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Optical diagnosis of laryngeal cancer using high wavenumber Raman spectroscopy

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We report the implementation of the transnasal image-guided high wavenumber (HW) Raman spectroscopy to differentiate tumor from normal laryngeal tissue at endoscopy. A rapid-acquisition Raman spectroscopy system coupled with a miniaturized fiber-optic Raman probe was utilized to realize real-time HW Raman (2800-3020 cm(-1)) measurements in the larynx. A total of 94 HW Raman spectra (22 normal sites, 72 tumor sites) were acquired from 39 patients who underwent laryngoscopic screening. Significant differences in Raman intensities of prominent Raman bands at 2845, 2880 and 2920 cm(-1) (CH(2) stretching of lipids), and 2940 cm(-1) (CH(3) stretching of proteins) were observed between normal and cancer laryngeal tissue. The diagnostic algorithms based on principal components analysis (PCA) and linear discriminant analysis (LDA) together with the leave-one subject-out, cross-validation method on HW Raman spectra yielded a diagnostic sensitivity of 90.3% (65/72) and specificity of 90.9% (20/22) for laryngeal cancer identification. This study demonstrates that HW Raman spectroscopy has the potential for the noninvasive, real-time diagnosis and detection of laryngeal cancer at the molecular level.
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Biosensors
and
Bioelectronics
35 (2012) 213–
217
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and
Bioelectronics
j
our
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l
ho
me
page:
www.elsevier.com/locate/bios
Optical
diagnosis
of
laryngeal
cancer
using
high
wavenumber
Raman
spectroscopy
Kan
Lina,
David
Lau
Pang
Chengb,
Zhiwei
Huanga,
aOptical
Bioimaging
Laboratory,
Department
of
Bioengineering,
Faculty
of
Engineering,
National
University
of
Singapore,
Singapore
117576,
Singapore
bDepartment
of
Otolaryngology,
Singapore
General
Hospital,
Singapore
169608,
Singapore
a
r
t
i
c
l
e
i
n
f
o
Article
history:
Received
26
December
2011
Received
in
revised
form
21
February
2012
Accepted
23
February
2012
Available online 15 March 2012
Keywords:
High
wavenumber
Raman
spectroscopy
Laryngeal
cancer
Optical
diagnosis
a
b
s
t
r
a
c
t
We
report
the
implementation
of
the
transnasal
image-guided
high
wavenumber
(HW)
Raman
spec-
troscopy
to
differentiate
tumor
from
normal
laryngeal
tissue
at
endoscopy.
A
rapid-acquisition
Raman
spectroscopy
system
coupled
with
a
miniaturized
fiber-optic
Raman
probe
was
utilized
to
realize
real-
time
HW
Raman
(2800–3020
cm1)
measurements
in
the
larynx.
A
total
of
94
HW
Raman
spectra
(22
normal
sites,
72
tumor
sites)
were
acquired
from
39
patients
who
underwent
laryngoscopic
screening.
Significant
differences
in
Raman
intensities
of
prominent
Raman
bands
at
2845,
2880
and
2920
cm1
(CH2stretching
of
lipids),
and
2940
cm1(CH3stretching
of
proteins)
were
observed
between
normal
and
cancer
laryngeal
tissue.
The
diagnostic
algorithms
based
on
principal
components
analysis
(PCA)
and
linear
discriminant
analysis
(LDA)
together
with
the
leave-one
subject-out,
cross-validation
method
on
HW
Raman
spectra
yielded
a
diagnostic
sensitivity
of
90.3%
(65/72)
and
specificity
of
90.9%
(20/22)
for
laryngeal
cancer
identification.
This
study
demonstrates
that
HW
Raman
spectroscopy
has
the
potential
for
the
noninvasive,
real-time
diagnosis
and
detection
of
laryngeal
cancer
at
the
molecular
level.
© 2012 Elsevier B.V. All rights reserved.
1.
Introduction
Laryngeal
cancer
is
one
of
the
most
common
malignancies
in
humans
worldwide
due
to
its
high
incidence
rate
and
mortality
(Chu
and
Kim,
2008).
For
instance,
in
Southeast
Asia,
the
rates
of
incidence
and
mortality
of
laryngeal
cancer
are
significantly
higher
than
other
areas
of
the
world
(Cao
et
al.,
2007;
Döbróssy,
2005).
Early
cancer
diagnosis
in
the
larynx
with
effective
treatment
(e.g.,
surgery,
radiotherapy
or
chemotherapy
alone
or
in
combi-
nation)
is
crucial
to
improving
the
5-year
survival
rate
(Chu
and
Kim,
2008;
Lee
et
al.,
2008).
Positive
endoscopic
biopsy
currently
is
the
gold
standard
for
cancer
diagnosis,
but
it
is
invasive
and
impractical
for
screening
high
risk
patients,
which
might
affect
the
quality
of
the
voice
due
to
multiple
biopsies
(Lee
et
al.,
2008).
Fiber-
optic
laryngoscopy
is
the
primary
physical
examination
tool
for
now
(Chu
and
Kim,
2008),
which
relies
on
white-light
illumina-
tion
while
requires
highly
experienced
skills
of
recognization
and
locating
pathologic
tissues
(Beser
et
al.,
2009).
Raman
spectroscopy
is
a
unique
vibrational
technique
capable
of
probing
biomolecular
changes
in
tissue,
which
has
shown
great
promise
for
early
diag-
nosis
and
detection
of
precancer
and
cancer
diagnosis
in
a
variety
Corresponding
author
at:
Optical
Bioimaging
Laboratory,
Department
of
Bio-
engineering,
Faculty
of
Engineering,
National
University
of
Singapore,
9
Engineering
Drive
1,
Singapore
117576,
Singapore.
Tel.:
+65
6516
8856;
fax:
+65
6872
3069.
E-mail
address:
biehzw@nus.edu.sg
(Z.
Huang).
of
organs
(e.g.,
skin,
cervix,
lung,
esophagus,
stomach,
colon,
kid-
ney,
bladder,
breast,
nasopharynx
and
the
larynx)
(Nijssen
et
al.,
2002;
Stone
et
al.,
2000;
Lau
et
al.,
2003,
2005;
Almond
et
al.,
2011;
Bergholt
et
al.,
2011a,b;
Draga
et
al.,
2010;
Gniadecka
et
al.,
2004;
Haka
et
al.,
2006;
Hale
et
al.,
2009;
Huang
et
al.,
2003,
2005;
Mo
et
al.,
2009;
Kanter
et
al.,
2009;
Magee
et
al.,
2009;
Short
et
al.,
2006;
Teh
et
al.,
2008,
2009a;
Widjaja
et
al.,
2008;
Mahadevan-
Jansen
and
Richards-Kortum,
1996;
Wong
Kee
Song
et
al.,
2005;
Shim
et
al.,
2000).
Current
Raman
research
in
diagnosing
laryngeal
cancer
is
mostly
focused
on
the
so-called
fingerprint
region
(i.e.,
800–1800
cm1)
that
contains
rich
biochemical
information
about
the
tissue
(Stone
et
al.,
2000;
Mahadevan-Jansen
and
Richards-
Kortum,
1996;
Lau
et
al.,
2003,
2005;
Teh
et
al.,
2009b).
