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Linkage mapping of a new syndromic form of X-linked mental retardation, MRXS7, associated with obesity

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A new syndromic form of X-linked mental retardation associated to obesity, MRXS7, has been localised to Xp11.3-Xq23 in a large Pakistani family. The ten affected males show clinical manifestations of mental retardation, obesity and hypogonadism. The family was genotyped by a set of microsatellite markers spaced at approximately 10 cM intervals on the X chromosome. Linkage to five adjacent microsatellite markers, mapping in the pericentromeric area, was established and a maximum two-point lod score of 3.86 was reached at zero recombination with marker DXS1106. Reduced recombination events around the centromere prevented precise mapping of the gene.
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SHORT REPORT
Linkage mapping of a new syndromic form of
X-linked mental retardation, MRXS7, associated
with obesity
Wasim Ahmad
1
, Maurizio De Fusco
1
, Muhammad Faiyaz ul Haque
2
, Paolo Aridon
1
,
Tiziana Sarno
1
, Muhammad Sohail
3
, Sayed ul Haque
4
, Mahmud Ahmad
4
,
Andrea Ballabio
1,5
, Brunella Franco
1
and Giorgio Casari
1
1
Telethon Institute of Genetics and Medicine, Milan, Italy
2
Department of Neurology, Cell and Molecular Biology, Northwestern University Medical School, Chicago, IL, USA
3
Department of Biochemistry, University of Oxford, UK
4
Department of Biological Sciences, Quaid-i-Azam University, Islamabad, Pakistan
5
Universita’ Vita Salute, Milan, Italy
A new syndromic form of X-linked mental retardation associated to obesity, MRXS7, has been
localised to Xp11.3–Xq23 in a large Pakistani family. The ten affected males show clinical
manifestations of mental retardation, obesity and hypogonadism. The family was genotyped by
a set of microsatellite markers spaced at approximately 10 cM intervals on the X chromosome.
Linkage to five adjacent microsatellite markers, mapping in the pericentromeric area, was
established and a maximum two-point lod score of 3.86 was reached at zero recombination
with marker DXS1106. Reduced recombination events around the centromere prevented
precise mapping of the gene.
Keywords: X-linked mental retardation; obesity; linkage mapping
X-linked mental retardation (XLMR) is the most
common cause of mental retardation in males. XLMR
can be divided into syndromic and non-specific forms.
1
Both non-specific and non-syndromic forms of
X-linked mental retardation (MRX) are genetically
heterogeneous. Affected males in families segregating
MRX have no consistent clinical or somatic manifesta-
tions, apart from their mental retardation, to dis-
tinguish them from unaffected family members. Several
XLMR loci have already been mapped by linkage
analysis. Lubs and colleagues
2
listed 147 XLMR condi-
tions. Among these, 105 consisted of syndromic forms
of MRXS and 42 were described as non-specific forms
of mental retardation. However, only 18 genes respon-
sible for MRXS and five genes for MRX (FRAXE,
3
GDI1,
4
PAK3,
5
oligophrenin-1,
6
and RSK2
7
have been
cloned so far.
In the present study we describe a family with mild to
moderate forms of mental retardation, which is asso-
ciated with clinical manifestations such as obesity,
hypogonadism, micropenis, tapering fingers, hairless
body, eyesight and dental anomalies, speech disabilities,
and diminished body strength. Linkage analysis local-
ises the gene responsible for this form of mental
retardation to Xp11.3–Xq23.
Correspondence: Dr Giorgio Casari, Telethon Institute of
Genetics and Medicine, San Raffaele Biomedical Science
Park, Via Olgettina 58, 20132 Milan, Italy. Tel: 39 02 21560201;
Fax: 39 02 21560220; E-mail: casari@tigem.it
Received 21 October 1998; revised 21 May 1999; accepted 9
June 1999
European Journal of Human Genetics (1999) 7, 828–832
© 1999 Stockton Press All rights reserved 1018–4813/99 $15.00
http://www.stockton-press.co.uk/ejhg
Materials and Methods
Clinical Description
The pedigree is represented in Figure 1. Female members of
the family, including obligate carriers, show no signs of mental
deficiency. Patient III-2 is 50 years old, moderately mentally
retarded, unable to read and write, and his speech is difficult
to understand. His height is 145 cm and weight 120 kg, with
normal facial appearance. Hair is present on the face but
absent on the rest of the body, including the pubic area. He
has a micropenis and small testes. Feet are normal but with
pes planus, fingers are slightly tapered, and body strength is
highly diminished. Patient IV-4 is a 20-year-old mildly
affected male. He has never attended any type of school and
is unable to read or write, although he can communicate with
other people when required. His height is 150 cm and weight
83 kg. He has normal body and facial hair, although scanty in
the pubic area; penis and testes are small, and feet and fingers
are normal.
