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Progress in the study of false smut disease in rice

Authors:

Abstract

Rice false smut disease is an increasing concern for research and production, not only because of the increasing epidemic occurrence in rice production, but also the intriguing specific pathogenesis of the disease to be a unique pathological system to enrich the molecular mechanism of plant-microbe interaction. Progresses have been achieved in the pathogen phylogenetic placement, the alternative hosts, the pathogen morphology and diversity, the toxins generated by false smut balls, the artificial inoculation method, and the pathogen transformation as well as rice resistance to the disease. However, it is still controversy on the infection process. It is not clear how the life cycle of this pathogen is coupled with the disease cycle. This review summarized our current understanding on the pathogen, the pathogenesis, and the rice resistance to the disease. Future work should pay attention to developing a more rapid and effective system to evaluate rice resistance and susceptibility to the disease, screening of rice germplasm for disease-resistance breeding, studying the resistance inheritance, and investigating the molecular mechanism of rice-false smut fungus interaction.
Journal of Agricultural Science and Technology A 2 (2012) 1211-1217
Earlier title: Journal of Agricultural Science and Technology, ISSN 1939-1250
Progress in the Study of False Smut Disease in Rice
Xiaoyi Guo1, Yan Li1, Jing Fan1, Liang Li1, Fu Huang2 and Wenming Wang1
1. Rice Research Institute, Sichuan Agricultural University, Chengdu 611130, China
2. Department of Plant Pathology, College of Agronomy, Sichuan Agricultural University, Chengdu 611130, China
Received: August 30, 2012 / Published: November 20, 2012.
Abstract: Rice false smut disease is an increasing concern for research and production, not only because of the increasing epidemic
occurrence in rice production, but also the intriguing specific pathogenesis of the disease to be a unique pathological system to enrich
the molecular mechanism of plant-microbe interaction. Progresses have been achieved in the pathogen phylogenetic placement, the
alternative hosts, the pathogen morphology and diversity, the toxins generated by false smut balls, the artificial inoculation method,
and the pathogen transformation as well as rice resistance to the disease. However, it is still controversy on the infection process. It is
not clear how the life cycle of this pathogen is coupled with the disease cycle. This review summarized our current understanding on
the pathogen, the pathogenesis, and the rice resistance to the disease. Future work should pay attention to developing a more rapid
and effective system to evaluate rice resistance and susceptibility to the disease, screening of rice germplasm for disease-resistance
breeding, studying the resistance inheritance, and investigating the molecular mechanism of rice-false smut fungus interaction.
Key words: Rice, false smut disease, false smut ball, disease cycle, resistance, review.
1. Introduction
Rice false smut, also known as pseudo-smut, or
green smut, has been recorded in all rice-growing
countries worldwide [1-3]. It is categorized as a minor
disease due to its sporadic occurrence. However, the
disease has emerged as an increasing concern for rice
production and pathologists since the widespread
cultivation of hybrid rice and heavy application of
nitrogenous fertilizer [4], and became the most
devastating rice grain disease in the past two decades
in the major rice-growing regions in China [5].
Ustilaginoidea virens (Uv), the agent causing false
smut disease in rice, belongs to Ascomycete. Infection
by the fungus transforms individual grains of the
panicle into a yellowish smut ball, which changes to
yellowish orange, green, olive green and finally to
greenish black. The smut balls are often covered by
sclerotia that eventually fall to the ground, leaving
abundance of powdery chlamydospores. Uv is found
Corresponding author: Wenming Wang, professor,
research field: plant pathology. E-mail:
j316wenmingwang@sicau.edu.cn.
to produce both sexual (ascospores) and asexual
(chlamydospores) stages in its life cycle with multiple
propagules [6, 7]. Recently, Villosiclava virens was
proposed as the new name for the teleomorph of the
false smut fungus [8]. The damages by false smut
disease include the reduction of yield, the
contamination of grains and straws with ustiloxins, the
mycotoxins produced by Uv on diseased tissues and
the antimitotic cyclic peptides from its
chlamydospores, which are poisonous to both human
and animals [9, 10]. This review summarized the
research progress on the disease so as to help us to
explore the best research point in rice-Uv interaction.