However,
the
strong
fluorescence
background
and
Raman
signals
attributed
to
the
silica
fiber
severely
interfere
with
the
detection
of
the
inher-
ently
weak
tissue
Raman
signal,
leading
to
a
complex
fiber
probe
filtering
design
as
well
as
signal
analysis
in
the
fingerprint
region.
On
the
other
hand,
the
high
wavenumber
(HW)
(2800–3800
cm1)
Raman
spectroscopy
can
also
provide
complementary
biochemical
information
for
tissue
diagnosis
and
characterization
with
much
stronger
tissue
Raman
signals
but
reduced
tissue/fiber
fluorescence
background
(Koljenovic
et
al.,
2005;
Nijssen
et
al.,
2007;
Mo
et
al.,
2009),
as
compared
to
the
fingerprint
Raman
spectroscopy.
To
date,
HW
Raman
spectroscopy
for
laryngeal
tissue
diagnosis
and
characterization
has
yet
been
reported
in
literature.
In
this
work,
we
study
the
implementation
of
the
transnasal
image-guided
HW
Raman
spectroscopy
developed
to
differentiate
tumor
from
normal
0956-5663/$
see
front
matter ©
2012 Elsevier B.V. All rights reserved.
doi:10.1016/j.bios.2012.02.050
Author's personal copy
214 K.
Lin
et
al.
/
Biosensors
and
Bioelectronics
35 (2012) 213–
217
laryngeal
tissue.
A
rapid-acquisition
Raman
spectroscopy
system
coupled
with
a
miniaturized
fiber-optic
Raman
probe
was
utilized
to
realize
real-time
HW
Raman
(2800–3020
cm1)
measurements
in
the
larynx.
Multivariate
statistical
techniques,
including
prin-
cipal
components
analysis
(PCA)
and
linear
discriminant
analysis
(LDA),
are
utilized
to
develop
diagnostic
algorithms
for
differentia-
tion
between
normal
and
cancerous
laryngeal
tissue.
The
receiver
operating
characteristic
(ROC)
curve
is
also
conducted
to
further
evaluate
the
performance
of
PCA–LDA
algorithms
on
HW
Raman
spectroscopy
for
laryngeal
cancer
diagnosis.
2.
Materials
and
methods
2.1.
Raman
endoscopic
instrumentation
Fig.
1
shows
the
schematic
diagram
of
the
image-guided
Raman
spectroscopy
developed
for
tissue
measurements
and
characteriza-
tion
(Huang
et
al.,
2009).
Briefly,
the
Raman
spectroscopy
system
consists
of
a
spectrum
stabilized
785
nm
diode
laser
(maximum
output:
300
mW,
B&W
TEK
Inc.,
Newark,
DE),
a
transmissive
imaging
spectrograph
(Holospec
f/1.8,
Kaiser
Optical
Systems)
equipped
with
a
liquid
nitrogen
cooled
(120 C),
NIR-optimized,
back-illuminated
and
deep
depletion
charge-coupled
device
(CCD)
camera
(1340
×400
pixels
at
20
!m
×
20
!m
per
pixel;
Spec-10:
400BR/LN,
Princeton
Instruments).
We
have
constructed
a
1.8
mm
fiber-optic
Raman
endoscopic
probe
with
dual
coatings
on
the
fiber
tip
for
optimizing
both
the
tissue
excitation
and
Raman
col-
lections
(Huang
et
al.,
2009).
The
785
nm
laser
is
coupled
into
the
central
delivery
fiber
(200
!m,
NA
=
0.22)
of
the
Raman
probe
for
tissue
excitation,
while
the
backscattered
tissue
Raman
pho-
tons
from
the
laryngeal
tissue
are
collected
by
the
surrounding
fibers
(32
!m
×
200
!m,
NA
=
0.22).
The
Raman
fiber
probe
fits
into
the
instrument
channel
of
laryngoscope
and
can
be
safely
tar-
geted
to
different
locations
in
the
larynx
under
the
multimodal
wide-field
imaging
(i.e.,
white-light
reflectance
(WLR)
and
narrow-
band
imaging
(NBI))
guidance.
The
system
acquires
HW
Raman
spectra
over
the
range
of
2800–3020
cm1,
and
each
raw
spec-
trum
is
acquired
within
1
s
with
light
irradiance
of
1.5
W/cm2.
The
spectral
resolution
of
the
system
is
about
9
cm1,
and
all
wavelength-calibrated
HW
Raman
spectra
are
also
corrected
for
the
wavelength-dependence
of
the
system
using
a
standard
lamp
(RS-
10,
EG&G
Gamma
Scientific,
San
Diego,
CA).
HW
Raman
spectra
are
then
extracted
from
the
raw
tissue
spectra
using
established
pre-
processing
methods
including
smoothing,
baseline
subtraction,
etc.
(Bergholt
et
al.,
2011a).
All
the
spectral
pre-processing
is
completed
on-line,
and
the
Raman
spectra
and
the
outcome
of
decision
algo-
rithms
can
be
displayed
in
real-time
in
a
comprehensible
graphical
user
interface
(GUI)
during
clinical
transnasal
Raman
endoscopy.
2.2.
Subjects
This
study
was
approved
by
the
SingHealth
Centralized
Institu-
tional
Review
Board
(IRB),
Singapore.
A
total
of
39
different
patients
with
a
mean
age
of
60
who
underwent
surgical
resection
due
to
laryngeal
malignancies
were
recruited
for
this
study.
All
patients
preoperatively
signed
an
informed
consent
permitting
Raman
mea-
surements
on
laryngeal
tissue.
HW
Raman
spectra
were
directly
acquired
from
the
suspicious
lesion
sites
for
each
patient
through
gently
placing
the
fiber-optic
Raman
probe
on
the
tissue
with
sig-
nal
acquisition
time
of
<1
s.
HW
Raman
spectra
were
also
measured
from
the
surrounding
normal
sites
that
appear
completely
normal
in
the
laryngoscopist’s
opinion
(i.e.,
normal
tissue
does
not
exhibit
colored
patterned
changes
that
only
accompany
precursor
lesions)
(Arens
et
al.,
2004),
but
no
biopsies
were
taken
from
normal
appear-
ing
tissue.
Only
highly
abnormal
sites
measured
were
biopsied
and
then
submitted
for
histopathologic
examination.
A
total
of
94
Raman
spectra
(22
normal,
72
tumor
as
confirmed
by
histopathol-
ogy)
from
different
tissue
sites
were
collected.
For
the
assessment
of
diagnostic
sensitivity
and
specificity
of
Raman
endoscopy
for
tissue
classification,
histopathological
results
served
as
the
gold
standard.
2.3.
Data
preprocessing
All
raw
spectral
data
were
processed
on-line
with
software
developed
in
the
Matlab
environment
(The
MathWorks,
Inc.,
Nat-
ick,
MA)
(Bergholt
et
al.,
2011a).