Patient IV-6, 18 years old, weight 87 and height 160 cm, is
moderately affected and unable to read, write, or perform
simple calculations; phallus is very small and testes are not
descended; hair is present only on the face; feet are small,
fingers tapered, and body strength is remarkably below
average. The clinical history of patients IV-9 and IV-10 are not
available. They were obese and died at the ages of 8 and 10,
respectively, due to accidents. Patient IV-11, 25 years old, is
moderately affected; his height is 165 cm and weight 85 kg.
Facial hair is normal but absent on the rest of the body,
including the pubic area. Like other affected members of the
family, he presents severe micropenis; his speech is extremely
difficult to understand; fingers are slightly tapered and body
strength is diminished.
Patient IV-12, 24 years old, is mildly affected. He can follow
commands and perform simple calculations. His height is
177 cm and weight 97 kg. Teeth are malpositioned and
malformed; testes and phallus are small; foot size is normal
but with pes planus; fingers are tapered; the speech is clear
except for occasional slurring. Patient IV-17, 16 years old, is
moderately mentally retarded with extreme speech disability;
height 152 cm and weight 82 kg; tapered fingers, pes planus,
and decreased muscular strength are present. Both maxillary
and mandibular incisors are malformed and malpositioned.
Patient IV-19, 13 years old, is severely mentally retarded and
almost completely blind in both eyes; height is 137 cm and
weight 75 kg. Besides common traits such as micropenis, non-
descended testes, and absence of body hair, he presents the
most severe dental anomalies of all patients, with mandibular
incisors malpositioned and malformed and eight axillary
incisors arranged in two rows.
The endocrinological evaluation (FSH, LH, testosterone
concentration) of affected members III-2, IV-4, and IV-6
shows normal values. The IQ test performed on all affected
members ranges between 40 and 50.
Genotype and Linkage Analysis
A set of fluorescence labelled markers (DXS1060, DXS987,
DXS1226, DXS1202, DXS1214, DXS1068, DXS993,
DXS1055, DXS991, DXS986, DXS990, DXS1106, DXS1001,
DXS1047, and DXS1227) was used for primary screening.
Figure 1 MRXS7 pedigree. Haplotypes for selected markers in Xp11.3–q23 are shown. Markers DXS8083, DXS1055, DXS991,
DXS986, DXS990, DXS1106, DXS8063, and DXS8112 are ordered pter (up) to qter (down). Arrows indicates the recombination
events
Syndromic mental retardation and obesity on Xp12–q23
W Ahmad et al
829
Further refinement of the localisation was carried out by
locally increasing the marker map density. Two-point linkage
analysis between each marker and the disease locus was
performed using the computer program LINKAGE 5.1,
8
assuming X-linked recessive inheritance. The frequency of the
disease allele was chosen arbitrarily as 0.00001. Genetic
distances of the marker loci were used as described by Dib et
al.
9
Results
Fourteen family members were enrolled in a genetic
linkage study, including seven affected and seven
unaffected subjects. Twenty-two highly polymorphic
markers (the fluorescence labelled set of markers,
DXS8083, DXS8063, DXS8112, DXS1210, DXS1059,
DXS8088, and DXS8055) spanning from Xpter to
Xqter were genotyped. The two-point lod score table
between the MRXS7 disease locus and markers is
presented in Table 1. Evidence of linkage was observed
with six markers (DXS1055, DXS991, DXS986,
DXS990, DXS1106, and DXS8063) covering a 38 cM
area with regional localisation at Xp11.3–Xq23. How-
ever, the chromosomal area spanning the two closest
recombinant markers, DXS8083 and DXS8112, is
42 cM.
The maximum lod score value 3.86 was reached with
DXS1106 at zero recombination. Multipoint linkage
analysis was performed with markers DXS8083,
DXS1055, DXS986, DXS1106, DXS8063 and
DXS8112, resulting in a broad peak, which includes all
the significant markers and reaches a maximum multi-
point lod score of 4.20 (data not shown). Haplotype
analysis presented in Figure 1 for markers DXS8083,
DXS1055, DXS991, DXS986, DXS990, DXS1106,
DXS8063, and DXS8112 showed recombination events
defining the boundaries of the critical region. Unaf-
fected male IV-3 recombines with marker DXS8083,
2.7 cM distant from DXS1055, defining the p arm
boundary; affected member IV-6 shows with marker
DXS8112 and therefore places the Xq boundary in the
2.9 cM between DXS8063 and DXS8112.
