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Amplification of band q22 of chromosome 21, including AML1, in older children with acute lymphoblastic leukemia: An emerging molecular cytogenetic subgroup

Authors:
representative of MM patients. Bone marrow mononuclear cells
were isolated by Ficoll–Hypaque sedimentation and extracted DNA
was modified for MSP by bisulfite using the CpGenome
TM
DNA
Modification Kit (Intergen, Purchase, USA). SOCS-1 gene promoter
regions were amplified with DNA methylated and unmethylated
specific primers as previously described.
5
A total of 51 samples of MM bone marrow cells were analyzed by
MSP. Selective methylation of SOCS-1 gene was found in 38/51
patients (74.5%). No correlation could be made between SOCS-1
gene methylation and gender, age, isotype, level of M-compo-
nent, stage of the disease, serum levels of albumin, creatinin,
calcium, b2-microglobulin, LDH, C-reactive protein, or response
to treatment. Overall survival was not significantly different
between patients with methylated and unmethylated SOCS-1 gene
(P¼0.58), median survival being estimated at 27.1 months (95% CI,
14.4–39.8) and 23.1 months (95% CI, 17.3–28.9), respectively
(Figure 1).
Methylation of SOCS-1 gene is frequent in MM, occurring at
frequencies of 75% in our series. It may represent an important
epigenetic event in the pathogenesis of MM. However, SOCS-1
gene methylation does not seem to influence the clinical outcome of
MM patients.
S Depil
1,2
A Saudemont
1,2
B Quesnel
1,2
1
Unite
´INSERM 524, IRCL, Lille, France;
2
Service des Maladies du Sang, CHU de Lille,
Lille, France
References
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5 Yoshikawa H, Matsubara K, Qian GS, Jackson P, Groopman JD,
Manning JE et al. SOCS-1, a negative regulator of the JAK/STAT pathway,
is silenced by methylation in human hepatocellular carcinoma and
shows growth-suppression activity. Nat Genet 2001; 28: 29–35.
6 Galm O, Yoshikawa H, Esteller M, Osieka R, Herman JG. SOCS-1, a
negative regulator of cytokine signalling, is frequently silenced by
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Amplification of band q22 of chromosome 21, including AML1, in older children with
acute lymphoblastic leukemia: an emerging molecular cytogenetic subgroup
Leukemia (2003) 17, 1679–1682. doi:10.1038/sj.leu.2403000
TO THE EDITOR
Acute lymphoblastic leukemia (ALL) is a heterogeneous disease at
the chromosomal and molecular levels. Several subgroups of
chromosomal abnormalities have been identified in pediatric B-cell
precursor ALL: hyperdiploidy in which more than 50 chromosomes
are present, near haploidy, and translocations t(12;21), t(1;19),
t(9;22), and t(4;11) or other 11q23 abnormalities. With the
development of specific fluorescence in situ hybridization (FISH)
probes to evaluate metaphase chromosomes or interphase nuclei,
chromosomal abnormalities can now be detected when leukemic
cells have cryptic alterations or a karyotype that cannot be
determined. The frequent use of TEL-AML1 probes to evaluate the
cryptic t(12;21) have identified isolated cases in which the AML1
gene is amplified or over-represented.
1–5
This chromosomal
abnormality is most often detected by conventional cytogenetic
methods as a tandem duplication of chromosome band 21q22 or as
marker chromosomes of unknown origin.
1-5
However, in B-cell
precursor ALL, various numerical and structural abnormalities of
chromosome 21 can lead to multiple copies of AML1. Among the
abnormalities are trisomy or tetrasomy 21 (which can be the sole
abnormality or associated with high hyperdiploidy 450 chromo-
somes), and isochromosomes 21q or ider(21q)t(12;21). Therefore,
more stringent molecular methods of detection are needed to
specifically identify AML1 amplification.
Before we attempted to confirm that amplification of band 21q22,
including AML1, is characteristic of an emerging ALL subtype, we
developed a FISH-based inclusion criteria for detection of AML1
amplification/over-representation by FISH. These consisted of
detection of four or more AML1 signals in interphase nuclei, and
the colocalization of three or more signals on the same metaphase
chromosome; when no mitotic cells were obtained, the presence of
an AML1 amplification was considered to have occurred if FISH
resulted in five or more AML1 signals in interphase nuclei. It is
generally accepted that up to four to five copies of a gene the term of
over-representation should be prefered, and above that number
amplification can be used. On the basis of these inclusion criteria,
we report here 16 pediatric patients with B-cell precursor ALL and
amplification/over-representation of band q22 including AML1
(Table 1).
Patients were referred to pediatric centers in France (Centre
Hospitalier Universitaire CHU Brest; CHU Nantes; CHU Nice,
France; CHU Saint-Louis, Paris, France), St Jude Children’s Research
Hospital (Memphis, TN, USA), Mount Sinai Medical Center (New
York, NY, USA), or Chaim Sheba Medical Center (Tel-Hashomer,
Israel). The diagnosis of B-cell precursor ALL was based on the
morphology criteria of the French–American–British Group, the
expression of B-cell-associated antigens CD19, CD22, CD10, and
the absence of membrane immunoglobulins. Cytogenetic analyses
were performed on mitotic bone marrow or blood cells according to
standard procedures. Chromosomes were trypsin-Wright or RHG
banded. Karyotyping was carried out according to the guidelines of
the International System for Human Cytogenetic Nomenclature
(ISCN 1995). Patients were enrolled in one of the following front-
line clinical trials: protocols FRALLE 1993 and 2000, EORTC 58981,
St Jude protocols Total XII and XIII, and Berlin–Frankfurt–Munster
(BFM) protocols 1995 and 1998. The studies were approved by the
appropriate ethic committees of each institution, and informed
consent was obtained from patients or guardians.
In five of the seven cytogenetic laboratories involved in this study,
the detection by FISH of the t(12;21) was performed prospectively
for the last 2 years on all newly diagnosed B-cell ALL cases. In the
remaining two centers, FISH using a probe specific to the TEL-AML1
fusion gene is usually performed to confirm positive PCR results, or
when chromosome 12p or chromosome 21 abnormalities are
suspected.