Raw
spectra
are
first
pre-processed
by
a
first-order
Savitsky–Golay
filter
to
reduce
background
noise
(Savitzky
and
Golay,
1964).
A
first-order
polynomial
was
used
to
fit
tissue
autofluorescence
background
and
then
subtracted
from
the
raw
spectra
to
obtain
the
pure
HW
Raman
spectra.
The
HW
Raman
spectra
are
then
normalized
over
the
integrated
area
under
the
curve
from
2800
to
3020
cm1to
allow
a
better
comparison
of
the
spectral
shapes
and
relative
Raman
band
intensities
among
different
subjects/tissue
sites
(Huang
et
al.,
2003).
2.4.
Multivariate
statistical
analysis
Principal
components
analysis
(PCA)
was
used
to
reduce
dimen-
sionality
of
the
Raman
data
(each
Raman
spectrum
ranging
from
2800
to
3020
cm1with
set
of
255
intensities),
retaining
the
most
diagnostically
significant
information
for
effective
tissue
classifica-
tion.
The
spectra
were
first
standardized
to
ensure
that
mean
of
the
spectra
was
zero
and
the
standard
deviation
(SD)
was
one,
eliminat-
ing
the
influence
of
inter-
and/or
intra-subject
spectral
variability
on
PCA.
Mean
centering
ensured
that
the
principal
components
(PCs)
form
an
orthogonal
basis
(Devore,
2009;
Lachenbruch
and
Mickey,
1968).
Thus,
PCA
were
employed
to
extract
a
set
of
orthog-
onal
PCs
comprising
loadings
and
scores
that
accounted
for
most
of
the
total
variance
in
original
spectra.
Each
loading
vector
is
related
to
the
original
spectrum
by
a
variable
called
the
PC
score,
which
rep-
resents
the
weight
of
that
particular
component
against
the
basis
spectrum.
The
most
diagnostically
significant
PCs
(p
<
0.05)
were
determined
by
Student’s
t-test
(Devore,
2009)
and
then
selected
as
input
for
the
development
of
linear
discriminant
analysis
algo-
rithms
for
classification.
LDA
determines
the
discriminant
function
that
maximizes
the
variances
in
the
dataset
between
groups
while
minimizing
the
variances
between
members
of
the
same
group.
The
performance
of
the
diagnostic
algorithms
rendered
by
the
PCA–LDA
models
for
correctly
predicting
the
tissue
groups
(e.g.,
normal
vs.
cancer)
was
estimated
in
an
unbiased
manner
using
the
leave-
one
subject-out,
cross-validation
method
(Dillon
and
Goldstein,
1984;
Lachenbruch
and
Mickey,
1968)
on
all
model
spectra.
In
this
method,
the
spectra
from
each
same
patient
were
held
out
from
the
data
set
and
the
PCA–LDA
modeling
was
redeveloped
using
the
remaining
HW
Raman
spectra.
The
redeveloped
PCA–LDA
diag-
nostic
algorithm
was
then
used
to
classify
the
withheld
spectra.
This
process
was
repeated
until
all
withheld
spectra
were
classi-
fied.
Receiver
operating
characteristic
(ROC)
curves
were
generated
by
successively
changing
the
thresholds
to
determine
correct
and
incorrect
classifications
for
all
tissues.
Multivariate
statistical
anal-
ysis
was
performed
online
using
in-house
written
scripts
in
the
Matlab
(Mathworks
Inc.,
Natick,
MA)
programming
environment
(Bergholt
et
al.,
2011a).
3.
Results
Fig.
2A
shows
the
comparison
of
mean
HW
Raman
spectra
±1
SD
of
normal
(n
=
22)
and
cancer
(n
=
72)
laryngeal
tissue.
Prominent
Raman
bands
such
as
2845,
2880,
and
2920
cm1(CH2stretch-
ing
of
lipids),
and
2940
cm1(CH3stretching
of
proteins)
(Eikje
et
al.,
2005;
Mo
et
al.,
2009;
Santos
et
al.,
2005)
are
found
in
both
Author's personal copy
K.
Lin
et
al.
/
Biosensors
and
Bioelectronics
35 (2012) 213–
217 215
Fig.
1.
Schematic
of
the
integrated
Raman
spectroscopy
and
trimodal
endoscopic
imaging
system
developed
for
in
vivo
tissue
Raman
measurements.
normal
and
tumor
laryngeal
tissues.
As
shown
in
the
difference
spectrum
(Fig.
2B),
the
intensities
of
Raman
band
between
2810
and
2900
cm1in
cancer
tissue
is
obviously
greater
than
normal
tissue,
while
the
Raman
band
between
2900
and
3020
cm1the
normal
is
higher.
This
suggests
that
there
is
an
increase
or
decrease
in
particular
types
of
biomolecules
relative
to
the
total
Raman-
active
biomolecules
in
cancer
tissue
as
compared
to
normal
tissue,
demonstrating
the
potential
role
of
HW
Raman
spectroscopy
for
cancer
diagnosis
in
the
larynx.
To
determine
the
most
significant
Raman
features
for
tissue
analysis
and
classification,
the
multivariate
statistical
technique
(e.g.,
PCA–LDA)
coupled
with
Student’s
t-test
are
performed
by
incorporating
the
entire
HW
Raman
spectra.
Fig.
3
shows
the
first
five
dominant
principal
components
(PCs)
accounting
for
about
99.2%
(PC1:
89.1%;
PC2:
7.41%;
PC3:
1.52%;
PC4:
1.08%;
PC5:
0.07%)
of
the
total
variance
calculated
from
HW
Raman
spectra
of
laryngeal
tissues.
Overall,
the
PC
features
among
different
PCs
are
different,
but
some
PC
features
roughly
correspond
to
HW
Raman
spectra,
with
peaks
and
troughs
at
positions
(e.g.,
CH2stretch
band
(lipids)
near
2845
cm1,
2880
cm1,
2920
cm1and
CH3stretch
band
(pro-
teins)
near
2940
cm1)
similar
to
those
of
tissue
HW
Raman
spectra.
The
first
PC
accounts
for
the
largest
variance
within
the
spectral
data
sets
(e.g.,
89.1%),
whereas
successive
PCs
describe
features
that
contribute
progressively
smaller
variances.
Unpaired
two-sided
Fig.
2.
(A)
Comparison
of
the
mean
HW
Raman
spectra
±1
standard
deviations
(SD)
of
normal
(n
=
22)
and
cancer
(n
=
72)
laryngeal
tissue.
(B)
Difference
spectrum
±1
SD
between
cancer
(n
=
72)
and
normal
laryngeal
tissue
(n
=
22).
Note
that
the
mean
normalized
HW
Raman
spectrum
of
normal
tissue
was
shifted
vertically
for
better
visualization
(panel
A);
the
shaded
areas
indicate
the
respective
standard
deviations.
The
picture
shown
is
the
Raman
acquisitions
from
the
larynx
using
endoscopic
fiber-optic
Raman
probe.
Author's personal copy
216 K.
Lin
et
al.
