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Arthropods: Developmental diversity within a (super) phylum

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The expression patterns of developmental genes provide new markers that address the homology of body parts and provide clues as to how body plans have evolved. Such markers support the idea that insect wings evolved from limbs but refute the idea that insect and crustacean jaws are fundamentally different in structure. They also confirm that arthropod tagmosis reflects underlying patterns of Hox gene regulation but they do not yet resolve to what extent Hox expression domains may serve to define segment homologies.
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Perspective
Arthropods: Developmental diversity within a
(super) phylum
Michael Akam*
Laboratory for Development and Evolution, University Museum of Zoology, Department of Zoology, Downing Street, Cambridge, CB2 3EJ, United Kingdom
The expression patterns of developmental genes provide new markers that address the homology of body parts and provide clues as to
how body plans have evolved. Such markers support the idea that insect wings evolved from limbs but refute the idea that insect and
crustacean jaws are fundamentally different in structure. They also confirm that arthropod tagmosis reflects underlying patterns of Hox
gene regulation but they do not yet resolve to what extent Hox expression domains may serve to define segment homologies.
The goal of much evo-devo research is
to understand how developmental
mechanisms evolve to generate new body
plans. A prerequisite is to understand how
body plans themselves may best be com-
pared. For macroevolutionary compari-
sions, this is no trivial task—a fact evident
from century-old disputes as to the ho-
mology of parts. Molecular embryology
provides new markers to address these old
questions, markers that also provide clues
to the molecular changes that underlie
evolutionary transformations. Arthropods
provide an excellent test case for this
approach because their diversity is con-
strained by the literal straight jacket of a
modular exoskeleton. I review the first
fruits of such studies below. In some cases,
these data clearly support or refute pre-
vious hypotheses, fulfulling much of their
promise. In other cases, interpretation
remains difficult. However, given the po-
tential richness of this data set, there is
good cause to be optimistic that further
studies will resolve, rather than com-
pound, ambiguities.
The Place of Arthropods in the Tree of Life.
The context for any study that seeks to
understand the evolution of development
must be a phylogeny, albeit uncertain. Ar-
thropods are no longer considered to be the
kin of annelids, but both molecular and
morphological data support the traditional
association between arthropods proper and
the segmented lobopods, typified by Peripa-
tus. This pan-arthropod grouping would
now be placed by many within a larger
assemblage of molting animals, the Ecdyso-
zoa [refs. 1 and 2; see the article by Adoutte
in this issue of PNAS (3)]. The basal radi-
ation of the arthropods is not yet resolved,
but both molecular and new morphological
data support a close relationship between
insects and crustaceans, to the exclusion of
chelicerates (4– 8). The position of the myri-
apods remains uncertain, although molecu-
lar analyses consistently place them outside
an insect
crustacean clade.
Homology of Limbs and Segmentation. Con-
served details of engrailed gene expression
support a common origin for segmenta-
tion within the arthropods. Engrailed pro-
tein marks the posterior parts of segments
and, in all arthropods tested, limb buds
arise at the boundary of engrailed ex press-
ing and non-expressing cells (9, 10). No
studies have examined segmentation gene
expression in other pan-arthropodan
phyla.
The limbs of insects and myriapods
have a single proximo-distal ax is—they
are uniramous. Crustacean limbs are fre-
quently branched, with two (biramous) or
more proximo-distal axes. These branched
structures arise by the appearance of mul-
tiple growth foci at different dorso-ventral
positions around the distal margin of the
limb bud. However, all limb branches arise
at the same interface between engrailed
expressing and non-expressing cells: i.e.,
at the same A
P position (11, 12). This
pattern provides no developmental sup-
port for a model of arthropod segment
evolution that derives biramous limbs
from the fusion of two primitive un-
iramous segments (13).
Current models propose that the
proximo
distal axis of the Drosophila
limb is specified by the overlap of decap-
entaplegic (dpp) and wingless signaling ter-
ritories, with distal territories defined by
expression of the distalless gene (14). Ho-
mologues of distalless and wingless are
both involved in patterning the multiple
branches of crustacean limbs, but the pat-
tern of their expression in the most com-
plex multiply branched limbs does not
suggest a simple reiteration of the insect
model in each limb branch (15, 16).
Molecular markers support the hypoth-
esis that the wings of insects may derive
from the dorsal branches of an ancestrally
branched arthropod limb, and not from an
extension of the notum, as has been pro-
posed more recently. Two genes charac-
teristically expressed in the developing
wing of Drosophila, nubbin and apterous,
are both expressed specifically in the dorsal
lobe of the multiply branched limb of the
branchiopod crustacean, Artemia (17).
The Mandible. In insects, myriapods, and
crustaceans, the first mouthpart segment
is modified to form a biting jaw, the man-
dible. The structure of the mandible has
been a key character supporting a phylog-
eny that groups the insects with the myri-
apods to the exclusion of the crustaceans.
