dirty white; in holdfast usually
brown. Apothecia present, sessile; ascospores 26 ×7µm
(L.max =33 µm, L.min =22 µm). Chemistry: spot tests,
thallus surface K+reddish in branch tips, C+red; medulla
K,C;secondarymetabolitesroccellicacid,erythrin,
lecanoric acid and the unidentified substances 1 and 5.
Distribution and habitat (Fig. 2). Roccella balfourii is
endemic to Socotra and Africa’s Horn in Somalia. It grows
on cliffs and rocks near the sea.
Remarks. Small specimens of Roccella balfourii are con-
fusingly similar to R. minuta but can be readily distin-
guished by the completely brownish medulla in the hold-
fast. Roccella minuta has pale yellowish medullary hyphae
in the immediate area next to the substrate. After examin-
ing the holotype of Roccella hertelii we conclude that this
collection is most probably specimens from poorly grown,
off habitat, R. balfourii.
Roccella boryi Delise ex F´
ee (Fig. 6)
Essai Crypt. ´
Ecorc. CI. (1824). Type: Ile de Bourbon
[R´
eunion, France]. s.ann., s.coll.s.n.(PC,lectotypesel.
Teh l e r & Ir e s te d t ( 20 0 7 )) .
Roccella flaccida Bory, Dict. Class. Hist. Nat. 14: 631
(1828).—Roccella flaccida Delise ex Darb., Biblioth.
Bot. 9: 44. (1898) nom.hom. Type: Del’ile de France
Downloaded By: [Tehler, Anders] At: 13:31 16 August 2010
... Roccella is a diverse genus of fruticose lichens numbering approximately 30 species [24 according to Tehler et al. (2010); 31 according to Aptroot and Schumm (2011)]. This genus, which is mainly coastal and restricted to tropical, subtropical, Mediterranean and hyper-oceanic localities of temperate areas, has long drawn naturalists' interests as most of its species have large, fruticose thalli (sometimes in abundant populations) and are of economic interest for their tinctorial properties. ...
... The studied dataset showed that a clear segregation occurs in metabolite composition between specimens considered in this publication as R. montagnei (thallus C+ red, generally sterile, with soralia, rarely with apothecia) and R. belangeriana (thallus C+ red, fertile, without soralia). These two taxa are considered as synonyms by Tehler et al. (2010), although they could not integrate the holotype into their phylogenetic analysis of Roccella species from the Paleotropics (because they were unable to receive the holotype on loan). Prashanth et al. (2008) also asserted that R. montagnei and R. belangeriana are the same species, basing their conclusion on the analysis of ITS sequences and indicating that these two taxa are similar in both morphology and secondary chemistry. ...
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Roccella species constitute interesting models to address questions regarding lichen metabolite diversity across taxonomic, ecological and geographic gradients. Indeed, owing to their wide distribution, their taxonomic diversity and the narrow ecological niche they occupy, Roccella species are good candidates to study the drivers of lichen chemistry. This study focuses on the chemical profiling of five species: R. applanata, R. belangeriana, R. fuciformis, R. montagnei and R. phycopsis. These five species were sampled in a rather narrow longitudinal range (1°51′W to 47°17′E) covering the Eastern Atlantic and Western Indian Ocean areas along an extended latitudinal range (48°49′N to 22°23′S). High Pressure Liquid Chromatography (HPLC) analysis followed by mass spectrometry of 31 Roccella thalli revealed a number of interesting patterns through a multivariate (PCA) analysis, including the first detailed chemical profiles for two species from the Scattered Islands: R. applanata and R. belangeriana. Metabolite segregation amongst all studied Roccella species, including R. montagnei and R. belangeriana, gave some insight into the taxonomy of the latter two species, which we interpret as separate species. An additional analysis focusing on R. montagnei samples revealed chemical differences along both a latitudinal and ecological gradient (from Europa Island to São Tomé and Príncipe). Three mass spectra databases were built to dereplicate the ions, which gave an overview of the factors that could drive quantitative and qualitative metabolite composition in lichens. Additionally, several new Roccella species records are reported for the Scattered Islands, as well as São Tomé and Príncipe.