/
Biosensors
and
Bioelectronics
35 (2012) 213–
217
302030002980296029402920290028802860284028202800
PC5
PC4
PC3
PC2
Loading of PCs
Raman shift(cm-1
)
PC1
Fig.
3.
The
first
five
principal
components
(PCs)
accounting
for
about
99.2%
of
the
total
variance
calculated
from
HW
Raman
spectra
of
laryngeal
tissue
(PC1
=
89.1%;
PC2
=
7.41%;
PC3
=
1.52%;
PC4
=
1.08%;
PC5
=
0.07%).
Student’s
t-tests
on
the
first
five
PCs
show
that
only
three
PCs
(PC1,
PC2
and
PC3,
p
<
0.05)
are
diagnostically
significant.
To
develop
effective
diagnostic
algorithms
for
tissue
classifi-
cation,
the
three
diagnostically
significant
PCs
are
fed
into
the
LDA
model
together
with
leave-one
subject-out,
cross-validation
technique
for
tissue
classification.
PCA–LDA
algorithms
on
the
HW
tissue
Raman
data
provide
the
diagnostic
sensitivity
of
90.3%
(65/72)
and
specificity
of
90.9%
(20/22)
for
laryngeal
cancer
identifi-
cation
(Fig.
4).
In
addition,
the
ROC
curve
(Fig.
5)
was
also
generated
from
the
posterior
probability
plot
in
Fig.
4
at
different
threshold
levels,
displaying
the
performance
of
PCA–LDA-based
diagnostic
algorithms
derived
for
laryngeal
cancer
detection.
The
integration
area
under
the
ROC
curve
is
0.97,
further
confirming
that
HW
Raman
technique
coupled
with
PCA–LDA-based
diagnostic
algo-
rithms
is
robust
for
laryngeal
cancer
diagnosis.
4.
Discussion
Raman
spectroscopy
holds
a
great
promise
for
clinical
appli-
cation,
as
it
can
be
used
as
a
non-invasive
technique
for
early
1009080706050403020100
0.00
0.25
0.50
0.75
1.00
Cancer (n=72)
Normal (n=22)
Site Number
Posterior Probablity
Fig.
4.
Scatter
plot
of
the
posterior
probability
belonging
to
normal
and
can-
cer
categories
using
the
PCA–LDA
method
together
with
leave-one
subject-out,
cross-validation
method.
The
algorithm
yields
a
diagnostic
sensitivity
of
90.3%
and
specificity
of
90.9%
for
differentiation
between
normal
and
tumor
tissues.
1.00.80.60.40.20.0
0.0
0.2
0.4
0.6
0.8
1.0
Sensitivity
1 - Specificity
Fig.
5.
ROC
curve
of
discrimination
results
for
HW
Raman
spectra
utilizing
the
PCA–LDA-based
spectral
classification
with
leave-one
subject-out,
cross
validation.
The
integration
area
under
the
ROC
curves
is
0.97
for
PCA–LDA-based
diagnostic
algorithm.
detection
of
biomolecular
changes
associated
with
tissue
pathol-
ogy.
Our
study
demonstrates
that
HW
Raman
technique
is
capable
of
generating
spectral
differences
between
normal
and
cancer
tis-
sue
in
the
larynx
as
shown
in
Fig.
2.
The
empirical
analysis
based
on
the
intensity
ratio
measurements,
which
relate
to
the
changes
in
protein-to-lipid
contents,
has
already
been
reported
in
liter-
ature
(Huang
et
al.,
2003;
Short
et
al.,
2005).
Student’s
t-test
(p
<
0.0001)
is
used
to
test
the
significant
difference
of
Raman
inten-
sity
ratios
of
normal
and
cancer
tissues.
Intensity
at
2920
cm1and
2940
cm1is
higher
in
normal
tissues,
while
at
2845
and
2890
cm1
are
higher
in
cancer
tissues.
The
three
significant
Raman
peak
intensity
ratios
of
I2940/I2845 ,
I2940/I2890 and
I2940/I2920 correlated
with
their
histopathologic
findings
were
also
evaluated,
and
the
decision
lines
(i.e.,
diagnostic
algorithms)
separated
cancer
from
normal
tissues
with
a
sensitivity
of
72.2%
(52/72),
45.8%
(33/72)
and
44.4%
(32/72),
while
a
sensitivity
of
81.8%
(18/22),
72.7%
(16/22)
and
63.6%
(14/22),
respectively,
for
laryngeal
cancer
identification.
These
indicate
that
different
ratios
of
Raman
band
intensities
only
give
a
certain
levels
of
accuracy
for
tissue
classification.
The
Raman
intensity
ratios
of
I2940/I2845 and
I2940/I2890 are
both
lower
for
can-
cer
tissue,
this
may
be
due
to
the
decrease
in
content
of
collagen.
In
cancer
progression,
from
genetic
mutation
to
invasive
cancer
in
the
laryngeal,
the
epithelium
turns
thicker
and
thus
obstructs
the
colla-
gen
Raman
emission
from
deep
collagen
basal
membrane,
thereby
decreases
the
overall
ratio
of
I2940/I2845 in
laryngeal
cancer
tissue
(Teh
et
al.,
2008).
Besides,
the
contribution
of
collagen
in
cancer
tis-
sue
should
be
reduced
due
to
proliferation
of
cancerous
cells
and
express
as
a
class
of
metalloportease,
which
in
turn
decrease
the
content
of
collagen
level.
Raman
band
at
2845
cm1is
tentatively
ascribed
to
CH2lipids
and
it
seems
to
correspond
to
Raman
peak
at
1450
cm1in
the
fingerprint
region,
which
is
assigned
to
CH2pro-
tein/lipids.
CH2protein/lipids
are
found
to
be
higher
in
cancer
than
in
normal
laryngeal
tissues,
which
can
be
explained
by
the
increase
of
mitotic
activity
in
the
nucleus
(Stone
et
al.,
2000;
Haka
et
al.,
2006;
Mo
et
al.,
2009;
Teh
et
al.,
2008,
2009b).
The
distinctive
differ-
ences
in
HW
Raman
spectra
between
normal
and
cancer
laryngeal
tissues
reinforce
that
HW
Raman
spectroscopy
can
be
used
to
reveal
molecular
changes
associated
with
carcinogenesis
progression.
Considering
the
complexity
of
biological
tissue,
multivariate
sta-
tistical
analysis
(PCA–LDA)
which
incorporates
the
entire
Raman
spectra
data
for
analysis
is
more
robust
and
rigorous
to
differenti-
ate
spectra
that
represent
either
normal
or
cancer
tissue.
Compared
Author's personal copy
K.
Lin
et
al.
/
Biosensors
and
Bioelectronics
35 (2012) 213–
217 217
with
intensity
ratio
approach,
there
is
a
great
improvement
in
diagnostic
sensitivity
(25%)
and
specificity
(11%)
of
PCA–LDA
algorithms
(Fig.
4).
The
ROC
curve
(Fig.