Discussion
Mental retardation associated with manifestation of
obesity, hypogonadism, microphallus, tapering fingers,
hairless body, speech disability, eyesight and dental
anomalies, and decreased body strength in a family of
10 affected males supports the hypothesis of a new
X-linked recessive mental retardation syndrome. None
Table 1 Two-point lod scores for MRXS7 family
θ
0.00 0.01 0.05 0.10 0.20 0.30 0.40
marker
DXS1060 –inf –1.63 –0.93 –0.63 –0.33 –0.16 –0.06
DXS987 –inf –4.08 –2.05 –1.23 –0.50 –0.17 –0.03
DXS1226 –inf –4.29 –1.63 –0.60 0.19 0.40 0.32
DXS1202 –inf –5.99 –2.63 –1.30 –0.21 0.18 0.22
DXS1214 –inf –2.37 –0.45 0.22 0.61 0.59 0.35
DXS1068 –inf –2.60 –0.67 0.01 0.45 0.47 0.29
DXS993 –inf –2.31 –0.39 0.27 0.65 0.61 0.36
DXS8083 –inf 1.62 2.10 2.12 1.82 1.32 0.70
DXS1055 3.67 3.61 3.37 3.06 2.39 1.66 0.85
DXS991 3.74 3.68 3.43 3.11 2.43 1.69 0.86
DXS986 3.67 3.62 3.38 3.08 2.42 1.69 0.87
DXS990 3.18 3.13 2.91 2.62 2.02 1.38 0.69
DXS1106 3.86 3.80 3.54 3.21 2.50 1.74 0.89
DXS8063 3.19 3.13 2.91 2.63 2.02 1.34 0.58
DXS8112 –inf 1.14 1.64 1.67 1.41 0.97 0.41
DXS1210 0.17 0.16 0.14 0.11 0.07 0.03 0.01
DXS1059 0.17 0.16 0.14 0.11 0.07 0.03 0.01
DXS8088 –inf 1.14 1.64 1.67 1.41 0.97 0.41
DXS8055 –inf –2.31 –0.39 0.26 0.65 0.61 0.36
DXS1001 0.22 0.21 0.19 0.15 0.09 0.03 0.00
DXS1047 –inf –7.70 –3.68 –2.10 –0.77 –0.22 –0.01
DXS1227 0.18 0.17 0.15 0.12 0.07 0.02 –0.01
Syndromic mental retardation and obesity on Xp12–q23
W Ahmad et al
830
of the observed manifestations are detected in any
normal members of the family. Lubs and co-workers
2
provided a comprehensive list of all forms of X-linked
mental retardation, altogether 147 entries, consisting of
105 syndromic and 42 non-specific forms. Some of the
clinical anomalies observed in patients with various
disorders overlap with the syndrome described in this
study. The MEHMO syndrome (mental retardation,
epilepsy, hypogonadism, microcephaly, and obesity
10
)
locus maps on Xp21–22, external to the MRXS7 critical
region. Wilson et al
11
describe 14 affected males through
three successive generations in a large family with
X-linked mental retardation, characterised by obesity,
gynecomastia, speech difficulties, emotional lability,
tapering fingers, small feet, and hypogonadism (Wilson-
Turner syndrome).
However, the major clinical manifestation described
in the affected subjects, gynecomastia, is a finding
absent in our MRXS7 patients. The candidate region
for the MRXS7 gene (Xp11.3–Xq23) overlaps with that
of the Wilson-Turner syndrome, Xp21.1–Xq22.
11,12
Although clinical manifestation of gynecomastia is
absent in our patients, the possibility that a single gene
is involved in both MRXS7 and Wilson-Turner syn-
drome cannot be excluded. Two more XLMR syn-
dromes associated with obesity, hypogonadism, and
short stature exhibit some clinical overlap with patterns
of MRXS7 patients. Vasquez et al
13
identified a family
with five affected males through four generations with
mental retardation, obesity, hypogonadism, and gyne-
comastia. The Borjeson-Forssman-Lehmann syndrome
is characterised by mental retardation, unusually coarse
face with large ears, obesity and epilepsy, and maps in
Xp27.