... Contrairement à la plupart des genres citées auparavant, Roccella est un genre de lichens fruticuleux et a attiré à lui de nombreuses études phytochimiques (Follmann 1987;Bohman-Lindgren 1972;T. H. Duong et al. 2017;Huneck et al. 1993;Tehler et al. 2010). La famille des Arthoniacées ne voit que très peu de changements (56 à 62 molécules). ...
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Les lichens sont des champignons symbiotiques dont la chimie est exploitée par l’Homme depuis l’antiquité. Ils n’ont cependant pas été intégrés aux études de métabolomique récentes ce qui a installé l’idée que les lichens sont pauvres en molécules. 1050 molécules leur sont classiquement attribuées, bien que ce décompte date et qu’il semble éloigné de ce qui pourrait être attendu pour un mode de vie concernant 19 387 espèces. En métabolomique, LC-MS et la déréplication à l’aide de bases de données sont régulièrement usitées pour permettre le profilage des échantillons. Ces bases de données ne sont cependant pas adaptées à l’étude des lichens, qui produisent principalement des molécules qui leur sont uniques. Dans cette optique, plusieurs bases de données spécifiques aux lichens ont été créées ici, en utilisant des données de la littérature ainsi qu’en produisant des données spectrales. Des outils ont été créées pour améliorer la déréplication par la prédiction des molécules contenues dans les extraits à partir des ions qu’elles produisent. Tout ceci a été appliqué à l’analyse de 300 échantillons de lichens pour mettre en évidence la diversité chimique de ces champignons à l’aide de techniques modernes. Ceci a permis de prédire quelque 8000 molécules avec des degrés de certitude variables. L’étude détaillée des résultats pour mettre à jour les connaissances sur les lichens reste à faire, mais ceux-ci permettent déjà d’avancer que ces organismes sont à l’origine d’une chimie sous-estimée et qui reste encore à explorer.
... Nine cases (15%) exhibit genetic uniformity relative to the studied markers or did not show structured resolution, but the available data in these cases were often limited, e.g., in Evernia esorediosa vs. E. mesomorpha (Miądlikowska et al. 2014a). Considering examples such as Fuscopannaria protensa vs. F. ahlneri, Pectenia plumbea vs. P. atlantica, and the Roccella belangeriana vs. R. montagnei species pair (Prashanth et al. 2008;Tehler et al. 2010;Carlsen et al. 2012;Otálora et al. 2013;Ekman et al. 2014;Marthinsen et al. 2019), we predict that in cases were limited molecular data initially indicate conspecifity or would support the species pair concept, additional data will in most cases reveal more complex patterns. In ten cases (16%), the putative species pairs were, at least in part, not directly related and in one case, Caloplaca aurantiaca (= Blastenia ferruginea) vs. C. chrysophthalma (≡ Solitaria chrysophthalma), even ended up in different genera (Arup et al. 2013;Vondrák et al. 2020). ...