2. The Agent Causing False Smut Disease in
Rice
2.1 The Pathogen
Rice false smut disease is caused by the fungal
pathogen Ustilaginoidea virens, which produces both
sexual ascospores and asexual chlamydospores in its
life cycle [11, 12]. The anamorph form,
Ustilaginoidea virens (Cooke) Takahashi, is widely
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Progress in the Study of False Smut Disease in Rice
1212
used for description of the causing agent of false smut
in rice and maize [3, 13]. The teleomorph had been
named Claviceps virens Sakurai ex Nakata and
Claviceps oryzae-sativae Hashioka because the
teleomorphic characteristics of U. virens are similar to
those of Claviceps [14]. However, phylogenetic
analyses using sequences of the large subunit of the
ribosomal RNA gene suggested that members of
Ustilaginoideae are distinct from teleomorphic genera
of Clavicipitaceae and should be recognized as a
monophyletic group within Hypocreales [15].
Molecular phylogenetic studies have also revealed that
Ustilaginoidea species formed a paraphyletic group,
and not congeneric with Claviceps based on the
ALDH1-1 gene, which encodes a member of the
aldehyde dehydrogenase family [16]. Based on
morphological and biological characteristics of the
teleomorph, Tanaka et al. [8] suggested Villosiclava
virens as the new name for the teleomorph of
Ustilaginoidea virens [8], which is accepted and the
name was used by recent reports [2, 6, 17, 18].
2.2 Diversity of the Pathogen
Strains isolated from different regions or different
varieties are distinguishable in genetic diversity and in
virulence to rice. Zhou et al. [4] analyzed 110 U. virens
isolates sampled from Liaoning and Beijing of North
China using amplified fragment length polymorphism
(AFLP) markers and revealed that these isolates can be
divided into three groups according to the genetic
distance and the isolates from the same region can be
placed into one group. The populations among different
locations where sexual stage of the pathogen is rare to
be found within ecological region are similar, and the
variation of this pathogen has mainly arisen via asexual
mechanisms [4]. 59 isolates from Sichuan of China on
three rice hybrids could be classified into six groups
based on their virulence to the tested rice hybrids [19].
2.3 False Smut Ball and Chlamydospore
False smut balls on rice panicles are the typical
symptom of the disease. The interiors of the false smut
balls are intertwined with hyphae at early stage and
then chlamydospores are formed. The chlamydospores
are almost smooth when young, and become warty
when mature [20]. Under bright-field light microscopy,
the conidia are found to be round to eliptical and warty
on the surface with diameters approximately ranging
from 3 to 5 mm. Under scanning electron microscopy,
the globose to irregularly rounded conidia are
ornamented with prominent spines. The spines are
pointed at the apex or irregularly curved, and
approximately 200-550 nm long [6, 20]. Under
transmission electron microscopy, both the spined
conidia and hyphae displayed lipid globules and
vacuoles in the cytoplasm enclosed by an
electron-transparent cell wall. Whereas, on the surface
of conidia, the electron-dense spines displayed
obclavate or irregularly protruding shapes with varying
heights along the conidial cell wall. Hyphae had
concentric bodies that showed an electron-transparent
core surrounded by an electron-dense layer [20]. In
addition, the chlamydospores produced in culture
medium are found prone to germinate in distilled water
and produces secondary spores. The conidia are
holoblastically and sympodially produced at the apex of
each conidiophore cell [6].
2.4 Sclerotium
The fungus has several kinds of propagules. In
addition to the chlamydospores in smut balls, sclerotia
are often formed on the colony surfaces, especially in
later autumn, with relatively lower temperatures and
high temperature differences between day and night
[21, 22]. The sclerotia existing on or under the soil
surface can germinate and form fruit-body, then
produce ascospores that contribute to the primary
infection sources [7]. Recently, Fu et al. [6] described
their observation on sclerotia in detail. The sclerotia
produced on the mature false smut balls are black
horseshoe-shaped and irregular oblong or flat, ranged
from 2 to 20 mm. The outer sclerotium wall appears
Progress in the Study of False Smut Disease in Rice
1213
rough at a low resolution under scanning electron
microscop, whereas, the surface is full of projections at
a higher magnification. The interior of each sclerotium
is intertwined with compact hyphae [6].
