Photosynthesis is the primary process by which energy is fed into the biological world. In its course, complex machinery performs highly effective transformation of light energy. Quite generally, the process consists of two parts: light-dependent, including the reactions necessary for the conversion of light into chemical energy (ATP) and reducing power (NADPH), and carbon-fixation, where the latter compounds are used to incorporate CO2 into simple sugars. The major part of the photosynthetic organisms utilizes water as a main electron source in a process called oxygenic Photosynthesis.
The significance and complexity of photosynthesis have been a matter of systematic research from the pure molecular mechanisms up to the physiological and even ecological aspects. The results from these studies find extensive application in fields like agronomy and environmental protection. Moreover, in the light of the global warming and the energy crisis faced by humanity, the detailed understanding of photosynthesis becomes crucial not only for the preservation of the vulnerable ecosystems, but also for the prevention of the world economy collapse. In this respect, a large field related to photosynthesis research deals with the design and development of eco-friendly light energy conversion systems mimicking the photosynthetic apparatus.
In order to precisely understand Nature’s engineering approaches the working mechanism of each part of the photosynthetic apparatus has to be studied in detail. In this regard, the subject of the current work is one of the main participants in the light-dependent phase of oxygenic photosynthesis, Photosystem I (PS I). This complex carries an immense number of cofactors: chlorophylls (Chl), carotenoids, quinones, etc, which together with the protein entity exhibit several exceptional properties. First, PS I has an ultrafast light energy trapping kinetics with a nearly 100% quantum efficiency. Secondly, both of the electron transfer branches in the reaction center are suggested to be active. Thirdly, there are some so called 'red' Chls in the antenna system of PS I, absorbing light with longer wavelengths than the reaction center. These 'red' Chls significantly modify the trapping kinetics of PS I.
The purpose of this thesis is to obtain better understanding of the above-mentioned, specific features of PS I. This will not merely cast more light on the mechanisms of energy and electron transfer in the complex, but also will contribute to the future developments of optimized artificial light-harvesting systems. In the current work, a number of PS I complexes isolated from different organisms (Thermosynechococcus elongatus, Chlamydomonas reinhardtii, Arabidopsis thaliana) and possessing distinctive features (different macroorganisation – monomers, trimers, monomers with a semibelt of peripheral antenna attached; presence of 'red' Chls) is investigated. The studies are primarily focused on the electron transfer kinetics in each of the cofactor branches in the PS I reaction center, as well as on the effect of the antenna size and the presence of 'red' Chls on the trapping kinetics of PS I. These aspects are explored with the help of several ultrafast optical spectroscopy methods: i) time-resolved fluorescence – single photon counting and synchroscan streak camera; and ii) ultrafast transient absorption. Physically meaningful information about the molecular mechanisms of the energy trapping in PS I is gained with the help of kinetic modeling.
Chapter 1 is a broad background introduction to the major issues in the light energy trapping kinetics (in particular of PS I) that still remain to be elucidated.
Chapter 2 summarizes the main experimental techniques and data analysis strategies used in the current work.
Chapter 3 represents a broad description of one of the methods used here – synchroscan streak camera – for time-resolved detection of fluorescence signals. The chapter covers the main tests that were performed during the installation of the set-up and improvements that were made during this work in order to obtain high quality data with.
Chapter 4 is a thorough investigation of the light energy trapping kinetics in higher plant core and intact PS I particles, and stroma membranes from A thaliana. The kinetic analysis of the experimental data confirms the previously proposed 'charge recombination' model for the trapping kinetics in PS I. No bottleneck in the energy flow from the bulk antenna compartments to the reaction center has been found. For both particles, a trap-limited kinetics is realized, with an apparent charge separation lifetime of about 6 ps. No 'red' Chls are found in the PS I-core complex from A. thaliana. Rather, the observed 'red'-shifted fluorescence (700-710 nm range) originates from the reaction center. In contrast, two 'red' Chls compartments, located in the peripheral light-harvesting complexes, are resolved in the intact PS I particles (decay lifetimes 33 and 95 ps, respectively). These two 'red' states have been attributed to the two 'red' states found in Lhca 3 and Lhca 4 respectively. The influence of the 'red' Chls on the slowing of the overall trapping kinetics in the intact PS I complex is estimated to be approximately four times larger than the effect of the bulk antenna enlargement.
Chapter 5 is a study of the light energy trapping kinetics in cyanobacterial PS I complexes – monomers and trimers isolated from T. elongatus, addressing the same questions as in the previous chapter. It demonstrates the adequacy of the 'charge recombination' model for describing the trapping kinetics. Based on this model the reaction center excited state can be resolved. The overall trapping kinetics in the studied complex is shown to be trap-limited even though the presence of the 'red' Chls induces a substantial slowing down (~60%). Two kinetically different 'red' Chl pools were resolved. Both of these 'red' pools originate from the same groups of pigments in either of the two aggregation states. This indicates that careful separation of the trimers into monomers does not disturb substantially the 'red' Chls and we can thus exclude their location at the monomer-monomer interface. Acceleration of the secondary electron transfer step in the studied complexes as compared to PS I from mesophilic organisms is observed.
Chapter 6 represents a sub-ps time-resolved fluorescence study performed on His-tagged intact PS I core complexes isolated from C. reinhardtii. The higher time-resolution of the experimental set-up used (<1 ps) allows indebt investigation of the intra-antenna excitation energy transfer. In order to account for these processes a new, branched model with two sequentially linked antenna compartments in each branch was used. The model successfully describes the experimental data and delivers valuable information about the spectral properties of the different PS I antenna pools. In addition, the data analysis further confirms the previously proposed ′charge recombination′ model for the description of the trapping kinetics in PS I.
Chapter 7 deals with the branching of the electron transfer reactions in the RC of PS I. The RC is composed of two cofactor branches related by a pseudo-C2 symmetry axis. The ultimate electron donor P700 (a pair of chlorophylls) and the tertiary acceptor FX (FeS cluster), are both located on this axis, while each of the two branches is made up of a pair of chlorophylls (ec2 and ec3) and a phylloquinone. Based on the observed biphasic reduction of FX it has been suggested that both branches in PS I are competent in electron transfer but the nature and rates of the initial electron transfer steps has not been characterized. This part of the current work reports an ultrafast transient absorption study of C. reinhardtii mutants in which specific amino acids forming H-bonds with either ec3A (PsaA-Y696F) or ec3B (PsaB-Y676F) are exchanged. The analysis of the experimental data shows that the rate of primary CS is lowered independently in each of the mutant PS I complexes, providing direct evidence that the primary ET is initiated separately and independently in each branch. Furthermore, the data prove that the initial CS events occur within the ec2/ec3 pairs, generating ec2+-ec3– radical pairs, followed by rapid reduction by P700. The results on this study are of great practical importance since they reveal the solution used by Nature to optimize the light trapping kinetics from large antenna systems.