The LSI TEL-AML1 ES dual-color translocation probe (Vysis,
Downer’s Grove, IL, USA and Adgenix, Voisin-Le-Bretonneux,
France) was used by all laboratories. This probe is a mixture of the
Received 14 January 2003; accepted 28 March 2003
Correspondence: Dr SD Raynaud, Unite
´de Cytoge
´ne
´tique des
He
´mopathies Malignes, Ho
ˆpital de l’Archet, BP79, Nice Cedex
06202, France; Fax: +33 4 920 364 65
Correspondence
1679
Leukemia
LSI TEL probe labeled with Spectrum Green and the AML1 probe
labeled with Spectrum Orange. The approximately 500 kb AML1
probe spans the entire AML1 gene and contains genomic DNA
centromeric to this gene, which is located at 21q22. The probe was
used according to the manufacturer’s recommendations. Briefly,
slides were denatured at 751C for 2 min; probes were denatured at
the same temperature for 5 minutes. Subsequently, the two were
hybridized overnight at 371C. Hybridization signals were evaluated
by using DAPI/FITC/rhodamine triple-band pass filter sets.
According to our FISH inclusion criteria, we found that the
leukemic cells from the 16 pediatric patients with newly diagnosed
B-cell precursor ALL had multiple copies of band q22 including
AML1. The AML1 copy number ranged from four to more than 10
per interphase nuclei or metaphase chromosomes (Table 1 and
Figure 1). Multiple 21q22 and AML1 signals were clustered in an
area within the interphase nuclei in most cases (Figure 1, panels A–
C), and were consistently located on the same metaphase
chromosome. All cases in this study had high percentages of cells
with the AML1 amplification; in fact, almost all of the leukemic cells
contained this amplification, a finding consistent with the hypoth-
esis that this is a major oncogenic event. Two signals specific for the
TEL probe were observed in all cases.
When conventional cytogenetic findings were evaluated, we
identified four ploidy patterns (Table 1): pseudodiploid (n¼8), low
hyperdiploid (from 47 to p50 chromosomes) (n¼3), high
hyperdiploid 450 chromosomes (n¼2), and diploid (n¼1). No
karyotype was determined for two additional cases because of the
absence of mitotic cells; no DNA index was available for these
patients. All patients in the pseudodiploid and low hyperdiploid
groups had marker chromosomes, numerical or structural abnorm-
alities of chromosome 21 such as add(21q), del(21q), trp(21q),
qdq(21q), or both marker chromosomes and chromosome 21
abnormalities. FISH with whole-chromosome painting probes
showed that these marker chromosomes originated from chromo-
some 21 (data not shown). FISH using the locus-specific AML1
probe resulted in the appearance of several signals on a single
chromosome (Figure 1, panel d). Conventional cytogenetics
revealed various structural or numerical chromosome abnormalities
Table 1 Pediatric B-cell precursor ALL cases with AML1 amplification (present study and published cases)
Study
(references)
Case No Sex/Age WBC 10
9
/l
(blast %)
Karyotypes AML1 signals by FISH
(% of abnormal IN)
Follow-up CR
Pseudodiploid
PS 1 F/11 18 (60) 46,XX,del(8)(q?),+13,-19,add(21)(p) [5] >10 (60) 20m
+
PS 2 F/13 2.8 (50) 46,XX,-21,+mar [9] /46,XX [2] 5–10 (92) 18m
+
PS/(4) 3* M/17 1.0 (50) 46,XY,add(1)(q25),add(21)(q21) [6] /46,XY [14] 8 (98) 19m
+
PS/(4) 4* F/19 10.1 (72) 46,XX,del(7)(p14p21),-21,+mar [10] /46,XX [2] 6–8 (99) 21m
+
PS 5 M/14 2.2 (22) 46,XY,inv(7)(p?15q?21),-21,+mar [2] /46,XY [4] 5–7 (72) 23m, 2m
+
PS 6 M/12 15.1 (70) 46,XY,-21,+mar [8] 5–7 (98) 2m
+
PS 7 F/13 3.8 (1) 46,XX,del(7)(q22q35),del(11)(p12),add(21)(p11.2)
[9] /46,XX [5]
5 (96.5) 61, 56, 10m
+
PS 8 F/15 9.9 (64) 46,XX,trp(21)(q11.2q22) [13] /46,XX [7] 4 (68) 86m
+
(1) #1 M/12 4.3 (NA) 46,XY,del(18)(p11),der(21) 10–15 NA
(2) #3 F/11 NA 46,XX,-21,+mar 564m
(2) #1 M/15 4.3 (35) 46,X,-Y,add(21)(q22),+mar1 [8] /46,XY [12] 4–5 32m
+
(3) #1 F/10 1.4 (4) 46,XX,der(21) [2] 4–5 14m+
(7) #40 F/15 NA 46,XX,add(1)(p?),del(6)(q25) >4 13m
+
(8) #44 M/13 7.6 (NA) 46,XY,i(9)(q10),-16,+mar (trp 21q using SKY) 4 18m
+
Low hyperdiploid
PS/(5) 9* F/8 0.9 (1.5) 47,XX,+X,del(21)(q22),der(21) [12] /46,XX [4] 510 (85) 9m
+
PS/(10) 10* F/12 7.1 (3) 48,XX,+X,+10,del(11)(q23),qdp(21)(q11q22)
[13] /46,XX [7]
5 (66) 48m+
PS 11 F/13 6.6 (55) 47,XX,?add(4)(q31),del(7)(q3?2),i(21),+mar
[5] /46,XX [10]
5 (37) 10m
+
(3) #2 M/11 5.9 (0) 47,X,+X,inv(Y)(p11.2q12),+10,-20,der(21) [20] 6 7m
+
(1) #2 F/5.6 26.3 (NA) 48,XX,-20,+der(21),+2mar 6 NA
High hyperdiploid >50 chromosomes
PS 12 M/5 7.2 (NA) 56,XY,+X,+Y,+6,+10,+14,+17,-19,+21,
+22,+mar1,+mar2, +mar3 [5] /46,XY [18]
5–10 (30) 24m
+
PS 13 F/6 3,1 (12) 54,XX,+X,+6,+9,+14,+17,+18,+2mar [12] 4–10 (93) 5m+
(2) #2 M/6 4.9 (61) 53,XY,+X,+Y,inv(3),add(4),+9,+17,+21,+21,
+add(21)(q22)
4–5 Na
Normal karyotype
PS 14 M/11 NA 46,XY [30] 3–10 (NA) NA
(9) #1 F/15 NA 46,XX [20] 15–20 (70) Relapse
(8) #64 M/14 14.5 (NA) 46,XY 6–15 48m
+
(7) #38 M/2.9 NA 46,XY 4–5 14m
+
(7) #39 F /3.4 NA 46,XY >4 8m
+
Karyotype failure
PS 15 F/11 1.6 (4) Failure >10 (97) 75m
+
PS 16 M/7 NA Failure 4–10 (NA) NA
(8) #65 F/8 2.0 (NA) Failure 6–15 52m+
Notes: PS, cases from the present study; *, cases partially described in Penther et al,
4
Morel et al
5
and Mathew et al;
10
IN, interphase nuclei CR m+, months of ongoing
complete remission; NA, not available. The chromosomes that most likely hybridized with AML1 probe were written in bold.