From the evidence of functional morphol-
ogy, Sidnie Manton argued that the myri-
apod and insect mandibles were con-
structed from a whole limb whereas the
crustacean mandible was derived from
only the basal segment of the appendage
(a so-called gnathobasic mandible). De-
velopmental data do not agree with this
interpretation. The insect mandible,
uniquely among insect appendages, does
not express distalless at any stage of its
development, strongly suggesting that it
does not correspond to a whole limb.
However, distalless expression is also lost
from the developing mandible of myri-
apods, and of those crustaceans that lack
a mandibular palp (18, 19). By this crite-
rion, the biting structures of all arthropod
mandibles are gnathobasic in the adult.
The nature of the mandible is therefore
not useful for defining relationships be-
tween these three groups. It is, however, a
character that unites myriapods, insects,
and crustaceans (traditionally termed the
mandibulate arthropods) to the exclusion
of the chelicerates, where all of the limbs
retain distal elements, and distalless
expression.
Ancestral Patterns of Arthropod Segmenta-
tion. The ancestral arthropod has tradi-
tionally been envisaged as an animal with
a large and somewhat ill defined number
*E-mail: m.akam@zoo.cam.ac.uk.
4438–4441
PNAS
April 25, 2000
vol. 97
no. 9
of similar trunk segments. However, cur-
rent arthropod phylogenies suggest that
we should look again at animals showing
characteristics that may be interpreted as
intermediate between those of arthropods
and onychophorans. Several have been
described from the Cambrian—most re-
cently, Kerygmachela, from the Sirius Pas-
sat fauna of Greenland (20). This animal
has a lobopod-like body, but spiny and
or
segmented appendages at the anterior and
posterior (Fig. 1). Perhaps the first jointed
appendages of arthropods were the anten-
nae and cerci, with trunk appendages de-
rived by the transfer of developmental
programs that first evolved to build these
sensory structures.
These putative intermediate Cambrian
forms have relatively few trunk segments,
often 11 (20). If these lie close to the
arthropod stem lineage, then the ancestral
arthropod may itself have had a relatively
short trunk with a well defined segment
number. This implies a mechanism gener-
ating a specific number of segments, not
an indefinite budding process akin to that
of annelids. The large and variable num-
ber of segments seen in many trilobites,
some crustaceans, and some myriapods
would then be a derived character, not the
ancestral state. Indeed, among centipedes,
the orders with large and variable segment
numbers are derived, not basal (21).
The Ancestral Complement of Arthropod Hox
Genes. Comparison of the Hox gene com-
plements of different phyla, and of
different classes within the arthropods,
suggests that the ancestral Hox cluster of
the arthropods contained 10 linked
genes, corresponding to the 8 canonical
Hox genes of Drosophila and two more
genes—one orthologous to the Hox3
gene of vertebrates, which in insects gave
rise to the zen and bicoid genes, and one
additional central gene that gave rise to
the segmentation gene ftz of Drosophila
and its relatives in other insects (refs. 2
and 22; C. Cook and M.A., unpublished
work).
In chelicerate arthropods, the ftz and
zen related genes, as well as all of the
canonical Hox genes that have been ana-
lyzed, are expressed in restricted domains
along the body axis (10, 23, 24). These
expression patterns presumably reflect a
conserved ancestral role for all of the Hox
genes in the specification of axial position.
It is not yet clear when in arthropod
evolution the Hox3 and ftz-related genes
acquired the new functions in embryonic
patterning seen in higher insects, or lost
their old functions.
Hox Genes, Tagmosis, and Segment Morphol-
ogy. Arthropod bodies are subdivided into
distinct regions comprising arrays of func-
tionally integrated and, to a greater or
lesser extent, morphologically similar seg-
ments, termed tagmata (from the Greek
regiment). Available data support the hy-
pothesis that the abrupt and extensive
changes in segment morphology that char-
acterize the boundaries between tagmata
reflect discontinuities in Hox gene expres-
sion (10, 25–32).
No Hox gene is known to be expressed
in or anterior to the first appendage pair
of any arthropod: i.e., the antennae of
insects (corresponding to the first antenna
of crustacea), or the eponymous cheliceral
segment of chelicerates. Insect antennae
require the absence of Hox gene expres-
sion for normal development, and it is to
this state that appendage development
defaults when Hox genes are deleted (33).
Thus, we may surmise that the character-
istic differences between the first append-
age bearing segment of chelicerates and
mandibulates are independent of Hox
genes, and reflect other differences in the
segment patterning machinery of these
two arthropod groups.