5)
of
PCA–LDA
model-
ing
(AUC
=
0.97)
further
verifies
a
better
diagnostic
efficacy
of
HW
Raman
spectroscopy
integrated
with
PCA–LDA
algorithm
as
com-
pared
to
the
intensity
ratio
diagnostic
algorithms.
One
note
that
PCA
is
primarily
for
data
reduction
rather
than
identification
of
biochemical
or
biomolecular
components
of
tissue,
it
is
difficult
to
interpret
the
physical
meanings
from
the
component
spectra.
This
could
be
tackled
by
using
more
powerful
diagnostic
algo-
rithms
such
as
genetic
algorithms
(Mountford
et
al.,
2001),
the
distinctive
spectral
regions
that
are
optimal
for
tissue
differen-
tiation
may
be
indentified
and
related
to
particular
biochemical
and
biomolecular
changes
(e.g.,
proteins,
lipids
and
nucleic
acid)
associated
with
neoplastic
changes.
It
is
also
crucial
to
further
understanding
the
relationship
between
the
neoplastic-related
morphologic/biochemical
changes
and
tissue
HW
Raman
spec-
tra
for
laryngeal
precancer/cancer
diagnosis
(Stone
et
al.,
2000;
Bergholt
et
al.,
2011a;
Teh
et
al.,
2008).
We
are
currently
working
on
this
direction
by
recruiting
more
patients
for
developing
more
powerful
HW
Raman
genetic
diagnostic
algorithms
for
real-time
laryngeal
tissue
diagnosis
and
characterization.
In
summary,
this
work
demonstrates
that
transnasal
image-
guided
real-time
HW
Raman
spectroscopic
technique
integrated
with
an
endoscope-based
fiber-optic
Raman
probe
can
be
used
to
acquire
HW
Raman
spectra
from
laryngeal
tissue
in
the
range
2800–3020
cm1during
clinical
endoscopic
examination.
The
sig-
nificant
differences
in
HW
Raman
spectra
are
observed
in
normal
and
cancer
laryngeal
tissue.
The
PCA–LDA
modeling
on
HW
Raman
spectra
provides
good
tissue
classification,
illustrating
the
potential
of
HW
Raman
spectroscopy
for
real-time
laryngeal
cancer
detection
during
clinical
endoscopic
examination.
Acknowledgement
This
research
was
supported
by
the
Biomedical
Research
Coun-
cil,
and
the
National
Medical
Research
Council,
Singapore.
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... Although promising, for laryngeal tissue, there are only a few feasibility studies performed on cancer detection with Raman spectroscopy. Different research groups determined that Raman spectra can be obtained rapidly and can reveal differences between non-cancerous tissue and LSCC [13][14][15][16][17]. These findings are based on the global spectral differences between cancerous and non-cancerous tissue, and the exact differences in discrimination between tumors and different surrounding tissue structures like connective tissue, gland, cartilage, muscle, and necrotic tissue were not analyzed. ...
... The high false positive rate for the salivary gland is in line with earlier observations for oral cavity tissue where the salivary gland was also wrongly identified as a tumor in 35% of the cases [24]. The discriminative power is lower than the 0.97 reported by Lin et al. [16] in a study where they used a trans-nasal Raman spectroscopy technique integrated with an endoscope-based fiber-optic Raman probe to collect spectra of cancerous and non-cancerous laryngeal tissue in the CH-stretching region. ...
... Some limitations are associated with the implementation of the Raman spectroscopy fingerprint region, especially if used in vivo. This region is hampered by the strong signal background generated by the optical fiber, requiring complicated probe designs with multiple fibers and filters which makes them expensive and difficult to reproduce [16][17][18]. Also, the signal intensity in the fingerprint region is relatively low with relatively large fluorescence backgrounds, which may cause long signal integration times making it impractical for clinical use [16][17][18]. ...
Article
Full-text available
As for many solid cancers, laryngeal cancer is treated surgically, and adequate resection margins are critical for survival. Raman spectroscopy has the capacity to accurately differentiate between cancer and non-cancerous tissue based on their molecular composition, which has been proven in previous work. The aim of this study is to investigate whether Raman spectroscopy can be used to discriminate laryngeal cancer from surrounding non-cancerous tissue. Patients surgically treated for laryngeal cancer were included. Raman mapping experiments were performed ex vivo on resection specimens and correlated to histopathology. Water concentration analysis and CH-stretching region analysis were performed in the high wavenumber range of 2500–4000 cm⁻¹. Thirty-four mapping experiments on 22 resection specimens were used for analysis. Both laryngeal cancer and all non-cancerous tissue structures showed high water concentrations of around 75%. Discriminative information was only found to be present in the CH-stretching region of the Raman spectra of the larynx (discriminative power of 0.87). High wavenumber region Raman spectroscopy can discriminate laryngeal cancer from non-cancerous tissue structures. Contrary to the findings for oral cavity cancer, water concentration is not a discriminating factor for laryngeal cancer. Supplementary Information The online version contains supplementary material available at 10.1007/s10103-023-03849-4.
... Unscrambling the multi-scaled interference and matrix effects, and unlocking constituent-specific information in each spectrum, lies at the heart of reagentless POC technology [1,11,12]. The use of artificial intelligence in biosensor development and operation is currently a reality [13,14]. Significant advances in searching for consistent covariance modes capable of isolating both inference and constituents information has allowed for the provision of information equivalence between spectra and hemograms, leading to the precise quantification and diagnosis of clinical conditions [1,[11][12][13][14][15][16] and demonstrating the possibility of quantifying white blood cells (WBCs) in dog blood [2]. ...
... The use of artificial intelligence in biosensor development and operation is currently a reality [13,14]. Significant advances in searching for consistent covariance modes capable of isolating both inference and constituents information has allowed for the provision of information equivalence between spectra and hemograms, leading to the precise quantification and diagnosis of clinical conditions [1,[11][12][13][14][15][16] and demonstrating the possibility of quantifying white blood cells (WBCs) in dog blood [2]. Herein, we explore the quantification of WBCs in cat blood through the isolation of specific WBC information in blood spectra, taking advantage of the feline physiology for spectral quantification, such as the use of scattering effects of WBCs vs. red blood cells (RBCs) and avoiding the use of inferential WBC quantification, such as the natural relationship between RBC and WBC levels. ...
Article
Full-text available
Spectral point-of-care technology is reagentless with minimal sampling (<10 μL) and can be performed in real-time. White blood cells are non-dominant in blood and in spectral information, suffering significant interferences from dominant constituents such as red blood cells, hemoglobin and billirubin. White blood cells of a bigger size can account for 0.5% to 22.5% of blood spectra information. Knowledge expansion was performed using data augmentation through the hybridization of 94 real-world blood samples into 300 synthetic data samples. Synthetic data samples are representative of real-world data, expanding the detailed spectral information through sample hybridization, allowing us to unscramble the spectral white blood cell information from spectra, with correlations of 0.7975 to 0.8397 and a mean absolute error of 32.25% to 34.13%; furthermore, we achieved a diagnostic efficiency between 83% and 100% inside the reference interval (5.5 to 19.5 × 109 cell/L), and 85.11% for cases with extreme high white blood cell counts. At the covariance mode level, white blood cells are quantified using orthogonal information on red blood cells, maximizing sensitivity and specificity towards white blood cells, and avoiding the use of non-specific natural correlations present in the dataset; thus, the specifity of white blood cells spectral information is increased. The presented research is a step towards high-specificity, reagentless, miniaturized spectral point-of-care hematology technology for Veterinary Medicine.