Correspondence
1680
Leukemia
were also present in most cases. Among the patients in the high
hyperdiploidy group, at least two did not have tetrasomy 21 as
indicated by conventional cytogenetics. This finding suggests
that the 21q22 amplification could be a functional equivalent of
tetrasomy 21 in high hyperdiploid ALL. Moreover, the marker
chromosome in which AML1 was amplified was duplicated in
patient 13 (Figure 1, panel b). However, caution should be taken in
this interpretation as possible asymmetry of replication and the
presence of twin/double spots cannot be ruled out in some of these
cases. The interpretation of cases with normal karyotypes and 21q22
amplification is equivocal; probably the leukemic cells are not
dividing; alternatively the amplification could be cryptic. In all
cases, conventional cytogenetics, FISH and/or molecular analyses
did not detect recurrent translocations, including the t(12;21),
t(9;22), and t(4;11), in association with AML1 amplification.
When the major clinical and biological features of the pediatric
patients with ALL and multiple copies of 21q22 including AML1
were analyzed, particular features appeared to be associated with
the pseudodiploid and low hyperdiploid groups. Within these
groups (n¼11), the median age was 13 years (range, 8–19); in
contrast, the two patients in the high hyperdiploid group were only
5 and 6 years old. The peripheral white blood cells (WBCs) counts at
diagnosis were low (median, 6.6 10
3
/ml; range, 0.9–18). In
comparison, the median age of patients with B-cell precursor ALL
in the FRALLE 93 trial (n¼1195) was 4.7 years (range, 0.1 to 19
years) and the median WBC count was 9.5 10
3
/ml (range, 0.3–
1350).
6
Immunological analysis using a standard antibody panel
revealed common CD10-positive B-cell precursor phenotype in all
cases. Furthermore, six cases were early pre-B (Cm
, sIgm
), five
were pre-B (Cm
+
, sIgm
) and one was transitional (Cm
+
, sIgm
+
). Some
genetically distinct subgroups of precursor-B ALL are closely
associated with characteristic but not unique immunophenotypes.
For example, t(1;19) with CD19
+
/CD10
+
/CD34
, pre-B ALL
phenotype; t(12;21) with CD19
+
/CD10
+
/CD9
dim
/CD20
dim
and
either CD13
+
or CD33
+
; and t(4;11)(q21;q23) with CD19
+
/CD10
-
/
CD15
+
. We observed no particular association of 21q22 amplifica-
tion with immunophenotype. Remission was achieved in the 14
patients for whom clinical records were available. The median
follow-up period was 21 months (range, 0.5 to 127). Although two
of the patients relapsed, one is in second remission, and the other is
in third remission.
Using our FISH criteria, we evaluated cases from the literature
and identified 14 additional pediatric cases with ALL and
amplification or over-representation of 21q22, including eight cases
with pseudodiploidy or low hyperdiploidy. The clinical and
biological features of these eight patients were consistent with our
findings, including older age (median, 11.5 years) and low WBC
counts (median, 4.3 10
3
/ml) (Table 1).
The similarity in the characteristics of these cases suggests that
amplification of 21q22, including AML1, within pseudodiploid or
low hyperdiploid leukemic cells represents an emerging subtype of
B-cell precursor ALL, potentially distinct from the subtypes
characterized by the t(12;21) and other recurrent chromosome
abnormalities. A systematic prospective screening of AML1 ampli-
fication in ongoing ALL clinical trials is now necessary to determine
the frequency and the prognostic value of this cytogenetic
abnormality.
It is unknown what genes are the targets of the amplification
process. Besides AML1 there is evidence that 21q22.13-22.2 and
subtelomeric 21q band are also amplified (V Najfeld, data not
shown), and other gene(s) at 21q22 might be oncogenic target(s)
activated by amplification. Genomic and expression analyses
should help to elucidate the oncogenic mechanisms associated
with multiple copies of 21q22 and AML1 amplification in this newly
recognized molecular cytogenetic subgroup of ALL.
Acknowledgements
This study was supported in part by grants from the National
Institutes of Health (CA 21765), the American Lebanese Syrian
Associated Charities, and the French Department of Health
(Programme de Soutien aux Innovations Diagnostiques et The
´r-
apeutiques Couˆteuses). We thank Dr JC Jones (St Jude Children’s
Research Hospital) for critical reading of the paper.
J Soulier
1
L Trakhtenbrot
2
V Najfeld
3
JM Lipton
3
S Mathew
4
H Avet-Loiseau
5
M De Braekeleer
6
S Salem
7
A Baruchel
1
SC Raimondi
8
SD Raynaud
7
1
Centre Hospitalier Universitaire (CHU) Saint
Louis, AP-HP, Paris, France;
2
The Chaim Sheba Medical Center,
Tel-Hashomer, Israel;
3
The Mount Sinai Medical Center, New York,
NY, USA;
4
New York Presbyterian Hospital-Cornell
Campus Cornell University Weill Medical
College, New York, NY, USA;
5
CHU Nantes, France;
6
CHU Brest, France;
7
CHU Nice, France;
8
Jude Children’s Research Hospital, Memphis,
TN, USA
References
1 Niini T, Kanerva J, Vettenranta K, Saarinen-Pihkala UM, Knuutila S.
AML1 gene amplification: a novel finding in childhood acute
lymphoblastic leukemia. Haematologica 2000; 85: 362–366.