2.5 Ustiloxin
False smut balls formed on rice panicles produce a
number of metabolites that are toxic to both plants and
animals. The toxicity of the water extract from the
false smut balls was first reported to rabbits [23].
Injection of the water extract of false smut balls into
mice can cause damages to liver and kidney quite
similar to those observed in lupinosis caused by
phomopsin A, a mycotoxin produced by Phomopsis
leptostromiformis [9]. The toxic substance, named
ustiloxin, was isolated, and its structure was
determined by a combination of X-ray
crystallographic and amino acid analyses. Its structure
and biological activity are closely related to those of
phomopsin A, causing the lupinosis [24].
Subsequently, five ustiloxins, including ustiloxin A, B,
C, D and E, were isolated [25]. Ustiloxins exhibit
phytotoxic and mycotoxic effects through their potent
inhibition of microtubule assembly [26]. Ustiloxin A,
structurally resembles phomopsin A, inhibits the
formation of a particular intra-chain cross-link in
beta-tubulin and the alkylation of tubulin by iodo
acetamide. In addition, ustiloxin A inhibits exposure
of hydrophobic areas on the surface of the tubulin
molecule via strongly stabilizing the binding of
colchicine to tubulin [27]. Ustiloxin D was
synthesized via an unprecedented ethynyl aziridine
ring-opening of phenol derivatives including 15 steps
from commercially available compounds [28]. A
sensitive method to detect the presence of ustiloxin A
was developed for routine monitoring of the
contamination of ustiloxin A in forage rice silage [29].
3. Artificial Inoculation and Pathogenesis
3.1 Artificial Inoculation
It is necessary to develop an efficient inoculation
method for the investigation of the rice-Uv interaction.
Up to date, quite a few reports consistently conclude
that inoculation by injection of spores into the sheath
during booting stage is sufficient and efficient to
induce disease symptoms [30-32]. Inoculums can be
obtained by inoculation of Uv on XBZ solid medium
and transferring into potato sucrose (PS) broth at
26 C [31, 33]. After filtered the hyphae, conidia can
be collected from the filtrate by centrifugation and
re-suspending the conidia in fresh PS medium to a
density of 2-5 × 105 conidia mL-1 and used as the
inoculums [17]. Nevertheless, the conidia and
suspension of hyphae fragments obtained by breaking
the mycelia with a high-speed blender were also used
as inoculums in some labs [19]. The concentration of
the conidia is not as important as temperature and
humidity for the disease development. After injection
of the conidia, the inoculated plants should be put at
16 C for 2 days and then at 26 C with 100%
humidity for 5 days for the best development of the
false smut balls [34].
Wang et al. [35] obtained a white smut strain that is
virulent to rice plants. With this strain, they found that
disease severity is higher by injection than by
spraying inoculation as assessed by percent of infected
panicles. Low temperature exposure after inoculation
has a strong stimulatory effect on disease
development [35].
3.2 The Procedure of Pathogenesis
In spite of the increasing importance of false smut
disease, detail on the procedure of pathogenesis by Uv
has not been described until recently. The
chlamydospores survived through the winter in paddy
soils are believed to be the primary source of infection.
The chlamydospores germinate on coleoptile
epidermal cells of rice seedlings, and the infection
hyphae invade intercellular spaces and reach the
meristematic tissues of tillers during the vegetative
stage, and transfer to young panicles in leaf sheaths to
infect the developing florets [21]. It is hypothesized
Progress in the Study of False Smut Disease in Rice
1214
that the infection occurs in spikelets of panicles in the
leaf sheath before heading [11]. The fungus does exist
in panicles at the booting stage because nested-PCRs
targeting the species-specific ITS region of ribosomal
DNA have confirmed the presence of the fungus in
whole panicles before rice heading [36]. Conversely,
infection does not occur after heading by spraying
inoculation in fields [5, 32, 37]. After heading, it is
easy to clearly identify infected spikelets from
uninfected one on a panicle because the infected
spikelets contain the white fungus and finally form
smut balls [5, 21]. The pathogen can attack the root at
the seedling stage and lead to asymptomatic
colonization in the entire plant, as detected by
molecular techniques and histological observation [38,
39]. The pathogen is also found to infect rice
coleoptiles intercellularly at the earlier germination
stage [17].