... These fingerprint spectra can be interpreted to understand the molecular diversity on a spatial and temporal level [12,13]. The Raman spectroscopic method has been employed for various applications including detection of de novo lipogenesis in animal tissues [14], chemotaxonomic identification [15], and cancer cell recognition [16]. ...
... However, in the second derivative spectra of cells grown in TP, the broad CH peak was resolved to reveal 4 sharp peaks at 2850, 2882, 2934, and 2975 cm À1 . The peaks at 2850 and 2882 cm À1 corresponded to CH symmetric and anti-symmetric stretching modes, respectively, which originated from the lipids in the cell structure [16,56]. The CH 2 vibrational peak at 2850 cm À1 associated with unsaturated lipids was a result of vibrational stretching of = CH. ...
Article
Metabolic dynamics of bacterial cells is needed for understanding the correlation between changes in environmental conditions and cell metabolic activity. In this study, Raman spectroscopy combined with deuterium labelling was used to analyze the metabolic activity of a single Escherichia coli O157:H7 cell. The incorporation of deuterium from heavy water into cellular biomolecules resulted in the formation of carbon-deuterium (CD) peaks in the Raman spectra, indicating the cell metabolic activity. The broad vibrational peaks corresponding to CD and CH peaks encompassed different specific shifts of macromolecules such as protein, lipids, and nucleic acid. The utilization of tryptophan and oleic acid by the cell as the sole carbon source led to changes in cell lipid composition, as indicated by new peaks in the second derivative spectra. Thus, the proposed method could semi-quantitatively determine total metabolic activity, macromolecule specific identification, and lipid and protein metabolism in a single cell.
... The combination of signal processing, chemometrics, and artificial intelligence in biosensors is improving the accuracy of existing technologies by allowing signal corrections and pattern recognitions that quantify and diagnose clinical conditions, e.g., infection [9] or cancer [10]. Solving multi-scale information and matrix effects in spectroscopy [11][12][13] allows one to explore information-rich features in each sample spectra and to develop the next generation of reagent-less POC technologies. ...
Article
Full-text available
Total white blood cells count is an important diagnostic parameter in both human and veterinary medicines. State-of-the-art is performed by flow cytometry combined with light scattering or impedance measurements. Spectroscopy point-of-care has the advantages of miniaturization, low sampling, and real-time hemogram analysis. While white blood cells are in low proportions, while red blood cells and bilirubin dominate spectral information, complicating detection in blood. We performed a feasibility study for the direct detection of white blood cells counts in canine blood by visible-near infrared spectroscopy for veterinary applications, benchmarking current chemometrics techniques (similarity, global and local partial least squares, artificial neural networks and least-squares support vector machines) with self-learning artificial intelligence, introducing data augmentation to overcome the hurdle of knowledge representativity. White blood cells count information is present in the recorded spectra, allowing significant discrimination and equivalence between hemogram and spectra principal component scores. Chemometrics methods correlate white blood cells count to spectral features but with lower accuracy. Self-Learning Artificial Intelligence has the highest correlation (0.8478) and a small standard error of 6.92 × 109 cells/L, corresponding to a mean absolute percentage error of 25.37%. Such allows the accurate diagnosis of white blood cells in the range of values of the reference interval (5.6 to 17.8 × 109 cells/L) and above. This research is an important step toward the existence of a miniaturized spectral point-of-care hemogram analyzer.
... RS has previously been used in biomarker and cancer research and tissue composition analysis for different diseases [34,[38][39][40] (Table 1.3). RS has previously been used as a tool in the research for bladder and prostate [41,42], laryngeal [43,44], breast [45,46], lung [47,48], cervical [49,50], skin [51], stomach [52,53], pancreatic [54], colon [55], brain cancers [13,15,[56][57][58][59][60][61] and leukemia [62,63]. [39,66]. ...
Thesis
Full-text available
Glioblastoma (GB) is the most common primary malignant brain tumor. Despite improvements in treatments, survival probability has remained shorter than 2 years for most patients over the last 20 years. Accurate diagnosis of GB requires pathological evaluation of the tumor tissues using light microscopy, along with routine or specialized staining. Recent research also identified significant genetic/epigenetic alterations that influence diagnosis, prognosis, and treatment in addition to routine pathological evaluation. Identification requires the tissue to be sampled many times and analyzed using different methods that require additional time, resources, and expertise. To determine whether the tissue used for routine analysis can also be used to perform more detailed and comprehensive analysis without staining, we propose to use Raman Spectroscopy (RS), which is a label-free and non-destructive technique. RS provides molecule-specific spectra from the chemical composition of the sample for rapid analysis. In this thesis, we investigated GB, white matter (WM), gray matter (GM), and necrosis (NC) regions of GB patients using RS to determine whether a similar precision can be achieved as the routine histomorphologic diagnostic process. First, we proposed a refined protocol for effectively clearing paraffin from Formalin-Fixed Paraffin-Embedded brain tissue sections, without destroying the sample morphology and chemical composition, for eliminating the substantial Raman spectra of paraffin. We demonstrated that the less expensive and less toxic clearing agent CleareneTM removes paraffin as effectively as p-Xylene, the mostly used clearing agent in histopathology laboratories. Thus, we suggest substituting CleareneTM with p-Xylene for deparaffinization of brain tissue sections for Raman spectral analysis. Second, we optimized the choice of Raman spectrum acquisition parameters (excitation wavelength, acquisition time, accumulation count,), tissue thickness, and Raman substrate type (CaF2, glass). Third, we acquired the Raman spectra of GB, WM, GM, and NC regions and analyzed the spectral profile regarding the Raman peaks given in the literature. Raman spectra of GB and WM regions (nGB = 20, nWM = 18), which were annotated by an expert neuropathologist, have been classified with 87.2±1% GB and 90.7±1% WM training/test accuracies using machine learning models (SVM, kNN, RF). The effect of pre-processing of Raman spectra on classification accuracies has been investigated. Sample preparation conditions, Raman acquisition protocols, and machine learning classification models showed a successful proof-of-concept demonstration for the proposed Raman-based GB identification workflow. While there is room for further refining the machine learning models for improved training and validation accuracies, these protocols could be improved for eventual clinical utility. Once the clinical applicability and refined classification accuracies are demonstrated, these protocols might assist neuropathologists in error-free identification of GB in the clinics.