2 Busson-Le Coniat M, Nguyen Khac F, Daniel MT, Bernard OA, Berger R.
Chromosome 21 abnormalities with AML1 amplification in acute
lymphoblastic leukemia. Genes Chromosomes Cancer 2001; 32: 244–
249.
3 Dal Cin P, Atkins L, Ford C, Ariyanayagam S, Armstrong SA, George R
et al. Amplification of AML1 in childhood acute lymphoblastic
leukemias. Genes Chromosomes Cancer 2001; 30: 407–409.
4 Penther D, Preudhomme C, Talmant P, Roumier C, Godon A,
Mechinaud F et al. Amplification of AML1 gene is present in childhood
acute lymphoblastic leukemia but not in adult, and is not associated
with AML1 gene mutation. Leukemia 2002; 16: 1131–1134.
5 Morel F, Herry A, Le Bris MJ, Douet-Guilbert N, Le Calvez G, Marion V
et al. AML1 amplification in a case of childhood acute lymphoblastic
leukemia. Cancer Genet Cytogenet 2002; 137: 142–145.
6 Donadieu J, Auclerc MF, Baruchel A, Perel Y, Bordigoni P, Landman-
Parker J et al. French Acute Lymphoblastic Leukaemia Group (FRALLE).
Prognostic study of continuous variables (white blood cell count,
peripheral blast cell count, haemoglobin level, platelet count and age) in
mar(AML1++)
mar1 (AML1++)
mar1 (AML1++)
ab
de
c
Figure 1 FISH analyses using AML1 (red signal) and TEL (green
signal) probes. AML1 amplification was detected on interphase nuclei
(ac) and metaphase chromosomes (de). Different patterns according
to karyotypes are shown: pseudodiploid (case 2, aand d), hyperdiploid
(case 13, band e), and karyotype failure (case 16, c). Arrows show
chromosomes with AML1 extra signals. Note that AML1 extra signals
are clustered in one area within interphase nuclei.
Correspondence
1681
Leukemia
childhood acute lymphoblastic leukaemia. Br J Cancer 2000; 83: 1617–
1622.
7 Martinez-Ramirez A, Urioste M, Contra T, Cantalejo A, Tavares A,
Portero JA et al. Fluorescence in situ hybridization study of TEL/AML1
fusion and other abnormalities involving TEL and AML1 genes.
Correlation with cytogenetic findings and prognostic value in children
with acute lymphocytic leukemia. Haematologica 2001; 86: 1245–
1253.
8 Nordgren A, Heyman M, Sahlen S, Schoumans J, Soderhall S,
Nordenskjold M et al. Spectral karyotyping and interphase FISH reveal
abnormalities not detected by conventional G-banding. Implications for
treatment stratification of childhood acute lymphoblastic leukaemia:
detailed analysis of 70 cases. Eur J Haematol 2002; 68: 31–41.
9 Sun G, Qin N, Sun N, Close P, Wang S, Yang X et al. Intrachromosomal
amplification of AML1 gene in a pre-B-ALL in relapse detected
predominantly in interphase cells by FISH. Blood 2001; 98(Suppl):
448.
10 Mathew S, Rao PH, Dalton J, Downing JR, Raimondi SC. Multicolor
spectral karyotyping identifies novel translocations in childhood acute
lymphoblastic leukemia. Leukemia 2001; 15: 468–472.
Classification of mature T-cell leukemias
Leukemia (2003) 17, 1682–1683. doi:10.1038/sj.leu.2403003
TO THE EDITOR
We agree with Kussick et al
1
that not every case of T-cell leukemia is
easily classifiable. However, the only way forward in establishing
the correct diagnosis and improving the WHO classification is to be
able to define new disease entities. Currently, there are no data in
the literature, nor in their letter, to support the view that there is a T-
cell leukemia that should be classified as T-cell chronic lymphocytic
leukemia (T-CLL). Historically, the term ‘T-CLL’ was first used by
Brouet et al
2
in 1975, when they described patients who would now
be considered largely to be part of T-cell large granular lymphocytic
(T-LGL) leukemia and a few cases that we now call T-prolympho-
cytic leukemia (T-PLL). A large number of subsequent reports and
data emerging from the literature have allowed us to separate T-LGL
leukemia from T-PLL.
3,4
Since then, there has been no clear
evidence that a third entity, T-CLL, as proposed by Kussick et al,
1
indeed exists. We recognize that in T-PLL there is a degree of
morphological heterogeneity, which is already considered in the
WHO classification
5
and in our experience.
3–6
Therefore, the
classification of T-cell malignancies should not be based purely
on the morphological criteria but substantiated by the underlying
molecular/genetic features as well as clinical manifestations. Not all
T-PLL cases have circulating cells with the morphology of
prolymphocytes as in the classic 1974 description by Galton, which
is more applicable to B-cell PLL. Although the term ‘prolymphocyte’
may not be ideal to use in this condition, it has been retained for
historical reasons and indeed, provided everybody understands the
disease behavior and what this term defines, this should not be an
issue.
On reviewing the representative case #1 reported by Kussick
et al,
1
it is likely that this represents an example of small-cell variant
T-PLL, as defined by the WHO classification and as seen by us in
many patients;
3–6
the cells in the black and white illustration appear
typical, with cytoplasmic blebs, although a nucleolus is not
prominent, a feature that is common in the small-cell T-PLL variant.
The phenotype CD4+, CD7+, CD8would fit very well with T-PLL.
Unfortunately, the key investigation, chromosome analysis and/or
overexpression of TCL-1 or mutational analysis for ATM features
also characteristic of T-PLL,
7–9
have not been performed. A second
case in which no details are given does not add weight to their
argument.
We would also disagree that there is a conflict between the REAL
and the WHO classifications.
5,10
The REAL was an attempt to start
grouping cases into disease entities; there was no clear separation of
cases within the mature T-cell leukemias, but since that time-
extensive work has been carried out and a consensus reached
between pathologists and clinicians. The very high WBC of case #1,
500 10
9
/l, fits with the aggressive nature of the disease. We are not
given any details of follow-up but, in our experience, without
appropriate treatment, the median survival of T-PLL is 7 months.