14
The MRXS7 critical region has been described as the
most gene-dense region after the MHC class III cluster
identified on chromosome 6.
15
Several disease genes
have been mapped to this region. They include the
androgen receptor gene,
16
the XH2 gene, responsible
for ATRX syndrome, an X-linked disorder comprising
severe psychomotor retardation, genital abnormalities,
and alpha-thalassaemia,
17
three genes responsible for
eye diseases,
18–20
Wiskott-Aldrich syndrome,
21
one form
of synovial sarcoma,
22
X-linked nephrolithiasis,
23
and
zinc finger genes (ZXDA
24
and four Kruppel type
25
).
These zinc finger genes could be considered candidates
for the syndrome described in this paper, and possibly
the Wilson syndrome, further supported by earlier
findings, showing that disruption of zinc finger genes
was involved in human development disorders such as
Greig-cephalopolysyndactyly syndrome
26
and Wilms
tumour.
27
Acknowledgements
We gratefully acknowledge the family members. We thank
Drs Mohammad Ayub and Mohammad Andaleeb for helping
with clinical diagnosis. This work was supported by the Italian
Telethon Foundation to TIGEM and WA (postdoctoral
fellowship 205/bs). MA was supported by the Pakistan
Science Foundation (PSF).
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Syndromic mental retardation and obesity on Xp12–q23
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This is the sixth edition of the catalogue of XLMR genes, ie X-linked genes whose malfunctioning causes mental retardation. The cloning era is not yet concluded, actually much remains to be done to account for the 202 XLMR conditions listed in this update. Many of these may eventually prove to be due to mutations in the same gene but the present number of 33 cloned genes falls surely short of the actual total count. It is now clear that even small families or individual patients with cytogenetic rearrangements can be instrumental in pinning down the remaining genes. DNA chip technology will hopefully allow (re)screening large numbers of patients for mutations in candidate genes or testing the expression levels of many candidate genes in informative families. Slowly, our knowledge of the structure and functioning of the proteins encoded by these genes is beginning to cast some light on the biological pathways required for the normal development of intelligence. Correlations between the molecular defects and the phenotypic manifestations are also being established. In order to facilitate the exchange of existing information and to allow its timely update, we prepared the first edition of the XLMR database (available at http://homepages.go.com/~xlmr/home.htm) and invite all colleagues, expert in the field, to contribute with their experience.
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This report constitutes the eighth update of the human obesity gene map, incorporating published results up to the end of October 2001. Evidence from the rodent and human obesity cases caused by single-gene mutations, Mendelian disorders exhibiting obesity as a clinical feature, quantitative trait loci (QTLs) uncovered in human genome-wide scans and in crossbreeding experiments in various animal models, association and linkage studies with candidate genes and other markers is reviewed. The human cases of obesity related in some way to single-gene mutations in six different genes are incorporated. Twenty-five Mendelian disorders exhibiting obesity as one of their clinical manifestations have now been mapped. The number of different QTLs reported from animal models currently reaches 165. Attempts to relate DNA sequence variation in specific genes to obesity phenotypes continue to grow, with 174 studies reporting positive associations with 58 candidate genes. Finally, 59 loci have been linked to obesity indicators in genomic scans and other linkage study designs. The obesity gene map depicted in Figure 1 reveals that putative loci affecting obesity-related phenotypes can be found on all chromosomes except chromosome Y. A total of 54 new loci have been added to the map in the past 12 months, and the number of genes, markers, and chromosomal regions that have been associated or linked with human obesity phenotypes is now above 250. Likewise, the number of negative studies, which are only partially reviewed here, is also on the rise.
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This is the ninth update of the human obesity gene map, incorporating published results through October 2002 and continuing the previous format. Evidence from single-gene mutation obesity cases, Mendelian disorders exhibiting obesity as a clinical feature, quantitative trait loci (QTLs) from human genome-wide scans and various animal crossbreeding experiments, and association and linkage studies with candidate genes and other markers is reviewed. For the first time, transgenic and knockout murine models exhibiting obesity as a phenotype are incorporated (N = 38). As of October 2002, 33 Mendelian syndromes relevant to human obesity have been mapped to a genomic region, and the causal genes or strong candidates have been identified for 23 of these syndromes. QTLs reported from animal models currently number 168; there are 68 human QTLs for obesity phenotypes from genome-wide scans. Additionally, significant linkage peaks with candidate genes have been identified in targeted studies. Seven genomic regions harbor QTLs replicated among two to five studies. Attempts to relate DNA sequence variation in specific genes to obesity phenotypes continue to grow, with 222 studies reporting positive associations with 71 candidate genes. Fifteen such candidate genes are supported by at least five positive studies. The obesity gene map shows putative loci on all chromosomes except Y. More than 300 genes, markers, and chromosomal regions have been associated or linked with human obesity phenotypes. The electronic version of the map with links to useful sites can be found at http://obesitygene.pbrc.edu.