In the prosoma of chelicerates, anterior
Hox genes are expressed in extensively
overlapping patterns (10, 30, 32), resem-
bling more the patterns seen in verte-
brates, and in the thorax and abdomen of
insects, than the well resolved segment
specific patterns observed for anterior
Hox genes in the head of insects and
crustaceans (29, 34). Comparison of Hox
gene expression in the heads of several
insect and crustacean species reveals con-
siderable variation in the precise domains
of Hox gene expression. Abzhanov and
Kaufman (29) suggest that these restricted
patterns have been derived independently
from an ancestral pattern more similar to
that seen in chelicerates, presumably as
the morphology of anterior segments has
become more diversified.
In comparisons between mandibulates
and chelicerates, Hox gene expression is in
general no guide to the form or function of
trunk appendages. For example, ‘‘walking
legs’’ express a quite different suite of Hox
genes in the two groups. This contrasts
markedly with the conser ved relationship
between the expression of some regula-
tory genes and the development of specific
organs [e.g., the pax 6 gene and eyes (35)].
Perhaps this is because what distinguishes
different appendages is not, in general, the
possession of unique cell types, but more
subtle aspects of tissue patterning and
relative growth, the regulation of which
may become linked to new transcription
factors on relatively short evolutionary
time scales. There is one possible excep-
tion to this rule: The most posterior Hox
gene, Abdominal-B, is expressed in the
genitalia in at least some insects, crusta-
ceans, and chelicerates (25, 31).
Although Hox genes cannot in general
be tied to particular morphologies, there
are striking analogies in the way that Hox
genes are used to pattern segments within
the leg bearing tagmata of insects and
spiders. In both cases, a regiment of fun-
damentally similar appendages are more
or less subtly differentiated one from one
another. In insects, all of the thoracic
segments initially express Antennapedia,
which in combination with other region-
specific transcription factors (e.g., teashirt)
appears to specify a thoracic ground state.
The legs are differentiated one from one
Fig. 1. Proposed reconstruction of the Cambrian lobopod, Kerygmachela kierkegaardi, from ref. 20. This
animal had typical onychophoran trunk appendages, but remarkably arthropod-like sensory appendages
at front and back. [Reproduced with permission from the Royal Society of Edinburgh from Transactions
of the Royal Society of Edinburgh: Earth Sciences, volume 89 (1999 for 1998), pp. 249–290.]
Akam PNAS
April 25, 2000
vol. 97
no. 9
4439
PERSPECTIVESPECIAL FEATURE
another by the locally modulated expres-
sion of other Hox genes [in this case, Sex
combs reduced (Scr) and Ultrabithorax
(Ubx) (36, 37)]. In the spiders, all of the
leg buds express Deformed, and other an-
terior Hox genes, but in later develop-
ment, the appendages are distinguished by
distinct patterns of Scr expression, which is
expressed only in the more posterior legs
(30, 32). Perhaps we see here convergent
evolution of the role of Hox genes, but
using different members of the gene fam-
ily in the two groups.
Segment Homologies Between Mandibulate
and Chelicerate Arthropods. The serial or-
dering of Hox gene expression along the
body axis is largely conser ved in arthro-
pods, as it is in many other phyla. It is
perhaps more remarkable that, if seg-
ments of insects and chelicerates are sim-
ilarly numbered by counting from the first
appendage-bearing segment backwards,
then the anterior boundaries of expression
for several of the Hox genes lie between
the same pairs of segments—labial be-
tween segments 1 and 2, deformed be-
tween segments 2 and 3, etc. (10, 30, 32,
38) This pattern has led two groups to
propose that the anterior limits of Hox
gene expression are conserved ancestral
characteristics that reflect segment ho-
mologies and, on this basis, to resolve
between two long-standing models for
segment organization in insect and cheli-
cerate heads (10, 32). However, not all are
convinced that Hox gene expression
boundaries can be used as markers for
segment homology (30). Data from the
myriapods, and from other chelicerate
and crustacean groups, are needed to
resolve this question.
It does not seem implausible that the
anterior segments of the common arthro-
pod ancestor already possessed unique
molecular identities, defined by Hox
genes, and that these may have become
fixed, even if they were not reflected in
overt specialization of appendages. They
may have controlled patterns of cell spe-
cialization in the mesoderm or nervous
system, and only subsequently acquired
more extensive roles in the control of
external segment morphology. The acqui-
sition of such new roles has been well
documented for subsequent evolutionary
steps in the insect lineage [e.g., appendage
suppression (39)]. However, I find it hard
to maintain the argument (10) that seg-
ments can be homologized throughout the
trunk by conserved patterns of Hox gene
expression. It is clear that domains of
Ubx
abdA Hox gene expression vary
with respect to ordinal segment number,
even in quite closely related crustacean
groups (26).
Hox Genes and Segment Modification in Crus-
tacea. The crustacea in particular exhibit a
wonderful diversity of segment specializa-
tion and tagmosis. This diversity has three
aspects. One is the diversity of segments in
the adult of a single species. This is at its
most extreme in the Malacostraca, with as
many as 14 clearly distinct segment types.