Article
Esophageal cancer is one of the leading causes of cancer-related deaths worldwide. The identification of residual tumor tissues in the surgical margin of esophageal cancer is essential for the treatment and prognosis of cancer patients. But the current diagnostic methods, either pathological frozen section or paraffin section examination, are laborious, time-consuming, and inconvenient. Raman spectroscopy is a label-free and non-invasive analytical technique that provides molecular information with high specificity. Here, we report the use of a portable Raman system and machine learning algorithms to achieve accurate diagnosis of esophageal tumor tissue in surgically resected specimens. We tested five machine learning-based classification methods, including k-Nearest Neighbors, Adaptive Boosting, Random Forest, Principal Component Analysis-Linear Discriminant Analysis, and Support Vector Machine (SVM). Among them, SVM shows the highest accuracy (88.61 %) in classifying the esophageal tumor and normal tissues. The portable Raman system demonstrates robust measurements with an acceptable focal plane shift of up to 3 mm, which enables large-area Raman mapping on resected tissues. Based on this, we finally achieve successful Raman visualization of tumor boundaries on surgical margin specimens, and the Raman measurement time is less than 5 min. This work provides a robust, convenient, accurate, and cost-effective tool for the diagnosis of esophageal cancer tumors, advancing toward Raman-based clinical intraoperative applications.
Article
Purpose The aim of this article was to review and collectively assess the published studies of fiber-optic Raman spectroscopy (RS) of the in vivo detection and diagnosis of head and neck carcinomas, and to derive a consensus average of the accuracy, sensitivity and specificity. Methods The authors searched four databases, including Ovid-Medline, Ovid-Embase, Cochrane Library, and the China National Knowledge Infrastructure (CNKI), up to February 2023 for all published studies that assessed the diagnostic accuracy of fiber-optic RS in the in vivo detection of head and neck carcinomas. Nonqualifying studies were screened out in accordance with the specified exclusion criteria, and relevant information about the diagnostic performance of fiber-optic RS was excluded. Publication bias was estimated by Deeks’ funnel plot asymmetry test. A random effects model was adopted to calculate the pooled sensitivity, specificity and diagnostic odds ratio (DOR). Additionally, the authors conducted a summary receiver operating characteristic (SROC) curve analysis and threshold analysis, reporting the area under the curve (AUC) to evaluate the overall performance of fiber-optic RS in vivo . Results Ten studies (including 16 groups of data) were included in this article, and a total of 5365 in vivo Raman spectra (cancer = 1,746; normal = 3,619) were acquired from 877 patients. The pooled sensitivity and specificity of fiber-optic RS of head and neck carcinomas were 0.88 and 0.94, respectively. SROC curves were generated to estimate the overall diagnostic accuracy, and the AUC was 0.96 (95% CI [0.94–0.97]). No significant publication bias was found in this meta-analysis by Deeks’ funnel plot asymmetry test. The heterogeneity of these studies was significant; the Q test values of the sensitivity and specificity were 106.23 ( P = 0.00) and 64.21 ( P = 0.00), respectively, and the I2 index of the sensitivity and specificity were 85.88 (95% CI [79.99–91.77]) and 76.64 (95% CI [65.45–87.83]), respectively. Conclusion Fiber-optic RS was demonstrated to be a reliable technique for the in vivo detection of head and neck carcinoma with high accuracy. However, considering the high heterogeneity of these studies, more clinical studies are needed to reduce the heterogeneity, and further confirm the utility of fiber-optic Raman spectroscopy in vivo .
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Squamous cell carcinoma (SCC) is one of the most common as well as deadliest kinds of laryngeal cancer. The precise and early identification of laryngeal cancer plays a pivotal role in reducing mortality and maintaining laryngeal structure and vocal fold function. But small variations in the laryngeal tissues may go undetected by the human eye, which leads to misdiagnosis. In this study, we devise an early laryngeal cancer classification framework using the hybridization of deep and handcrafted features. The deep features of the DenseNet 201 using transfer learning and handcrafted features using Local Binary Pattern (LBP) and First-order statistics (STAT)s are extracted from the endoscopic narrowband images of the larynx and fused together which resulted in more representative features. From these hybridized features, the optimal features are selected by the Recursive Feature Elimination with Random Forest (RFE- RF) method. Firstly, the selected hybrid features are classified with three effective Machine Learning classifiers like Random Forest (RF), Support Vector Machine (SVM), and k-Nearest Neighbor (k-NN), and the results are compared with a stacking-based ensemble learning classification method using (SVM), (RF) and (k-NN) in order to distinguish early-stage SCC tissues, healthy tissues and precancerous tissues. The combination of hybrid features, effective feature selection, and an Ensemble classifier produced a median categorization recall of 99.5% on a standard dataset, which surpasses the state of the art (recall = 98%).
Article
A strong fluorescence background is one of the common interference factors of Raman spectroscopic analysis in biological tissue. This study developed an endoscopic shifted-excitation Raman difference spectroscopy (SERDS) system for real-time in vivo detection of nasopharyngeal carcinoma (NPC) for the first time. Owing to the use of the SERDS method, the high-quality Raman signals of nasopharyngeal tissue could be well extracted and characterized from the complex raw spectra by removing the fluorescence interference signals. Significant spectral differences relating to proteins, phospholipids, glucose, and DNA were found between 42 NPC and 42 normal tissue sites. Using linear discriminant analysis, the diagnostic accuracy of SERDS for NPC detection was 100%, which was much higher than that of raw Raman spectroscopy (75.0%), showing the great potential of SERDS for improving the accurate in vivo detection of NPC.
Article
Objectives The purpose of study is to improve the classification accuracy by comparing the results obtained by applying decision tree ensemble learning, which is one of the methods to increase the classification accuracy for a relatively small dataset, with the results obtained by the convolutional neural network (CNN) algorithm for the diagnosis of glottal cancer. Methods Pusan National University Hospital (PNUH) dataset were used to establish classifiers and Pusan National University Yangsan Hospital (PNUYH) dataset were used to verify the classifier's performance in the generated model. For the diagnosis of glottic cancer, deep learning-based CNN models were established and classified using laryngeal image and voice data. Classification accuracy was obtained by performing decision tree ensemble learning using probability through CNN classification algorithm. In this process, the classification and regression tree (CART) method was used. Then, we compared the classification accuracy of decision tree ensemble learning with CNN individual classifiers by fusing the laryngeal image with the voice decision tree classifier. Results We obtained classification accuracy of 81.03 % and 99.18 % in the established laryngeal image and voice classification models using PNUH training dataset, respectively. However, the classification accuracy of CNN classifiers decreased to 73.88 % in voice and 68.92 % in laryngeal image when using an external dataset of PNUYH. To solve this problem, decision tree ensemble learning of laryngeal image and voice was used, and the classification accuracy was improved by integrating data of laryngeal image and voice of the same person. The classification accuracy was 87.88 % and 89.06 % for the individualized laryngeal image and voice decision tree model respectively, and the fusion of the laryngeal image and voice decision tree results represented a classification accuracy of 95.31 %. Conclusion The results of our study suggest that decision tree ensemble learning aimed at training multiple classifiers is useful to obtain an increased classification accuracy despite a small dataset. Although a large data amount is essential for AI analysis, when an integrated approach is taken by combining various input data high diagnostic classification accuracy can be expected.
