Thomas L Stubbs

The Open University (UK) · Department of Life, Health and Chemical Sciences

Various Mesozoic marine reptile lineages evolved streamlined bodies and efficient lift-based swimming, as seen in modern aquatic mammals. Ichthyosaurs had low-drag bodies, akin to modern dolphins, but plesiosaurs were strikingly different, with long hydrofoil-like limbs and greatly variable neck and trunk proportions. Using computational fluid dyna...

Understanding the origin, expansion and loss of biodiversity is fundamental to evolutionary biology. The approximately 26 living species of crocodylomorphs (crocodiles, caimans, alligators and gharials) represent just a snapshot of the group's rich 230-million-year history, whereas the fossil record reveals a hidden past of great diversity and inno...

How clades diversify early in their history is integral to understanding the origins of biodiversity and ecosystem recovery following mass extinctions. Moreover, diversification can represent evolutionary opportunities and pressures following ecosystem changes. Ichthyosaurs, Mesozoic marine reptiles, appeared after the end-Permian mass extinction a...

Mesozoic marine ecosystems were dominated by several clades of reptiles, including sauropterygians, ichthyosaurs, crocodylomorphs, turtles, and mosasaurs, that repeatedly invaded ocean ecosystems. Previous research has shown that marine reptiles achieved great taxonomic diversity in the Middle Triassic, as they broadly diversified into many feeding...

Mesozoic crurotarsans exhibited diverse morphologies and feeding modes, representing considerable ecological diversity, yet macroevolutionary patterns remain unexplored. Here, we use a unique combination of morphological and biomechanical disparity metrics to quantify the ecological diversity and trophic radiations of Mesozoic crurotarsans, using t...

Terrestrial ecosystems evolved substantially through the Palaeozoic, especially the Permian, gaining much new complexity, especially among predators. Key among these predators were non-mammalian synapsids. Predator ecomorphology reflect interactions with prey and competitors, which are key controls on carnivore diversity and ecology. Therefore, car...

The Triassic was a time of ecological upheaval as life recovered from the Permian-Triassic mass extinction. Archosauromorphs were a key component of the recovery, diversifying substantially during the Triassic and encompassing the origins of dinosaurs, pterosaurs and crocodylomorphs. Here, we explore the evolution of locomotion in Archosauromorpha...

The initial radiation of Eosauropterygia during the Triassic biotic recovery represents a key event in the dominance of reptiles secondarily adapted to marine environments. Recent studies on Mesozoic marine reptile disparity highlighted that eosauropterygians had their greatest morphological diversity during the Middle Triassic, with the co-occurre...

Neck elongation has appeared independently in several tetrapod groups, including giraffes and sauropod dinosaurs on land, birds and pterosaurs in the air, and sauropterygians (plesiosaurs and relatives) in the oceans. Long necks arose in Early Triassic sauropterygians, but the nature and rate of that elongation has not been documented. Here, we rep...

As one of the predominant benthic organisms in the Palaeozoic, brachiopod was largely eliminated in the Permian–Triassic boundary mass extinction, and then highly diversified in the Middle Triassic. Since fossil data from the Early Triassic are rarely reported, the recovery patterns of Early Triassic brachiopods remain unclear. This study documents...

The aftermath of the end‐Permian mass extinction provided ecological opportunities for many groups of reptiles, marking the beginning of reptile dominance of the Mesozoic oceans. Clades such as ichthyosaurs, thalattosuchians, sauropterygians, mosasaurs and turtles evolved a remarkable diversity of ecological niches and became important components o...

A diverse Wuchiapingian brachiopod fauna, which contains 57 species in 28 genera, is described from the Shuizhutang Formation at the Liannan section, Guangdong province, southeastern China. Four new species Tyloplecta liannanensis n. sp., Linoproductus huananensis n. sp., Araxathyris minor n. sp., and Permophricodothyris flata n. sp. are proposed....

We reexamine and redescribe the type specimens and other associated material of the Late Jurassic rhynchocephalian Opisthias rarus, from Quarry 9 of the Morrison Formation. We rediscover and describe a fragment of rock matrix belonging to the holotype that is presented for the first time, and we also comment on undescribed material from Quarry 9 th...