We do not know in detail how this diver-
sity is controlled, but all of the evidence
suggests that it does not require the pro-
liferation of Hox genes. It is likely that the
required diversity of Hox codes is pro-
vided by increased complexity in the
regulation of a constant set of Hox genes
(40). One case in which it seems that the
number of Hox genes may have changed
is in the cirripedes—but this is a case of
gene loss, not gain. Barnacles appear to
have lost the Hox gene abdominal-A,
concomitant with loss of abdominal seg-
ments (41).
A second aspect of segment diversity is
that which has arisen between species. The
diverse forms that any one segment exhib-
its in different species probably reflect, in
large part, changes downstream of the
Hox genes. However, when it is the orga-
nization of segment types along the body
axis that varies between species, then it
seems more likely that the Hox genes will
be directly involved. Averof and Patel (26)
have examined one such case of segment
diversification—the recruitment of
anterior thoracic segments to generate
auxiliary feeding appendages called max-
illipeds. This has occurred repeatedly in
several crustacean lineages. In each case
tested, this transformation has been ac-
companied by a shift in the limits of
expression of Ubx
abd-A related Hox
genes—from an inferred primitive bound-
ary at the anterior of the first thoracic
segment, to a more posterior segment.
A third aspect of segment diversity, all
too easily forgotten by Drosophila genet-
icists, is the diversity of segment morphol-
ogy during ontogeny. (The appendage
morphology of maggots is not rich!) Indi-
rect developing crustaceans are famous
for their range of larval forms. In these
larvae, the morphology of a single seg-
ment may change dramatically at specific
stages in the life cycle, often associated
with changes in locomotory or feeding
behavior. Perhaps even more remarkably,
tagmosis itself may be altered, with the
pattern of segment similarity shifting be-
tween molts (42).
These striking changes may be achieved
in two ways. The same Hox proteins may
exert differential effects at different
stages in development, perhaps because
hormonal changes modify the combinato-
rial input that controls segment morphol-
ogy. Alternatively, the axial extent of Hox
gene expression may itself change at dif-
ferent stages of development. An exam-
ple of this second mode has recently
been demonstrated in Porcellio, an isopod
crustacean.
In this pillbug (woodlouse) the series of
larval forms has been compressed into a
series of embryonic stages, but some of the
morphological transitions characteristic of
the indirect developing ancestor are still
evident. For example, the first thoracic ap-
pendage develops as a walking appendage,
identical to those of the more posterior
segments until mid embryogenesis, where-
upon it diverges from the pathway of its
thoracic homologues, coming to form a
maxilliped. Abzhanov and Kaufman (43)
show that this transition is associated with a
transition in the pattern of Hox gene expres-
sion—Scr protein is initially repressed in the
first thoracic appendage, but later ex-
pressed. Intriguingly, and exceptionally for
the Hox genes, the early regulation (repres-
sion) of Scr is at the level of translational
control, not transcription.
Conclusions. Evolutionary developmental
studies are mapping the relationships be-
tween gene expression and the diversity of
form within arthropods. We can begin to
propose models for the underlying
changes in developmental mechanisms.
Techniques to manipulate gene expres-
sion in arthropods are developing fast,
promising that the role of individual genes
may soon be tested directly. However, we
should beware of trying to explain too
much, with too little. No one gene fami-
ly—not even the Hox genes—will provide
a sufficient tool to explain the whole of
any major step in evolution.
My thanks to Michalis Averof, Max Telford,
and Chris Klingenberg for comments on the
manuscript. Work in this laboratory has been
supported principally by the Wellcome Trust
and the Biotechnology and Biological Sciences
Research Council of the United Kingdom.
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Chinese mitten crab (Eriocheir sinensis) is an important aquaculture species in Crustacea. Functional analysis, although essential, has been hindered due to the lack of sufficient genomic or transcriptomic resources. In this study, transcriptome sequencing was conducted on 59 samples representing diverse developmental stages (fertilized eggs, zoea, megalopa, three sub-stages of larvae, juvenile crabs, and adult crabs) and different tissues (eyestalk, hepatopancreas, and muscle from juvenile crabs, and eyestalk, hepatopancreas, muscle, heart, stomach, gill, thoracic ganglia, intestine, ovary, and testis from adult crabs) of E. sinensis. A comprehensive reference transcriptome was assembled, including 19,023 protein-coding genes. Hierarchical clustering based on 128 differentially expressed cuticle-related genes revealed two distinct expression patterns during the early larval developmental stages, demonstrating the distinct roles of these genes in “crab-like” cuticle formation during metamorphosis and cuticle calcification after molting. Phylogenetic analysis of 1406 one-to-one orthologous gene families identified from seven arthropod species and Caenorhabditis elegans strongly supported the hypothesis that Malacostraca and Branchiopoda do not form a monophyletic group. Furthermore, Branchiopoda is more phylogenetically closely related to Hexapoda, and the clade of Hexapoda and Branchiopoda and the clade of Malacostraca belong to the Pancrustacea. This study offers a high-quality transcriptome resource for E. sinensis and demonstrates the evolutionary relationships of major arthropod groups. The differentially expressed genes identified in this study facilitate further investigation of the cuticle-related gene expression networks which are likely associated with “crab-like” cuticle formation during metamorphosis and cuticle calcification after molting.