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Raman spectroscopy is a molecular vibrational spectroscopic technique that is capable of optically probing the biomolecular changes associated with diseased transformation. The purpose of this study was to explore near-infrared (NIR) Raman spectroscopy for identifying precancer (dysplasia) from normal gastric mucosa tissues. High-quality Raman spectra in the range of 800-1800 cm-1 can be acquired from gastric tissue within 5 seconds. Raman spectra showed significant differences between normal and dysplastic tissue, particularly in the spectral ranges of 850-900, 1,200-1,290 and 1,500-1,800 cm-1 which contained signals related to hydroxyproline, amide III and amide I of proteins, and C=C stretching of lipids, respectively. The ratio of Raman intensities at 875 to 1,450 cm-1 provided good differentiation between normal and dysplastic gastric tissue (unpaired Students' t-test, p
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Melanoma is a malignant neoplasm commonly arising from the pigmented cells of the skin. Although it is curable if caught early, effective therapies for more advanced and often metastatic melanomas are lacking. In addition, the frequency of melanoma is increasing worldwide, possibly associated with increased exposure to ultraviolet light.
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Raman spectroscopy (RS) has potential for disease classification within the gastrointestinal tract (GI). A near-infrared (NIR) fiber-optic RS system has been developed previously. This study reports the first in vivo Raman spectra of human gastrointestinal tissues measured during routine clinical endoscopy. This was achieved by using this system with a fiber-optic probe that was passed through the endoscope instrument channel and placed in contact with the tissue surface. Spectra could be obtained with good signal-to-noise ratio in 5 s. The effects on the spectra of varying the pressure of the probe tip on the tissue and of the probe-tissue angle were determined and shown to be insignificant. The limited set of spectra from normal and diseased tissues revealed only subtle differences. Therefore, powerful spectral-sorting algorithms, successfully implemented in prior ex vivo studies, are required to realize the full diagnostic potential of RS for tissue classification in the GI.
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In attempting to analyze, on digital computers, data from basically continuous physical experiments, numerical methods of performing familiar operations must be developed. The operations of differentiation and filtering are especially important both as an end in themselves, and as a prelude to further treatment of the data. Numerical counterparts of analog devices that perform these operations, such as RC filters, are often considered. However, the method of least squares may be used without additional computational complexity and with considerable improvement in the information obtained. The least squares calculations may be carried out in the computer by convolution of the data points with properly chosen sets of integers. These sets of integers and their normalizing factors are described and their use is illustrated in spectroscopic applications. The computer programs required are relatively simple. Two examples are presented as subroutines in the FORTRAN language.
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Patients with Barrett's esophagus (BE) undergo periodic endoscopic surveillance with random biopsies in an effort to detect dysplastic or early cancerous lesions. Surveillance may be enhanced by near-infrared Raman spectroscopy (NIRS), which has the potential to identify endoscopically-occult dysplastic lesions within the Barrett's segment and allow for targeted biopsies. The aim of this study was to assess the diagnostic performance of NIRS for identifying dysplastic lesions in BE in vivo. Raman spectra (Pexc=70 mW; t=5 s) were collected from Barrett's mucosa at endoscopy using a custom-built NIRS system (lambdaexc=785 nm) equipped with a filtered fiber-optic probe. Each probed site was biopsied for matching histological diagnosis as assessed by an expert pathologist. Diagnostic algorithms were developed using genetic algorithm-based feature selection and linear discriminant analysis, and classification was performed on all spectra with a bootstrap-based cross-validation scheme. The analysis comprised 192 samples (112 non-dysplastic, 54 low-grade dysplasia and 26 high-grade dysplasia/early adenocarcinoma) from 65 patients. Compared with histology, NIRS differentiated dysplastic from non-dysplastic Barrett's samples with 86% sensitivity, 88% specificity and 87% accuracy. NIRS identified 'high-risk' lesions (high-grade dysplasia/early adenocarcinoma) with 88% sensitivity, 89% specificity and 89% accuracy. In the present study, NIRS classified Barrett's epithelia with high and clinically-useful diagnostic accuracy.
Article
Optical spectroscopy has been extensively studied as a potential in vivo diagnostic tool that can provide information about both the chemical and morphologic structure of tissue in near real time. Most in vivo studies have concentrated on elastic scattering and fluorescence spectroscopies since these signals can be obtained with a good signal-to-noise ratio quickly. However, Raman spectroscopy, an inelastic scattering process, provides a wealth of spectrally narrow features that can be related to the specific molecular structure of the sample. Because of these advantages, Raman spectroscopy has been used to study static and dynamic properties of biologically important molecules in solution, in single living cells, in cell cultures, and more recently, in tissues. This article reviews recent developments in the attempt to develop diagnostic techniques for precancers and cancers, based on Raman spectroscopy. The article surveys important transformations that occur as tissues progress from normal to precancer and cancerous stages. We briefly review the extensive literature that summarizes the features and interpretation of Raman spectra of these molecules in solution, and in progressively more complex biological systems. Finally, spectra obtained from intact tissues are comprehensively reviewed and discussed in terms of the molecular and microscopic literature to develop a framework for analyzing Raman signals to yield information about the molecular changes that occur with neoplasia. The article concludes with our perspective on the potential role of Raman spectroscopy in diagnosing precancer and cancerous tissues.
Article
Background and Objectives Raman spectroscopy (RS) provides information about molecular structure and is a potential tool for non-invasive tissue diagnosis. To determine if Raman spectra could be obtained rapidly from laryngeal tissue in vitro, and compare Raman spectra from normal, benign, and cancerous laryngeal tissue.Study Design/Materials and Methods Forty-seven laryngeal specimens were studied using RS with signal acquisition times (SAT) between 1 and 30 second(s). Multivariate analysis was used to determine the diagnostic ability of RS compared to standard histology (n = 18, 13, and 16 respectively for normal tissue, carcinoma, and squamous papilloma).ResultsGood quality spectra were obtained with 5-second SAT. Spectral peak analysis showed prediction sensitivities of 89%, 69%, and 88%, and specificities of 86%, 94%, and 94% for normal tissue, carcinoma, and papilloma.Conclusions In the larynx, spectral differences appear to exist between normal tissue, carcinoma, and papilloma. The ability to obtain spectra rapidly supports potential for future in vivo studies. © 2005 Wiley-Liss, Inc.
Article
There is a profound clinical need for a diagnostic tool that will enable clinicians to identify early neoplastic change in the oesophagus. Raman Spectroscopy (RS) has demonstrated the potential to provide non-invasive, rapid, objective diagnosis of endoscopically invisible precancerous oesophageal dysplasia in vitro. RS analyses biological material to identify highly specific biochemical information that can be used to influence clinical care. Raman spectroscopic mapping could provide automated assessment of tissue biopsies to aid histopathological diagnosis in vitro. Furthermore, the recent development of fibre-optic Raman probes has enabled endoscopic assessment of oesophageal mucosa in vivo. Accurate identification of dysplasia will enable targeted endoscopic resection of early lesions preventing the development of oesophageal cancer. This review summarises the development of Raman systems for use as laboratory based analytical adjuncts and endoscopic diagnostic tools in the distal oesophagus.