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This is the tenth update of the human obesity gene map, incorporating published results up to the end of October 2003 and continuing the previous format. Evidence from single-gene mutation obesity cases, Mendelian disorders exhibiting obesity as a clinical feature, quantitative trait loci (QTLs) from human genome-wide scans and animal crossbreeding experiments, and association and linkage studies with candidate genes and other markers is reviewed. Transgenic and knockout murine models relevant to obesity are also incorporated (N = 55). As of October 2003, 41 Mendelian syndromes relevant to human obesity have been mapped to a genomic region, and causal genes or strong candidates have been identified for most of these syndromes. QTLs reported from animal models currently number 183. There are 208 human QTLs for obesity phenotypes from genome-wide scans and candidate regions in targeted studies. A total of 35 genomic regions harbor QTLs replicated among two to five studies. Attempts to relate DNA sequence variation in specific genes to obesity phenotypes continue to grow, with 272 studies reporting positive associations with 90 candidate genes. Fifteen such candidate genes are supported by at least five positive studies. The obesity gene map shows putative loci on all chromosomes except Y. Overall, more than 430 genes, markers, and chromosomal regions have been associated or linked with human obesity phenotypes. The electronic version of the map with links to useful sites can be found at http://obesitygene.pbrc.edu.
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Although obesity shows high heritability, we are aware of only a small number of genes that affect adipose mass in humans. Genetic syndromes with obesity represent unique opportunities to gain insight into the control of energy balance. The majority of obesity syndromes can be distinguished by the presence of mental retardation. We performed a systematic search of such syndromes and reviewed the literature with a focus on distinguishing clinical features, the characteristics of their obesity, and the underlying pathogenetic mechanisms. We predict that the study of these conditions will shed light on common forms of obesity.
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Multilocus linkage analysis of 62 family pedigrees with X chromosome-linked retinitis pigmentosa (XLRP) was undertaken to determine the presence of possible multiple disease loci and to reliably estimate their map location. Multilocus homogeneity tests furnished convincing evidence for the presence of two XLRP loci, the likelihood ratio being 6.4 x 10^9:1 in favor of two versus a single XLRP locus and gave accurate estimates for their map location. In 60-75% of the families, location of an XLRP gene was estimated at 1 centimorgan distal to OTC, and in 25-40% of the families, an XLRP locus was located halfway between DXS14 (p58-1) and DXZ1 (Xcen), with an estimated recombination fraction of 25% between the two XLRP loci. There is also good evidence for a third XLRP locus, midway between DXS28 (C7) and DXS164 (pERT87), supported by a likelihood ratio of 293:1 for three versus two XLRP loci.
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Rapid progress has been made in the analysis of the fragile X syndrome during 1991. Different groups have discovered that fragile X chromosomes are preferentially methylated. In these X chromosomes an insertion has been found in the methylated region. The FMR-1 gene, the transcription of which is shut off in patients, has been isolated. The expansion found in fragile X chromosomes is localized in the coding region of the FMR-1 gene. The fragile X syndrome results from mutations in a (CGG)n repeat found in the coding region of the FMR-1 gene. It will be crucial to determine the FMR-1 protein product in order to learn more about the function of the gene. Diagnosis of the unstable region by DNA analysis is now available as an efficient and reliable test for the diagnosis of carriers, as well as for prenatal diagnosis.
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Five male members in four generations of the same family presented with hypogonadism, micropenis, mental retardation and short stature. The adults had gynecomastia, obesity and normal size hands and feet. Four had small head, with narrow forehead in two. History of neonatal hypotonia with difficulty in feedings was obtained in two. A variety of structural abnormalities of the hand and other skeletal defects were observed in some. Chromosomal studies including banding were normal. Serum LH and FSH were normal in three adults (12.3 and 4.5 mIU/ml; 9.0 and 7.0 mIU/ml and 22.5 and 18.1 mIU/m1). Serum testosterone levels were low (90 ng/d1; 54 ng/d1 and 75 ng/d1) and responded to hCG with at least doubling of the initial value. Testicular biopsies in two adults showed patchy involvement with tubular shrinkage, folding of the basement membrane, thickening of the tunica propria and loss of germinal epithelium in some areas. Other tubules were less affected and showed spermatogenesis. Leydig cells were present. The findings suggest partial hypogonadotropic hypogonadism. Their phenotype and the abnormalities in their sexual development are most likely the result of a developmental anomaly of the CNS. The mode of inheritance, gynecomastia and absence of small hands and feet suggest that this disorder represents a new syndrome resembling but distinct from that described by Prader and Willi.