... Insect legs are homologous structures that have received lots of attention in developmental genetics. Yet, the regulatory processes underlying homology divergence in males and females remain poorly understood [210,211]. In M. longipes, leg divergence is more pronounced in males than females. ...
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From the DNA molecule to the more complex phenotypes, variation is a universal process in life and living organisms. The innumerable differences that exist between species are probably one of the most manifest examples. Yet, all this diversity would never have occurred in nature without some pre-existing divergence within species. One of the most striking examples of intraspecies variation appears in sexual organisms, between males and females. Understanding the environmental and genetic factors influencing sexual divergence is a longstanding question in evolutionary biology. To this end, I focus here on a new insect model system, Microvelia longipes, which has the particularity to have evolved an extreme case of sexual dimorphism in the rear legs. Males display exaggerated long rear legs compared to females but also an extreme variability in these leg lengths from one male to another. We identified that M. longipes males use their exaggerated legs as weapons during male-male competition. Males with longer legs have more chance to access females on egg-laying sites and therefore increase their reproductive success. Moreover, fitness assays and comparative studies between Microvelia species revealed that the intensity of male competition was associated with the exaggeration and hypervariability of the rear legs in M. longipes males. In a second approach, we studied the developmental and genomic basis of this sexual dimorphism through a comparative transcriptomic analysis and identified genes and genomic regions associated with male exaggerated legs and ultimately with sexual selection. Overall, the integrative approach used in this work allows to establish Microvelia longipes as a promising new model system to study the influence of sexual selection in adaptive evolution.
... Panarthropods possess repeated appendages along their A/P axes and appendage types correspond to A/P segmental position, thus limb homology has long been based on segmental identity (Scholtz and Edgecombe 2006). Elucidation of segment-specific Hox gene expression in arthropods has shifted this conception of identity to one in which Hox expression domains define segments and corresponding limbs, and diverse limb types have been homologized between clades based on this system (e.g., Akam 2000;Eriksson et al. 2010). A full discussion of Hox appendage identity is beyond the scope of this study, but a few points must be made. ...
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The arthropod body plan is widely believed to have derived from an ancestral form resembling Cambrian-aged fossil lobopodians, and interpretations of morphological and molecular data have long favored this hypothesis. It is possible, however, that appendages and other morphologies observed in extinct and living panarthropods evolved independently. The key to distinguishing between morphological homology and homoplasy lies in the study of developmental gene regulatory networks (GRNs), and specifically, in determining the unique genetic circuits that construct characters. In this study, I discuss character identity and panarthropod appendage evolution within a developmental GRN framework, with a specific focus on potential limb character identity networks ("ChINs"). I summarize recent molecular studies, and argue that current data do not rule out the possibility of independent panarthropod limb evolution. The link between character identity and GRN architecture has broad implications for homology assessment, and this genetic framework offers alternative approaches to fossil character coding, phylogenetic analyses, and future research into the origin of the arthropod body plan.
... Inventions in molecular and cellular biology increasingly facilitate the emergence of new experimental systems for developmental genetic studies. The morphological and ecological diversity of the phylum Arthropoda makes them an ideal group of animals for comparative studies encompassing embryology, adaptation of adult body plans and life history evolution ( Akam, 2000;Budd and Telford, 2009;Peel et al., 2005;Scholtz and Wolff, 2013). While the most widely studied group are Hexapods, reflected by over a hundred sequencing projects available in the NCBI genome database, genomic data in the other three sub-phyla in Arthropoda are still relatively sparse. ...