Three labs reported that a green fluorescence
protein (GFP)-labeled strain of Uv was developed by
Agrobacterium-mediated transformation,
electroporation or polyethylene glycol
(PGE)-mediated protoplast transformation,
respectively [18, 40, 41]. By using the GFP-tagged
strain, Ashizawa et al. [18] observed that the infection
of Uv initiates with conidia landing and germinating
on the outer spikelet surface, then hyphae grow on the
outer spikelet surface and extend from spikelet apex
onto the inner spikelet surface, finally, hyphae grow
onto the floral organs and eventually form smut ball
[18]. At 72 hours post inoculation (hpi), many
germinated conidia are observed to present on spikelet
surfaces. By 120 hpi, the hyphae have gradually
grown to form mycelia on the spikelets. At 144 hpi,
hyphae have grown extensively to the apices of
spikelets, and then colonize onto the inner surfaces of
the lemma and palea through the small gap between
the lemma and palea. After heading, the floral organs
are covered with hyphae by 9 dpi, and finally all the
organs are completely covered with hyphae by 11 dpi
[18]. In addition, by examination of serial semi-thin
and ultra-thin sections of infected spikelets, Tang et al.
[17] identified that the primary infection sites for the
pathogen are the upper parts of the three stamen
filaments located between the ovary and the lodicules,
where the pathogen intercellularly grows inside the
filaments and extends along the filament base. After
the fungal infection, the host cells are degraded
gradually. However, the pathogen does not penetrate
host cell walls directly and does not form haustoria.
The stigma and lodicules are also occasionally
infected. In the smut balls, the ovary remains alive and
is never infected [17].
4. Resistance in Rice
Rice resistance to false smut disease is relatively
less reported and the inheritance of resistance is rarely
recorded. A few reports claimed that resistance level
is significantly different among different varieties
[42-44]. To study the inheritance of the resistance to
rice false smut, Li et al. [45] developed a population
of 157 recombinant inbred lines (RILs) derived from
the cross between resistant cultivar IR28 (Oryza sativa
supsp. indica) and susceptible landrace Daguandao (O.
sativa supsp. japonica) [45]. By using the RIL
population, a model of mixed two major genes and
polygenes (model E-1-3) is proposed to explain the
inheritance of the resistance against rice false smut
disease. The two major genes have equivalent additive
effect of 11.41, and their heritability is about 76.67%,
while the heritability of polygenes is about
22.86% [45].
5. Alternative Hosts
In addition to rice, maize and several weeds
common to rice fields are found to be the alternative
hosts of Uv. It was reported that Uv also attacks
Digitaria marginata, a common rice weed, which
occurs in 85% of the rice fields [46]. False smut
disease was also found on Panicum trypheron, a
common grass around paddy fields. Cross inoculation
studies revealed that chlamydospores from P.
Progress in the Study of False Smut Disease in Rice
1215
trypheron infected rice and vice versa. Thus P.
trypheron is an important source of inoculums
between seasons [47]. False smut disease was also
found on the tassels of Corn (Zea mays L.), but was of
little economic importance [13]. In addition, the
fungus was also reported to attack Echinochloa
crusgalli and Imperata cylindrica, two common
weeds on irrigation canals in Egypt [1].
6. Future Prospective and Conclusions
Generally, the study on certain disease includes the
pathogen, the host and the host-pathogen interaction.
Plants respond to pathogen infection with a
two-branched innate immune system [48]. The first
branch recognizes and responds to microbe-associated
molecular patterns (MAMPs), the molecules common
to many classes of microbes including non-pathogens,
resulting in MAMP-triggered immunity (MTI). The
second responds to pathogen virulence factors, either
directly or through their effects on host targets,
resulting in effector-triggered immunity (ETI) [48].