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A current list of all known forms of X-linked mental retardation (XLMR) and a slightly revised classification are presented. The number of known disorders has not increased because 6 disorders have been combined based on new molecular data or on clinical grounds and only 6 newly described XLMR disorders have been reported. Of the current 105 XLMR disorders, 34 have been mapped, and 18 disorders and 1 nonspecific XLMR (FRAXE) have been cloned. The number of families with nonspecific XLMR with a LOD score of ≥2.0 has more than doubled, with 42 (including FRAXE) now being known.A summary of the localization of presumed nonspecific mental retardation (MR) genes from well-studied X-chromosomal translocations and deletions is also included. Only 10-12 nonoverlapping loci are required to explain all localizations of nonspecific MR from both approaches.These new trends mark the beginning of a significantly improved understanding of the role of genes on the X chromosome in producing MR. Continued close collaboration between clinical and molecular investigators will be required to complete the process. © 1996 Wiley-Liss, Inc.
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We have identified 39 X-linked conditions in which mental retardation seems to be the primary characteristic, although pathogenesis is unknown. These conditions can be subdivided into syndromal and non-syndromal, depending on the existence of a recognizable pattern of minor anomalies and/or malformations, or lack thereof. Seventeen genes have been regionally mapped onto the X chromosome. However, in 14 instances the data were derived from a single family and most lod scores were less than 3.0.
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The Wiskott-Aldrich syndrome (WAS) is an X-linked recessive genetic disease in which the basic molecular defect is unknown. We previously located the WAS gene between two DNA markers, DXS7 (Xp11.3) and DXS14 (Xp11), and mapped it to the proximal short arm of the human X chromosome (Kwan et al., 1988, Genomics 3:39–43). In thisstudy, further mapping was performed on 17 WAS families with two additional RFLP markers, TIMP and DXS255. Our data suggest that DXS255 is closer to the WAS locus than any other markers that have been previously described, with a multipoint maximum lod score of Z = 8.59 at 1.2 cM distal to DXS255 and thus further refine the position of the WAS gene on the short arm of the X chromosome. Possible locations for the WAS gene are entirely confined between TIMP (Xp11.3) and DXS255 (Xp11.22). Use of these markers thus represents a major improvement in genetic prediction in WAS families.
Article
Five male members in four generations of the same family had hypogonadism, gynecomastia, mental retardation, obesity, and short stature. The X-linked mode of inheritance, the distinctive facies, the normal size of the hands and feet, and the true gynecomastia are the main characteristics. Endocrine evaluation and histologic studies of the testes suggest partial hypogonadotropic hypogonadism. This disorder represents a new syndrome distinct from others previously described.
Article
The Greig cephalopolysyndactyly syndrome (GCPS) is an autosomal dominant disorder affecting limb and craniofacial development in humans. GCPS-affected individuals are characterized by postaxial polysyndactyly of hands, preaxial polysyndactyly of feet, macroephaly, a broad base of the nose with mild hypertelorism and a prominent forehead. The genetic locus has been pinpointed to chromosome 7p13 by three balanced translocations associated with GCPS in different families. This assignment is corroborated by the detection of two sporadic GCPS cases carrying overlapping deletions in 7p13 (ref. 7), as well as by tight linkage of GCPS to the epidermal growth factor receptor gene in 7p12-13 (ref. 8). Of the genes that map to this region, those encoding T cell receptor-gamma, interferon-beta 2, epidermal growth factor receptor, and Hox1.4, a potential candidate gene for GCPS, have been excluded from the region in which the deletions overlap. Here we show that two of the three translocations interup the GLI3 gene, a zinc-finger gene of the GLI-Krüppel family already localized to 7p13 (refs 5, 6). The breakpoints are within the first third of the coding sequence. In the third translocation, chromosome 7 is broken at about 10 kilobases downstream of the 3' end of GLI3. Our results indicate that mutations disturbing normal GLI3 expression may have a causative role in GCPS.