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ELife digest The marine crustacean known as Parhyale hawaiensis is related to prawns, shrimps and crabs and is found at tropical coastlines around the world. This species has recently attracted scientific interest as a possible new model to study how animal embryos develop before birth and, because Parhyale can rapidly regrow lost limbs, how tissues and organs regenerate. Indeed, Parhyale has many characteristics that make it a good model organism, being small, fast-growing and easy to keep and care for in the laboratory. Several research tools have already been developed to make it easier to study Parhyale. This includes the creation of a system for using the popular gene editing technology, CRISPR, in this animal. However, one critical resource that is available for most model organisms was missing; the complete sequence of all the genetic information of this crustacean, also known as its genome, was not available. Kao, Lai, Stamataki et al. have now compiled the Parhyale genome – which is slightly larger than the human genome – and studied its genetics. Analysis revealed that Parhyale has genes that allow it to fully digest plant material. This is unusual because most animals that do this rely upon the help of bacteria. Kao, Lai, Stamataki et al. also identified genes that provide some of the first insights into the immune system of crustaceans, which protects these creatures from diseases. Kao, Lai, Stamataki et al. have provided a resource and findings that could help to establish Parhyale as a popular model organism for studying several ideas in biology, including organ regeneration and embryonic development. Understanding how Parhyale digests plant matter, for example, could progress the biofuel industry towards efficient production of greener energy. Insights from its immune system could also be adapted to make farmed shrimp and prawns more resistant to infections, boosting seafood production. DOI: http://dx.doi.org/10.7554/eLife.20062.002
... Although speculative, we believe that most morphological changes are associated with control genes. Studies on the regulation and control of development in arthropods have shown that changes in appendage structure and body form can be achieved with small genetic changes (Akam, 2000;Averof and Patel, 1997;Nagy, 1998). Further, proteins associated with regulatory genes may acquire new functions (Grenier and Carroll, 2000;Levine, 2002;Ronshaugen et al., 2002). ...
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Cumaceans are small benthic crustaceans. They have a marine cosmopolitan distribution with diversity increasing with depth. There are approximately 1,400 described species of cumaceans. Despite the fact that they offer a good model for the study of morphological evolution and biogeography, the studies on the Order Cumacea are almost restricted to work at the alpha taxonomy level. This thesis contributes to the systematics of Cumacea. The phylogenetic relationships within the Cumacea were studied using newly obtained partial amino acid sequences from the mitochondria1 gene Cytochrome Oxidase I. Among other findings, phylogenetic analyses revealed that the families Bodotriidae, Leuconidae, and Nannastacidae, characterized by the presence of a pleotelson (telson fused to last abdominal segment), form a monophyletic and derived clade. The gene tree topology suggests that some characters traditionally used in cumacean diagnoses represent homoplasies. The cumacean family Bodotriidae is divided into three subfamilies and 34 genera with over 350 species, all of which were morphologically analyzed for 114 variable characters. Two main accomplishments were a result of this study. First, the phylogenetic relationships of the subfamilies and genera within the family were studied. The subfamily Mancocumatinae failed to resolve as a monophyletic group, the subfamily Vaunthompsoniinae are basal bodotriids, and the subfamily Bodotriinae is the most derived clade. A Tethyan origin for the bodotriid fauna is suggested, with radiation along the Atlantic Ocean during the Cretaceous. Phylogenetic and character evolution analyses support several changes to the classification of Bodotriidae. For example, the subfamily Mancocumatinae should be incorporated into the subfamily Vaunthornpsoniinae, the genus Coricuma should be incorporated into the Bodotriinae, and the species of the genera Heternma, Mossambicuma, Pseudocydaspis, should be incorporated into the genera Cumopsis, Eocuma and Cydaspis, respectively. Second, a comprehensive morphological work on the Family Bodotriidae was completed incorporating the suggested changes in the taxonomy . The generic review includes a dichotomous key and rediagnosis of each of the genera of the Family. A new species of Austrocuma from the eastern coast of lndii is described. Among other characters, the uniqueness of this species relies on the presence of onty four pleopods on the males.
... Arthropods are the largest animal phylum, estimated to contain at least 80% of all animal species (Akam, 2000;Odegaard, 2000;Regier et al., 2010). Genome-wide molecular evolutionary research in this vast taxonomic group has largely focused on holometabolous insect models of the genera Drosophila, Anopheles, Tribolium, Nasonia and Apis, or the branchiopod crustacean Daphnia (Colbourne et al., 2011;Group et al., 2010;Neafsey et al., 2015;Richards et al., 2008;Stark et al., 2007;Weinstock et al., 2006;Wiegmann and Yeates, 2005). ...
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... And there are a great number of hypotheses on this theme (Fryer 1992;Kukalova-Peck 1992;Shear 1992;Panganiban et al. 1995;Budd 1996Budd , 1997Fortey and Thomas 1997;Hou and Bergström 1997). The 'arthropodization' from lobopods to arthropods, suggested by Budd (1996Budd ( , 1997Budd ( , 1999 based on the analysis of the 'AOPK' group, has been endorsed by molecular biologists (Shubin et al. 1997;Akam 2000;Maxmen et al. 2005). The discovery of Magadictyon cf. ...