3
We feel that there is no need to go back to old classification systems
in which no clear description of disease entities was given; this will
not serve any useful purpose for clinicians dealing with these
conditions. In particular, since Campath-1H (Alemtuzumab) ap-
pears to be the treatment of choice in T-PLL,
11,12
the correct
diagnosis of this disease becomes clinically relevant.
Although we recognize that there is a degree of morphological
heterogeneity in T-PLL, the data on cytogenetics and molecular
genetics are overwhelming, with 90% of patients having inversion
14(q11;q32) and abnormalities of chromosome 8 in 80%.
7,9
Further
advances will, of course, be welcome, but when one undertakes
such studies, there is a need to investigate the patients adequately
in every aspect morphology, immunophenotype, cytogenetics
and clinical manifestations and then submit the material to
further molecular analysis, for example, gene profiling. Such ad-
vances may or may not define new disease entities but will refine
the diagnostic criteria and point to genes relevant to pathogenesis.
In these and other conditions such as B-cell CLL, the way to progress
is to agree on the basic data and then move forward with the new
information.
E Matutes
1
D Catovsky
1
1
Academic Department of Haematology &
Cytogenetics, The Royal Marsden Hospital,
London, UK
References
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be adequately classified under the new WHO classification of lymphoid
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Chronic lymphocytic leukaemia of T-cell origin. Immunological and
clinical evaluation in eleven patients. Lancet 1975; 2: 890–893.
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et al. Clinical and laboratory features of 78 cases of T-prolymphocytic
leukemia. Blood 1991; 78: 3269–3274.
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Hematopathol 2001; 43: 1589–1602.
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8 Yuille MAR, Coignet LJA, Abraham SM, Yaqub F, Luo L, Matutes E et al.
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Oncogene 1998; 16: 789–796.
Received 14 March 2003; accepted 26 March 2003
Correspondence: Dr E Matutes, Academic Department of Haematol-
ogy & Cytogenetics, The Royal Marsden Hospital, Fulham Road,
London SW3 6JJ, UK; Fax: +44 20 7351 6420
Correspondence
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... One of these rearrangements is an intrachromosomal amplification of chromosome 21 (iAMP21). The iAMP21 subtype was discovered in 2003 during routine fluorescence in situ hybridization (FISH) screening for the ETV6-RUNX1 fusion gene, when amplifications of the RUNX1 gene were observed (1,2). Currently, the most commonly used definition of iAMP21 is "three or more extra copies of RUNX1 on a single abnormal chromosome 21 (a total of five or more RUNX1 signals per cell)" (3,4). ...
... Order in which genes are located in the combined CRA, from centromere to telomere. Numbers indicate the order considering all 13 genes.2 Comparing 12 iAMP21 versus 143 B-other samples using limma. ...
Article
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Background and purpose Intrachromosomal amplification of chromosome 21 (iAMP21) is a rare subtype of B-cell precursor acute lymphoblastic leukaemia (BCP-ALL). It is unknown how iAMP21 contributes to leukaemia. The currently known commonly amplified region is 5.1 Mb. Methods We aimed to narrow down the common region of amplification by using high resolution techniques. Array comparative genomic hybridization (aCGH) was used to determine copy number aberrations, Affymetrix U133 Plus2 expression arrays were used to determine gene expression. Genome-wide expression correlations were evaluated using Globaltest. Results We narrowed down the common region of amplification by combining copy number data from 12 iAMP21 cases with 52 cases from literature. The combined common region of amplification was 1.57 Mb, located from 36.07 to 37.64 Mb (GRCh38). This region is located telomeric from, but not including, RUNX1 , which is the locus commonly used to diagnose iAMP21. This narrow region, which falls inside the Down Syndrome critical region, includes 13 genes of which the expression of eight genes was significantly upregulated compared with 143 non-iAMP21 B-other cases. Among these, transcriptional repressor RIPPLY3 (also known as DSCR6 ) was the highest overexpressed gene (fold change = 4.2, FDR < 0.001) and most strongly correlated (R = 0.58) with iAMP21-related genome-wide expression changes. Discussion The more precise definition of the common region of amplification could be beneficial in the diagnosis of iAMP21 based on copy number analysis from DNA sequencing or arrays as well as stimulate functional research into the role of the included genes in iAMP21 biology.
... Trauma-induced coagulopathy is a complex process involving many pathways, but loss and consumption of fibrinogen are a cornerstone of the pathology. 3 Moreover, it has been previously demonstrated that fibrinogen is both depleted and selectively oxidized in human trauma patients with traumainduced coagulopathy. 4 This article clearly demonstrates that modification of specific regions of fibrinogen through oxidative processes and subsequent degradation is fundamental to traumainduced coagulopathy. ...
... Leukemia relapse does not contribute to the excess of mortality in AYA after HSCT. AYA often present 169 high risk-ALL (Iacobucci and Mullighan, 2017;Soulier et al., 2003), and have a worse prognosis than 170 younger children even after pediatric-inspired first-line therapeutic protocols (Toft et al., 2018). ...
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Purpose: In the Acute Lymphoblastic Leukemia (ALL) landscape, Adolescents and Young Adults (AYA) often present high-risk diseases and increased chemotherapy-related toxicity. Studies analyzing outcomes of AYA after Hematopoietic Stem Cell Transplant (HSCT) are scarce. Our study aimed to compare the outcomes of children and AYA with ALL after HSCT and to determine factors influencing potential differences. Method: 891 patients, from the SFGM-TC registry, aged between 1 and 25 years who received HSCT between 2005 and 2012 were included. Outcomes of AYA were compared to the ones of their younger counterparts. Results: Five-year OS and GRFS were lower in AYA: 53.1% versus 64% and 36% versus 47% (p = 0.0012 and p=0.007 respectively). While CIR were similar in both groups, 5 year-Treatment Related Mortality was higher in AYA: 19% versus 13% (p=0.04). The lower GRFS in AYA was mainly explained by a higher chronic Graft versus Host Disease (cGvHD) incidence: 32% versus 19% (p<0.001). Use of Peripheral Blood Stem Cells and use of anti-thymoglobulin appeared to be the main factors impacting cGvHD occurrence in AYA. Conclusion: AYA have worse outcomes than children after HSCT for ALL because of a greater risk of TRM due to cGvHD. HSCT practices should be questioned in this population.