The squamates (lizards, snakes, and relatives) today comprise more than 10,000 species, and yet their sister group, the Rhynchocephalia, is represented by a single species today, the tuatara. The explosion in squamate diversity has been tracked back to the Cretaceous Terrestrial Revolution, 100 million years ago (Ma), the time when flowering plants...

Mosasauroidea, prominent marine lizards (Squamata, Toxicofera) of the final 30 million years of the Cretaceous, have been extensively studied for their morphology, ecology and systematics in the past two centuries. However, the relative roles of biological and physical processes as drivers of their morphological diversification remain uncertain. He...

Biodiversity today is uneven, with equally ancient sister groups containing few or many species. It has often been assumed that high biodiversity indicates fast evolution, and yet in a classic work in 1944 George Simpson suggested that fast evolution might generate instability and extinction, and that slow evolution led to high biodiversity. Here w...

The Triassic (252–201 Ma) marks a major punctuation in Earth history, when ecosystems rebuilt themselves following the devastating Permian-Triassic mass extinction. Herbivory evolved independently several times as ecosystems comprising diverse assemblages of therapsids, parareptiles and archosauromorphs rose and fell, leading to a world dominated b...

Squamates (lizards and snakes) are highly successful modern vertebrates, with over 10 000 species. Squamates have a long history, dating back to at least 240 million years ago (Ma), and showing increasing species richness in the Late Cretaceous (84 Ma) and Early Palaeogene (66–55 Ma). We confirm that the major expansion of dietary functional morpho...

An increasing number of unexpectedly diverse benthic communities are being reported from microbially precipitated carbonate facies in shallow-marine platform settings after the end-Permian mass extinction. Ostracoda, which was one of the most diverse and abundant metazoan groups during this interval, recorded its greatest diversity and abundance as...

Birds and crocodiles show radically different patterns of brain development, and it is of interest to compare these to determine the pattern of brain growth expected in dinosaurs. Here we provide atlases of 3D brain (endocast) reconstructions for Alligator mississippiensis (alligator) and Struthio camelus (ostrich) through ontogeny, prepared as dig...

Ecology and morphology are different, and yet in comparative studies of fossil vertebrates the two are often conflated. The macroevolution of Mesozoic marine tetrapods has been explored in terms of morphological disparity, but less commonly using ecological‐functional categories. Here we use ecospace modelling to quantify ecological disparity acros...

The acquisition of elongated, sabre-like canines in multiple vertebrate clades during the last 265 Myr represents a remarkable example for convergent evolution. Due to striking superficial similarities in the cranial skeleton, the same or similar skull and jaw functions have been inferred for sabre-toothed species and interpreted as an adaptation t...

Although much attention has been paid to Changhsingian brachiopods in South China, there are only two Chinese studies, published in 1979 and 1990, on Changhsingian brachiopods from the south‐eastern part of South China. Based on systematically collected fossil material, this paper describes and quantitatively analyses a Changhsingian brachiopod fau...

Diversity indices (dominance and evenness) and ecological spatial structure (lifestyles and relative abundances) are important features of Changhsingian brachiopod communities prior to the end‐Permian mass extinction (EPME) and could predict temporal and spatial extinction patterns during the EPME. In South China, Changhsingian brachiopod communiti...

Disparity, the diversity of form and function of organisms, can be assessed from cladistic or phenetic characters , and from discrete characters or continuous characters such as landmarks, outlines, or ratios. But do these different methods of assessing disparity provide comparable results? Here we provide evidence that all metrics correlate signif...

The hadrosaurids were a successful group of herbivorous dinosaurs. During the Late Cret-aceous, 100 to 66 million years ago, hadrosaurids had high diversity, rapid speciation rates, and wide geographic distribution. Most hadrosaurids were large bodied and had similar postcranial skeletons. However, they show important innovations in the skull, incl...