As for rice smut disease, the resistance mechanism is
still unknown. Studies on the pathogen side have
made great progresses in pathogen purification,
culture conditions, and the life cycle, as well as the
morphology of the chlamydospore, sclerotium and
ascospore [6, 20, 49]. Methods for transformation of
Uv for transgenic analysis and artificial inoculation
have been developed for better investigation of the
disease [34, 40, 41]. Comparing with that of the
pathogen, less progress is made on the host side,
although it does exist different sensitivities to Uv
attack among different rice varieties [43-45]. There
still misses a link for the disease cycle with the life
cycle of the pathogen, although it seems that Uv firstly
colonizes on the spikelet surface and extends into the
floret through the small gap between palea and lemma
and then infects filaments of the stamen and
eventually occupies the whole inside space of the
floret to form the smut balls [17, 18]. It is imaginable
that ascospores or chlamydospores enter the booting
sheath along with water flowing on the top leaves.
Though convincing experimental evidence is lack for
this hypothesis, there does exist air-borne spores of
the fungus and exhibits the daily maximum recurring
at 22:00 pm [50]. The hypothesis that water flowing
brings the primary infection source into the sheath is
consistent with the observation that the disease is
much more severe when rice heading stage is located
in rainy and high humidity days. In addition to rice,
maize and at least four gramineae weeds, there quite
possibly exist more weeds common in the rice fields
being the alternative hosts of Uv to produce plenty of
chlamydospores at rainy days as the primary infection
source. Thus, study foci in the future should be on: (1)
the development of a more rapid and effective system
to evaluate rice resistance and susceptibility to the
disease. Current sheath injection method is limited to
booting stage only and is time consuming; (2) the
screening of resistance rice germplasms that can
efficiently control false smut disease and be used for
breeding of resistance varieties; (3) resistant
mechanisms of the resistance germplasms; (4) the host
ranges and possible colonizing organs other than
florets and (5) the mechanisms of pathogenesis by Uv.
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... Ustilaginoidea virens). This fungus transforms individual grains of the panicle into greenish-black smut balls, which are often covered by sclerotinia and may fall to the ground, leaving powdery chlamydospores (Guo et al., 2012). Damage caused by false smut includes yield reductions and contamination of grains and panicles with ustiloxins, which are antimitotic cyclic peptides toxic to humans and animals (Koiso et al., 1994;Tanaka et al., 2008;Guo et al., 2012). ...
... This fungus transforms individual grains of the panicle into greenish-black smut balls, which are often covered by sclerotinia and may fall to the ground, leaving powdery chlamydospores (Guo et al., 2012). Damage caused by false smut includes yield reductions and contamination of grains and panicles with ustiloxins, which are antimitotic cyclic peptides toxic to humans and animals (Koiso et al., 1994;Tanaka et al., 2008;Guo et al., 2012). N fertilization with urea or unspecified N of 99-247 kg N ha À1 showed increased infection by rice false smut (Brooks et al., 2010(Brooks et al., , 2011Rani et al., 2015). ...
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Conventional chemical crop protection with pesticides is increasingly seen as being critical, because of pesticide residues in food and the environment. Integrated alternative management strategies such as crop rotations and soil management might also involve the targeted use of certain mineral fertilizers with benefits for plant health. A key element required for healthy crops is nitrogen, which is applied at differing dosages in various chemical forms, all with distinct effects on crop physiology and plant growth. Here, we review classical and more recent evidence for the crop disease-protective effects of nitrogen and various chemical nitrogen forms. We conclude that simple general statements concerning disease-protective roles in agricultural environments remain elusive, although complex plant-soil microbial interaction networks are becoming increasingly understood. The health of modern varieties might be substantially improved by certain chemical nitrogen fertilizer forms, particularly when the disease-causing fungal species are known.
... Anhui, Hunan, Hubei, Jiangsu, Jiangxi, and Zhejiang provinces in China have the highest prevalence (Lu et al., 2018). Furthermore, RFS has freshly been recognized in rice-growing areas around the world with rising frequency (Guo et al., 2012;Ladhalakshmi et al., 2012;Jecmen and Tebeest, 2015). False smut balls (FSB) infect rice grains with are in yellowish orange to green in color, which are before becoming a greenish-black color (Nessa et al., 2015;Kumagai et al., 2016). ...
... There are very few resistances to rice false smut are reported although substantial efforts on screening of on-field resistance and quantitative trait loci (QTL) analysis are done (Guo et al., 2012;Huang et al., 2015;. Two key genes regulating RFS using polygene were also mapped by mixed model and the heritability of the said gene was also conducted . ...