... The arthropods comprise more than 80% of animal species currently living and are a highly diverse phylum of exoskeleton organisms that includes terrestrial insects and aquatic crustaceans (Akam 2000;Odegaard 2000;Regier et al. 2010). Despite the diversity of this phylum, research in genome evolution in arthropods remains focused either on species of flies and mosquitoes, primarily Drosophila and Anopheles (Diptera) (Neafsey et al. 2015;Stark et al. 2007;Wiegmann and Yeates 2005), or on a few other holometabolous insects (those with complete metamorphosis; the so-called "higher" insects) such as beetles (Coleoptera) or wasps (Hymenoptera) (Brown et al. 2008;Group et al. 2010;Weinstock et al. 2006). ...
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In protein coding genes, synonymous codon usage and amino acid composition correlate to expression in some eukaryotes, and may result from translational selection. Here, we studied large-scale RNA-seq data from three divergent arthropod models, including cricket (Gryllus bimaculatus), milkweed bug (Oncopeltus fasciatus) and the amphipod crustacean Parhyale hawaiensis, and tested for optimization of codon and amino acid usage relative to expression level. We report strong signals of AT3 optimal codons (those favored in highly expressed genes) in G. bimaculatus and O. fasciatus, whilst weaker signs of GC3 optimal codons were found in P. hawaiensis, suggesting selection on codon usage in all three organisms. Further, in G. bimaculatus and O. fasciatus, high expression was associated with lowered frequency of amino acids with large size/complexity (S/C) scores in favor of those with intermediate S/C values; thus selection may favor smaller amino acids whilst retaining those of moderate size for protein stability or conformation. In P. hawaiensis, highly transcribed genes had elevated frequency of amino acids with large and small S/C scores, suggesting a complex dynamic in this crustacean. In all species, the highly transcribed genes appeared to favor short proteins, high optimal codon usage, specific amino acids, and were preferentially involved in cell-cycling and protein synthesis. Together, based on examination of 1,680,067, 1,667,783 and 1,326,896 codon sites in G. bimaculatus, O. fasciatus, and P. hawaiensis respectively, we conclude that translational selection shapes codon and amino acid usage in these three Pancrustacean arthropods.
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The Myriapoda, composed of millipedes and centipedes, is a fascinating but poorly understood branch of life, including species with a highly unusual body plan and a range of unique adaptations to their environment. Here, we sequenced and assembled 2 chromosomal-level genomes of the millipedes Helicorthomorpha holstii (assembly size = 182 Mb; shortest scaffold/contig length needed to cover 50% of the genome [N50] = 18.11 Mb mainly on 8 pseudomolecules) and Trigoniulus corallinus (assembly size = 449 Mb, N50 = 26.78 Mb mainly on 17 pseudomolecules). Unique genomic features, patterns of gene regulation, and defence systems in millipedes, not observed in other arthropods, are revealed. Both repeat content and intron size are major contributors to the observed differences in millipede genome size. Tight Hox and the first loose ecdysozoan ParaHox homeobox clusters are identified, and a myriapod-specific genomic rearrangement including Hox3 is also observed. The Argonaute (AGO) proteins for loading small RNAs are duplicated in both millipedes, but unlike in insects, an AGO duplicate has become a pseudogene. Evidence of post-transcriptional modification in small RNAs-including species-specific microRNA arm switching-providing differential gene regulation is also obtained. Millipedes possesses a unique ozadene defensive gland unlike the venomous forcipules found in centipedes. We identify sets of genes associated with the ozadene that play roles in chemical defence as well as antimicrobial activity. Macro-synteny analyses revealed highly conserved genomic blocks between the 2 millipedes and deuterostomes. Collectively, our analyses of millipede genomes reveal that a series of unique adaptations have occurred in this major lineage of arthropod diversity. The 2 high-quality millipede genomes provided here shed new light on the conserved and lineage-specific features of millipedes and centipedes. These findings demonstrate the importance of the consideration of both centipede and millipede genomes-and in particular the reconstruction of the myriapod ancestral situation-for future research to improve understanding of arthropod evolution, and animal evolutionary genomics more widely.
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Recent advances in developmental genetics of Drosophila have uncovered some of the key molecules involved in the positioning and outgrowth of the leg primordia. Although expression patterns of these molecules have been analyzed in several arthropod species, broad comparisons of mechanisms of limb development among arthropods remain somewhat speculative since no detailed studies of limb development exist for crustaceans, the postulated sister group of insects. As a basis for such comparisons, we analysed limb development in a primitive branchiopod crustacean, Triops longicaudatus. Adults have a series of similar limbs with eight branches or lobes that project from the main shaft. Phalloidin staining of developing limbs buds shows the distal epithelial ridge of the early limb bud exhibits eight folds that extend in a dorsal ventral (D/V) arc across the body. These initial folds subsequently form the eight lobes of the adult limb. This study demonstrates that, in a primitive crustacean, branched limbs do not arise via sequential splitting. Current models of limb development based on Drosophila do not provide a mechanism for establishing eight branches along the D/V axis of a segment. Although the events that position limbs on a body segment appear to be conserved between insects and crustaceans, mechanisms of limb branching may not.