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Lichens are symbiotic associations resulting from interactions among fungi (primary and secondary mycobionts), algae and/or cyanobacteria (primary and secondary photobionts), and specific elements of the bacterial microbiome associated with the lichen thallus. The question of what is a species, both concerning the lichen as a whole and its main fungal component, the primary mycobiont, has faced many challenges throughout history and has reached new dimensions with the advent of molecular phylogenetics and phylogenomics. In this paper, we briefly revise the definition of lichens and the scientific and vernacular naming conventions, concluding that the scientific, Latinized name usually associated with lichens invariably refers to the primary mycobiont, whereas the vernacular name encompasses the entire lichen. Although the same lichen mycobiont may produce different phenotypes when associating with different photobionts or growing in axenic culture, this discrete variation does not warrant the application of different scientific names, but must follow the principle "one fungus = one name". Instead, broadly agreed informal designations should be used for such discrete morphologies, such as chloromorph and cyanomorph for lichens formed by the same mycobiont but with either green algae or cyanobacteria. The taxonomic recognition of species in lichen-forming fungi is not different from other fungi and conceptual and nomenclatural approaches follow the same principles. We identify a number of current challenges and provide recommendations to address these. Species delimitation in lichen-forming fungi should not be tailored to particular species concepts but instead be derived from empirical evidence, applying one or several of the following principles in what we call the LPR approach: lineage (L) coherence vs. divergence (phylogenetic component), phenotype (P) coherence vs. divergence (morphological component), and/or reproductive (R) compatibility vs. isolation (biological component). Species hypotheses can be established based on either L or P, then using either P or L (plus R) to corroborate them. The reliability of species hypotheses depends not only on the nature and number of characters but also on the context: the closer the relationship and/or similarity between species, the higher the number of characters and/or specimens that should be analyzed to provide reliable delimitations. Alpha taxonomy should follow scientific evidence and an evolutionary framework but should also offer alternative practical solutions, as long as these are scientifically defendable. Taxa that are delimited phylogenetically but not readily identifiable in the field, or are genuinely cryptic, should not be rejected due to the inaccessibility of proper tools. Instead, they can be provisionally treated as undifferentiated complexes for purposes that do not require precise determinations. The application of infraspecific (gamma) taxonomy should be restricted to cases where there is a biological rationale, i.e., lineages of a species complex that show limited phylogenetic divergence but no evidence of reproductive isolation. Gamma taxonomy should not be used to denote discrete phenotypical variation or ecotypes not warranting the distinction at species level. We revise the species pair concept in lichen-forming fungi, which recognizes sexually and asexually reproducing morphs with the same underlying phenotype as different species. We conclude that in most cases this concept does not hold, but the actual situation is complex and not necessarily correlated with reproductive strategy. In cases where no molecular data are available or where single or multi-marker approaches do not provide resolution, we recommend maintaining species pairs until molecular or phylogenomic data are available. This recommendation is based on the example of the species pair Usnea aurantiacoatra vs. U. antarctica, which can only be resolved with phylogenomic approaches, such as microsatellites or RADseq. Overall, we consider that species delimitation in lichen-forming fungi has advanced dramatically over the past three decades, resulting in a solid framework, but that empirical evidence is still missing for many taxa. Therefore, while phylogenomic approaches focusing on particular examples will be increasingly employed to resolve difficult species complexes, broad screening using single barcoding markers will aid in placing as many taxa as possible into a molecular matrix. We provide a practical protocol how to assess and formally treat taxonomic novelties. While this paper focuses on lichen fungi, many of the aspects discussed herein apply generally to fungal taxonomy. The new combination Arthonia minor (Lücking) Lücking comb. et stat. nov. (Bas.: Arthonia cyanea f. minor Lücking) is proposed.
... That species differs from Alyxoria sierramadrensis in having a crustose, ecorticate, white to greyish white, cracked or areolate thallus without lobes at the margin, lirelliform, seldom roundish ascomata, a K+ dark green excipulum, I+ blue hymenium, narrower mature asci (12-15 μm), narrower ascospores (4.5-6 μm) and longer conidia (6-10 μm) (Egea et al. 1993). Other Arthoniales known to contain anthraquinones in the medulla occur in the genera Crocellina and Roccella, but these are very different species having lecanorine ascomata and belonging to the Roccellaceae (Tehler et al. 2010;Ertz et al. 2015). Species of Placolecis (Lecanorales, Catillariaceae) are also known from limestone and share a placodioid thallus with a characteristic orange medulla due to the production of anthraquinones, but the ascomata are epruinose, the asci have a prominent amyloid tholus lacking any internal differentiation (Catillaria-type) and the ascospores are simple (Yin et al. 2019). ...
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