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Ustilaginoidea virens is a rice fungus that becomes as most destructive in the world. Rice false smut (RFS) pathogen causes substantial yield drop and quality of grain. The disease-causing fungus developed mycotoxins poses a threat to food safety and human as well as animal health. Recent advances in the study of U. virens’ life cycle, their infection process mechanisms, pathogenic gene, genome, and bio-molecules produced were investigated. The present chapter outlined false smut disease resistance in rice along with various potential directions and main queries that require to be answered to provide insights into the mechanism involved at molecular levels. In addition to these various other aspects of rice false smut pathogen and management practices are also discussed.
... . False smut balls contain a large amount of mycotoxins that not only deteriorate grain quality but also threaten the health of both animals and people (Fu et al., 2018;Guo et al., 2012;Zhang et al., 2014). As one of the major types of mycotoxins produced by U. virens, the polyketide ustilaginoidins have at least 27 derivatives, most of which have been structurally identified (Li et al., 2019;Meng et al., 2015;Meng, Zhao, et al., 2021;Sun et al., 2017). ...
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Ustilaginoidea virens is the causal agent of rice false smut, which has recently become one of the most important rice diseases worldwide. Ustilaginoidins, a major type of mycotoxins produced in false smut balls, greatly deteriorates grain quality. Histone acetylation and deacetylation are involved in regulating secondary metabolism in fungi. However, little is yet known on the functions of histone deacetylases (HDACs) in virulence and mycotoxin biosynthesis in U. virens . Here, we characterized the functions of the HDAC UvHOS3 in U. virens . The Δ Uvhos3 deletion mutant exhibited the phenotypes of retarded growth, increased mycelial branches and reduced conidiation and virulence. The Δ Uvhos3 mutants were more sensitive to sorbitol, sodium dodecyl sulphate and oxidative stress/H 2 O 2 . Δ Uvhos3 generated significantly more ustilaginoidins. RNA‐Seq and metabolomics analyses also revealed that UvHOS3 is a key negative player in regulating secondary metabolism, especially mycotoxin biosynthesis. Notably, UvHOS3 mediates deacetylation of H3 and H4 at H3K9, H3K18, H3K27 and H4K8 residues. Chromatin immunoprecipitation assays indicated that UvHOS3 regulates mycotoxin biosynthesis, particularly for ustilaginoidin and sorbicillinoid production, by modulating the acetylation level of H3K18. Collectively, this study deepens the understanding of molecular mechanisms of the HDAC UvHOS3 in regulating virulence and mycotoxin biosynthesis in phytopathogenic fungi.
... Although rice false smut is an ancient disease, its epidemiology is not well understood especially under the changing environments, and particularly under Bangladesh condition (Nessa, 2017). The typical symptom of the disease appears on grains ball like colonies (composed of chlamydospores) called 'smut balls' (Guo et al., 2012). Three types of smut balls -orange, olivaceous greenish-black and white -has been clearly described by Nessa et al. (2021). ...
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It is perceived that sclerotia of the pathogen, in addition to chlamydospores, play an important role in the epidemiology of rice false smut disease. The propagule has been identified only in five rice growing countries of the world, and never recorded in Bangladesh. This study was undertaken to identify the sclerotia, quantify their concentration on smut balls and estimate the time of its formation. Intensive field-by-field monitoring was conducted during 2014, 2015 and 2016 at experimental farm of the Bangladesh Rice Research Institute, Gazipur. Sclerotia of rice false smut pathogen was first recorded on the 14th December 2014. Sclerotia were observed only on olivaceous greenish-black smut balls, but not on orange smut ball. During the three years study, on average, 30.61 ± 9.79% (± is 95%confidence interval) olivaceous greenish-black smut balls borne sclerotia, the average number being 1.63 ± 0.09 per sclerotia-bearing ball. The 'threshold temperature' for sclerotia formation was estimated as above 11°C difference in day-night temperature. Consistence presence and high concentration of sclerotia in smut balls signify its role in the epidemiology of the disease in the agroecology of Bangladesh.