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DNA sequence analysis dictates new interpretation of phylogenic trees. Taxa that were once thought to represent successive grades of complexity at the base of the metazoan tree are being displaced to much higher positions inside the tree. This leaves no evolutionary “intermediates” and forces us to rethink the genesis of bilaterian complexity.
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Arthropods exhibit great diversity in the position, number, morphology, and function of their limbs. The evolutionary relations among limb types and among the arthropod groups that bear them (insects, crustaceans, myriapods, and chelicerates) are controversial. Here, the use of molecular probes, including an antibody to proteins encoded by arthropod and vertebrate Distal-less (Dll and Dlx) genes, provided evidence that common genetic mechanisms underlie the development of all arthropod limbs and their branches and that all arthropods derive from a common ancestor. However, differences between crustacean and insect body plans were found to correlate with differences in the deployment of particular homeotic genes and in the ways that these genes regulate limb development.
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The powerful combination of genetic, developmental and molecular approaches possible with the fruit fly, Drosophila melanogaster, has led to a profound understanding of the genetic control of early developmental events. However, Drosophila is a highly specialized long germ insect, and the mechanisms controlling its early development may not be typical of insects or Arthropods in general. The beetle, Tribolium castaneum, offers a similar opportunity to integrate high resolution genetic analysis with the developmental/molecular approaches currently used in other organisms. Early results document significant differences between insect orders in the functions of genes responsible for establishing developmental commitments.
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In Drosophila, Distalless (Dll) is critical in establishing the proximal/distal axis of the leg. Lack of proper Dll expression causes distal limb structures to be truncated or lost. Dll expression was examined through the course of development in the limbs of two crustaceans, Triops and Nebalia. Because the limbs of these two species are branched, they provide a comparison to the uniramous (unbranched) leg of Drosophila. In Triops and Nebalia, development of limb branches is not tightly coupled with Dll expression: in some cases, branches can arise prior to Dll expression and in others, certain branches never express Dll. These data suggest that, while Dll may indeed initiate overall limb outgrowth, limb branches are unlikely to be patterned by a simple iteration of the mechanism patterning the unbranched leg of Drosophila.
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The evolutionary relationships among arthropods are of particular interest because the best-studied model system for ontogenetic pattern formation, the insect Drosophila, is a member of this phylum. Evolutionary inferences about the developmental mechanisms that have led to the various designs of the arthropod body plan depend on a knowledge of the phylogenetic framework of arthropod evolution. Based on morphological evidence, but also on palaeontological consideration, the sister group of the insects is believed to be found among the myriapods. Using nuclear ribosomal gene sequences for constructing a molecular phylogeny, we provide strong evidence that the crustaceans and not the myriapods should be considered to be the sister group of the insects. Moreover, the degree of sequence divergence suggests that the diversification of the myriapods occurred during the Cambrian. Our findings have general implications for the course of land colonization by the different arthropod groups, as well as for the interpretation of primitive and derived features of arthropod morphology.
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We have used a monoclonal antibody that recognizes engrailed proteins to compare the process of segmentation in grasshopper, crayfish, and Drosophila. Drosophila embryos rapidly generate metameres during an embryonic stage characterized by the absence of cell division. In contrast, many other arthropod embryos, such as those of more primitive insects and crustaceans, generate metameres gradually and sequentially, as cell proliferation causes caudal elongation. In all three organisms, the pattern of engrailed expression at the segmented germ band stage is similar, and the parasegments are the first metameres to form. Nevertheless, the way in which the engrailed pattern is generated differs and reflects the differences in how these organisms generate their metameres. These differences call into question what role homologues of the Drosophila pair-rule segmentation genes might play in other arthropods that generate metameres sequentially.
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The Antp locus is involved in the development of the thorax of the larval and adult Drosophila. The absence of Antp+ function during embryogenesis results in the larval mesothorax exhibiting characteristics of the prothorax and an ensuing lethality; the loss of Antp+ function in the development of the adult thorax causes specific portions of the leg, wing and humeral imaginal discs to develop abnormally. Every Antp mutation, however, does not cause all of these developmental defects. Certain mutant alleles disrupt humeral and wing disc development without affecting leg development, and they are not deficient for the wild-type function required during embryogenesis. Other Antp mutations result in abnormal legs, but do not alter dorsal thoracic development. Mutations of each type can complement to produce a normal adult fly, which suggests that there are at least two discrete functional units within the locus. This hypothesis is supported by the fact that each of the developmental defects arises from the alteration of a different physical region within the Antp DNA. These observations indicate that the complete developmental role of the Antp locus is defined by the spatial and temporal regulation of the expression of several individual functional units.