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Simple Summary Childhood acute lymphoblastic leukemia (ALL) has seen significant advances in treatment, yet children classified as high-risk still face challenging outcomes. Traditionally, the severity of ALL was assessed using basic clinical information at diagnosis, but now a deeper understanding of specific biological markers—such as molecular profiles, genetic variations, and immune system characteristics—has become crucial. These markers are not just keys to understanding the disease’s mechanisms, but also indicators of how it may progress and respond to treatment. For instance, the development of drugs like tyrosine kinase inhibitors can be used to target high-risk leukemia with certain genetic mutations. By focusing on the intricacies of high-risk childhood ALL, research is paving the way for more personalized and precise treatments, offering hope for better management of this complex disease. Abstract Childhood acute lymphoblastic leukemia (ALL) has witnessed substantial improvements in prognosis; however, a subset of patients classified as high-risk continues to face higher rates of relapse and increased mortality. While the National Cancer Institute (NCI) criteria have traditionally guided risk stratification based on initial clinical information, recent advances highlight the pivotal role of biological markers in shaping the prognosis of childhood ALL. This review delves into the emerging understanding of high-risk childhood ALL, focusing on molecular, cytogenetic, and immunophenotypic markers. These markers not only contribute to unraveling the underlying mechanisms of the disease, but also shed light on specific clinical patterns that dictate prognosis. The paradigm shift in treatment strategies, exemplified by the success of tyrosine kinase inhibitors in Philadelphia chromosome-positive leukemia, underscores the importance of recognizing and targeting precise risk factors. Through a comprehensive exploration of high-risk childhood ALL characteristics, this review aims to enhance our comprehension of the disease, offering insights into its molecular landscape and clinical intricacies in the hope of contributing to future targeted and tailored therapies.
Chapter
Acute lymphoblastic leukemia (ALL) is the most common pediatric cancer, affecting approximately 2800 children and adolescents in the United States each year (Siegel et al. Cancer J Clin 73(1), 17–48, 2023). Survival has improved from less than 10% a half century ago to nearly 90% today. From the first introduction of single-agent chemotherapy in the 1940s, combination chemotherapy and intensification of post-induction therapy have largely been responsible for advances in the treatment of ALL, as has therapy directed at the central nervous system (CNS). Over time, the stratification of patients by their risk of relapse, such that therapy intensity is tailored to this risk, has been a major contributor to both improvements in survival rates and reductions in toxicity from therapy. Clinical features, leukemia biology, and early response to therapy have emerged as important components of risk stratification. The biology of ALL, key prognostic factors, and treatment approaches will be discussed, with an emphasis on new developments in the treatment of pediatric ALL.
Chapter
Acute lymphoblastic leukemia is a heterogenous disease under the current WHO 2017 classification. The prognosis in certain subgroups of patients is particularly poor with limited treatment options available. Moreover, risk stratification was difficult in some patients due to lack of recurrent genetic aberrations identified. With the advance of research in genomics, we identified some novel genetic subgroups of acute lymphoblastic leukemia with unique biological features and this information is important for disease prognostication. Moreover, targeted therapies are emerging for acute lymphoblastic leukemia with targetable genetic lesions. The findings of novel genomic signatures in acute lymphoblastic leukemia also facilitate deep mechanistic study to reveal leukemogenesis and development of novel therapeutic strategies. The advance of research in genomics further improves the prognosis of acute lymphoblastic leukemia.
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Intrachromosomal amplification of chromosome 21 defines a subtype of high-risk childhood acute lymphoblastic leukemia (iAMP21-ALL) characterized by copy number changes and complex rearrangements of chromosome 21. The genomic basis of iAMP21-ALL and the pathogenic role of the region of amplification of chromosome 21 to leukemogenesis remain incompletely understood. Here, using integrated whole genome and transcriptome sequencing of 124 iAMP21-ALL patients, including rare cases arising in the context of constitutional chromosomal aberrations, we identified subgroups of iAMP21-ALL according to patterns of copy number alteration and structural variation. This large dataset enabled formal delineation of a 7.8 Mb common region of amplification harboring 71 genes, 43 of which are differentially expressed compared to non-iAMP21-ALL cases, and including multiple genes implicated in the pathogenesis of acute leukemia: CHAF1B, DYRK1A, ERG, HMGN1 and RUNX1. Using multimodal single cell genomic profiling, including single cell whole genome sequencing of two cases, we documented clonal heterogeneity and genomic evolution, formally demonstrating that acquisition of the iAMP21-chromosome is an early event that may undergo progressive amplification during disease ontogeny. We show that UV mutational signatures and high mutation load are characteristic secondary genetic features. Although the genomic alterations of chromosome 21 are variable, these integrated genomic analyses and demonstration of an extended common minimal region of amplification broaden the definition of iAMP21-ALL for more precise diagnosis using cytogenetic or genomic methods to inform clinical management.
Chapter
New insights into the molecular biology of childhood leukemias have stimulated numerous advances in diagnostic methods, strategies for risk assessment and the development of novel therapy for genetic subtypes of the diseases. Fully revised and updated, this new edition of Childhood Leukemias provides the most comprehensive, clinically-oriented and authoritative reference dedicated to these diseases. Beginning with an overview of history, cell biology, and pathology, subsequent chapters review approaches in the evaluation and management of specific leukemias, new therapeutic development and the unique pharmacodynamics and pharmacogenetics of individual patients. New chapters include epigenetics of leukemias, leukemias in patients with Down syndrome and leukemia in adolescents and young adults. The final section covers the complications associated with the disease or its treatment and supportive care during and after treatment. Authored by leading experts, this is a 'must-have' for any physician or investigator who deals with leukemias in childhood.