... This fungus also produces ustilaginoidins, a class of bis-naphthol-γ-pyrrolone compounds with inhibitory effects on radicle elongation cells of rice seeds . Since the mycelial growth of U. virens is slow under artificial culture conditions and the occurrence of rice false smut is greatly affected by the environmental conditions, artificial inoculation of U. virens is not satisfactory (Guo et al., 2012;He et al., 2015). At present, injection inoculation is the widely used to determine the pathogenicity of U. virens and evaluate the resistance level of rice to rice false smut (Zhou et al., 2014;Han et al., 2015). ...
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Introduction Rice false smut caused by Ustilaginoidea virens , is a destructive fungal disease encountered in many rice-producing areas worldwide. To determine the process by which U. virens infects rice spikelets in the field. Methods The green fluorescent protein-labeled U. virens was used as an inoculum to conduct artificial inoculation on rice at the booting stage via non-destructive panicle sheath instillation inoculation. Results The results showed that the conidia of U. virens germinated on the surface of rice glumes and produced hyphae, which clustered at the mouth of rice glumes and entered the glumes through the gap between the palea and lemma. The conidia of U. virens colonized in rice floral organs, which led to pollen abortion of rice. U. virens wrapped the whole rice floral organ, and the floral organ-hyphae complex gradually expanded to open the glumes to form a rice false smut ball, which was two to three times larger than that observed in normal rice. Discussion Panicle sheath instillation inoculation was shown to be a non-destructive inoculation method that could simulate the natural infection of U. virens in the field. The entire infection process of U. virens was visualized, providing a theoretical reference for formulating strategies to control rice false smut in the field.
... The formation of false smut balls covered by powdery chlamydospores is the representative phenotype of false smut disease [1]. The invasion of U. virens not only interrupts rice grain filling, causes production decrease, but also endangers food safety on account of the production of mycotoxins, including ustilaginoidins and ustiloxins [3,4]. Recently, the functions of various U. virens genes, including UvHog1, UvPro1, SCRE6, UvCBP1, UvATF21, UvSMEK1 and so on, which participate in the tolerance to various stresses and virulence, have been analyzed [5][6][7][8][9][10]. ...
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Rice false smut caused by Ustilaginoidea virens is becoming one of the most devastating diseases in rice production areas in the world. Revealing U. virens potential pathogenic mechanisms provides ideas for formulating more effective prevention and control strategies. Sucrose non-fermenting 1 (Snf1) protein kinase plays a critical role in activating transcription and suppressing gene expression, as well as in cellular response to various stresses, such as nutrient limitation. In our study, we identified the Snf1 homolog UvSnf1 and analyzed its biological functions in U. virens. The expression level of UvSnf1 was dramatically up-regulated during invasion, indicating that UvSnf1 may participate in infection. Phenotypic analyses of UvSnf1 deletion mutants revealed that UvSnf1 is necessary for hyphae growth, spore production, and virulence in U. virens. Moreover, UvSnf1 promotes U. virens to use unfavorable carbon sources when the sucrose is insufficient. In addition, deletion of UvSnf1 down-regulates the expression of the cell wall-degrading enzymes (CWDEs) genes under sucrose limitation conditions in U. virens. Further analyses showed that CWDEs (UvCut1 and UvXyp1) are not only involved in growth, spore production, and virulence but are also required for the utilization of carbon sources. In conclusion, this study demonstrates that UvSnf1 plays vital roles in virulence and carbon source utilization in U. virens, and one of the possible mechanisms is playing a role in regulating the expression of CWDE genes.
... Later, the membrane bursts and the colour changes to yellowish orange, olive green and finally greenish black. In India, the disease has been reported to occur in moderate to severe intensity from 2000 onwards (Guo et al., 2012;Singh and Pophaly, 2010;Ladhalakshmi et al., 2012;Laha et al., 2016). The yield losses in different states of the country have been estimated to vary between 0.2% to 49% depending on the disease intensity and rice varieties grown in those areas (Dodan and Singh, 1996). ...
... The initial color is yellow and eventually turns greenish black (4). RFS not only reduces the rice yield but also produces toxins, which are harmful to humans and animals (9). RFS produces ustiloxins, a phytotoxin and mycotoxin that UA contamination was con rmed in rice samples collected from the China market at concentrations up to 56μg/kg (11). ...