How much of evolutionary history is lost because of the unevenness of the fossil record? Lagerstätten, sites which have historically yielded exceptionally preserved fossils, provide remarkable, yet distorting insights into past life. When examining macroevolutionary trends in the fossil record, they can generate an uneven sampling signal for taxono...

Understanding temporal patterns in biodiversity is an enduring question in paleontology. Compared with studies of taxonomic diversity, long-term perspectives on ecological diversity are rare, particularly in terrestrial systems. Yet ecological diversity is critical for the maintenance of biodiversity, especially during times of major perturbations....

Some of the most varied colors in the natural world are created by iridescent nanostructures in bird feathers, formed by layers of melanin‐containing melanosomes. The morphology of melanosomes in iridescent feathers is known to vary, but the extent of this diversity, and when it evolved, is unknown. We use scanning electron microscopy to quantify t...

Marine reptiles flourished in the Mesozoic oceans, filling ecological roles today dominated by crocodylians, large fish, sharks and cetaceans. Many groups of these reptiles coexisted for over 50 million years (Myr), through major environmental changes. However, little is known about how the structure of their ecosystems or their ecologies changed o...

Many traits have been linked to extinction risk among modern vertebrates, including mode of life and body size. However, previous work has indicated there is little evidence that body size, or any other trait, was selective during past mass extinctions. Here, we investigate the impact of the Triassic–Jurassic mass extinction on early Archosauromorp...

Morphological disparity can be measured using several different methods, all of which aim to quantify variation in form. The most used methods are discrete characters and morphometric methods: geometric landmarks and outlines. Discrete characters measure presences and absences and quantifiable features. The morphometric methods, outlines and landma...

Pterosaurs were a successful group of Mesozoic flying reptiles. They were the first vertebrate group to achieve powered flight and varied enormously in morphology and ecology, occupying a variety of niches and developing specialized feeding strategies. Ecomorphological principles suggest this variation should be reflected by great morphological div...

The quality of the fossil record is essential for interpreting the significance of macroevolutionary patterns. Palaeodiversity is filtered through geological and human processes, and efforts to correct for these biases are part of a debate concerning the role of sampling proxies and standardisation in models of biodiversity. Here, we analyse the fo...

The Late Triassic rhynchocephalian Clevosaurus latidens Fraser, 1993 is known from the fissure deposits of Cromhall Quarry, England. Many studies have questioned its referral to the genus Clevosaurus Swinton, 1939 and some phylogenetic analyses suggest a close relationship with herbivorous rhynchocephalians. We re-examine the type specimens and ref...

Figure S1. Impact of missing data on the functional morphospace. Figure S2. Mean within‐time bin variance calculated from variable numbers of PC axes. Figure S3. Principal component loadings for the functional PCA analysis. PC1 (68%) accounts for variation in the anterior mechanical advantage (MA), maximum jaw depth and average jaw depth. PC2 (24...

Actinopterygians (ray-finned fishes) successfully passed through four of the big five mass extinction events of the Phanerozoic, but the effects of these crises on the group are poorly understood. Many researchers have assumed that the Permo-Triassic mass extinction (PTME) and end-Triassic extinction (ETE) had little impact on actinopterygians, des...

The morphology of the vertebrate lower jaw has been used to infer feeding ecology, with transformations in mandibular shape and structure likely to have facilitated the emergence of different feeding behaviours in vertebrate evolution. Here we present elliptical Fourier shape and principal component analyses, characterizing and comparing the dispar...

The tuatara, Sphenodon punctatus, known from 32 small islands around New Zealand, has often been noted as a classic ‘living fossil’ because of its apparently close resemblance to its Mesozoic forebears and because of a long, low-diversity history. This designation has been disputed because of the wide diversity of Mesozoic forms and because of deri...

Ornithopods were key herbivorous dinosaurs in Mesozoic terrestrial ecosystems, with a variety of tooth morphologies. Several clades, especially the ‘duck-billed’ hadrosaurids, became hugely diverse and abundant almost worldwide. Yet their evolutionary dynamics have been disputed, particularly whether they diversified in response to events in plant...