Thesis
p>Acute lymphoblastic leukaemia (ALL) accounts for approximately 3% of all cancers, and leads to more than 4250 deaths a year. The different classes of leukaemia comprise numerous heterogeneous subgroups, which differ in their cellular and molecular characteristics, as well as their response to therapy. Accurate risk stratification is essential for tailoring of therapy, and achieving optimal outcome in contemporary treatment regimes. Based upon clinical features and cytogenetic and molecular diagnostics, the majority of ALL patients are assigned to one of the following prognostically significant subtypes having; ETV6-RUNX1, BCR-ABL1 or TCF3-PBX1 fusions, MLL rearrangements, high hyperdiploidy (HeH) with >50 chromosomes, hypodiploidy or T-ALL. Whilst in leukaemogenesis, and provide diagnostic and prognostic markers, co-operating oncogenic aberrations are often required for the production of a full leukaemic phenotype. A number of additional aberrations have been identified within some cytogenetic subgroups, but the full complement of cooperating abnormalities, and their distribution within ALL subtypes remains to be defined. these genetic abnormalities are important In this study the genomic changes in a total of 94 ALL patients from the ETV6-RUNX1 (n=34), iAMP21 (n=19) and unclassified (n=41) patient subgroups were characterised using cytogenetics, FISH, array comparative genomic hybridisation, molecular copy number counting, mutation analysis, qRT-PCR and targeted gene expression arrays. This approach allowed the identification of a range of large scale and submicroscopic aberrations, targeting multiple known and novel regions, including a number of genes. The elucidation of pathways and genes dysregulated in these malignant subgroups has provided further insight into the underlying cause of the disease phenotype. The PDE9A and TBL1XR1 genes were implicated in the pathogenesis of iAMP21 and ETV6-RUNX1 patients, respectively. Additionally, the potential prognostic significance of the ADD3 gene in ETV6-RUNX1 positive ALL was revealed.</p
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We describe the clinical and laboratory findings of 78 adult patients with T-prolymphocytic leukemia (T-PLL) studied over the last 12 years. The main disease features were splenomegaly (73%), lymphadenopathy (53%), hepatomegaly (40%), skin lesions (27%), and a high leukocyte count (greater than 100 x 10(9)/L in 75%) with nucleolated prolymphocytes. A variant form with small, less typical cells was recognized in 19%. Membrane markers defined a postthymic phenotype TdT-, CD2+, CD3+, CD5+, CD7+; in 65%, the cells were CD4+ CD8-, in 21%, they coexpressed CD4 and CD8, and, in 13%, they were CD4- CD8+. Serology for human T-cell leukemia/lymphoma virus Type-I (HTLV-I) was negative in the 27 cases investigated. Cytogenetic analysis in 30 cases showed a consistent abnormality of chromosome 14, usually inv (14), with breakpoints at q11 and q32 in 76% of cases. Trisomy 8, including iso8q, was shown in 53%; t (11;14)(q13;q32) was documented in one case; and one had a normal karyotype. The clinical course was progressive with a median survival of 7.5 months. Thirty-one patients were treated with 2' deoxycoformycin and 15 responded (3 complete remissions and 12 partial remissions); the response rate (48%) increased to 58% in patients with a CD4+ CD8- phenotype. The median survival of responders was 16 months and of nonresponders 10 months; other treatments were less effective. T-PLL is a distinct clinico-pathologic entity with aggressive course and characteristic chromosome abnormalities. A subgroup of patients may benefit from deoxycoformycin.
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Full-text available
T-prolymphocytic leukaemia (T-PLL) is a rare, sporadic leukaemia similar to a mature T-cell leukaemia seen in some patients with Ataxia Telangiectasia (A-T), a recessive multisystem disorder caused by mutations of the ATM gene at chromosome 11q23. ATM sequence mutations have been reported in 46% of T-PLL cases, but some cases also have karyotypic abnormalities at 11q, including 11q23. This led us to investigate the structure of the ATM locus in a panel of eight cases, two of which had 11q23 abnormalities. As expected, nucleotide changes were detected in some samples. Two remission samples were wild type. To test for structural lesions, DNA fibres were hybridized with a contig of four labelled cosmids spanning the ATM locus. In all samples there were structural lesions and in four samples both alleles were affected. This provides strong evidence for our suggestion that ATM acts as a tumour suppressor during T-PLL tumorigenesis. Some additional role for ATM during T-PLL tumorigenesis is possible since nucleotide changes were present in addition to structural lesions disrupting both alleles. The mechanism of inactivation appeared to be unusual because multiple structural lesions on one allele were often observed.
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The family of cytokines signalling through the common receptor subunit gp130 comprises interleukin (IL)-6, IL-11, leukaemia inhibitory factor, oncostatin M, ciliary neurotrophic factor and cardiotrophin-1. These so-called IL-6-type cytokines play an important role in the regulation of complex cellular processes such as gene activation, proliferation and differentiation. The current knowledge on the signal-transduction mechanisms of these cytokines from the plasma membrane to the nucleus is reviewed. In particular, we focus on the assembly of receptor complexes after ligand binding, the activation of receptor-associated kinases of the Janus family, and the recruitment and phosphorylation of transcription factors of the STAT family, which dimerize, translocate to the nucleus, and bind to enhancer elements of respective target genes leading to transcriptional activation. The important players in the signalling pathway, namely the cytokines and the receptor components, the Janus kinases Jak1, Jak2 and Tyk2, the signal transducers and activators of transcription STAT1 and STAT3 and the tyrosine phosphatase SHP2 [SH2 (Src homology 2) domain-containing tyrosine phosphatase] are introduced and their structural/functional properties are discussed. Furthermore, we review various mechanisms involved in the termination of the IL-6-type cytokine signalling, namely the action of tyrosine phosphatases, proteasome, Jak kinase inhibitors SOCS (suppressor of cytokine signalling), protein inhibitors of activated STATs (PIAS), and internalization of the cytokine receptors via gp130. Although all IL-6-type cytokines signal through the gp130/Jak/STAT pathway, the comparison of their physiological properties shows that they elicit not only similar, but also distinct, biological responses. This is reflected in the different phenotypes of IL-6-type-cytokine knock-out animals.