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Background: Ustiloxins is a mycotoxin produced by the metabolism of Rice false smut. Studies have shown that Ustiloxins may be toxic to animals, but there is still a lack of toxicological evidence. The liver, as the main organ for the biotransformation of foreign chemicals, may be the direct target organ of Ustiloxins toxicity. Results: In this study, we found that Ustiloxins inhibited BNL CL.2 cells in a dose-and time-dependent manner. In addition, scanning electron microscope observation showed that the cell membrane of the experimental group was damaged, with the appearance of apoptotic bodies. We analyzed the key action targets of Ustiloxins on hepatocyte injury using full-length transcriptomics. A total of 1099 differentially expressed genes were screened, of which 473 genes were up-regulated, and 626 genes were down-regulated. The selected genes were verified using qRT-PCR, and the results were consistent with those of full-length transcriptomics, proving the reliability of full-length transcriptomics. Besides, we also found that the expression of MCM7 and CDC45 in BNL CL.2 cells treated with Ustiloxins decreased, and the expression of CCl-2, CYP1b1, CYP4f13, and GSTM1 increased according to qRT-PCR. Moreover, the ROS and GSH levels were significantly increased in cells exposed to 5, 10, and 20 μg/mL of Ustiloxins. Conclusions: Ustiloxins could change CYP450 and GST-related genes, affect DNA replication and cell cycle, and lead to obvious oxidative stress and liver cell injury.
Chapter
Rice is a staple food crop consumed by almost half of the world’s population. Bakanae or foot rot disease, caused by the fungal pathogen Fusairum fujikuroi [telomorph: Gibberella fujikuroi (Sawada) Wollenw], has become a serious worldwide threat, leading to high losses in yield. Understanding of the interaction between rice and F. fujikuroi may be helpful to find out new resistant or tolerant cultivars and to devise the alternative disease control strategies. In this chapter, we have discussed the different molecular and chemical patterns involved in this host–pathogen interaction. Host plant resistance is considered the most effective, sustainable, and practically feasible approach for disease management. In recent decades, using conventional breeding approaches, resistance genes have been incorporated from resistant lines to rice cultivars. The efficiency of these breeding approaches has further improved with the development of molecular markers. Identification of genes/QTLs and/or marker-trait associations is necessary for the successful application of these marker-based approaches. Various QTL mapping and genome-wide association studies have been conducted in rice to identify markers associated with foot rot resistance loci. One of the main aims of this chapter is to update and summarize findings on foot rot disease resistance breeding of rice published so far. Furthermore, we have compiled a user‐friendly table listing disease resistance QTL data and marker-trait associations providing a valuable resource for further foot rot disease resistance research. This chapter also provides a panorama of the application of OMICS approaches including both genomics and postgenomic technologies such as transcriptomics and proteomics to the improvement of foot rot disease resistance in rice crop.
Article
Fifty nine isolates of Ustilaginoidea virens, the cause of false smut of rice (Oryza sativa L.), were obtained from 46 rice hybrids in 14 counties in Sichuan, China during a survey conducted in 2006. Their pathogenicity was tested by inoculation on 3 rice hybrids, Gangyou182, Gangyou94-11 and Yixiangyou2292, 6-9 days before heading in 2007. False smut was assessed 3 weeks after inoculation using a disease index (DI) based on symptom frequency on the panicles. The sporulation capacity of these isolates was also measured. The results showed that: (i) DIs were significantly different (P<0.01) both among pathogen isolates and rice hybrids, ranging from 0 to 98.52; (ii) there was a significant interaction between isolates and hybrids (P<0.01); (iii) significant differences in sporulation among the 59 isolates were found (P<0.01), but no relationship between sporulation and virulence on the 3 hybrids; (iv) variation in sporulation was observed among isolates originating from different counties and from the same county (P<0.05); (v) there were significant differences (P<0.01) between isolate groups from different host origin, female parents and male parents. Our results indicated a linkage between the pathogenicity of U. virens isolates and the resistance of rice hybrids. The 59 isolates could be classified into 6 groups based on their virulence to the tested rice hybrids. While variation in sporulation did not indicate host genotype-pathogen isolate interaction, pathogenicity data suggest specialisation, which is dependent on the site of origin of the isolates, the original host (rice hybrids) and the parentage of the original host.