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We previously found a high-level amplification in chromosomal region 21q22 in two children with acute lymphoblastic leukemia (ALL) using comparative genomic hybridization. The same region harbors the AML1 gene. The aim of the present study was to investigate whether AML1 is a target gene in these amplifications. Bone marrow samples were obtained from 112 childhood ALL patients. The copy number of AML1 was studied using fluorescent in situ hybridization with a dual color DNA probe specific for the AML1 and TEL genes. Three of the patients had 3-to-8 fold amplification of AML1 and showed a high-level amplification of 21q22 by comparative genomic hybridization. In two of them the extra copies were shown to be located tandemly in a derivative of chromosome 21. Thirty-seven of the patients (33%) had 1-to-2 extra copies of AML1, most probably reflecting the incidence of trisomy 21 and tetrasomy 21. The TEL-AML1 fusion was less frequent in the patients with extra copies of AML1 (7/40; 18%) than in the patients with no extra copy (24/72; 33%). None of the three patients with 3-to-8 fold amplification of AML1 showed the fusion or loss of TEL. Our findings suggest that the AML1 gene is a target gene in the 21q22 amplicon in childhood ALL. To understand the role, if any, of the AML1 amplification in leukemogenesis, further studies are needed.
Article
We describe the clinical and laboratory findings of 78 adult patients with T-prolymphocytic leukemia (T-PLL) studied over the last 12 years. The main disease features were splenomegaly (73%), lymphadenopathy (53%), hepatomegaly (40%), skin lesions (27%), and a high leukocyte count (greater than 100 x 10(9)/L in 75%) with nucleolated prolymphocytes. A variant form with small, less typical cells was recognized in 19%. Membrane markers defined a postthymic phenotype TdT- , CD2+, CD3+, CD5+, CD7+; in 65%, the cells were CD4+ CD8-, in 21%, they coexpressed CD4 and CD8, and, in 13%, they were CD4- CD8+. Serology for human T-cell leukemia/lymphoma virus Type-I (HTLV-I) was negative in the 27 cases investigated. Cytogenetic analysis in 30 cases showed a consistent abnormality of chromosome 14, usually inv (14), with breakpoints at q11 and q32 in 76% of cases. Trisomy 8, including iso8q, was shown in 53%; t (11;14)(q13;q32) was documented in one case; and one had a normal karyotype. The clinical course was progressive with a median survival of 7.5 months. Thirty-one patients were treated with 2′ deoxycoformycin and 15 responded (3 complete remissions and 12 partial remissions); the response rate (48%) increased to 58% in patients with a CD4+ CD8- phenotype. The median survival of responders was 16 months and of nonresponders 10 months; other treatments were less effective. T-PLL is a distinct clinico-pathologic entity with aggressive course and characteristic chromosome abnormalities. A subgroup of patients may benefit from deoxycoformycin.
Article
The morphology of the cells from 29 cases of T-prolymphocytic leukaemia (T-PLL) was studied by light (LM) and transmission electron microscopy (TEM) and was compared with that of 33 B-cell PLL. The membrane phenotype of T-PLL cells was T4+, T8- in two-thirds of the cases, others being T4- T8+ or T4+ T8+. Two morphological types of T-PLL were defined according to the nuclear features: regular (55% of cases) and irregular (45% of cases). T-PLL cells with a regular, round or oval, nuclear outline resembled B-PLL cells but had less abundant cytoplasm and a higher nucleo-cytoplasmic ratio. Irregular T-prolymphocytes displayed a distinct convoluted nucleus. A 'small-cell' variant of T-PLL was recognized by TEM in six cases in which the diagnosis was uncertain by LM. A characteristic of all types of T-prolymphocytes by LM was the presence of a deep basophilic cytoplasm which by TEM corresponded to clusters of ribosomes and endoplasmic reticulum. No differences in clinico-haematological features or membrane markers were apparent between the morphological types of T-PLL, although it was noted that the three T4- T8+ cases had irregular cells and four of the small cell variant were T3- T4+. TEM permits a more precise assessment of the cytoplasmic organelles and nucleolus than LM analysis and facilitates the distinction between T-PLL and other leukaemias with a mature T-cell phenotype, namely adult T-cell leukaemia/lymphoma. Sezary syndrome and T-chronic lymphocytic leukaemia.
Article
Eleven patients with chronic lymphocytic leukaemia of T-cell origin are reported. The identification of the leukaemic cells was performed with seven different membrane markers for either T or B lymphocytes. The reactivity of the leukaemic T cells with three different heteroantisera to T cells differed from patient to patient but was homogeneous in individual cases. This finding suggests that the leukaemic lymphocytes belonged to a single subset of T cells. These lymphocytes responded to allogeneic cells in some of these patients. In contrast, stimulation by non-specific mitogens was poor in most patients. Two patients were affected with the prolymphocytic type of chronic lymphocytic leukaemia, but a characteristic clinical and haematological pattern was found in nine patients. The blood and marrow infiltration was moderate and the proliferating T lymphocytes had a high content of lysosomal enymes in all patients and cytoplasmic granules in six cases. Other unusual features included massive splenomegaly (five patients), skin lesions (four patients), and major neutropenia (four patients).
Article
Neoplastic cells simultaneously harbor widespread genomic hypomethylation, more regional areas of hypermethylation, and increased DNA-methyltransferase (DNA-MTase) activity. Each component of this "methylation imbalance" may fundamentally contribute to tumor progression. The precise role of the hypomethylation is unclear, but this change may well be involved in the widespread chromosomal alterations in tumor cells. A main target of the regional hypermethylation are normally unmethylated CpG islands located in gene promoter regions. This hypermethylation correlates with transcriptional repression that can serve as an alternative to coding region mutations for inactivation of tumor suppressor genes, including p16, p15, VHL, and E-cad. Each gene can be partially reactivated by demethylation, and the selective advantage for loss of gene function is identical to that seen for loss by classic mutations. How abnormal methylation, in general, and hypermethylation, in particular, evolve during tumorigenesis are just beginning to be defined. Normally, unmethylated CpG islands appear protected from dense methylation affecting immediate flanking regions. In neoplastic cells, this protection is lost, possibly by chronic exposure to increased DNA-MTase activity and/or disruption of local protective mechanisms. Hypermethylation of some genes appears to occur only after onset of neoplastic evolution, whereas others, including the estrogen receptor, become hypermethylated in normal cells during aging. This latter change may predispose to neoplasia because tumors frequently are hypermethylated for these same genes. A model is proposed wherein tumor progression results from episodic clonal expansion of heterogeneous cell populations driven by continuous interaction between these methylation abnormalities and classic genetic changes.